BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12660
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CFQ3|AQR_MOUSE Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2
Length = 1481
Score = 342 bits (878), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 161/214 (75%), Positives = 181/214 (84%), Gaps = 1/214 (0%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E+ ANAGL+YDFQLINVEDF GVGESEPNPYFYQNL EAEY VALFMYM L
Sbjct: 1161 LPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL 1220
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQKHLIRD+IN RC +NPLIGRP+KVTTVD++QGQQNDYILLSLV
Sbjct: 1221 LGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1280
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
RT +VGHLRDVRRL+VAMSRARLGLY+FARVSLF+NCFELTPAF+QL RP LHI+P E
Sbjct: 1281 RTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTE 1340
Query: 181 TFPTSRLNTSRVPNSV-AIQDMVHMTTLVYNFYM 213
FPTSR N R P+ V I++M M VYN YM
Sbjct: 1341 PFPTSRKNGERPPHEVQVIKNMPQMANFVYNMYM 1374
>sp|O60306|AQR_HUMAN Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4
Length = 1485
Score = 338 bits (867), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 159/214 (74%), Positives = 180/214 (84%), Gaps = 1/214 (0%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E+ ANAGL+YDFQLINVEDF GVGESEPNPYFYQNL EAEY VALFMYM L
Sbjct: 1157 LPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL 1216
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQKHLIRD+IN RC +NPLIGRP+KVTTVD++QGQQNDYILLSLV
Sbjct: 1217 LGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1276
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
RT +VGHLRDVRRL+VAMSRARLGLY+FARVSLF+NCFELTPAF+QL RP LHI+P E
Sbjct: 1277 RTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTE 1336
Query: 181 TFPTSRLNTSRVPNSVA-IQDMVHMTTLVYNFYM 213
FPT+R N R + V I++M M VYN YM
Sbjct: 1337 PFPTTRKNGERPSHEVQIIKNMPQMANFVYNMYM 1370
>sp|O94508|CWF11_SCHPO Pre-mRNA-splicing factor cwf11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf11 PE=1 SV=1
Length = 1284
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 2/206 (0%)
Query: 13 ANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILS 72
N+G ++ Q INV F G E+EP + QNL EAEY VALF YMR+LGYP ++I I +
Sbjct: 1078 GNSGFAHEVQFINVGAFKGSQETEPVSGYKQNLGEAEYAVALFQYMRMLGYPTNEIVICT 1137
Query: 73 TYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQN-DYILLSLVRTASVGHLRDV 131
Y Q L+ ++I+ RC+ N G+P V TV+K + ++++ + V + +
Sbjct: 1138 LYESQVSLLNEIISVRCSHNSFFGQPAFVGTVEKLPSDKRVNFVIFTTVESKEASDHWNP 1197
Query: 132 RRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHETFPTSRLNTSR 191
+ A S GLYV LFR+ L +N++ P +L + E +P+S S
Sbjct: 1198 KTFYKAFSACSYGLYVLCNRDLFRSTRGLEKLWNEIEKTPDKLLLTTGEIYPSSHKIGSS 1257
Query: 192 VPNSVAIQDMVHMTTLVYNFYMDKVN 217
V + I++++H++ V ++N
Sbjct: 1258 V-ETFEIENLLHLSNYVVEMTKKRLN 1282
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+QN EA + V L Y+ Y +ITIL+TY GQ +R ++ + KV
Sbjct: 1121 HQNQHEAHFVVELCQYLLCQEYLPSQITILTTYTGQLFCLRKLMPVKTFAGI------KV 1174
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSLF 154
VDKYQG++ND ILLSLVR+ VG L+ R+ VA+SRA+ G+Y + +
Sbjct: 1175 HVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQML 1230
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 9/116 (7%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+QN EA + V L Y Y +ITIL+TY GQ +R ++ + +V
Sbjct: 1128 HQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGV------RV 1181
