Your job contains 1 sequence.
>psy12660
MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL
LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV
RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE
TFPTSRLNTSRVPNSVAIQDMVHMTTLVYNFYMDKVNGMKKEFYSKAKLNADKWKKPGDI
EEFYSKAKLNADKWKKPGDIEVKDVETHVAIHPGGDSDESGDEEEKEEEKMDTE
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12660
(294 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1276102 - symbol:Aqr "aquarius" species:10090 "Mu... 843 3.5e-83 1
UNIPROTKB|F1MUW2 - symbol:F1MUW2 "Uncharacterized protein... 833 4.0e-82 1
UNIPROTKB|F1PA16 - symbol:AQR "Uncharacterized protein" s... 833 4.2e-82 1
UNIPROTKB|O60306 - symbol:AQR "Intron-binding protein aqu... 831 6.9e-82 1
UNIPROTKB|F1NPB8 - symbol:AQR "Uncharacterized protein" s... 810 1.0e-79 1
RGD|1306223 - symbol:Aqr "aquarius homolog (mouse)" speci... 792 7.3e-78 1
ZFIN|ZDB-GENE-040426-1189 - symbol:aqr "aquarius homolog ... 789 2.5e-77 1
FB|FBgn0051368 - symbol:CG31368 species:7227 "Drosophila ... 782 1.3e-76 1
WB|WBGene00001258 - symbol:emb-4 species:6239 "Caenorhabd... 659 1.9e-63 1
TAIR|locus:2064158 - symbol:EMB2765 "EMBRYO DEFECTIVE 276... 627 5.3e-60 1
ASPGD|ASPL0000064563 - symbol:AN7014 species:162425 "Emer... 594 1.5e-56 1
DICTYBASE|DDB_G0274797 - symbol:aqr "intron-binding prote... 576 1.4e-54 1
UNIPROTKB|F1SRZ7 - symbol:F1SRZ7 "Uncharacterized protein... 558 7.4e-53 1
POMBASE|SPBC646.02 - symbol:cwf11 "complexed with Cdc5 pr... 305 9.2e-26 1
POMBASE|SPCC1739.03 - symbol:hrr1 "Helicase Required for ... 177 1.1e-10 1
MGI|MGI:2138982 - symbol:Znfx1 "zinc finger, NFX1-type co... 177 2.4e-10 1
UNIPROTKB|Q9P2E3 - symbol:ZNFX1 "NFX1-type zinc finger-co... 171 1.3e-09 1
TAIR|locus:2126480 - symbol:AT4G30100 species:3702 "Arabi... 163 7.2e-09 1
TAIR|locus:2059088 - symbol:AT2G19120 "AT2G19120" species... 155 4.8e-08 1
DICTYBASE|DDB_G0288923 - symbol:upf1 "regulator of nonsen... 153 1.0e-07 1
UNIPROTKB|F1PCI1 - symbol:C4orf21 "Uncharacterized protei... 147 3.7e-07 1
RGD|2322000 - symbol:LOC100363957 "hypothetical protein L... 146 4.3e-07 1
WB|WBGene00004880 - symbol:smg-2 species:6239 "Caenorhabd... 145 6.7e-07 1
SGD|S000004685 - symbol:NAM7 "ATP-dependent RNA helicase ... 144 7.6e-07 1
UNIPROTKB|E1BG37 - symbol:E1BG37 "Uncharacterized protein... 143 9.5e-07 1
WB|WBGene00014208 - symbol:ZK1067.2 species:6239 "Caenorh... 144 2.2e-06 1
CGD|CAL0003666 - symbol:NAM7 species:5476 "Candida albica... 140 2.3e-06 1
UNIPROTKB|Q5A507 - symbol:NAM7 "Putative uncharacterized ... 140 2.3e-06 1
SGD|S000001500 - symbol:HCS1 "Hexameric DNA polymerase al... 137 3.0e-06 1
TAIR|locus:2171007 - symbol:LBA1 "LOW-LEVEL BETA-AMYLASE ... 136 8.4e-06 1
UNIPROTKB|Q6ZU11 - symbol:Q6ZU11 "Uncharacterized protein... 133 1.3e-05 1
CGD|CAL0003335 - symbol:SEN1 species:5476 "Candida albica... 136 1.4e-05 1
UNIPROTKB|G4MK85 - symbol:MGG_02491 "DNA replication ATP-... 135 1.5e-05 1
POMBASE|SPAC16C9.06c - symbol:upf1 "ATP-dependent RNA hel... 131 2.1e-05 1
UNIPROTKB|E1BQD2 - symbol:C4H4orf21 "Uncharacterized prot... 130 2.7e-05 1
RGD|1589127 - symbol:LOC684558 "similar to regulator of n... 125 3.0e-05 1
UNIPROTKB|G5EA02 - symbol:C4orf21 "Uncharacterized protei... 133 3.3e-05 1
ASPGD|ASPL0000056713 - symbol:AN0646 species:162425 "Emer... 129 4.4e-05 1
POMBASE|SPBC29A10.10c - symbol:SPBC29A10.10c "tRNA-splici... 131 4.8e-05 2
WB|WBGene00016566 - symbol:eri-7 species:6239 "Caenorhabd... 124 7.9e-05 1
POMBASE|SPAC6G9.10c - symbol:sen1 "ATP-dependent 5' to 3'... 128 9.4e-05 1
ZFIN|ZDB-GENE-040426-2836 - symbol:upf1 "upf1 regulator o... 125 0.00012 1
MGI|MGI:107995 - symbol:Upf1 "UPF1 regulator of nonsense ... 125 0.00013 1
UNIPROTKB|E1BEK9 - symbol:UPF1 "Uncharacterized protein" ... 125 0.00013 1
UNIPROTKB|Q92900 - symbol:UPF1 "Regulator of nonsense tra... 125 0.00013 1
UNIPROTKB|E2RL81 - symbol:UPF1 "Uncharacterized protein" ... 125 0.00013 1
UNIPROTKB|H0Y455 - symbol:DNA2 "DNA replication ATP-depen... 119 0.00013 1
SGD|S000000978 - symbol:ECM32 "DNA dependent ATPase/DNA h... 110 0.00016 2
CGD|CAL0001700 - symbol:orf19.702 species:5476 "Candida a... 118 0.00021 2
UNIPROTKB|G4ND47 - symbol:MGG_00976 "Regulator-nonsense t... 121 0.00035 1
UNIPROTKB|E1C0J4 - symbol:UPF1 "Uncharacterized protein" ... 125 0.00035 2
POMBASE|SPBC16D10.04c - symbol:dna2 "DNA replication endo... 122 0.00036 1
UNIPROTKB|E1C0J3 - symbol:UPF1 "Uncharacterized protein" ... 125 0.00036 2
ZFIN|ZDB-GENE-070402-1 - symbol:setx "senataxin" species:... 124 0.00038 1
UNIPROTKB|F8VR31 - symbol:DNA2 "DNA replication ATP-depen... 119 0.00040 1
MGI|MGI:2443732 - symbol:Dna2 "DNA replication helicase 2... 120 0.00044 1
UNIPROTKB|E1C4T7 - symbol:Gga.18015 "Uncharacterized prot... 123 0.00053 1
UNIPROTKB|P51530 - symbol:DNA2 "DNA replication ATP-depen... 119 0.00056 1
UNIPROTKB|J3KPX5 - symbol:DNA2 "DNA replication ATP-depen... 119 0.00061 1
RGD|1306791 - symbol:Dna2 "DNA replication helicase 2 hom... 118 0.00073 1
>MGI|MGI:1276102 [details] [associations]
symbol:Aqr "aquarius" species:10090 "Mus musculus"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 MGI:MGI:1276102 GO:GO:0000398
CTD:9716 eggNOG:COG1112 HOGENOM:HOG000170551 HOVERGEN:HBG080430
KO:K12874 OMA:RTKAVGH OrthoDB:EOG4ZPDTF GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 EMBL:AK122310 EMBL:AK145547 EMBL:AK151716
EMBL:BC042479 EMBL:U90333 IPI:IPI00330263 RefSeq:NP_033832.2
UniGene:Mm.2545 ProteinModelPortal:Q8CFQ3 SMR:Q8CFQ3
PhosphoSite:Q8CFQ3 PaxDb:Q8CFQ3 PRIDE:Q8CFQ3
Ensembl:ENSMUST00000043160 GeneID:11834 KEGG:mmu:11834
GeneTree:ENSGT00700000104467 InParanoid:Q8CFQ3 NextBio:279759
Bgee:Q8CFQ3 CleanEx:MM_AQR Genevestigator:Q8CFQ3
GermOnline:ENSMUSG00000040383 Uniprot:Q8CFQ3
Length = 1481
Score = 843 (301.8 bits), Expect = 3.5e-83, P = 3.5e-83
Identities = 161/214 (75%), Positives = 181/214 (84%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E+ ANAGL+YDFQLINVEDF GVGESEPNPYFYQNL EAEY VALFMYM L
Sbjct: 1161 LPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL 1220
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQKHLIRD+IN RC +NPLIGRP+KVTTVD++QGQQNDYILLSLV
Sbjct: 1221 LGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1280
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
RT +VGHLRDVRRL+VAMSRARLGLY+FARVSLF+NCFELTPAF+QL RP LHI+P E
Sbjct: 1281 RTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTE 1340
Query: 181 TFPTSRLNTSRVPNSV-AIQDMVHMTTLVYNFYM 213
FPTSR N R P+ V I++M M VYN YM
Sbjct: 1341 PFPTSRKNGERPPHEVQVIKNMPQMANFVYNMYM 1374
>UNIPROTKB|F1MUW2 [details] [associations]
symbol:F1MUW2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0000398 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 EMBL:DAAA02028420 EMBL:DAAA02028416
EMBL:DAAA02028417 EMBL:DAAA02028418 EMBL:DAAA02028419
IPI:IPI00852511 Ensembl:ENSBTAT00000016895 Uniprot:F1MUW2
Length = 1466
Score = 833 (298.3 bits), Expect = 4.0e-82, P = 4.0e-82
Identities = 160/214 (74%), Positives = 179/214 (83%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E+ ANAGL+YDFQLINVEDF GVGESEPNPYFYQNL EAEY VALFMYM L
Sbjct: 1139 LPHVQLLLEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL 1198
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQKHLIRD+IN RC NPLIGRP+KVTTVD++QGQQNDYILLSLV
Sbjct: 1199 LGYPADKISILTTYNGQKHLIRDIINRRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1258
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
RT +VGHLRDVRRL+VAMSRARLGLY+FARVSLF+NCFELTPAF+QL RP LHI+P E
Sbjct: 1259 RTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTE 1318
Query: 181 TFPTSRLNTSRVPNSVAI-QDMVHMTTLVYNFYM 213
FPTSR N R + V I ++M M VYN YM
Sbjct: 1319 PFPTSRKNGERPSHEVQIIKNMPQMANFVYNMYM 1352
>UNIPROTKB|F1PA16 [details] [associations]
symbol:AQR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901
GO:GO:0000398 OMA:RTKAVGH GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467
EMBL:AAEX03016041 Ensembl:ENSCAFT00000013319 Uniprot:F1PA16
Length = 1483
Score = 833 (298.3 bits), Expect = 4.2e-82, P = 4.2e-82
Identities = 160/214 (74%), Positives = 179/214 (83%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E+ ANAGL+YDFQLINVEDF GVGESEPNPYFYQNL EAEY VALFMYM L
Sbjct: 1156 LPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL 1215
