Query psy12660
Match_columns 294
No_of_seqs 233 out of 1341
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 16:17:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 4.4E-32 1.5E-36 275.7 11.8 147 18-175 483-632 (646)
2 2gk6_A Regulator of nonsense t 99.9 1.4E-26 4.7E-31 234.8 10.2 156 20-182 455-613 (624)
3 2xzl_A ATP-dependent helicase 99.9 2.5E-26 8.5E-31 239.4 10.0 152 20-178 633-787 (802)
4 2wjy_A Regulator of nonsense t 99.9 3.3E-26 1.1E-30 238.3 10.8 155 19-180 630-787 (800)
5 3dmn_A Putative DNA helicase; 99.2 3.7E-11 1.3E-15 102.9 11.3 103 45-150 44-153 (174)
6 3e1s_A Exodeoxyribonuclease V, 98.3 5.4E-07 1.8E-11 90.6 5.7 52 102-155 494-545 (574)
7 3upu_A ATP-dependent DNA helic 97.6 0.00013 4.5E-09 70.7 7.6 48 101-148 412-459 (459)
8 1w36_D RECD, exodeoxyribonucle 97.4 0.00012 4.1E-09 73.8 4.7 54 99-154 533-586 (608)
9 3lfu_A DNA helicase II; SF1 he 97.4 0.00074 2.5E-08 67.3 10.3 53 98-150 553-615 (647)
10 3vkw_A Replicase large subunit 97.0 0.00053 1.8E-08 67.0 5.4 68 69-149 351-420 (446)
11 1uaa_A REP helicase, protein ( 95.9 0.004 1.4E-07 62.9 3.8 55 98-152 551-614 (673)
12 1pjr_A PCRA; DNA repair, DNA r 95.2 0.012 4E-07 60.3 4.1 55 97-151 557-621 (724)
13 3u4q_A ATP-dependent helicase/ 94.7 0.013 4.5E-07 63.5 3.1 58 97-154 786-887 (1232)
14 1w36_B RECB, exodeoxyribonucle 94.5 0.017 5.9E-07 62.3 3.2 52 98-149 735-817 (1180)
15 1w36_C RECC, exodeoxyribonucle 86.4 0.95 3.2E-05 48.7 6.5 76 96-171 656-755 (1122)
16 3u4q_B ATP-dependent helicase/ 78.5 3.6 0.00012 44.1 7.2 75 96-170 585-691 (1166)
17 1pjr_A PCRA; DNA repair, DNA r 71.2 3.8 0.00013 41.6 4.9 45 44-88 329-374 (724)
18 1uaa_A REP helicase, protein ( 67.8 3.7 0.00013 41.0 3.9 45 44-88 320-365 (673)
19 3lfu_A DNA helicase II; SF1 he 57.7 15 0.00052 35.9 6.2 67 50-119 38-116 (647)
20 3vkw_A Replicase large subunit 45.4 18 0.00061 35.0 4.3 83 66-158 185-276 (446)
21 3u4q_B ATP-dependent helicase/ 39.2 29 0.001 37.0 5.2 44 45-88 321-366 (1166)
22 1w36_C RECC, exodeoxyribonucle 29.4 45 0.0015 35.7 4.6 45 44-88 382-429 (1122)
23 1w36_B RECB, exodeoxyribonucle 29.0 61 0.0021 34.7 5.6 44 45-88 516-574 (1180)
24 2nxv_A ATP synthase subunits r 25.9 1.3E+02 0.0045 25.4 6.3 85 67-169 17-101 (249)
25 2rr3_B OSBP, oxysterol-binding 23.8 27 0.00092 23.0 1.0 11 273-283 9-19 (47)
26 3upu_A ATP-dependent DNA helic 23.5 1.5E+02 0.005 27.8 6.6 34 50-85 61-94 (459)
27 3u4q_A ATP-dependent helicase/ 22.9 70 0.0024 34.5 4.6 44 45-88 549-605 (1232)
28 2jss_B Uncharacterized protein 20.6 50 0.0017 23.2 1.9 16 276-291 3-18 (62)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.97 E-value=4.4e-32 Score=275.67 Aligned_cols=147 Identities=25% Similarity=0.310 Sum_probs=126.4
Q ss_pred CCCceEEecCCCCCCccccCCCCcccCHHHHHHHHHHHHHHHHcCCCCCceEEEeccHHHHHHHHHHHHhhcCCCCCCCC
Q psy12660 18 VYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGR 97 (294)
Q Consensus 18 ~~~~q~Idv~~~~G~~e~~~~~~s~~N~~EA~~vv~lv~~L~~~g~~~~~IgIITpY~~Q~~lI~~~L~~~~~~~~~~~~ 97 (294)
..++.|+|+.+.......+..+.|+.|..||++|+.+++.|+..|+++++|||||||++|+.+|++.|.... .
T Consensus 483 ~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~l~~~~-------~ 555 (646)
T 4b3f_X 483 GVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRH-------P 555 (646)
T ss_dssp TCSEEEEECTTSSCCCCC-----CCCCHHHHHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTTC-------T
T ss_pred CCceEEEecCCCccccccccCCccccCHHHHHHHHHHHHHHHhcCCCcCcEEEECCCHHHHHHHHHHHHHhC-------C
Confidence 447889999875444556667889999999999999999999999999999999999999999999997653 2
Q ss_pred CceeccccCCCCCCCceEEEeeeecC---CCCCcCcchhhhhhcccccceeEEEechhhhhccccchHHHHHHHhccccc
Q psy12660 98 PHKVTTVDKYQGQQNDYILLSLVRTA---SVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQL 174 (294)
Q Consensus 98 ~i~V~TVd~fQG~E~DvVIlS~Vrs~---~~gfL~d~rRLNVAlSRAr~gLiIVGn~~~l~~~~~~~~~~~~l~~~~~~l 174 (294)
.++|+|||+|||+|+|+||+|+||++ .+|||.|+||||||+||||.+||||||..+|++ .++|+.|++++...