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSLF 154
VDKYQG++ND ILLSLVR+ VG L+ R+ VA+SRA+ G+Y + +
Sbjct: 1182 HVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQML 1237
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPH--KV 101
NL EA+ V +Y+ G KIT L+ Y QK LI R L H KV
Sbjct: 835 NLFEAQMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIE-----RLLSESLNREKHFIKV 889
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCF 158
TVD YQG++ND +LLSLVR VG L R+ V++SRAR GL++F L
Sbjct: 890 ATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESN 949
Query: 159 EL-TPAFNQLM 168
L A N LM
Sbjct: 950 PLWWDAINTLM 960
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 18 VYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQ 77
++ F E+ + G S + N EA C + LG +I I++ Y GQ
Sbjct: 815 MFFFNCTGSEEISSSGTS------FINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQ 868
Query: 78 KHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRL 134
+ I + N + + +V +VD +QG++ DYI+LS VR+ +G L+D RRL
Sbjct: 869 RAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRL 928
Query: 135 IVAMSRARLGLYVFARVSLFRNCFELTPAFNQLM 168
VA++RAR GL + + P +N L+
Sbjct: 929 NVALTRARFGLIILGNAKVLSK----DPLWNSLI 958
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 22 QLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLI 81
Q INVE + P+ Y N+ EAE + + + P + IT Y+ Q +
Sbjct: 517 QFINVEGIERKDKESPS---YYNIEEAEKVLEIVKKLVKYKIPTNVIT---PYDAQVRYL 570
Query: 82 RDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRA 141
R + D +V TVD +QG++N+ I++S VRT + G L+D+RRL VA++RA
Sbjct: 571 RRLFEEHNID-------IEVNTVDGFQGRENEAIVISFVRTKNFGFLKDLRRLNVAITRA 623
Query: 142 RLGLYVFARVSLFR 155
+ L + +L +
Sbjct: 624 KRKLILIGNENLLK 637
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+ N EA L + G H+I ++++Y GQ+ I + ++T+ N + ++
Sbjct: 738 FLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEI 797
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSLF 154
+VD +QG++ DYI+++ VR+ +G L D RRL VA++RA+ GL + +
Sbjct: 798 ASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVL 853
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 31 GVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCA 90
G E N + N EA C + + G +I +++ Y GQ+ I + +
Sbjct: 689 GREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGS 748
Query: 91 DNPLIGRPHKVTTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
+ + +V +VD +QG++ DYI+LS VR ++G LRD RRL V ++RA+ GL +
Sbjct: 749 LDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVI 808
Query: 148 FARV-SLFRNCFELTPAFNQLMI 169
SL RN +N L+I
Sbjct: 809 LGNPRSLARNTL-----WNHLLI 826
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 25/200 (12%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA L G +I +++ Y GQ+ I + + + + + +V
Sbjct: 784 YLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEV 843
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCF 158
+VD +QG++ DYI+LS VR+ +G L D RRL VA++RAR G+ + +
Sbjct: 844 ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK-- 901
Query: 159 ELTPAFNQLMIRPQQLHIVPHETFPTSRLNTSRVPNSVAIQDMVHMTTL--VYN----FY 212
P +N L+ H HE LN + Q MV +YN FY
Sbjct: 902 --QPLWNGLLT-----HYKEHECLVEGPLNNLK-------QSMVQFQKPRKIYNDRRLFY 947
Query: 213 MDKVNGMKKEFYSKAKLNAD 232
+ + + NAD
Sbjct: 948 GGGAGMIGNDNFGSGNPNAD 967
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 58 MRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILL 117
+R P + I ++S YN Q ++ +I+ + +++TVD +QG++ D I+L
Sbjct: 559 LRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDI-----EISTVDGFQGREKDVIIL 613