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQKHLIRD+IN RC NPLIGRP+KVTTVD++QGQQNDYILLSLV
Sbjct: 1216 LGYPADKISILTTYNGQKHLIRDIINRRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1275
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
RT +VGHLRDVRRL+VAMSRARLGLY+FARVSLF+NCFELTPAF+QL RP LHI+P E
Sbjct: 1276 RTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTE 1335
Query: 181 TFPTSRLNTSRVPNSVAI-QDMVHMTTLVYNFYM 213
FPTSR N R + V I ++M M VYN YM
Sbjct: 1336 PFPTSRKNGERPSHEVQIIKNMPQMANFVYNMYM 1369
>UNIPROTKB|O60306 [details] [associations]
symbol:AQR "Intron-binding protein aquarius" species:9606
"Homo sapiens" [GO:0097157 "pre-mRNA intronic binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] InterPro:IPR024860 InterPro:IPR026300
PIRSF:PIRSF038901 GO:GO:0000398 EMBL:AB011132 EMBL:EF553519
EMBL:BC036913 EMBL:BC070379 EMBL:BC108262 EMBL:BC127111
EMBL:BC127112 IPI:IPI00796835 PIR:T00333 RefSeq:NP_055506.1
UniGene:Hs.510958 ProteinModelPortal:O60306 SMR:O60306
IntAct:O60306 STRING:O60306 PhosphoSite:O60306 PaxDb:O60306
PRIDE:O60306 Ensembl:ENST00000156471 GeneID:9716 KEGG:hsa:9716
UCSC:uc001ziv.3 CTD:9716 GeneCards:GC15M035147 HGNC:HGNC:29513
MIM:610548 neXtProt:NX_O60306 PharmGKB:PA134869224 eggNOG:COG1112
HOGENOM:HOG000170551 HOVERGEN:HBG080430 InParanoid:O60306 KO:K12874
OMA:RTKAVGH OrthoDB:EOG4ZPDTF ChiTaRS:AQR GenomeRNAi:9716
NextBio:36525 Bgee:O60306 CleanEx:HS_AQR Genevestigator:O60306
GermOnline:ENSG00000021776 GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 Uniprot:O60306
Length = 1485
Score = 831 (297.6 bits), Expect = 6.9e-82, P = 6.9e-82
Identities = 159/214 (74%), Positives = 180/214 (84%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E+ ANAGL+YDFQLINVEDF GVGESEPNPYFYQNL EAEY VALFMYM L
Sbjct: 1157 LPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL 1216
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQKHLIRD+IN RC +NPLIGRP+KVTTVD++QGQQNDYILLSLV
Sbjct: 1217 LGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1276
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
RT +VGHLRDVRRL+VAMSRARLGLY+FARVSLF+NCFELTPAF+QL RP LHI+P E
Sbjct: 1277 RTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTE 1336
Query: 181 TFPTSRLNTSRVPNSVAI-QDMVHMTTLVYNFYM 213
FPT+R N R + V I ++M M VYN YM
Sbjct: 1337 PFPTTRKNGERPSHEVQIIKNMPQMANFVYNMYM 1370
>UNIPROTKB|F1NPB8 [details] [associations]
symbol:AQR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0000398 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 EMBL:AADN02003289 EMBL:AADN02003288
IPI:IPI00597734 Ensembl:ENSGALT00000015995 Uniprot:F1NPB8
Length = 1416
Score = 810 (290.2 bits), Expect = 1.0e-79, P = 1.0e-79
Identities = 155/222 (69%), Positives = 181/222 (81%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E++ ANAG +YDFQLINVEDFNGVGESEPNPYFYQNL EAEY VA+FMYM L
Sbjct: 1166 LPHVQLMPEFRTANAGFLYDFQLINVEDFNGVGESEPNPYFYQNLGEAEYVVAVFMYMCL 1225
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA +I+IL+TYNGQKHLIRDVIN RC +NPLIGRP+KVTTVD++QGQQNDYILLSLV
Sbjct: 1226 LGYPADRISILTTYNGQKHLIRDVINQRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1285
Query: 121 RTASVGHLR-DVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPH 179
RT +VGHLR DVRRL+VAMSRARLGLY+FARVSLF+NCFELTPAF+QL RP LHI+P
Sbjct: 1286 RTKAVGHLRRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPT 1345
Query: 180 ETFPTSRLNTSRVPNSV-AIQDMVHMTTLVYNFYMDKVNGMK 220
E FP +R N + + I++M M VYN YM + +
Sbjct: 1346 ECFPAARQNGEPPAHQIHVIKNMPQMANFVYNMYMHMIQSTR 1387
>RGD|1306223 [details] [associations]
symbol:Aqr "aquarius homolog (mouse)" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901 RGD:1306223
GO:GO:0005681 GO:GO:0000398 GO:GO:0097157 PANTHER:PTHR10887:SF5
IPI:IPI00389267 ProteinModelPortal:D3ZZP0
Ensembl:ENSRNOT00000011917 UCSC:RGD:1306223 ArrayExpress:D3ZZP0
Uniprot:D3ZZP0
Length = 1353
Score = 792 (283.9 bits), Expect = 7.3e-78, P = 7.3e-78
Identities = 149/186 (80%), Positives = 166/186 (89%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E+ ANAGL+YDFQLINVEDF GVGESEPNPYFYQNL EAEY VALFMYM L
Sbjct: 1157 LPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL 1216
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQKHLIRD+IN RC +NPLIGRP+KVTTVD++QGQQNDYILLSLV
Sbjct: 1217 LGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1276
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
RT +VGHLRDVRRL+VAMSRARLGLY+FARVSLF+NCFELTPAF+QL RP LHI+P E
Sbjct: 1277 RTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTE 1336
Query: 181 TFPTSR 186
FPTSR
Sbjct: 1337 PFPTSR 1342
>ZFIN|ZDB-GENE-040426-1189 [details] [associations]
symbol:aqr "aquarius homolog (mouse)" species:7955
"Danio rerio" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 ZFIN:ZDB-GENE-040426-1189
GO:GO:0005681 GO:GO:0000398 CTD:9716 HOGENOM:HOG000170551
HOVERGEN:HBG080430 KO:K12874 GO:GO:0097157 PANTHER:PTHR10887:SF5
EMBL:BC160661 IPI:IPI00861759 RefSeq:NP_956758.2 UniGene:Dr.17308
ProteinModelPortal:B1H1M2 DNASU:393436 GeneID:393436
KEGG:dre:393436 eggNOG:NOG272077 NextBio:20814473
ArrayExpress:B1H1M2 Uniprot:B1H1M2
Length = 1525
Score = 789 (282.8 bits), Expect = 2.5e-77, P = 2.5e-77
Identities = 149/213 (69%), Positives = 177/213 (83%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E++ N G +DFQLINVEDFNGVGESEPNPYFYQNLAEAEY VAL+MYMRL
Sbjct: 1156 LPHVQLQPEFRTPNPGFTFDFQLINVEDFNGVGESEPNPYFYQNLAEAEYSVALYMYMRL 1215
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA +I+IL+TYNGQKHLIRDVI+ RCA N G+P KVTTVD++QGQQNDYI+LSLV
Sbjct: 1216 LGYPAERISILTTYNGQKHLIRDVIHQRCASNSFFGQPSKVTTVDRFQGQQNDYIILSLV 1275
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
RT +VGHLRDVRRL+VAMSRARLGLY+FARVSLF+NC+ELTPAF+QL RP LHI PHE
Sbjct: 1276 RTKAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCYELTPAFSQLTARPLHLHIRPHE 1335
Query: 181 TFPTSRLNTSRVPNSVAIQDMVHMTTLVYNFYM 213
+ ++ +S+ P+ V ++DM M LVYN YM
Sbjct: 1336 YYTSTEARSSQ-PDQV-VKDMPEMANLVYNMYM 1366
>FB|FBgn0051368 [details] [associations]
symbol:CG31368 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IC]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 EMBL:AE014297 GO:GO:0016787
GO:GO:0071011 GO:GO:0000398 eggNOG:COG1112 KO:K12874 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 RefSeq:NP_996198.2 UniGene:Dm.10009
ProteinModelPortal:Q7KSN8 SMR:Q7KSN8 PaxDb:Q7KSN8
EnsemblMetazoa:FBtr0301042 GeneID:41437 KEGG:dme:Dmel_CG31368
UCSC:CG31368-RB FlyBase:FBgn0051368 InParanoid:Q7KSN8
OrthoDB:EOG43XSJ9 PhylomeDB:Q7KSN8 GenomeRNAi:41437 NextBio:823855
ArrayExpress:Q7KSN8 Bgee:Q7KSN8 Uniprot:Q7KSN8
Length = 1486
Score = 782 (280.3 bits), Expect = 1.3e-76, P = 1.3e-76
Identities = 152/233 (65%), Positives = 181/233 (77%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ H+ EY++AN G V+D+QLINVEDF GVGESEPNPYFYQNLAEAEY VA++MYMRL
Sbjct: 1173 LQHIFERDEYKQANPGFVHDYQLINVEDFKGVGESEPNPYFYQNLAEAEYIVAVYMYMRL 1232
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQKHLIRDVIN RC +NPLIG PHK+TTVDKYQGQQNDYIL+SLV
Sbjct: 1233 LGYPAAKISILTTYNGQKHLIRDVINARCGNNPLIGWPHKITTVDKYQGQQNDYILISLV 1292
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
RT +VGHLRDVRRL+VAMSRARLGLYVF RVSLF+NC EL F L RP +L +VP +
Sbjct: 1293 RTKAVGHLRDVRRLVVAMSRARLGLYVFGRVSLFKNCLELQQTFKLLTQRPLKLSLVPED 1352
Query: 181 TFPTSRLNTSRVPNS--VAIQDMVHMTTLVYNFYMDKVNGMKKEFYSKAKLNA 231
FPT RL ++ V + +++M M VY YM K+ +K S+ +L A
Sbjct: 1353 KFPTDRLASAAVASQDIKTVENMSEMAQFVYERYMAKMEELKGTLPSEEELEA 1405
>WB|WBGene00001258 [details] [associations]
symbol:emb-4 species:6239 "Caenorhabditis elegans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0097157
"pre-mRNA intronic binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] InterPro:IPR024860 InterPro:IPR026300
PIRSF:PIRSF038901 GO:GO:0009792 GO:GO:0040010 GO:GO:0010171
GO:GO:0040011 GO:GO:0005681 GO:GO:0000398 eggNOG:COG1112
HOGENOM:HOG000170551 KO:K12874 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467 EMBL:AL132853
GeneID:180232 KEGG:cel:CELE_Y80D3A.2 CTD:180232
RefSeq:NP_001256831.1 ProteinModelPortal:Q9U1Q7 SMR:Q9U1Q7
PaxDb:Q9U1Q7 PRIDE:Q9U1Q7 EnsemblMetazoa:Y80D3A.2a.1
EnsemblMetazoa:Y80D3A.2a.2 UCSC:Y80D3A.2.1 WormBase:Y80D3A.2a
InParanoid:Q9U1Q7 NextBio:908508 ArrayExpress:Q9U1Q7 Uniprot:Q9U1Q7