T Consensus 556 ~i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~liivGn~~~l~~----~~~~~~li~~~~~~ 631 (646)
T 4b3f_X 556 ELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNN----HAFLKTLVEYFTQH 631 (646)
T ss_dssp TCEEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTEEEEEEEEECHHHHTT----SHHHHHHHHHHHHS
T ss_pred CCEECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEEeEhhhhhCeEEEEEchHHhcC----CHHHHHHHHHHHHC
Confidence 48999999999999999999999986 689999999999999999999999999999987 57888888777654
Q ss_pred C
Q psy12660 175 H 175 (294)
Q Consensus 175 ~ 175 (294)
.
T Consensus 632 g 632 (646)
T 4b3f_X 632 G 632 (646)
T ss_dssp S
T ss_pred C
Confidence 3
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.93 E-value=1.4e-26 Score=234.83 Aligned_cols=156 Identities=24% Similarity=0.390 Sum_probs=128.6
Q ss_pred CceEEecCCCCCCccccCCCCcccCHHHHHHHHHHHHHHHHcCCCCCceEEEeccHHHHHHHHHHHHhhcCCCCCCCCCc
Q psy12660 20 DFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPH 99 (294)
Q Consensus 20 ~~q~Idv~~~~G~~e~~~~~~s~~N~~EA~~vv~lv~~L~~~g~~~~~IgIITpY~~Q~~lI~~~L~~~~~~~~~~~~~i 99 (294)
+..|+++. |..+....+.|+.|..||+.|+.++..|...|+++++|||||||++|+.+|++.|.............+
T Consensus 455 p~~~~~~~---g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v 531 (624)
T 2gk6_A 455 PMFFYVTQ---GQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEV 531 (624)
T ss_dssp CEEEEECC---CCEECCTTSSCCEEHHHHHHHHHHHHHHHTTTCCGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHS
T ss_pred CEEEEEcC---CcceecCCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCHHHHHHHHHHHHhhccccccccCce
Confidence 45666665 445555677899999999999999999998999999999999999999999999976432111111247
Q ss_pred eeccccCCCCCCCceEEEeeeecC---CCCCcCcchhhhhhcccccceeEEEechhhhhccccchHHHHHHHhcccccCc
Q psy12660 100 KVTTVDKYQGQQNDYILLSLVRTA---SVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHI 176 (294)
Q Consensus 100 ~V~TVd~fQG~E~DvVIlS~Vrs~---~~gfL~d~rRLNVAlSRAr~gLiIVGn~~~l~~~~~~~~~~~~l~~~~~~l~l 176 (294)
.|+|||+|||+|+|+||+|+|+++ ..||+.|.||||||+||||.+|||||+..+|.. .+.|+.|+.++....+
T Consensus 532 ~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l~~----~~~~~~li~~~~~~~~ 607 (624)
T 2gk6_A 532 EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK----QPLWNHLLNYYKEQKV 607 (624)
T ss_dssp EEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEEEEEEEEECHHHHTT----SHHHHHHHHHHHHTTC
T ss_pred EEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhhCcEEEEECHHHHcc----ChHHHHHHHHHHHCCC
Confidence 999999999999999999999986 579999999999999999999999999999987 6899999999887766
Q ss_pred ccCCCC
Q psy12660 177 VPHETF 182 (294)
Q Consensus 177 ~~~e~~ 182 (294)
+.....
T Consensus 608 ~~~~~~ 613 (624)
T 2gk6_A 608 LVEGPL 613 (624)
T ss_dssp CCCSCG
T ss_pred EEeCCH
Confidence 654433
No 3
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.5e-26 Score=239.38 Aligned_cols=152 Identities=26% Similarity=0.397 Sum_probs=129.2
Q ss_pred CceEEecCCCCCCccccCCCCcccCHHHHHHHHHHHHHHHHcCCCCCceEEEeccHHHHHHHHHHHHhhcCCCCCCCCCc
Q psy12660 20 DFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPH 99 (294)
Q Consensus 20 ~~q~Idv~~~~G~~e~~~~~~s~~N~~EA~~vv~lv~~L~~~g~~~~~IgIITpY~~Q~~lI~~~L~~~~~~~~~~~~~i 99 (294)
+..|+++. |..+....+.|+.|..||++|+.+++.|...|+++++|||||||++|+.+|++.|.............+
T Consensus 633 p~~f~~~~---g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v 709 (802)
T 2xzl_A 633 PMMFWANY---GREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKV 709 (802)
T ss_dssp CEEEEECC---CCCEECTTSSSEECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTS
T ss_pred CEEEEEcC---CceeecCCCCCcCCHHHHHHHHHHHHHHHHcCCCcccEEEEcccHHHHHHHHHHHHHccccccccccce
Confidence 45677765 445556678899999999999999999999999999999999999999999999987532111111358
Q ss_pred eeccccCCCCCCCceEEEeeeecC---CCCCcCcchhhhhhcccccceeEEEechhhhhccccchHHHHHHHhcccccCc
Q psy12660 100 KVTTVDKYQGQQNDYILLSLVRTA---SVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHI 176 (294)
Q Consensus 100 ~V~TVd~fQG~E~DvVIlS~Vrs~---~~gfL~d~rRLNVAlSRAr~gLiIVGn~~~l~~~~~~~~~~~~l~~~~~~l~l 176 (294)
.|+|||+|||+|+|+||||+||++ ..||+.|+||||||+||||.+|||||+..+|.+ .++|+.|++++....+
T Consensus 710 ~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~----~~~w~~ll~~~~~~~~ 785 (802)
T 2xzl_A 710 EVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLAR----NTLWNHLLIHFREKGC 785 (802)
T ss_dssp EEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTT----SHHHHHHHHHHHHHTC
T ss_pred EEcchhhcCCCccCEEEEEeccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHhcc----ChHHHHHHHHHHHcCC
Confidence 999999999999999999999986 679999999999999999999999999999987 6899999988877655
Q ss_pred cc
Q psy12660 177 VP 178 (294)
Q Consensus 177 ~~ 178 (294)
+.