Query: 118 SLVRTA---SVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNC 157
SLVR+ VG L++ RRL VAM+R R L V + + + C
Sbjct: 614 SLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRC 656
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 27 EDFNGVGESEPNPYFYQNLAEAEYC---VALFMYMRLLGYPAHKITILSTYNGQKHLIRD 83
E+ + G S + N EA C V F+ +L +I I++ Y+GQ+ I
Sbjct: 683 EELSASGTS------FLNRTEASTCEKIVTTFLRSNVL---PEQIGIVTPYDGQRSYIVQ 733
Query: 84 VINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTA---SVGHLRDVRRLIVAMSR 140
+ + + + +V +VD +QG++ D+I+LS VR++ +G + D RRL VA++R
Sbjct: 734 YMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTR 793
Query: 141 ARLGLYVFA 149
A+ G+ V
Sbjct: 794 AKYGVIVLG 802
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+ N+AEA + + L + G I +++ Y Q + + +++ +P I + +V
Sbjct: 754 FHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDI-KTVQV 812
Query: 102 TTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
+TVD +QG + + I+LS VRT VG + +R+ VA++R + L + ++ R
Sbjct: 813 STVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGKRHLLIVGNLACLR 866
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 12/112 (10%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAH-----KITILSTYNGQKHLIRDVINTRCADNPLIGRP 98
N+ EA + L +Y RL+ + KI +++ Y Q +R + +I +
Sbjct: 1644 NVEEASF--ILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGS--IIFKH 1699
Query: 99 HKVTTVDKYQGQQNDYILLSLVRTA---SVGHLRDVRRLIVAMSRARLGLYV 147
+ TVD +QGQ+ D I+ S VR++ +G L+D+RRL VA++RA+ LY+
Sbjct: 1700 LDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYI 1751
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 44/156 (28%)
Query: 40 YFYQNLAEAEYCVALFMYMRLL----GYPAHKITILSTYNGQKHLIRDVINTRCADNP-- 93
+ Y+N E CV + +++L P +I +++ Y+ Q+ L+ D++ NP
Sbjct: 944 FTYENKHE---CVEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPKQ 1000
Query: 94 -------------------------------LIGRPHKVTTVDKYQGQQNDYILLSLVRT 122
+I H V TVD +QG + +I+ S VR
Sbjct: 1001 ISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLH-VATVDSFQGHEKSFIIFSCVRN 1059
Query: 123 AS---VGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
+ +G LRD RRL VA++RA+ GL V ++ R
Sbjct: 1060 NTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLR 1095
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + G I +++ Y GQ+ I + + R +V
Sbjct: 749 YLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEV 808
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFA 149
+VD +QG++ D+I+LS VR+ +G L D RRL VA++RA+ GL +
Sbjct: 809 ASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIG 859
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 44 NLAEAEYCVALFMYMRLLG-YP----AHKITILSTYNGQKHLIRDVINTRCADNPLIGRP 98
NL E EY V M LL +P +I +++ Y Q H +R + + +
Sbjct: 1506 NLEEVEYLVN--MVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFM--ST 1561
Query: 99 HKVTTVDKYQGQQNDYILLSLVRTAS---VGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
+ TVD +QGQ+ D I S V++ S +G LRD RRL VA++RAR L + + +
Sbjct: 1562 IDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLK 1621
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N EAE + M L G P I +++ Y Q L++ + N D ++ T
Sbjct: 1337 NHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIFNKNVYDG------LEILT 1390
Query: 104 VDKYQGQQNDYILLSLVRTASV----GHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
D++QG+ I++S+VR S L+++RR+ VAM+RA+ L + S + E
Sbjct: 1391 ADQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVAMTRAKSKLIIIGSKSTIGSVPE 1450