Length = 1467
Score = 659 (237.0 bits), Expect = 1.9e-63, P = 1.9e-63
Identities = 136/279 (48%), Positives = 183/279 (65%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV ++Q ANAG + FQ I++ DFNG GE++P+P+FYQNL EAEY AL+ YMR+
Sbjct: 1159 LPHVDGLPQFQNANAGFAFPFQFIDIPDFNGHGETQPSPHFYQNLGEAEYACALYTYMRI 1218
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQ LIRDV RC NPLIG P KV+TVDKYQGQQND+I+LSLV
Sbjct: 1219 LGYPAEKISILTTYNGQAQLIRDVFQRRCDTNPLIGMPAKVSTVDKYQGQQNDFIILSLV 1278
Query: 121 RTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE 180
+T ++GH+RDVRRL+VA+SRARLGLYV R +F +C ELTPA P++L I+P E
Sbjct: 1279 KTRNIGHIRDVRRLVVALSRARLGLYVLGRSKVFMDCLELTPAMRIFAKYPRKLVILPFE 1338
Query: 181 TFPTSRLNTSRVPNS--VAIQDMVHMTTLVYNFYMDKVNGMKKEF------YSKAK--LN 230
PT R R + + IQD +HMT V+ FYM + M+ + Y +++ LN
Sbjct: 1339 AHPTIRKWNERSKDGEPMEIQDTLHMTHFVHEFYMSNLPAMRDAYEQAMNEYMESQRLLN 1398
Query: 231 ADKWKKPGDIEEFYSKAKLNADKWKKPGDIE-VKDVETH 268
+ D+E + K A + KK +++ K+ + H
Sbjct: 1399 PPIDETQMDVETEHEKKHREAMERKKKQEMDDKKEADIH 1437
>TAIR|locus:2064158 [details] [associations]
symbol:EMB2765 "EMBRYO DEFECTIVE 2765" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901
GO:GO:0005886 GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005681 GO:GO:0000398 eggNOG:COG1112 HOGENOM:HOG000170551
KO:K12874 OMA:RTKAVGH GO:GO:0097157 PANTHER:PTHR10887:SF5
EMBL:AY099864 IPI:IPI00544394 RefSeq:NP_850297.1 UniGene:At.23967
ProteinModelPortal:Q8L5Y4 SMR:Q8L5Y4 STRING:Q8L5Y4 PaxDb:Q8L5Y4
PRIDE:Q8L5Y4 EnsemblPlants:AT2G38770.1 GeneID:818459
KEGG:ath:AT2G38770 TAIR:At2g38770 InParanoid:Q8L5Y4
PhylomeDB:Q8L5Y4 ProtClustDB:CLSN2680117 Genevestigator:Q8L5Y4
Uniprot:Q8L5Y4
Length = 1509
Score = 627 (225.8 bits), Expect = 5.3e-60, P = 5.3e-60
Identities = 125/200 (62%), Positives = 152/200 (76%)
Query: 10 YQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKIT 69
+Q+ANAG Y++QL+NV D+ G GES P+P+FYQN EAEY V++++YMRLLGYPA+KI+
Sbjct: 1227 FQRANAGFSYEYQLVNVPDYEGRGESTPSPWFYQNQGEAEYIVSVYIYMRLLGYPANKIS 1286
Query: 70 ILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASVGHLR 129
IL+TYNGQK LIRDVIN RC P IG P KVTTVDK+QGQQND+ILLSLVRT VGHLR
Sbjct: 1287 ILTTYNGQKLLIRDVINRRCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGHLR 1346
Query: 130 DVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHE-TFPTSRLN 188
DVRRL+VAMSRARLGLYVF R SLF C+EL P F L+ RP +L + +E T T R+
Sbjct: 1347 DVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFQLLLQRPDRLGLNFNENTAYTDRV- 1405
Query: 189 TSRVPNSVAIQDMVHMTTLV 208
V NS + D+ M +V
Sbjct: 1406 VEEVENSYLVHDVEEMAHIV 1425
>ASPGD|ASPL0000064563 [details] [associations]
symbol:AN7014 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0097157
"pre-mRNA intronic binding" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0005681 EMBL:BN001304
GO:GO:0004386 GO:GO:0000398 HOGENOM:HOG000170551 GO:GO:0097157
PANTHER:PTHR10887:SF5 ProteinModelPortal:C8VC84
EnsemblFungi:CADANIAT00000462 OMA:TIYENEM Uniprot:C8VC84
Length = 1422
Score = 594 (214.2 bits), Expect = 1.5e-56, P = 1.5e-56
Identities = 113/214 (52%), Positives = 151/214 (70%)
Query: 9 EYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKI 68
E+++ANAG +++Q INV D+ G GE EP P+F QNL EAEY VA+F YMRLLGYPA KI
Sbjct: 1169 EFKQANAGFQFEYQFINVPDYQGTGEREPTPHFVQNLGEAEYAVAIFQYMRLLGYPASKI 1228
Query: 69 TILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASVGHL 128
+IL+TY GQ LI+DV+N RC+ N L G P VTTVD+YQG+QNDYI+LSL RT +VG+L
Sbjct: 1229 SILATYAGQTALIKDVLNHRCSKNTLFGMPKIVTTVDRYQGEQNDYIILSLTRTRTVGYL 1288
Query: 129 RDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHETFPTSRLN 188
RDVRRL VA+SRARLGLY+ R +F +C+EL PAF+ L+ RP +L + P E +P +R
Sbjct: 1289 RDVRRLTVALSRARLGLYILGRREVFESCYELKPAFDLLLQRPDKLMLAPGEMYPATRTL 1348
Query: 189 TSRVPNSVAIQDMVHMTTLVYNFYMDKVNGMKKE 222
V + ++ + H+ V+ K+ + E
Sbjct: 1349 DDEVKGT-PMEGVEHLGQYVFEMTQAKIKALGGE 1381
>DICTYBASE|DDB_G0274797 [details] [associations]
symbol:aqr "intron-binding protein aquarius homolog"
species:44689 "Dictyostelium discoideum" [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR024860 dictyBase:DDB_G0274797
GenomeReviews:CM000151_GR GO:GO:0005681 EMBL:AAFI02000012
GO:GO:0000398 eggNOG:COG1112 KO:K12874 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 RefSeq:XP_643918.1 ProteinModelPortal:Q555Z2
PRIDE:Q555Z2 EnsemblProtists:DDB0233439 GeneID:8619345
KEGG:ddi:DDB_G0274797 InParanoid:Q555Z2 ProtClustDB:CLSZ2431000
Uniprot:Q555Z2
Length = 1487
Score = 576 (207.8 bits), Expect = 1.4e-54, P = 1.4e-54
Identities = 114/212 (53%), Positives = 152/212 (71%)
Query: 9 EYQKANAGLVYDFQLINVEDFNG--VGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAH 66
+++ AN GL YD+QLINV++ +G VGESEP PYFYQNL EAEY VA+F Y+ +GYP+
Sbjct: 1272 QFKLANPGLAYDYQLINVDESDGYGVGESEPTPYFYQNLGEAEYIVAMFQYLIAIGYPSE 1331
Query: 67 KITILSTYNGQKHLIRDVINTRCA-DNPL---IGRPHKVTTVDKYQGQQNDYILLSLVRT 122
KIT+L+TYNGQK+L+RDV +C +P G P K+TT+DKYQGQQND ILLSLVRT
Sbjct: 1332 KITVLTTYNGQKNLLRDVFKAKCTPQDPKKTQYGLPLKITTIDKYQGQQNDIILLSLVRT 1391
Query: 123 ASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHETF 182
GH+RDVRRLIVAMSRARLGLY+F + F+NC+E + F++L+ RP +L I+ E +
Sbjct: 1392 KQYGHIRDVRRLIVAMSRARLGLYIFCKKQFFQNCYETSMVFSKLLKRPDKLIIIKSEQY 1451
Query: 183 PTSRLNTSRVPNSV------AIQDMVHMTTLV 208
P + N ++ + + IQ+ HM +LV
Sbjct: 1452 PITSENARQINSKLDENDCFEIQNSFHMKSLV 1483
>UNIPROTKB|F1SRZ7 [details] [associations]
symbol:F1SRZ7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR024860
GO:GO:0005681 GO:GO:0000398 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467 EMBL:CU633172
Ensembl:ENSSSCT00000005301 Uniprot:F1SRZ7
Length = 1206
Score = 558 (201.5 bits), Expect = 7.4e-53, P = 7.4e-53
Identities = 105/133 (78%), Positives = 117/133 (87%)
Query: 1 MSHVGVYAEYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRL 60
+ HV + E+ ANAGL+YDFQLINVEDF GVGESEPNPYFYQNL EAEY VALFMYM L
Sbjct: 1074 LPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL 1133
Query: 61 LGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLV 120
LGYPA KI+IL+TYNGQKHLIRD+IN RC NPLIGRP+KVTTVD++QGQQNDYILLSLV
Sbjct: 1134 LGYPADKISILTTYNGQKHLIRDIINRRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1193
Query: 121 RTASVGHLRDVRR 133
RT +VGHLR VR+
Sbjct: 1194 RTRAVGHLRYVRK 1206
>POMBASE|SPBC646.02 [details] [associations]
symbol:cwf11 "complexed with Cdc5 protein Cwf11"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IC] InterPro:IPR026300 PIRSF:PIRSF038901
PomBase:SPBC646.02 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005681 KO:K12874 GO:GO:0045292 PIR:T40578 RefSeq:NP_595360.1
ProteinModelPortal:O94508 IntAct:O94508 EnsemblFungi:SPBC646.02.1
GeneID:2541124 KEGG:spo:SPBC646.02 eggNOG:NOG128983 OMA:IATICND
OrthoDB:EOG4TMV95 NextBio:20802237 Uniprot:O94508
Length = 1284
Score = 305 (112.4 bits), Expect = 9.2e-26, P = 9.2e-26
Identities = 67/205 (32%), Positives = 109/205 (53%)
Query: 14 NAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILST 73
N+G ++ Q INV F G E+EP + QNL EAEY VALF YMR+LGYP ++I I +
Sbjct: 1079 NSGFAHEVQFINVGAFKGSQETEPVSGYKQNLGEAEYAVALFQYMRMLGYPTNEIVICTL 1138
Query: 74 YNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQN-DYILLSLVRTASVGHLRDVR 132
Y Q L+ ++I+ RC+ N G+P V TV+K + ++++ + V + + +
Sbjct: 1139 YESQVSLLNEIISVRCSHNSFFGQPAFVGTVEKLPSDKRVNFVIFTTVESKEASDHWNPK 1198
Query: 133 RLIVAMSRARLGLYVFARVSLFRNCFELTPAFNQLMIRPQQLHIVPHETFPTSRLNTSRV 192
A S GLYV LFR+ L +N++ P +L + E +P+S S V
Sbjct: 1199 TFYKAFSACSYGLYVLCNRDLFRSTRGLEKLWNEIEKTPDKLLLTTGEIYPSSHKIGSSV 1258
Query: 193 PNSVAIQDMVHMTTLVYNFYMDKVN 217
+ I++++H++ V ++N
Sbjct: 1259 -ETFEIENLLHLSNYVVEMTKKRLN 1282
>POMBASE|SPCC1739.03 [details] [associations]
symbol:hrr1 "Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0031379
"RNA-directed RNA polymerase complex" evidence=IDA] [GO:0031380
"nuclear RNA-directed RNA polymerase complex" evidence=IDA]
PomBase:SPCC1739.03 GO:GO:0005829 GO:GO:0005524 GO:GO:0007059
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003723 GO:GO:0006338
GO:GO:0007049 GO:GO:0030702 GO:GO:0004386 GO:GO:0031048
eggNOG:COG1112 GO:GO:0016585 GO:GO:0031380 PIR:T41111
RefSeq:NP_588411.2 DIP:DIP-29303N STRING:O74465
EnsemblFungi:SPCC1739.03.1 GeneID:2539248 OrthoDB:EOG4DRDMD
NextBio:20800418 Uniprot:O74465