T Consensus 786 ~~ 787 (802)
T 2xzl_A 786 LV 787 (802)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 4
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.93 E-value=3.3e-26 Score=238.33 Aligned_cols=155 Identities=24% Similarity=0.383 Sum_probs=131.0
Q ss_pred CCceEEecCCCCCCccccCCCCcccCHHHHHHHHHHHHHHHHcCCCCCceEEEeccHHHHHHHHHHHHhhcCCCCCCCCC
Q psy12660 19 YDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRP 98 (294)
Q Consensus 19 ~~~q~Idv~~~~G~~e~~~~~~s~~N~~EA~~vv~lv~~L~~~g~~~~~IgIITpY~~Q~~lI~~~L~~~~~~~~~~~~~ 98 (294)
.++.|+++. |..+....+.|+.|..||+.|+.+++.|...|+++++|||||||++|+.+|++.|.............
T Consensus 630 ~p~~f~~~~---g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~ 706 (800)
T 2wjy_A 630 KPMFFYVTQ---GQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQE 706 (800)
T ss_dssp SCEEEEECC---CCCEECSSBSCEECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHT
T ss_pred CCEEEEEcC---CceeecCCCCcccCHHHHHHHHHHHHHHHHcCCCcccEEEEeccHHHHHHHHHHHHhcCcccccccCc
Confidence 356777776 44555567889999999999999999999999999999999999999999999998754321111235
Q ss_pred ceeccccCCCCCCCceEEEeeeecC---CCCCcCcchhhhhhcccccceeEEEechhhhhccccchHHHHHHHhcccccC
Q psy12660 99 HKVTTVDKYQGQQNDYILLSLVRTA---SVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLH 175 (294)
Q Consensus 99 i~V~TVd~fQG~E~DvVIlS~Vrs~---~~gfL~d~rRLNVAlSRAr~gLiIVGn~~~l~~~~~~~~~~~~l~~~~~~l~ 175 (294)
+.|+|||+|||+|+|+||+|+|+++ .+||+.|.||||||+||||.+|||||+..+|.. .++|+.|+.++....
T Consensus 707 v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~----~~~w~~ll~~~~~~~ 782 (800)
T 2wjy_A 707 VEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK----QPLWNHLLNYYKEQK 782 (800)
T ss_dssp SEEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTS----SHHHHHHHHHHHHTT
T ss_pred eEEccccccCCCcCCEEEEEecCCCCccccccccCcchhhhhHHhhhccEEEEECHHHhcc----CHHHHHHHHHHHHCC
Confidence 8999999999999999999999986 478999999999999999999999999999986 689999999887766
Q ss_pred cccCC
Q psy12660 176 IVPHE 180 (294)
Q Consensus 176 l~~~e 180 (294)
++...
T Consensus 783 ~~~~~ 787 (800)
T 2wjy_A 783 VLVEG 787 (800)
T ss_dssp CEEES
T ss_pred CEEeC
Confidence 65443
No 5
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.25 E-value=3.7e-11 Score=102.86 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeccHHHHHHHHHHHHhhcC-------CCCCCCCCceeccccCCCCCCCceEEE
Q psy12660 45 LAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCA-------DNPLIGRPHKVTTVDKYQGQQNDYILL 117 (294)
Q Consensus 45 ~~EA~~vv~lv~~L~~~g~~~~~IgIITpY~~Q~~lI~~~L~~~~~-------~~~~~~~~i~V~TVd~fQG~E~DvVIl 117 (294)
.+|+..|+..++. ...| ..+|+||++.+.|...|.+.|..... ........+.|.|++.++|.|+|.||+
T Consensus 44 ~~e~~~i~~~I~~-~~~g--~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~ 120 (174)
T 3dmn_A 44 EAGVDQVVDQLAM-NDSE--RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIV 120 (174)
T ss_dssp HHHHHHHHHHHHH-HHHT--TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEE
T ss_pred HHHHHHHHHHHHH-hccC--CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEE
Confidence 4788999988877 4455 57999999999999999999987521 111233468999999999999999999
Q ss_pred eeeecCCCCCcCcchhhhhhcccccceeEEEec
Q psy12660 118 SLVRTASVGHLRDVRRLIVAMSRARLGLYVFAR 150 (294)
Q Consensus 118 S~Vrs~~~gfL~d~rRLNVAlSRAr~gLiIVGn 150 (294)
..+.........+.+.|+||+||||..|+|++.