Query: 160 LTPAFNQL 167
+ N L
Sbjct: 1451 IKSFVNLL 1458
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 770 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 829
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFA 149
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 830 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVG 880
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 775 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 834
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFA 149
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 835 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVG 885
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 67 KITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRT---- 122
KI I+S Y Q +R +I + T+D +QGQ+ + IL+S VR
Sbjct: 1745 KIGIISPYREQMQKMRKEFARYFGG--MINKSIDFNTIDGFQGQEKEIILISCVRADDTK 1802
Query: 123 ASVGHLRDVRRLIVAMSRARLGLYV------FARVSLFRNCFE 159
+SVG L+D RR+ VA++RA+ ++V A+ L+R+ E
Sbjct: 1803 SSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIE 1845
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 20/137 (14%)
Query: 23 LINVEDFNGVGESEPNPYFYQNLAEA---EYCVALFMYMRLLGYPAHKITILSTYNGQKH 79
N +D GV ES+ N +N EA E V+ F+ G I I+S Y Q
Sbjct: 1195 FFNTDDILGV-ESKTNNIL-ENHTEAFLIEQAVSSFLER---GVKQSSIGIISIYKSQVE 1249
Query: 80 LIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTAS---VGH-LRDVRRLI 135
L+ + N ++ TVD+YQG+ D IL+S VR+ S VG LRD RL
Sbjct: 1250 LL--------SKNLKSFTEIEINTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLN 1301
Query: 136 VAMSRARLGLYVFARVS 152
VA+SRA++ +F +S
Sbjct: 1302 VALSRAKVKCIMFGSLS 1318
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 62 GYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVR 121
G +I I++ Y GQ+ + + + + + + + ++ +VD +QG++ D I++S VR
Sbjct: 764 GIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVR 823
Query: 122 T---ASVGHLRDVRRLIVAMSRARLGLYVFA 149
+ +G L D RRL VA++RA+ G+ +
Sbjct: 824 SNERQGIGFLNDPRRLNVALTRAKFGIIIVG 854
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA V L G I +++ Y Q +I D++ R + + +V T
Sbjct: 914 NVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLL-ARSSVGMV-----EVNT 967
Query: 104 VDKYQGQQNDYILLSLVRTASVGH----LRDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
VDKYQG+ IL+S VR+ G L+D RRL VA++RA+ L + VS +
Sbjct: 968 VDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVALTRAKHKLILLGSVSSLKRFPP 1027
Query: 160 LTPAFNQL 167
L F+ L
Sbjct: 1028 LGTLFDHL 1035
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA+ V L G I I++ Y Q +I D++ IG +V T
Sbjct: 913 NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLARS------IGMV-EVNT 965
Query: 104 VDKYQGQQNDYILLSLVRT---ASVGH-LRDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
VDKYQG+ +L+S VR+ +VG L+D RRL VA++RA+ L + V NC+
Sbjct: 966 VDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSL-NCY- 1023
Query: 160 LTPAFNQLM 168
P +L+
Sbjct: 1024 --PPLEKLL 1030
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA V L G I I++ Y Q I D++ R + + +V T
Sbjct: 911 NVTEARLIVFLTSTFIKAGCSPSDIGIIAPYRQQLRTITDLL-ARSSVGMV-----EVNT 964
Query: 104 VDKYQGQQNDYILLSLVRTASVGH----LRDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
VDKYQG+ IL+S VR+ G L+D RRL VA++RA+ L + VS +
Sbjct: 965 VDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPP 1024
Query: 160 LTPAFNQL 167
L F+ L
Sbjct: 1025 LEKLFDHL 1032
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPH-- 99