Length = 999
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 53/131 (40%), Positives = 65/131 (49%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPH--KV 101
NL EA+ V +Y+ G KIT L+ Y QK LI R L H KV
Sbjct: 835 NLFEAQMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIE-----RLLSESLNREKHFIKV 889
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCF 158
TVD YQG++ND +LLSLVR VG L R+ V++SRAR GL++F L
Sbjct: 890 ATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESN 949
Query: 159 ELT-PAFNQLM 168
L A N LM
Sbjct: 950 PLWWDAINTLM 960
>MGI|MGI:2138982 [details] [associations]
symbol:Znfx1 "zinc finger, NFX1-type containing 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] MGI:MGI:2138982 GO:GO:0046872
EMBL:CH466551 eggNOG:COG1112 GeneTree:ENSGT00700000104467
EMBL:AL591711 CTD:57169 HOVERGEN:HBG052201 OMA:CVRLCSE
EMBL:AK149249 EMBL:AK150223 EMBL:AK157301 EMBL:BC025488
IPI:IPI00660406 RefSeq:NP_001028368.2 UniGene:Mm.297074
ProteinModelPortal:Q8R151 STRING:Q8R151 PhosphoSite:Q8R151
PaxDb:Q8R151 PRIDE:Q8R151 Ensembl:ENSMUST00000048988 GeneID:98999
KEGG:mmu:98999 HOGENOM:HOG000231023 InParanoid:A2A5R3
NextBio:353739 Bgee:Q8R151 CleanEx:MM_ZNFX1 Genevestigator:Q8R151
GermOnline:ENSMUSG00000039501 Uniprot:Q8R151
Length = 1909
Score = 177 (67.4 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 46/115 (40%), Positives = 65/115 (56%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+QN EA + V L Y+ Y +ITIL+TY GQ +R ++ + G KV
Sbjct: 1121 HQNQHEAHFVVELCQYLLCQEYLPSQITILTTYTGQLFCLRKLMPVKT----FAGI--KV 1174
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSL 153
VDKYQG++ND ILLSLVR+ VG L+ R+ VA+SRA+ G+Y + +
Sbjct: 1175 HVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQM 1229
>UNIPROTKB|Q9P2E3 [details] [associations]
symbol:ZNFX1 "NFX1-type zinc finger-containing protein 1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] Pathway_Interaction_DB:telomerasepathway
GO:GO:0046872 eggNOG:COG1112 EMBL:AL049766 EMBL:AB037825
EMBL:AK000573 EMBL:AK002139 EMBL:AK022641 EMBL:AK023836
IPI:IPI00165981 IPI:IPI00220462 RefSeq:NP_066363.1
UniGene:Hs.371794 ProteinModelPortal:Q9P2E3 SMR:Q9P2E3
IntAct:Q9P2E3 STRING:Q9P2E3 PhosphoSite:Q9P2E3 DMDM:23821814
PaxDb:Q9P2E3 PeptideAtlas:Q9P2E3 PRIDE:Q9P2E3
Ensembl:ENST00000371752 Ensembl:ENST00000396105 GeneID:57169
KEGG:hsa:57169 UCSC:uc002xui.3 CTD:57169 GeneCards:GC20M047854
HGNC:HGNC:29271 HPA:HPA046629 neXtProt:NX_Q9P2E3
PharmGKB:PA143485687 HOVERGEN:HBG052201 InParanoid:Q9P2E3
OMA:CVRLCSE PhylomeDB:Q9P2E3 ChiTaRS:ZNFX1 GenomeRNAi:57169
NextBio:63185 ArrayExpress:Q9P2E3 Bgee:Q9P2E3 CleanEx:HS_ZNFX1
Genevestigator:Q9P2E3 GermOnline:ENSG00000124201 Uniprot:Q9P2E3
Length = 1918
Score = 171 (65.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 45/115 (39%), Positives = 64/115 (55%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+QN EA + V L Y Y +ITIL+TY GQ +R ++ + G +V
Sbjct: 1128 HQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKT----FAGV--RV 1181
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSL 153
VDKYQG++ND ILLSLVR+ VG L+ R+ VA+SRA+ G+Y + +
Sbjct: 1182 HVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQM 1236
>TAIR|locus:2126480 [details] [associations]
symbol:AT4G30100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] GO:GO:0009506 EMBL:CP002687 EMBL:AL161576
GO:GO:0004519 eggNOG:COG1112 EMBL:AL078464 KO:K10706
InterPro:IPR026852 PANTHER:PTHR10887:SF27 HOGENOM:HOG000084788
ProtClustDB:CLSN2683158 IPI:IPI00535923 PIR:T08986
RefSeq:NP_194739.1 UniGene:At.31859 ProteinModelPortal:Q9SZW3
SMR:Q9SZW3 STRING:Q9SZW3 PaxDb:Q9SZW3 PRIDE:Q9SZW3
EnsemblPlants:AT4G30100.1 GeneID:829133 KEGG:ath:AT4G30100
TAIR:At4g30100 InParanoid:Q9SZW3 PhylomeDB:Q9SZW3
ArrayExpress:Q9SZW3 Genevestigator:Q9SZW3 Uniprot:Q9SZW3
Length = 1311
Score = 163 (62.4 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 54/237 (22%), Positives = 110/237 (46%)
Query: 42 YQNLAEAEYCVALFMYM----RLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGR 97
Y+N+ EA +CV +++++ + LG + +++ Y Q ++ + + L +
Sbjct: 1071 YENIDEARFCVGVYLHLQRTLKSLGGGKVSVGVITPYKLQLKCLKIEFGNALSQDEL--Q 1128
Query: 98 PHKVTTVDKYQGQQNDYILLSLVRTAS--VGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
+ TVD +QGQ+ D I++S VR ++ VG + D+RR+ VA++RA+ L+V S
Sbjct: 1129 EIYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRAKRALWVMGNASALM 1188
Query: 156 NCFELTPAFNQLMIRP--QQLHIVPHETFPTSRLNT--SRVPNSVAIQDMVHMTTLVYNF 211
C + R ++ +P + FP ++ + + PN+ + T + +
Sbjct: 1189 KCEDWAALITDAKARNCFMEMESLPKD-FPVPKVPSFIPKAPNARGFRSGGPRTRSI-DM 1246
Query: 212 YMDKVNGMKKEFYSKAKLNADKWKKPGDIEEFYSKAKLNADKWKKPGDIEVKDVETH 268
+ + +G E KL+ + + G+ S+ + + D PGD +D H
Sbjct: 1247 HPESRSGTPSE--DDKKLSTTTFPRNGN-----SRRENSVDDSDPPGD-RYRDAWQH 1295
>TAIR|locus:2059088 [details] [associations]
symbol:AT2G19120 "AT2G19120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] GO:GO:0009506
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0004386 GO:GO:0004519
eggNOG:COG1112 EMBL:AC002392 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI00542366 PIR:T00533
RefSeq:NP_179502.1 UniGene:At.52824 ProteinModelPortal:O64476
SMR:O64476 PaxDb:O64476 PRIDE:O64476 EnsemblPlants:AT2G19120.1
GeneID:816429 KEGG:ath:AT2G19120 TAIR:At2g19120
HOGENOM:HOG000084788 InParanoid:O64476 OMA:DWAALIS PhylomeDB:O64476
ProtClustDB:CLSN2683158 ArrayExpress:O64476 Genevestigator:O64476
Uniprot:O64476
Length = 1090
Score = 155 (59.6 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 37/117 (31%), Positives = 66/117 (56%)
Query: 42 YQNLAEAEYCVALFMYMR--LLGYPAHKITI--LSTYNGQKHLIRDVINTRCADNPLIGR 97
Y+N+ EA +CV ++M+++ L A K+++ ++ Y Q ++ + L +
Sbjct: 908 YENVDEARFCVGVYMHLQKTLKSLGAGKVSVGVITPYKLQLKCLKHEFGNALGQDEL--K 965
Query: 98 PHKVTTVDKYQGQQNDYILLSLVRTAS--VGHLRDVRRLIVAMSRARLGLYVFARVS 152
+ TVD +QGQ+ D I++S VR + VG + D+RR+ VA++RAR L+V S
Sbjct: 966 EIYINTVDAFQGQERDVIIMSCVRASGHGVGFVSDIRRMNVALTRARRALWVMGNAS 1022
>DICTYBASE|DDB_G0288923 [details] [associations]
symbol:upf1 "regulator of nonsense transcripts 1"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;IC] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 dictyBase:DDB_G0288923
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000126
GenomeReviews:CM000154_GR GO:GO:0003676 eggNOG:COG1112
GO:GO:0004004 KO:K14326 RefSeq:XP_636490.1
ProteinModelPortal:Q54I89 SMR:Q54I89 STRING:Q54I89
EnsemblProtists:DDB0233746 GeneID:8626873 KEGG:ddi:DDB_G0288923
InParanoid:Q54I89 Uniprot:Q54I89
Length = 1331
Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 45/145 (31%), Positives = 70/145 (48%)
Query: 29 FNGVGESE--PNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVIN 86
FN G E + + N EA C + LG +I I++ Y GQ+ I +
Sbjct: 818 FNCTGSEEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQ 877
Query: 87 TRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARL 143
N + + +V +VD +QG++ DYI+LS VR+ +G L+D RRL VA++RAR
Sbjct: 878 KSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARF 937
Query: 144 GLYVFARVSLFRNCFELTPAFNQLM 168
GL + + P +N L+
Sbjct: 938 GLIILGNAKVLSK----DPLWNSLI 958
>UNIPROTKB|F1PCI1 [details] [associations]
symbol:C4orf21 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AAEX03016829
Ensembl:ENSCAFT00000018553 Uniprot:F1PCI1
Length = 1024
Score = 147 (56.8 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 34/114 (29%), Positives = 62/114 (54%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+ N+AEA + + L + G I +++ Y Q + + +++ DNP I + +V
Sbjct: 853 FHNVAEAAFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFDNPDI-KAVQV 911
Query: 102 TTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
+TVD +QG + + I+LS VRT VG + +R+ VA++R R L + ++ R
Sbjct: 912 STVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGRRHLLIVGNLACLR 965
>RGD|2322000 [details] [associations]
symbol:LOC100363957 "hypothetical protein LOC100363957"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 RGD:2322000
GO:GO:0008270 GeneTree:ENSGT00550000074391 IPI:IPI00777941
Ensembl:ENSRNOT00000014695 Uniprot:F1M404
Length = 919
Score = 146 (56.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 34/114 (29%), Positives = 62/114 (54%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+ N+AEA + + L + G I +++ Y Q + I +++ D+P + + +V