T Consensus 121 ~~~~~~~~~~~~~~~llYva~TRA~~~l~~~~~ 153 (174)
T 3dmn_A 121 WNANQENYQREDERQLLYTICSRAMHELTLVAV 153 (174)
T ss_dssp ETCBTTTSCSGGGHHHHHHHHTTEEEEEEEEEE
T ss_pred ecCCcccCCChhhhceeEEEecCcccEEEEEeC
Confidence 887665444456788899999999999999975
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.29 E-value=5.4e-07 Score=90.60 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=44.6
Q ss_pred ccccCCCCCCCceEEEeeeecCCCCCcCcchhhhhhcccccceeEEEechhhhh
Q psy12660 102 TTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155 (294)
Q Consensus 102 ~TVd~fQG~E~DvVIlS~Vrs~~~gfL~d~rRLNVAlSRAr~gLiIVGn~~~l~ 155 (294)
.|||++||.|+|.||+.+.... ..+.+.+.++||+||||..|+|||+...|.
T Consensus 494 ~TIHksQGsEfd~Vil~l~~~~--~~~l~r~LlYvAiTRAk~~l~lvg~~~~l~ 545 (574)
T 3e1s_A 494 LTVHRAQGSEWGTVLGVLHEAH--MPMLSRNLVYTALTRARDRFFSAGSASAWQ 545 (574)
T ss_dssp EEHHHHTTCCEEEEEEEECGGG--GGGCCHHHHHHHHHTEEEEEEEEECHHHHH
T ss_pred eeHHHhCCccCCeEEEEcCCcc--ccccccceEEEEeeeeeeEEEEEECHHHHH
Confidence 5999999999999999887553 234578899999999999999999987764
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.56 E-value=0.00013 Score=70.70 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=36.1
Q ss_pred eccccCCCCCCCceEEEeeeecCCCCCcCcchhhhhhcccccceeEEE
Q psy12660 101 VTTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVF 148 (294)
Q Consensus 101 V~TVd~fQG~E~DvVIlS~Vrs~~~gfL~d~rRLNVAlSRAr~gLiIV 148 (294)
+.|+|+.||.|+|.|++..........-.+.|.++||+||||..|++|
T Consensus 412 ~~t~h~~kG~e~~~v~~~~~~~~~~~~~~~~~~~yva~tRa~~~l~~~ 459 (459)
T 3upu_A 412 ASTFHKAQGMSVDRAFIYTPCIHYADVELAQQLLYVGVTRGRYDVFYV 459 (459)
T ss_dssp EEETGGGTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHHEEEEEEEC
T ss_pred EEEEEeccCCCCCEEEEecCCCCCcChHHHhheeeeeecceeeEEEeC
Confidence 578999999999999996654321111113566999999999999985
No 8
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.36 E-value=0.00012 Score=73.81 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=44.2
Q ss_pred ceeccccCCCCCCCceEEEeeeecCCCCCcCcchhhhhhcccccceeEEEechhhh
Q psy12660 99 HKVTTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVFARVSLF 154 (294)
Q Consensus 99 i~V~TVd~fQG~E~DvVIlS~Vrs~~~gfL~d~rRLNVAlSRAr~gLiIVGn~~~l 154 (294)
..+.|||+.||.|.|.||+.+..... .+.+.+.++||+||||..++|+|+...|
T Consensus 533 ~~a~TihksqG~e~~~v~~~~~~~~~--~~~~~~~~Yva~tRa~~~l~l~~~~~~l 586 (608)
T 1w36_D 533 TWAMTVHKSQGSEFDHAALILPSQRT--PVVTRELVYTAVTRARRRLSLYADERIL 586 (608)
T ss_dssp CSEEETTTTTTCCBSEEEEECCSSCC--SSSCHHHHHHHHTTBSSCEEEECCTTHH
T ss_pred EEEEEEEecccccCCeEEEEeCCCcc--chhhhhhHHhhhhhhhceEEEEECHHHH
Confidence 45789999999999999998754332 2336788999999999999999987554
No 9
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.35 E-value=0.00074 Score=67.32 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=40.7
Q ss_pred CceeccccCCCCCCCceEEEeeeecCCCCC---------cC-cchhhhhhcccccceeEEEec
Q psy12660 98 PHKVTTVDKYQGQQNDYILLSLVRTASVGH---------LR-DVRRLIVAMSRARLGLYVFAR 150 (294)
Q Consensus 98 ~i~V~TVd~fQG~E~DvVIlS~Vrs~~~gf---------L~-d~rRLNVAlSRAr~gLiIVGn 150 (294)
.|.+.|+|+..|.|+|+|+|.-+....... +. +.|.+.||+||||..||+...
T Consensus 553 ~V~l~TiH~aKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~~eeErrL~YVa~TRAk~~L~ls~~ 615 (647)
T 3lfu_A 553 AVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYA 615 (647)
T ss_dssp CEEEEETGGGTTCCEEEEEECCCBTBTTTBTTCC--CTTHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cEEEEeeecccCccCCEEEEeCCcCCCCCCcccccCchhHHHHHHHHHHHHhHHhhheEEEEe
Confidence 478999999999999999997765442111 11 235689999999999999754
No 10
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.05 E-value=0.00053 Score=67.04 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=49.7
Q ss_pred EEEeccHHHHHHHHHHHHhhcCCCCCCCCCce-eccccCCCCCCCceEEEeeeecCC-CCCcCcchhhhhhcccccceeE
Q psy12660 69 TILSTYNGQKHLIRDVINTRCADNPLIGRPHK-VTTVDKYQGQQNDYILLSLVRTAS-VGHLRDVRRLIVAMSRARLGLY 146 (294)
Q Consensus 69 gIITpY~~Q~~lI~~~L~~~~~~~~~~~~~i~-V~TVd~fQG~E~DvVIlS~Vrs~~-~gfL~d~rRLNVAlSRAr~gLi 146 (294)
-|||+..+.+.+|.+. ... +.||+++||.++|.|.+-...... ..|..+...++||+||||.+|.