Y N EA + + G +I I++ Y GQ+ + + G H
Sbjct: 745 YLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQ-------FSGSLHTK 797
Query: 100 ----KVTTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFA 149
++ +VD +QG++ D+I+LS VR +G L D RRL VA++RA+ G+ +
Sbjct: 798 LYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVG 854
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 62 GYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVR 121
G PA I ++S YN Q L+R + R +P + ++ +VD +QG++ + ++LS VR
Sbjct: 529 GVPARDIAVVSPYNLQVDLLRQSLVHR---HPEL----EIKSVDGFQGREKEAVILSFVR 581
Query: 122 T---ASVGHLRDVRRLIVAMSRARLGLYVFA 149
+ VG L + RR+ VA++RAR + V
Sbjct: 582 SNRKGEVGFLAEDRRINVAVTRARRHVAVIC 612
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 35 SEPNPYFYQNLAEAEYCVALFMY----MRLLGYPAHKITILSTYNGQKHLIRDVINTRCA 90
SE FYQ+ + + Y + G A I +++ YN Q LIR ++ +
Sbjct: 512 SEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKEK-- 569
Query: 91 DNPLIGRPHKVTTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
G ++ +VDK QG++ + I+ SLVR+ VG L + RRL VA++R + L V
Sbjct: 570 -----GIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCV 624
Query: 148 FA 149
Sbjct: 625 IG 626
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 28 DFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYP----AHKITILSTYNGQKHLIRD 83
D + E++P N E + + LF + YP A +I I+S Y Q +R+
Sbjct: 701 DLSWSTETKPGGGSVFNEHECKMAMYLFQLFTKV-YPDEDFASRIGIISPYRQQVLALRE 759
Query: 84 VINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRT-----ASVGHLRDVRRLIVAM 138
+ + P I + TVD +QG++ + I+ S VR A +G L DVRR+ VA+
Sbjct: 760 IFK----NYPGIS----IDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVAL 811
Query: 139 SRARLGLYVFA 149
+R R L +
Sbjct: 812 TRPRSSLLILG 822
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 16/95 (16%)
Query: 65 AHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTA- 123
A +I I++ Y Q ++R + P IG +V+++QGQ+ D IL+S VR++
Sbjct: 1128 ADQIGIITPYQKQVKMLRSMFIGTDVVMPKIG------SVEEFQGQERDIILISTVRSSE 1181
Query: 124 ---------SVGHLRDVRRLIVAMSRARLGLYVFA 149
S+G +R +RL VA+SRAR + +F
Sbjct: 1182 EILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFG 1216
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 68 ITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTA---- 123
I I++ Y QK +I+ + P +V TVD +QG+Q D I+++ VR +
Sbjct: 2318 IGIITHYKAQKTMIQKDLEKEFDKK----GPAEVDTVDAFQGRQKDCIIVTCVRASAVQG 2373
Query: 124 SVGHLRDVRRLIVAMSRARLGLYVFARV 151
S+G L ++RL V ++RA+ L++ +
Sbjct: 2374 SIGFLASLQRLNVTITRAKYSLFILGHL 2401
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 12/90 (13%)
Query: 68 ITILSTYNGQKHLIRDVINTRCADNPLIGR--PHKVTTVDKYQGQQNDYILLSLVRT--- 122
I I++ Y QK +I+ ++ R P +V TVD +QG+Q D ++++ VR
Sbjct: 2342 IGIITHYKAQKTMIQKDLDKE------FDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSI 2395
Query: 123 -ASVGHLRDVRRLIVAMSRARLGLYVFARV 151
S+G L ++RL V ++RA+ L++ +
Sbjct: 2396 QGSIGFLASLQRLNVTITRAKYSLFILGHL 2425
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 26/150 (17%)
Query: 29 FNGV-GESE---PNPYFYQNLAEAE----YCVALFMYMRLLGYPA---HKITILSTYNGQ 77
F+GV GE E +P F+ N AE E Y L G P +I I+S Y Q
Sbjct: 775 FHGVCGEDEREAKSPSFF-NTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQ 833
Query: 78 KHLIRDVINTR---CADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTAS---------- 124
IR I ++ P IG+ KV +V+++QGQ+ IL+S VR+ S
Sbjct: 834 VEKIRLAITSKDPVLRALPDIGQ-LKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFR 892