Sbjct: 749 FVNVAEAAFTLKLIRSLIASGLEGSMIGVITLYKSQMYKICSLLSAVDVDHPDV-KAVEV 807
Query: 102 TTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
+TVD +QG + + I+LS VRT VG + +R+ VA++R R L + +S R
Sbjct: 808 STVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGRRHLLIIGSLSCLR 861
>WB|WBGene00004880 [details] [associations]
symbol:smg-2 species:6239 "Caenorhabditis elegans"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IGI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA;TAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030538
"embryonic genitalia morphogenesis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0051721 "protein phosphatase 2A
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
EMBL:AF074017 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016246 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0040035 eggNOG:COG1112
GO:GO:0004004 GO:GO:0030538 HOGENOM:HOG000205990 KO:K14326
EMBL:FO081800 PIR:T43280 RefSeq:NP_490829.1
ProteinModelPortal:O76512 SMR:O76512 MINT:MINT-255670 STRING:O76512
PaxDb:O76512 GeneID:171696 KEGG:cel:CELE_Y48G8AL.6 UCSC:Y48G8AL.6
CTD:171696 WormBase:Y48G8AL.6 InParanoid:O76512 NextBio:872341
Uniprot:O76512
Length = 1069
Score = 145 (56.1 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+ N EA L + G H+I ++++Y GQ+ I + ++T+ N + ++
Sbjct: 738 FLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEI 797
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGL 145
+VD +QG++ DYI+++ VR+ +G L D RRL VA++RA+ GL
Sbjct: 798 ASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGL 844
>SGD|S000004685 [details] [associations]
symbol:NAM7 "ATP-dependent RNA helicase of the SFI
superfamily" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IGI;IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016567 "protein ubiquitination"
evidence=IMP;IDA;IPI] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005844 "polysome" evidence=TAS] [GO:0003676 "nucleic acid
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;TAS]
[GO:0006449 "regulation of translational termination" evidence=TAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006452 "translational frameshifting" evidence=IMP] [GO:0008186
"RNA-dependent ATPase activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR018999 Pfam:PF09416 SMART:SM00382 SGD:S000004685
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003676 GO:GO:0016567
GO:GO:0030466 EMBL:BK006946 EMBL:Z49259 GO:GO:0005844 GO:GO:0008298
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0004004
GO:GO:0070478 GO:GO:0006449 GeneTree:ENSGT00550000074391
EMBL:X62394 EMBL:M76659 PIR:S23408 RefSeq:NP_013797.1 PDB:2XZL
PDBsum:2XZL ProteinModelPortal:P30771 SMR:P30771 DIP:DIP-2373N
IntAct:P30771 MINT:MINT-492322 STRING:P30771 PaxDb:P30771
PeptideAtlas:P30771 EnsemblFungi:YMR080C GeneID:855104
KEGG:sce:YMR080C CYGD:YMR080c HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL OrthoDB:EOG405W86 EvolutionaryTrace:P30771
NextBio:978431 Genevestigator:P30771 GermOnline:YMR080C
Uniprot:P30771
Length = 971
Score = 144 (55.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 43/131 (32%), Positives = 66/131 (50%)
Query: 31 GVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCA 90
G E N + N EA C + + G +I +++ Y GQ+ I + +
Sbjct: 689 GREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGS 748
Query: 91 -DNPLIGRPHKVTTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLY 146
D L + +V +VD +QG++ DYI+LS VR ++G LRD RRL V ++RA+ GL
Sbjct: 749 LDKDLYIKV-EVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLV 807
Query: 147 VFARV-SLFRN 156
+ SL RN
Sbjct: 808 ILGNPRSLARN 818
>UNIPROTKB|E1BG37 [details] [associations]
symbol:E1BG37 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 EMBL:DAAA02016483 IPI:IPI00912094
Ensembl:ENSBTAT00000017567 OMA:HKLGTNK Uniprot:E1BG37
Length = 933
Score = 143 (55.4 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 32/114 (28%), Positives = 62/114 (54%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
+ N+AEA + + L + G I +++ Y Q + + +++ D+P + + +V
Sbjct: 755 FHNVAEAAFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAMDFDHPNL-KAVQV 813
Query: 102 TTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
+TVD +QG + + I+LS VRT VG + +R+ VA++R R L + ++ R
Sbjct: 814 STVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGRRHLLIVGNLACLR 867
>WB|WBGene00014208 [details] [associations]
symbol:ZK1067.2 species:6239 "Caenorhabditis elegans"
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] GeneTree:ENSGT00700000104467
EMBL:Z70038 RefSeq:NP_001254204.1 EnsemblMetazoa:ZK1067.2b
GeneID:174463 KEGG:cel:CELE_ZK1067.2 CTD:174463 WormBase:ZK1067.2b
OMA:THIGVQI Uniprot:E9P860
Length = 2443
Score = 144 (55.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 14 NAGLVYDFQ--LINVEDFNGVG-ESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITI 70
N GL D Q N+ ++ E P+ + N E VAL ++ Y + I +
Sbjct: 1558 NVGLYPDVQGMATNLFFWSHTSMEESPDEVSWLNKHEISMTVALVKHLLKQNYTTNDIVV 1617
Query: 71 LSTYNGQKHLI-RDVINT--RCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRT----- 122
L+TY+ QK+L+ R+ N D+ +I P V TVD +QG++ +++SLVR+
Sbjct: 1618 LATYSAQKNLMYREYANVFGSTPDSNVI--P--VETVDSFQGKERKIVIVSLVRSHRGGR 1673
Query: 123 --ASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCFEL 160
+G L R+ VA++RA+ G+Y+ + N EL
Sbjct: 1674 ENTGIGFLAVANRICVALTRAQHGMYIIGNGAYIMNNSEL 1713
>CGD|CAL0003666 [details] [associations]
symbol:NAM7 species:5476 "Candida albicans" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
CGD:CAL0003666 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 eggNOG:COG1112
InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000063
EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1 RefSeq:XP_716838.1
ProteinModelPortal:Q5A507 SMR:Q5A507 STRING:Q5A507 GeneID:3641489
GeneID:3641540 KEGG:cal:CaO19.8554 KEGG:cal:CaO19.939
Uniprot:Q5A507
Length = 1019
Score = 140 (54.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 40/121 (33%), Positives = 67/121 (55%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQK-HLIRDV-INTRCADNPLIGRPH 99
Y N EA + + G +I +++ Y GQ+ +L++ + +N+ D
Sbjct: 733 YLNRVEAMNVEKIITKLFKDGIKPEQIGVITPYEGQRAYLVQFMSVNSTLLDKRDQYLNV 792
Query: 100 KVTTVDKYQGQQNDYILLSLVR---TASVGHLRDVRRLIVAMSRARLGLYVFARV-SLFR 155
++T+VD +QG++ D+I+LS VR + S+G L D RRL VA++RA+ GL + SL R
Sbjct: 793 EITSVDAFQGREKDFIILSCVRANDSQSIGFLSDPRRLNVALTRAKYGLVILGNPRSLCR 852
Query: 156 N 156
N
Sbjct: 853 N 853
>UNIPROTKB|Q5A507 [details] [associations]
symbol:NAM7 "Putative uncharacterized protein NAM7"
species:237561 "Candida albicans SC5314" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 CGD:CAL0003666 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
EMBL:AACQ01000063 EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1
RefSeq:XP_716838.1 ProteinModelPortal:Q5A507 SMR:Q5A507
STRING:Q5A507 GeneID:3641489 GeneID:3641540 KEGG:cal:CaO19.8554
KEGG:cal:CaO19.939 Uniprot:Q5A507
Length = 1019
Score = 140 (54.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 40/121 (33%), Positives = 67/121 (55%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQK-HLIRDV-INTRCADNPLIGRPH 99
Y N EA + + G +I +++ Y GQ+ +L++ + +N+ D
Sbjct: 733 YLNRVEAMNVEKIITKLFKDGIKPEQIGVITPYEGQRAYLVQFMSVNSTLLDKRDQYLNV 792
Query: 100 KVTTVDKYQGQQNDYILLSLVR---TASVGHLRDVRRLIVAMSRARLGLYVFARV-SLFR 155
++T+VD +QG++ D+I+LS VR + S+G L D RRL VA++RA+ GL + SL R
Sbjct: 793 EITSVDAFQGREKDFIILSCVRANDSQSIGFLSDPRRLNVALTRAKYGLVILGNPRSLCR 852
Query: 156 N 156
N
Sbjct: 853 N 853
>SGD|S000001500 [details] [associations]
symbol:HCS1 "Hexameric DNA polymerase alpha-associated DNA
helicase A" species:4932 "Saccharomyces cerevisiae" [GO:0003677
"DNA binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0033203 "DNA helicase A
complex" evidence=IDA] InterPro:IPR003593 InterPro:IPR004483
SMART:SM00382 SGD:S000001500 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 EMBL:BK006944 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:X74152 GO:GO:0006273 GO:GO:0043141
HOGENOM:HOG000185831 OrthoDB:EOG444PTN GO:GO:0033203 EMBL:Z28017
PIR:S34700 RefSeq:NP_012908.1 ProteinModelPortal:P34243 SMR:P34243
DIP:DIP-1383N IntAct:P34243 MINT:MINT-399891 STRING:P34243