T Consensus 351 ~iLtftq~~k~~L~~~-------------G~~~~~Tv~e~QG~tf~~Vtlvr~~~~~~~l~~~~~~~~~VALTRh~~~L~ 417 (446)
T 3vkw_A 351 KILTFTQSDKEALLSR-------------GYADVHTVHEVQGETYADVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLK 417 (446)
T ss_dssp EEEESSHHHHHHHHTT-------------TCCSCEETGGGTTCCEEEEEEEECCCSCCTTCSTTCHHHHHHHSSEEEEEE
T ss_pred eEEEcCHHHHHHHHHh-------------CCCCccCHHHcCCcccCeEEEEECCCCCcccccCCccceEEEeecCCCEEE
Confidence 5677777777766531 123 789999999999998874333222 2233578899999999999999
Q ss_pred EEe
Q psy12660 147 VFA 149 (294)
Q Consensus 147 IVG 149 (294)
++.
T Consensus 418 ~~t 420 (446)
T 3vkw_A 418 YYT 420 (446)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 11
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.94 E-value=0.004 Score=62.85 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=42.6
Q ss_pred CceeccccCCCCCCCceEEEeeeecCCCC---------CcCcchhhhhhcccccceeEEEechh
Q psy12660 98 PHKVTTVDKYQGQQNDYILLSLVRTASVG---------HLRDVRRLIVAMSRARLGLYVFARVS 152 (294)
Q Consensus 98 ~i~V~TVd~fQG~E~DvVIlS~Vrs~~~g---------fL~d~rRLNVAlSRAr~gLiIVGn~~ 152 (294)
.|.|.|+|+..|.|+|+|++.-+...... .-...|.+.||+||||..||+.+...
T Consensus 551 ~V~l~TiH~sKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~EErRL~YVA~TRAk~~L~ls~~~~ 614 (673)
T 1uaa_A 551 QVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKE 614 (673)
T ss_dssp SEEEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCHHHHHHHHHHHHTEEEEEEEEECSS
T ss_pred eeEEEeeeecccccCCEEEEecCcCCCCCCcccCcchhHHHHHHHHHHHHHhhhheEEEEEecc
Confidence 48999999999999999999766543211 11245568999999999999987543
No 12
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.20 E-value=0.012 Score=60.29 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=42.0
Q ss_pred CCceeccccCCCCCCCceEEEeeeecCCCCC---------c-CcchhhhhhcccccceeEEEech
Q psy12660 97 RPHKVTTVDKYQGQQNDYILLSLVRTASVGH---------L-RDVRRLIVAMSRARLGLYVFARV 151 (294)
Q Consensus 97 ~~i~V~TVd~fQG~E~DvVIlS~Vrs~~~gf---------L-~d~rRLNVAlSRAr~gLiIVGn~ 151 (294)
..|.+.|+|+..|.|+++|++.-+....... + ...|.+.||+||||..||+....
T Consensus 557 d~V~lmTiH~aKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~eEErRL~YVaiTRA~~~L~ls~~~ 621 (724)
T 1pjr_A 557 DAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSAQ 621 (724)
T ss_dssp CCEEEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTCHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CeEEEEeeehhcCCCCCEEEEeCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHhheEEEEeec
Confidence 3588999999999999999997665432111 1 13455899999999999998653
No 13
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.72 E-value=0.013 Score=63.50 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=42.6
Q ss_pred CCceeccccCCCCCCCceEEEeeeecC------CCCCc--------------------------------------Ccch
Q psy12660 97 RPHKVTTVDKYQGQQNDYILLSLVRTA------SVGHL--------------------------------------RDVR 132 (294)
Q Consensus 97 ~~i~V~TVd~fQG~E~DvVIlS~Vrs~------~~gfL--------------------------------------~d~r 132 (294)
..|.|.|||+..|.|+++|||.-+... ..+++ ...|
T Consensus 786 d~V~ImTIH~SKGLEfpvVfl~gl~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~EE~R 865 (1232)
T 3u4q_A 786 DVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELR 865 (1232)
T ss_dssp CCEEEEEGGGTTTCCEEEEEEECTTSBCCCTTSCSSEEEETTTEEEECEEETTTTEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecchhccCCCCCEEEEccccccCCCcCCCCCeeeccccCcCcceecchhccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999876421 00000 0134
Q ss_pred hhhhhcccccceeEEEechhhh
Q psy12660 133 RLIVAMSRARLGLYVFARVSLF 154 (294)
Q Consensus 133 RLNVAlSRAr~gLiIVGn~~~l 154 (294)
.|.||+||||..|||.|...-+
T Consensus 866 LLYVAlTRAk~~L~l~~~~~~~ 887 (1232)
T 3u4q_A 866 VLYVALTRAKEKLFLIGSCKDH 887 (1232)
T ss_dssp HHHHHHHTEEEEEEEEEECSCH
T ss_pred HHHHHHHhhccEEEEEEEeCch
Confidence 4779999999999999976543
No 14
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=94.47 E-value=0.017 Score=62.29 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=38.7
Q ss_pred CceeccccCCCCCCCceEEEeeeecC----------CC--C-C------------------cCcchhhhhhcccccceeE
Q psy12660 98 PHKVTTVDKYQGQQNDYILLSLVRTA----------SV--G-H------------------LRDVRRLIVAMSRARLGLY 146 (294)
Q Consensus 98 ~i~V~TVd~fQG~E~DvVIlS~Vrs~----------~~--g-f------------------L~d~rRLNVAlSRAr~gLi 146 (294)
.|+|.|||+..|.|+++||+..+... .. + + ..+.|.+.||+||||..||
T Consensus 735 ~V~ImTIHkSKGLEfpvVfl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~Ee~RLlYVAlTRAk~~L~ 814 (1180)
T 1w36_B 735 LVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCS 814 (1180)
T ss_dssp SEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEEEEeccCCCcCCEEEEeccccCCCCCCCeeecCCCcceeecCCCcHHHHHHHHHHHHHHHhhHHhhhhcchhhheE
Confidence 48999999999999999999543210 00 0 0 0134669999999999999
Q ss_pred EEe
Q psy12660 147 VFA 149 (294)
Q Consensus 147 IVG 149 (294)
|..