Query: 125 VGHLRDVRRLIVAMSRARLGLYVFARVSLF 154
+G L++ +RL VA++RA+ L V ++
Sbjct: 893 LGFLKNPKRLNVALTRAKALLIVVGNAAVL 922
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 56 MYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYI 115
+Y++ P+ I I++ Y Q +I + N+ L +V TVDKYQG+ I
Sbjct: 926 LYLKAGCRPS-DIGIIAPYRQQLKMISNYFNS------LSASAVEVNTVDKYQGRDKSVI 978
Query: 116 LLSLVRTASVGH----LRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRP 171
++S VR+ G L+D RRL VA++RA+ L + V N F+ +
Sbjct: 979 IVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTL-NRFDCLEQLICNLKTE 1037
Query: 172 QQLHIVP---HETFP 183
Q++ +P HE FP
Sbjct: 1038 NQIYDLPEGAHEHFP 1052
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N EA+ L G I I++ Y Q +I + N+ L +V T
Sbjct: 908 NWIEAKLVFCLTKLFLKAGCRPSDIGIIAPYRQQLKVISNYFNS------LSASAVEVNT 961
Query: 104 VDKYQGQQNDYILLSLVRTASVGH----LRDVRRLIVAMSRARLGLYVFARV 151
VDKYQG+ I++S VR+ G L+D RRL VA++RA+ L + V
Sbjct: 962 VDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCV 1013
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 44 NLAEAEYCVALFMYMRLLG-YP----AHKITILSTYNGQKHLIRDVINTRCADNPLIGRP 98
NL E E+ L +Y RL+ YP + ++ I+S YN Q +D +
Sbjct: 620 NLDEVEFV--LLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFKDRFKEMFGTEA--EKV 675
Query: 99 HKVTTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVS--- 152
+ TVD +QG++ D + S VR +G L + RR+ V ++RA+ + V +
Sbjct: 676 VDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATLK 735
Query: 153 ---LFRNCFELTPAFNQLM 168
L++N E N+L
Sbjct: 736 SDPLWKNLIESAEQRNRLF 754
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 55 FMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDY 114
F+ G I I+S Y Q +I D++ R +N + +V T+DKYQG+
Sbjct: 859 FLNTEKAGCRPSDIGIISPYRHQLKVITDLM-ARLKENRV-----EVNTIDKYQGRDKSI 912
Query: 115 ILLSLVRTA---SVGH-LRDVRRLIVAMSRARLGLYVFARVSLFR 155
I++S VR + ++G L+D RRL VA++RA+ L + V R
Sbjct: 913 IIVSFVRNSNDENLGALLKDWRRLNVAITRAKHKLIMVGCVPSLR 957
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 62 GYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVR 121
G A I +++ YN Q L+R ++ + +P + ++ +VD +QG++ + +LL+ VR
Sbjct: 528 GVQAGDIAVIAPYNLQVDLLRQSLSNK---HPEL----EIKSVDGFQGREKEAVLLTFVR 580
Query: 122 T---ASVGHLRDVRRLIVAMSRARLGLYVFA 149
+ VG L + RR+ VA++RAR + V
Sbjct: 581 SNRKGEVGFLAEDRRINVAVTRARRHVAVIC 611
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA+ V L G I I++ Y Q +I D++ +G +V T
Sbjct: 913 NIMEAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQLKVISDLLAQSS-----VGMV-EVNT 966
Query: 104 VDKYQGQQNDYILLSLVRTASVGH----LRDVRRLIVAMSRARLGLYVFARV 151
VD+YQG+ +++S VR+ G L+D RRL VA++RA+ L + V
Sbjct: 967 VDRYQGRDKSIVVVSFVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGCV 1018
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 62 GYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVR 121
G A I +++ YN Q L+R ++ + +P + ++ +VD +QG++ + ++L+ VR
Sbjct: 528 GVQAGDIAVIAPYNLQVDLLRQSLSNK---HPEL----EIKSVDGFQGREKEAVILTFVR 580
Query: 122 T---ASVGHLRDVRRLIVAMSRARLGLYVFA 149
+ VG L + RR+ VA++RAR + V
Sbjct: 581 SNRKGEVGFLAEDRRINVAVTRARRHVAVIC 611
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 62 GYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVR 121
G A I +++ YN Q L+R ++ + +P + ++ +VD +QG++ + ++L+ VR
Sbjct: 528 GVHAGDIAVIAPYNLQVDLLRQSLSNK---HPEL----EIKSVDGFQGREKEAVILTFVR 580
Query: 122 T---ASVGHLRDVRRLIVAMSRARLGLYVFA 149
+ VG L + RR+ VA++RAR + V
Sbjct: 581 SNRKGEVGFLAEDRRINVAVTRARRHVAVIC 611
>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) GN=rep