PaxDb:P34243 EnsemblFungi:YKL017C GeneID:853852 KEGG:sce:YKL017C
CYGD:YKL017c GeneTree:ENSGT00700000104572 OMA:QGGDFPE
SABIO-RK:P34243 NextBio:975085 Genevestigator:P34243
GermOnline:YKL017C TIGRFAMs:TIGR00376 Uniprot:P34243
Length = 683
Score = 137 (53.3 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 58 MRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILL 117
+R P + I ++S YN Q ++ +I+ + +++TVD +QG++ D I+L
Sbjct: 559 LRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDI-----EISTVDGFQGREKDVIIL 613
Query: 118 SLVRTAS---VGHLRDVRRLIVAMSRARLGLYVFARVSLFRNC 157
SLVR+ VG L++ RRL VAM+R R L V + + + C
Sbjct: 614 SLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRC 656
>TAIR|locus:2171007 [details] [associations]
symbol:LBA1 "LOW-LEVEL BETA-AMYLASE 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=IGI]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA;RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0009755 "hormone-mediated
signaling pathway" evidence=RCA] [GO:0048825 "cotyledon
development" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0009744 "response to sucrose stimulus"
evidence=IGI] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005886 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016246 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0009744 GO:GO:0008270 GO:GO:0010182
GO:GO:0004386 GO:GO:0000932 eggNOG:COG1112 InterPro:IPR014001
PROSITE:PS51192 EMBL:AB013394 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL EMBL:AF484122 IPI:IPI00541997 RefSeq:NP_199512.2
UniGene:At.8584 ProteinModelPortal:Q9FJR0 SMR:Q9FJR0 STRING:Q9FJR0
PaxDb:Q9FJR0 PRIDE:Q9FJR0 EnsemblPlants:AT5G47010.1 GeneID:834747
KEGG:ath:AT5G47010 GeneFarm:2422 TAIR:At5g47010 InParanoid:Q9FJR0
PhylomeDB:Q9FJR0 ProtClustDB:CLSN2680462 Genevestigator:Q9FJR0
GermOnline:AT5G47010 Uniprot:Q9FJR0
Length = 1254
Score = 136 (52.9 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 43/150 (28%), Positives = 68/150 (45%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA L G +I +++ Y GQ+ I + + + + + +V
Sbjct: 784 YLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEV 843
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCF 158
+VD +QG++ DYI+LS VR+ +G L D RRL VA++RAR G+ + +
Sbjct: 844 ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK-- 901
Query: 159 ELTPAFNQLMIRPQQLHIVPHETFPTSRLN 188
P +N L+ H HE LN
Sbjct: 902 --QPLWNGLLT-----HYKEHECLVEGPLN 924
>UNIPROTKB|Q6ZU11 [details] [associations]
symbol:Q6ZU11 "Uncharacterized protein FLJ44066"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0016021 GO:GO:0008270
eggNOG:COG1112 UniGene:Hs.713663 EMBL:AK126054 EMBL:AL137700
IPI:IPI00300207 IPI:IPI00880006 PIR:T46441 RefSeq:NP_060862.3
UniGene:Hs.380346 ProteinModelPortal:Q6ZU11 SMR:Q6ZU11
PhosphoSite:Q6ZU11 DMDM:74711848 PaxDb:Q6ZU11 PRIDE:Q6ZU11
GeneID:55345 KEGG:hsa:55345 CTD:55345 HPA:HPA030706
neXtProt:NX_Q6ZU11 PharmGKB:PA144596502 HOGENOM:HOG000155510
InParanoid:Q6ZU11 PhylomeDB:Q6ZU11 GenomeRNAi:55345 NextBio:59679
ArrayExpress:Q6ZU11 Bgee:Q6ZU11 Genevestigator:Q6ZU11
Uniprot:Q6ZU11
Length = 926
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 34/125 (27%), Positives = 67/125 (53%)
Query: 31 GVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCA 90
G+ + E + F+ N+AEA + + L + G I +++ Y Q + + +++
Sbjct: 744 GLEQIERDNSFH-NVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDF 802
Query: 91 DNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVFAR 150
+P I + +V+TVD +QG + + I+LS VRT VG + +R+ VA++R + L +
Sbjct: 803 HHPDI-KTVQVSTVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGKRHLLIVGN 861
Query: 151 VSLFR 155
++ R
Sbjct: 862 LACLR 866
>CGD|CAL0003335 [details] [associations]
symbol:SEN1 species:5476 "Candida albicans" [GO:0035649 "Nrd1
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] [GO:0031126 "snoRNA
3'-end processing" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR014016 InterPro:IPR024714 PROSITE:PS51198
CGD:CAL0003335 GO:GO:0005524 GO:GO:0005634 GO:GO:0008033
GO:GO:0004386 eggNOG:COG1112 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_723003.1 RefSeq:XP_723150.1 ProteinModelPortal:Q5ANG6
STRING:Q5ANG6 GeneID:3635255 GeneID:3635333 KEGG:cal:CaO19.13359
KEGG:cal:CaO19.5938 Uniprot:Q5ANG6
Length = 2018
Score = 136 (52.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 48/137 (35%), Positives = 72/137 (52%)
Query: 29 FNGVGESEPNPYFYQNLAEAEYCVALFM---YMRLLGYP--AHKITILSTYNGQKHLIRD 83
F+ +G+ E N E VAL + M+LL + KI I+S Y Q I++
Sbjct: 1653 FDILGKHEKNELTRSLFNTDEAIVALQLTDKLMQLLPQDKFSGKIGIISPYKEQIRKIKE 1712
Query: 84 VINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVR---TASVGHLRDVRRLIVAMSR 140
V R P++ TVD +QGQ+ + I++S VR T +VG L DVRR+ VA++R
Sbjct: 1713 VF-VRKYGKPILDEID-FNTVDGFQGQEKEIIIMSCVRASATGNVGFLSDVRRMNVALTR 1770
Query: 141 ARLGLYVFA-RVSLFRN 156
A+ L++ + SL RN
Sbjct: 1771 AKTTLWILGNKDSLSRN 1787
>UNIPROTKB|G4MK85 [details] [associations]
symbol:MGG_02491 "DNA replication ATP-dependent helicase
dna2" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0004386 EMBL:CM001231 GO:GO:0017108 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742 InterPro:IPR022765
Pfam:PF01930 RefSeq:XP_003709288.1 ProteinModelPortal:G4MK85
EnsemblFungi:MGG_02491T0 GeneID:2681588 KEGG:mgr:MGG_02491
Uniprot:G4MK85
Length = 1689
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 42/131 (32%), Positives = 66/131 (50%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N EA+ V L + LG PA++I +++ Y Q L++ + R N ++ T
Sbjct: 1455 NPVEAQLVVQLVESLMTLGVPANEIGVMTHYRSQLALLKHKL-LR-GKNTGDATAVEMHT 1512
Query: 104 VDKYQGQQNDYILLSLVRTASVGH----LRDVRRLIVAMSRARLGLYVFARVSLFRNCF- 158
D++QG+ + ++LSLVR+ H LRD RR+ VA +RA+ L V R C
Sbjct: 1513 ADRFQGRDKEVVVLSLVRSNEACHIGDLLRDWRRINVAFTRAKTKLLVIGSRETLRGCGA 1572
Query: 159 -ELTPAFNQLM 168
E+ F +LM
Sbjct: 1573 DEMLSKFVRLM 1583
>POMBASE|SPAC16C9.06c [details] [associations]
symbol:upf1 "ATP-dependent RNA helicase Upf1"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0002184 "cytoplasmic translational
termination" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006415
"translational termination" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 PomBase:SPAC16C9.06c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0004004 GO:GO:0002184 HOGENOM:HOG000205990
KO:K14326 OMA:MFYEGSL OrthoDB:EOG405W86 PIR:S62476
RefSeq:NP_593080.1 ProteinModelPortal:Q09820 SMR:Q09820
STRING:Q09820 PRIDE:Q09820 EnsemblFungi:SPAC16C9.06c.1
GeneID:2542327 KEGG:spo:SPAC16C9.06c NextBio:20803388
Uniprot:Q09820
Length = 925
Score = 131 (51.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 35/111 (31%), Positives = 65/111 (58%)
Query: 42 YQNLAEAEYCVALFM-YMRLLGYPAHKITILSTYNGQK-HLIRDVINTRCADNPLIGRPH 99
+ N EA C + ++R P +I I++ Y+GQ+ ++++ + N L +
Sbjct: 692 FLNRTEASTCEKIVTTFLRSNVLP-EQIGIVTPYDGQRSYIVQYMQNNGSMQKDLY-KAV 749
Query: 100 KVTTVDKYQGQQNDYILLSLVRTAS---VGHLRDVRRLIVAMSRARLGLYV 147
+V +VD +QG++ D+I+LS VR++ +G + D RRL VA++RA+ G+ V
Sbjct: 750 EVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIV 800
>UNIPROTKB|E1BQD2 [details] [associations]
symbol:C4H4orf21 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AADN02009328
IPI:IPI00577016 Ensembl:ENSGALT00000019715 Uniprot:E1BQD2
Length = 913
Score = 130 (50.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 33/129 (25%), Positives = 70/129 (54%)
Query: 30 NGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRC 89
NG+ + E + FY N+AE + V + G + +++ Y Q + +++++ +
Sbjct: 739 NGLEQIERDNSFY-NMAEVHFTVKFIQALIASGIDGSAVGVITFYKSQMYKLQNLLRSIH 797
Query: 90 ADN-PLIGRPHKVTTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVF 148
++ P+ + +V+TVD +QG + + ++LS VRT G +R+ VA++RA+ L +
Sbjct: 798 SEAFPV--KAVQVSTVDAFQGAEKEIVVLSCVRTRQTGFTDSEKRMNVALTRAKRHLLIV 855
Query: 149 ARVS-LFRN 156
++ L +N
Sbjct: 856 GNLACLSKN 864
>RGD|1589127 [details] [associations]
symbol:LOC684558 "similar to regulator of nonsense transcripts
1" species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IEA]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA]
GO:GO:0006260 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 IPI:IPI00767398
PRIDE:F1LY19 Ensembl:ENSRNOT00000027268 Uniprot:F1LY19
Length = 391
Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 37 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 96
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 97 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 145
>UNIPROTKB|G5EA02 [details] [associations]
symbol:C4orf21 "Uncharacterized protein C4orf21"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
EMBL:CH471057 InterPro:IPR018838 Pfam:PF10382 UniGene:Hs.713663
RefSeq:NP_060862.3 UniGene:Hs.380346 GeneID:55345 KEGG:hsa:55345
CTD:55345 GenomeRNAi:55345 NextBio:59679 EMBL:AC106864
EMBL:AC023886 PRIDE:G5EA02 Ensembl:ENST00000505019 HGNC:HGNC:25654
OMA:NTYESSG ArrayExpress:G5EA02 Bgee:G5EA02 Uniprot:G5EA02
Length = 2104
Score = 133 (51.9 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 34/125 (27%), Positives = 67/125 (53%)
Query: 31 GVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCA 90
G+ + E + F+ N+AEA + + L + G I +++ Y Q + + +++
Sbjct: 1922 GLEQIERDNSFH-NVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDF 1980
Query: 91 DNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVFAR 150
+P I + +V+TVD +QG + + I+LS VRT VG + +R+ VA++R + L +
Sbjct: 1981 HHPDI-KTVQVSTVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGKRHLLIVGN 2039
Query: 151 VSLFR 155
++ R
Sbjct: 2040 LACLR 2044
>ASPGD|ASPL0000056713 [details] [associations]
symbol:AN0646 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001308 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
HOGENOM:HOG000205990 OMA:MFYEGSL ProteinModelPortal:C8VS08
EnsemblFungi:CADANIAT00002030 Uniprot:C8VS08
Length = 1077
Score = 129 (50.5 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 53/216 (24%), Positives = 90/216 (41%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + G I I++ Y GQ+ I + + +V
Sbjct: 717 YLNRTEAANVEKIVTRFFKAGVQPKDIGIITPYEGQRSYIVSSMQATGTFKKEHYKEIEV 776
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYVFARVSLFRNCF 158
+VD +QG++ D+I+LS VR+ +G L D RRL VA++RA+ GL + +
Sbjct: 777 ASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGNPKVLSK-- 834
Query: 159 ELTPAFNQLMIRPQQLHIV---PHETFPTSRLNTSRVPNSVA----IQDMVHMTTLVYNF 211
P +N L+ ++ H + P S + SR + Q + + V +
Sbjct: 835 --HPLWNCLLQHFKERHTLVEGPLSNLQESLIQFSRPKQAYRGPQRFQMAYNHVSNVTSG 892
Query: 212 YMDKVNGMKKEFYSKAKLNADKWKKPGDIEEFYSKA 247
+M+ NG + EF+ + P D+ +S A
Sbjct: 893 FMNGRNGHRNEFHDTGSVVG---YIPDDVSSVHSSA 925
>POMBASE|SPBC29A10.10c [details] [associations]
symbol:SPBC29A10.10c "tRNA-splicing endonuclease
positive effector (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=ISO] [GO:0016180 "snRNA processing" evidence=ISO]
[GO:0035649 "Nrd1 complex" evidence=ISO] [GO:0043144 "snoRNA
processing" evidence=ISO] InterPro:IPR024714 PomBase:SPBC29A10.10c
GO:GO:0005524 GO:GO:0005634 EMBL:CU329671 GO:GO:0008033
eggNOG:COG1112 GO:GO:0006364 GO:GO:0004004 GO:GO:0006369
GO:GO:0043144 GO:GO:0016180 KO:K10706 GO:GO:0035649
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
OrthoDB:EOG4MPMZ6 PIR:T40065 RefSeq:NP_596055.1
ProteinModelPortal:O94387 EnsemblFungi:SPBC29A10.10c.1
GeneID:2540523 KEGG:spo:SPBC29A10.10c NextBio:20801650
Uniprot:O94387
Length = 1944
Score = 131 (51.2 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 41/128 (32%), Positives = 67/128 (52%)
Query: 29 FNGVG-ESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAH-----KITILSTYNGQKHLIR 82
FN G E+ N N+ EA + L +Y RL+ + KI +++ Y Q +R
Sbjct: 1628 FNVHGTEAFSNSKSLYNVEEASFI--LLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLR 1685
Query: 83 DVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTA---SVGHLRDVRRLIVAMS 139
+ +I + + TVD +QGQ+ D I+ S VR++ +G L+D+RRL VA++
Sbjct: 1686 SQFQRKYGS--IIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALT 1743
Query: 140 RARLGLYV 147
RA+ LY+
Sbjct: 1744 RAKSSLYI 1751
Score = 46 (21.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 191 RVPNSVAIQDMVHMTTLVYNFYMDKVNGMKKEFYSK---AKLNADKWKKPGDIEEFYSKA 247
R N V+ D V +D+ + K++ +K +++ KKPG +E+ +K
Sbjct: 1854 RAKNKVST-DQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQASSKKPGYVEK--NKD 1910
Query: 248 KLNADKWKKP 257
K + K KKP
Sbjct: 1911 KGHMKKSKKP 1920
>WB|WBGene00016566 [details] [associations]
symbol:eri-7 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0019079 "viral
genome replication" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 GO:GO:0000003
GO:GO:0017111 InterPro:IPR014001 SMART:SM00487 EMBL:FO080509
GeneTree:ENSGT00700000104572 PIR:T28788 RefSeq:NP_491374.2
ProteinModelPortal:O01976 SMR:O01976 EnsemblMetazoa:C41D11.7
GeneID:172047 KEGG:cel:CELE_C41D11.7 UCSC:C41D11.7.1 CTD:172047
WormBase:C41D11.7 InParanoid:O01976 OMA:NDEEMIN NextBio:873807
ArrayExpress:O01976 Uniprot:O01976
Length = 625
Score = 124 (48.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 26 VEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHK--ITILSTYNGQKHLIRD 83
V D N + +++ + Y NLAEA+ +A+ Y RLL Y I I++ Y GQ L+
Sbjct: 375 VFDTNSINKTKQG-FSYANLAEAK--IAIGHYQRLLKYGVQPSDIAIITPYKGQTSLVTK 431
Query: 84 VINTRCADNPLIGRPHK-VTTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMS 139
++ A+ + TVD QG++ + ++ ++VR+ ++G + ++RRL V ++
Sbjct: 432 LMEEFGAETGYTDFVQTTIGTVDSVQGKEYEVVIFTMVRSNPRKTMGFVSELRRLNVVIT 491
Query: 140 RAR 142
RA+
Sbjct: 492 RAK 494
>POMBASE|SPAC6G9.10c [details] [associations]
symbol:sen1 "ATP-dependent 5' to 3' DNA/RNA helicase
Sen1" species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006364 "rRNA processing" evidence=ISO] [GO:0006369
"termination of RNA polymerase II transcription" evidence=ISO]
[GO:0008033 "tRNA processing" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016180 "snRNA
processing" evidence=ISO] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0035649 "Nrd1 complex"
evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0043144 "snoRNA processing"
evidence=ISO] InterPro:IPR024714 PomBase:SPAC6G9.10c GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006397
GO:GO:0008033 eggNOG:COG1112 GO:GO:0006364 GO:GO:0006369
GO:GO:0043144 GO:GO:0043141 GO:GO:0016180 KO:K10706 GO:GO:0035649
PIR:T39072 RefSeq:NP_594119.1 ProteinModelPortal:Q92355
EnsemblFungi:SPAC6G9.10c.1 GeneID:2541556 KEGG:spo:SPAC6G9.10c
OrthoDB:EOG4BCHWF NextBio:20802652 GO:GO:0032575 InterPro:IPR024481
PANTHER:PTHR10887:SF164 Pfam:PF12726 Uniprot:Q92355
Length = 1687
Score = 128 (50.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 41/130 (31%), Positives = 61/130 (46%)
Query: 34 ESEPNPYFYQNLAEAEYCVALFMYMRLLG-YP----AHKITILSTYNGQKHLIRDVINTR 88
E N NL E EY V M LL +P +I +++ Y Q H +R +
Sbjct: 1496 ERTSNTMSTYNLEEVEYLVN--MVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKVK 1553
Query: 89 CADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTAS---VGHLRDVRRLIVAMSRARLGL 145
+ + + TVD +QGQ+ D I S V++ S +G LRD RRL VA++RAR L
Sbjct: 1554 YGKSFM--STIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSL 1611
Query: 146 YVFARVSLFR 155
+ + +
Sbjct: 1612 LIIGNMETLK 1621
>ZFIN|ZDB-GENE-040426-2836 [details] [associations]
symbol:upf1 "upf1 regulator of nonsense
transcripts homolog (yeast)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009790 "embryo
development" evidence=IMP] InterPro:IPR018999 Pfam:PF09416
ZFIN:ZDB-GENE-040426-2836 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0009790 GO:GO:0004386
HOGENOM:HOG000205990 KO:K14326 CTD:5976 HOVERGEN:HBG061556
EMBL:BC045353 EMBL:FM986817 IPI:IPI00491565 RefSeq:NP_998639.1
UniGene:Dr.96025 SMR:Q7ZVZ4 STRING:Q7ZVZ4 GeneID:406783
KEGG:dre:406783 NextBio:20818296 Uniprot:Q7ZVZ4
Length = 1100
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 744 YLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 803
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 804 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 852
>MGI|MGI:107995 [details] [associations]
symbol:Upf1 "UPF1 regulator of nonsense transcripts homolog
(yeast)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0000785 "chromatin" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006449 "regulation of
translational termination" evidence=ISO] [GO:0007049 "cell cycle"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=ISO] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=ISO] InterPro:IPR018999 Pfam:PF09416 MGI:MGI:107995