T Consensus 815 l~~ 817 (1180)
T 1w36_B 815 LGV 817 (1180)
T ss_dssp EEE
T ss_pred EEe
Confidence 974
No 15
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=86.42 E-value=0.95 Score=48.66 Aligned_cols=76 Identities=13% Similarity=0.018 Sum_probs=51.6
Q ss_pred CCCceeccccCCCCCCCceEEEeeeecC-------CCCC--------cC-------cchhhhhhcccccceeEEEechhh
Q psy12660 96 GRPHKVTTVDKYQGQQNDYILLSLVRTA-------SVGH--------LR-------DVRRLIVAMSRARLGLYVFARVSL 153 (294)
Q Consensus 96 ~~~i~V~TVd~fQG~E~DvVIlS~Vrs~-------~~gf--------L~-------d~rRLNVAlSRAr~gLiIVGn~~~ 153 (294)
...|.|.|++...|.++|+|+|.-+... ..+| .. +.+.+.|||||||..|||......
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~~ 735 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBC
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCCc
Confidence 3469999999999999999988776653 1223 11 123389999999999999854332
Q ss_pred --hhccccchHHHHHHHhcc
Q psy12660 154 --FRNCFELTPAFNQLMIRP 171 (294)
Q Consensus 154 --l~~~~~~~~~~~~l~~~~ 171 (294)
..+...-+.++..|..+.
T Consensus 736 ~~~g~~~~PSrfL~eL~~~l 755 (1122)
T 1w36_C 736 IQDNSERFPSVLVQELIDYI 755 (1122)
T ss_dssp SSSCCBCCBCHHHHHHHHHH
T ss_pred CCCCCcCCCCHHHHHHHHHH
Confidence 112234567777776543
No 16
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=78.52 E-value=3.6 Score=44.11 Aligned_cols=75 Identities=15% Similarity=-0.004 Sum_probs=50.3
Q ss_pred CCCceeccccCCCCCCCceEEEeeeecC-------CCCCcCcc------------------------hhhhhhcccccce
Q psy12660 96 GRPHKVTTVDKYQGQQNDYILLSLVRTA-------SVGHLRDV------------------------RRLIVAMSRARLG 144 (294)
Q Consensus 96 ~~~i~V~TVd~fQG~E~DvVIlS~Vrs~-------~~gfL~d~------------------------rRLNVAlSRAr~g 144 (294)
...|.|.|++...|.++++|+|.-+... ..+||.+. +.+.||+|||+..
T Consensus 585 ~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~~~ 664 (1166)
T 3u4q_B 585 LDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDR 664 (1166)
T ss_dssp SSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCSSE
T ss_pred CCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcccCe
Confidence 3469999999999999999999877654 23444321 2378999999999
Q ss_pred eEEEechhhhh-ccccchHHHHHHHhc
Q psy12660 145 LYVFARVSLFR-NCFELTPAFNQLMIR 170 (294)
Q Consensus 145 LiIVGn~~~l~-~~~~~~~~~~~l~~~ 170 (294)
||+--....-. .....++++..|...
T Consensus 665 L~lsy~~~~~~~~~~~pS~~l~el~~~ 691 (1166)
T 3u4q_B 665 LYVSYPIADAEGKTLLPSMIVKRLEEL 691 (1166)
T ss_dssp EEEEEESSCSSSCCCCBCHHHHHHHHH
T ss_pred EEEEEeccCCCCCccCCCHHHHHHHHH
Confidence 99974322110 112235677766543
No 17
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=71.17 E-value=3.8 Score=41.63 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHHH-cCCCCCceEEEeccHHHHHHHHHHHHhh
Q psy12660 44 NLAEAEYCVALFMYMRL-LGYPAHKITILSTYNGQKHLIRDVINTR 88 (294)
Q Consensus 44 N~~EA~~vv~lv~~L~~-~g~~~~~IgIITpY~~Q~~lI~~~L~~~ 88 (294)
...||++|+..+..++. .|++.++|+||++.++|...|.+.|...
T Consensus 329 ~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~le~~L~~~ 374 (724)
T 1pjr_A 329 EADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKA 374 (724)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhheeeeeecchhHHHHHHHHHHc
Confidence 46799999999998886 7899999999999999999999999775
No 18
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=67.76 E-value=3.7 Score=41.01 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHHH-HcCCCCCceEEEeccHHHHHHHHHHHHhh
Q psy12660 44 NLAEAEYCVALFMYMR-LLGYPAHKITILSTYNGQKHLIRDVINTR 88 (294)
Q Consensus 44 N~~EA~~vv~lv~~L~-~~g~~~~~IgIITpY~~Q~~lI~~~L~~~ 88 (294)
...|++.|+..+..++ ..|++.++|+||++.+.|...|.+.|...