PE=3 SV=1
Length = 7094
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 66 HKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASV 125
HK +S YN Q R V+ + TVD QG + DY++ S +TA
Sbjct: 5803 HKAVFISPYNSQNFAARRVLGL------------QTQTVDSAQGSEYDYVIYS--QTAET 5848
Query: 126 GHLRDVRRLIVAMSRARLG-LYVFARVSLF 154
H +V R VA++RA+ G L V + + LF
Sbjct: 5849 AHSVNVNRFNVAITRAKKGILCVMSNMQLF 5878
>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain
98TXSF-110-ENT) GN=rep PE=3 SV=1
Length = 7094
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 66 HKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASV 125
HK +S YN Q + V+ + TVD QG + DY++ S +TA
Sbjct: 5803 HKAVFISPYNSQNFAAKRVLGL------------QTQTVDSAQGSEYDYVIYS--QTAET 5848
Query: 126 GHLRDVRRLIVAMSRARLG-LYVFARVSLF 154
H +V R VA++RA+ G L V + + LF
Sbjct: 5849 AHSVNVNRFNVAITRAKKGILCVMSNMQLF 5878
>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain
98TXSF-110-LUN) GN=rep PE=3 SV=1
Length = 7094
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 66 HKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASV 125
HK +S YN Q + V+ + TVD QG + DY++ S +TA
Sbjct: 5803 HKAVFISPYNSQNFAAKRVLGLQ------------TQTVDSAQGSEYDYVIYS--QTAET 5848
Query: 126 GHLRDVRRLIVAMSRARLG-LYVFARVSLF 154
H +V R VA++RA+ G L V + + LF
Sbjct: 5849 AHSVNVNRFNVAITRAKKGILCVMSNMQLF 5878
>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 GN=rep PE=3 SV=1
Length = 7095
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 66 HKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASV 125
HK +S YN Q + V+ + TVD QG + DY++ S +TA
Sbjct: 5803 HKAVFISPYNSQNFAAKRVLGLQ------------TQTVDSAQGSEYDYVIYS--QTAET 5848
Query: 126 GHLRDVRRLIVAMSRARLG-LYVFARVSLF 154
H +V R VA++RA+ G L V + + LF
Sbjct: 5849 AHSVNVNRFNVAITRAKKGILCVMSNMQLF 5878
>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec)
GN=rep PE=3 SV=1
Length = 7059
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 66 HKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASV 125
HK +S YN Q + V+ + TVD QG + DY++ S +TA
Sbjct: 5803 HKAVFISPYNSQNFAAKRVLGL------------QTQTVDSAQGSEYDYVIYS--QTAET 5848
Query: 126 GHLRDVRRLIVAMSRARLG-LYVFARVSLF 154
H +V R VA++RA+ G L V + + LF
Sbjct: 5849 AHSVNVNRFNVAITRAKKGILCVMSNMQLF 5878
>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1)
GN=rep PE=3 SV=1
Length = 7182
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 71 LSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASVGHLRD 130
+S YN Q ++ + V+ + TVD QG + DY++ S +TA H +
Sbjct: 5896 ISPYNSQNYVAKRVLGVQ------------TQTVDSAQGSEYDYVIYS--QTAETAHSVN 5941
Query: 131 VRRLIVAMSRARLGLY-VFARVSLFRN 156
V R VA++RA+ G++ V + + LF +
Sbjct: 5942 VNRFNVAITRAKKGIFCVMSNMQLFES 5968
>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5)
GN=rep PE=3 SV=1
Length = 7132
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 71 LSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASVGHLRD 130
+S YN Q ++ + V+ + TVD QG + DY++ S +TA H +
Sbjct: 5846 ISPYNSQNYVAKRVLGVQ------------TQTVDSAQGSEYDYVIYS--QTAETAHSVN 5891
Query: 131 VRRLIVAMSRARLGLY-VFARVSLFRN 156
V R VA++RA+ G++ V + + LF +
Sbjct: 5892 VNRFNVAITRAKKGIFCVMSNMQLFES 5918
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,205,783
Number of Sequences: 539616
Number of extensions: 4919766
Number of successful extensions: 19847
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 19599
Number of HSP's gapped (non-prelim): 244
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)