T Consensus 320 ~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~~~~~~l~~~L~~~ 365 (673)
T 1uaa_A 320 EEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQN 365 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGGTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccCCCccCEEEEEechhhHHHHHHHHHHC
Confidence 3579999999998887 67999999999999999999999999875
No 19
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=57.69 E-value=15 Score=35.91 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHc-CCCCCceEEEeccHHHHHHHHHHHHhhcCCCCCCCCCceeccccCC-----------CCCCCceEEE
Q psy12660 50 YCVALFMYMRLL-GYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKY-----------QGQQNDYILL 117 (294)
Q Consensus 50 ~vv~lv~~L~~~-g~~~~~IgIITpY~~Q~~lI~~~L~~~~~~~~~~~~~i~V~TVd~f-----------QG~E~DvVIl 117 (294)
.++..+.+|+.. |+++.+|.++|+-+.-...+++.|...+... ...+.|+|+|+| -|...++.|+
T Consensus 38 ~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~---~~~~~v~Tfhs~~~~il~~~~~~~~~~~~~~i~ 114 (647)
T 3lfu_A 38 VLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS---QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQIL 114 (647)
T ss_dssp HHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC---CTTCEEEEHHHHHHHHHHHTTGGGTCCTTCEEE
T ss_pred HHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc---cCCcEEEcHHHHHHHHHHHHHHHhCCCCCCEEe
Confidence 556666666665 7899999999999999999999988876432 145889999987 3555566666
Q ss_pred ee
Q psy12660 118 SL 119 (294)
Q Consensus 118 S~ 119 (294)
+.
T Consensus 115 ~~ 116 (647)
T 3lfu_A 115 DS 116 (647)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 20
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=45.42 E-value=18 Score=35.01 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=54.8
Q ss_pred CceEEEeccHHHHHHHHHHHHhhcCCCCCCCCCceeccccCC--CCC-----CCceEEEeeeecCCCCCcCcchhhh--h
Q psy12660 66 HKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKY--QGQ-----QNDYILLSLVRTASVGHLRDVRRLI--V 136 (294)
Q Consensus 66 ~~IgIITpY~~Q~~lI~~~L~~~~~~~~~~~~~i~V~TVd~f--QG~-----E~DvVIlS~Vrs~~~gfL~d~rRLN--V 136 (294)
..+.|+||-+.-+..|++.+..... .......|.|+|+| ++. +.|+||+.-+.-- +...+. .
T Consensus 185 ~~~lVlTpT~~aa~~l~~kl~~~~~---~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~------~~~~l~~l~ 255 (446)
T 3vkw_A 185 EEDLILVPGRQAAEMIRRRANASGI---IVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML------HTGCVNFLV 255 (446)
T ss_dssp TTCEEEESCHHHHHHHHHHHTTTSC---CCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS------CHHHHHHHH
T ss_pred CCeEEEeCCHHHHHHHHHHhhhcCc---cccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC------CHHHHHHHH
Confidence 5689999999999999988864311 01223678999988 333 2799999665322 223332 2
Q ss_pred hcccccceeEEEechhhhhccc
Q psy12660 137 AMSRARLGLYVFARVSLFRNCF 158 (294)
Q Consensus 137 AlSRAr~gLiIVGn~~~l~~~~ 158 (294)
++.++ ..+|++|+...+....
T Consensus 256 ~~~~~-~~vilvGD~~Qlp~v~ 276 (446)
T 3vkw_A 256 EMSLC-DIAYVYGDTQQIPYIN 276 (446)
T ss_dssp HHTTC-SEEEEEECTTSCCCCC
T ss_pred HhCCC-CEEEEecCcccccCcc
Confidence 33455 7899999998886543
No 21
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=39.18 E-value=29 Score=37.03 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHH-cCCCCCceEEEeccH-HHHHHHHHHHHhh
Q psy12660 45 LAEAEYCVALFMYMRL-LGYPAHKITILSTYN-GQKHLIRDVINTR 88 (294)
Q Consensus 45 ~~EA~~vv~lv~~L~~-~g~~~~~IgIITpY~-~Q~~lI~~~L~~~ 88 (294)
..|++.|+..+..+.. .|++.++|+||++-+ .|...|...|...
T Consensus 321 ~~Ea~~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~ 366 (1166)
T 3u4q_B 321 RAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADY 366 (1166)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHc
Confidence 4789999999988887 799999999999998 5888999999875
No 22
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=29.38 E-value=45 Score=35.71 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHHHH--cCCCCCceEEEecc-HHHHHHHHHHHHhh
Q psy12660 44 NLAEAEYCVALFMYMRL--LGYPAHKITILSTY-NGQKHLIRDVINTR 88 (294)
Q Consensus 44 N~~EA~~vv~lv~~L~~--~g~~~~~IgIITpY-~~Q~~lI~~~L~~~ 88 (294)
-..||++|...+..+.. .|++.++|+|+++- +.+...|..++...
T Consensus 382 ~~~Eae~Ia~~I~~l~~~~~g~~~~DIAVL~rd~~~~s~~ie~~f~~~ 429 (1122)
T 1w36_C 382 PQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSA 429 (1122)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCGGGEEEEESCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcccEEEECCCHHHHHHHHHHHHhhC
Confidence 45899999999988873 68999999999998 78999999998764
No 23
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=28.99 E-value=61 Score=34.75 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHH---------------cCCCCCceEEEeccHHHHHHHHHHHHhh
Q psy12660 45 LAEAEYCVALFMYMRL---------------LGYPAHKITILSTYNGQKHLIRDVINTR 88 (294)
Q Consensus 45 ~~EA~~vv~lv~~L~~---------------~g~~~~~IgIITpY~~Q~~lI~~~L~~~ 88 (294)
..||+.|...+..|+. .|++.++|+||+.-+.|...|.+.|...
T Consensus 516 ~~ea~~iA~~I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L~~~ 574 (1180)
T 1w36_B 516 STMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLL 574 (1180)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHHHHC
Confidence 4589999988888765 3578899999999999999999999875
No 24
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=25.88 E-value=1.3e+02 Score=25.40 Aligned_cols=85 Identities=5% Similarity=-0.079 Sum_probs=48.3
Q ss_pred ceEEEeccHHHHHHHHHHHHhhcCCCCCCCCCceeccccCCCCCCCceEEEeeeecCCCCCcCcchhhhhhcccccceeE
Q psy12660 67 KITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLY 146 (294)
Q Consensus 67 ~IgIITpY~~Q~~lI~~~L~~~~~~~~~~~~~i~V~TVd~fQG~E~DvVIlS~Vrs~~~gfL~d~rRLNVAlSRAr~gLi 146 (294)
.|+||++|+.. ..|.+.|...... +. -|.. ..+||+.-..+...|+ ..-.|.++.+|+--.+
T Consensus 17 ~iSII~~yN~~-~~l~~~l~sl~~s------------l~-~q~~-~EiIVVDn~s~d~~g~---a~a~N~Gi~~A~g~yl 78 (249)
T 2nxv_A 17 MFSVCSLVRDQ-AKYDRLLESFERF------------GF-TPDK-AEFLAADNREGNQFHG---FSWHKQMLPRCKGRYV 78 (249)
T ss_dssp SEEEEEEESCH-HHHHHHHHHHHHT------------TC-CTTT-EEEEEEECTTSCSCCT---TTHHHHHGGGCCSSEE
T ss_pred eEEEEEeeCCH-HHHHHHHHHHHHh------------cc-CCCc-EEEEEEECCCCCcccH---HHHHHHHHHhcCCCEE
Confidence 58888889984 5677777642110 00 0111 3455553221111222 3458999999998888
Q ss_pred EEechhhhhccccchHHHHHHHh
Q psy12660 147 VFARVSLFRNCFELTPAFNQLMI 169 (294)
Q Consensus 147 IVGn~~~l~~~~~~~~~~~~l~~ 169 (294)
++-|.+.+-...-+..+...+.+
T Consensus 79 ~fln~D~~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 79 IFCHEDVELVDRGYDDLVAAIEA 101 (249)
T ss_dssp EEEETTEECSSCCHHHHHHHHHH
T ss_pred EEECCCcccCccHHHHHHHHHHh
Confidence 88888776543334455554443
No 25
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=23.79 E-value=27 Score=22.98 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=7.3
Q ss_pred CCCCCCCCCch
Q psy12660 273 PGGDSDESGDE 283 (294)
Q Consensus 273 ~~~~~~~~~~~ 283 (294)
-|++||||||-
T Consensus 9 KGe~SdEDed~ 19 (47)
T 2rr3_B 9 KGDMSDEDDEN 19 (47)
T ss_dssp CCCSCCCCCSS
T ss_pred ccccccccccc
Confidence 46777777653
No 26
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=23.48 E-value=1.5e+02 Score=27.83 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCCCCceEEEeccHHHHHHHHHHH
Q psy12660 50 YCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVI 85 (294)
Q Consensus 50 ~vv~lv~~L~~~g~~~~~IgIITpY~~Q~~lI~~~L 85 (294)
.+..++.+|...|. ..|.++||-+.-...|++.+
T Consensus 61 ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 61 LTKFIIEALISTGE--TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp HHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHhhh
Confidence 45667777777665 57999999888887777766
No 27
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=22.88 E-value=70 Score=34.49 Aligned_cols=44 Identities=14% Similarity=-0.049 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHcC-------------CCCCceEEEeccHHHHHHHHHHHHhh
Q psy12660 45 LAEAEYCVALFMYMRLLG-------------YPAHKITILSTYNGQKHLIRDVINTR 88 (294)
Q Consensus 45 ~~EA~~vv~lv~~L~~~g-------------~~~~~IgIITpY~~Q~~lI~~~L~~~ 88 (294)
..||+.|...++.|+..| ++..+|+||+.-+.|...|.+.|...
T Consensus 549 ~~Ea~~iA~~I~~l~~~~~~v~d~~~~~~r~~~~~DIAIL~R~~~~~~~i~~~L~~~ 605 (1232)
T 3u4q_A 549 QFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQ 605 (1232)
T ss_dssp HHHHHHHHHHHHHHHTSCCCBC---CCCCBCCCSTTEEEEESSSSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCceecccccccCCCCcCCEEEEEECchhHHHHHHHHhHC
Confidence 468999999998887654 67789999999999999999999885
No 28
>2jss_B Uncharacterized protein YER030W; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae}
Probab=20.61 E-value=50 Score=23.16 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=12.0
Q ss_pred CCCCCCchhhHhhhhc
Q psy12660 276 DSDESGDEEEKEEEKM 291 (294)
Q Consensus 276 ~~~~~~~~~~~~~~~~ 291 (294)
+++|++.+|+|.++.|
T Consensus 3 ~d~es~~~d~~~e~~~ 18 (62)
T 2jss_B 3 EDSESDMDDAKLDALM 18 (62)
T ss_dssp SSCTTCCTTHHHHHTT
T ss_pred cccccccchhhhhhhc
Confidence 5677888888887765
Done!