GO:GO:0005524 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0000785
GO:GO:0003682 GO:GO:0003723 GO:GO:0007049 GO:GO:0000932
eggNOG:COG1112 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GO:GO:0006449 GeneTree:ENSGT00550000074391
HOGENOM:HOG000205990 KO:K14326 OMA:MFYEGSL CTD:5976
HOVERGEN:HBG061556 ChiTaRS:UPF1 EMBL:AF322655 EMBL:AY597039
EMBL:AY597038 EMBL:AK148196 EMBL:BC030916 EMBL:BC052149
EMBL:BC056442 EMBL:AF182947 IPI:IPI00420949 IPI:IPI00850525
RefSeq:NP_001116301.1 RefSeq:NP_109605.2 UniGene:Mm.390048
ProteinModelPortal:Q9EPU0 SMR:Q9EPU0 STRING:Q9EPU0
PhosphoSite:Q9EPU0 PaxDb:Q9EPU0 PRIDE:Q9EPU0
Ensembl:ENSMUST00000075666 GeneID:19704 KEGG:mmu:19704
UCSC:uc009mab.2 UCSC:uc012gfa.1 InParanoid:Q9EPU0 OrthoDB:EOG4P8FH8
NextBio:297078 Bgee:Q9EPU0 Genevestigator:Q9EPU0
GermOnline:ENSMUSG00000058301 Uniprot:Q9EPU0
Length = 1124
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 770 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 829
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 830 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 878
>UNIPROTKB|E1BEK9 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0044530 "supraspliceosomal complex" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] InterPro:IPR018999
Pfam:PF09416 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0007049 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145
GeneTree:ENSGT00550000074391 OMA:MFYEGSL EMBL:DAAA02019036
IPI:IPI00685259 Ensembl:ENSBTAT00000027868 Uniprot:E1BEK9
Length = 1127
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 773 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 832
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 833 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 881
>UNIPROTKB|Q92900 [details] [associations]
symbol:UPF1 "Regulator of nonsense transcripts 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;IMP;TAS] [GO:0006449 "regulation of translational
termination" evidence=IMP;NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005737
"cytoplasm" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000785 "chromatin"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0007049 "cell cycle" evidence=IMP] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005524 GO:GO:0010467 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0003723 GO:GO:0007049
GO:GO:0006406 GO:GO:0000932 eggNOG:COG1112 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145 EMBL:AC003972
GO:GO:0044530 GO:GO:0006449 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL CTD:5976 EMBL:U65533 EMBL:U59323 EMBL:D86988
EMBL:AF074016 EMBL:BC039817 IPI:IPI00034049 IPI:IPI00399170
RefSeq:NP_002902.2 UniGene:Hs.515266 PDB:2GJK PDB:2GK6 PDB:2GK7
PDB:2IYK PDB:2WJV PDB:2WJY PDB:2XZO PDB:2XZP PDBsum:2GJK
PDBsum:2GK6 PDBsum:2GK7 PDBsum:2IYK PDBsum:2WJV PDBsum:2WJY
PDBsum:2XZO PDBsum:2XZP ProteinModelPortal:Q92900 SMR:Q92900
DIP:DIP-29875N IntAct:Q92900 MINT:MINT-5005507 STRING:Q92900
PhosphoSite:Q92900 DMDM:17380291 PaxDb:Q92900 PRIDE:Q92900
Ensembl:ENST00000262803 GeneID:5976 KEGG:hsa:5976 UCSC:uc002nkf.3
UCSC:uc002nkg.3 GeneCards:GC19P018942 HGNC:HGNC:9962 HPA:HPA019587
HPA:HPA020857 MIM:601430 neXtProt:NX_Q92900 PharmGKB:PA34328
HOVERGEN:HBG061556 InParanoid:Q92900 ChiTaRS:UPF1
EvolutionaryTrace:Q92900 GenomeRNAi:5976 NextBio:23259
ArrayExpress:Q92900 Bgee:Q92900 CleanEx:HS_UPF1
Genevestigator:Q92900 GermOnline:ENSG00000005007 Uniprot:Q92900
Length = 1129
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 775 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 834
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 835 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 883
>UNIPROTKB|E2RL81 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AAEX03012279 Ensembl:ENSCAFT00000023180 Uniprot:E2RL81
Length = 1130
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 776 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 835
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 836 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 884
>UNIPROTKB|H0Y455 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 GO:GO:0017108 GO:GO:0043142 GO:GO:0033567
PANTHER:PTHR10887:SF14 EMBL:AL136233 HGNC:HGNC:2939
ProteinModelPortal:H0Y455 PRIDE:H0Y455 Ensembl:ENST00000440722
Bgee:H0Y455 Uniprot:H0Y455
Length = 375
Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
Identities = 45/129 (34%), Positives = 64/129 (49%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA+ V L G I I++ Y Q +I D++ R IG +V T
Sbjct: 235 NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLL-ARS-----IGMV-EVNT 287
Query: 104 VDKYQGQQNDYILLSLVRT---ASVGHL-RDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
VDKYQG+ +L+S VR+ +VG L +D RRL VA++RA+ L + V NC+
Sbjct: 288 VDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSL-NCYP 346
Query: 160 -LTPAFNQL 167
L N L
Sbjct: 347 PLEKLLNHL 355
>SGD|S000000978 [details] [associations]
symbol:ECM32 "DNA dependent ATPase/DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0006449 "regulation of translational
termination" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] SGD:S000000978 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0003723 EMBL:BK006939 GO:GO:0005844
eggNOG:COG1112 GeneTree:ENSGT00700000104467 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 EMBL:U18922 GO:GO:0003724 PIR:S30862
RefSeq:NP_011103.1 ProteinModelPortal:P32644 SMR:P32644
DIP:DIP-5404N IntAct:P32644 MINT:MINT-499764 STRING:P32644
PaxDb:P32644 PeptideAtlas:P32644 EnsemblFungi:YER176W GeneID:856923
KEGG:sce:YER176W CYGD:YER176w HOGENOM:HOG000094475 OMA:KDTPRGT
OrthoDB:EOG4P8JS8 NextBio:983389 Genevestigator:P32644
GermOnline:YER176W GO:GO:0006449 Uniprot:P32644
Length = 1121
Score = 110 (43.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 101 VTTVDKYQGQQNDYILLSLVRTAS---VGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
V TVD +QG + +I+ S VR + +G LRD RRL VA++RA+ GL V ++ R
Sbjct: 1038 VATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLR 1095
Score = 59 (25.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 40 YFYQNLAEAEYCVALFMYMRL-LGYPAHKITILSTYNGQKHLIRDVINTRCADNP 93
+ Y+N E V + + L P +I +++ Y+ Q+ L+ D++ NP
Sbjct: 944 FTYENKHECVEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINP 998
>CGD|CAL0001700 [details] [associations]
symbol:orf19.702 species:5476 "Candida albicans" [GO:0003678
"DNA helicase activity" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0006449 "regulation of translational termination"
evidence=IEA] InterPro:IPR003593 InterPro:IPR007087
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00382 CGD:CAL0001700 GO:GO:0005524 GO:GO:0008270
GO:GO:0005622 GO:GO:0017111 eggNOG:COG1112 EMBL:AACQ01000183
EMBL:AACQ01000182 RefSeq:XP_711775.1 RefSeq:XP_711793.1
ProteinModelPortal:Q59PZ8 GeneID:3646609 GeneID:3646623
KEGG:cal:CaO19.702 KEGG:cal:CaO19.8321 Uniprot:Q59PZ8
Length = 1105
Score = 118 (46.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 101 VTTVDKYQGQQNDYILLSLVRTAS---VGHLRDVRRLIVAMSRARLGLYVFARVSLFRNC 157
+ ++D +QG++ DY+++S VR+ + +G LRD RRL VA++RA+ GL + +N
Sbjct: 1021 IASIDAFQGREKDYMIMSCVRSNTKGVIGFLRDERRLNVALTRAKYGLIMVGDKKCLQNG 1080
Query: 158 FELTPAFNQLMIRPQQLHIVPHETF 182
+L + Q + + +H ++TF
Sbjct: 1081 DKLWKEYLQYLDSKKAIH--DNDTF 1103
Score = 49 (22.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 36 EPNPYFYQNLAEAEYCVALFMYMRLL-GYPAHKITILSTYNGQKHLI 81
E Y Y N E Y + + + G +I I++ Y+GQ+ LI
Sbjct: 932 EDGGYTYTNRDEIGYIQQVLRTLIITKGVKPEQIGIITPYSGQRDLI 978
>UNIPROTKB|G4ND47 [details] [associations]
symbol:MGG_00976 "Regulator-nonsense transcripts 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 EMBL:CM001235 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
KO:K14326 RefSeq:XP_003717973.1 ProteinModelPortal:G4ND47
SMR:G4ND47 EnsemblFungi:MGG_00976T0 GeneID:2674784
KEGG:mgr:MGG_00976 Uniprot:G4ND47
Length = 1105
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 34/110 (30%), Positives = 57/110 (51%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQK-HLIRDVINTRCADNPLIGRPHK 100
Y N EA L G I +++ Y GQ+ +++ + NT + +
Sbjct: 745 YLNRTEASNVEKLVTRFFKAGVKPGDIGVVTPYEGQRSYIVSTMQNTGTFKKESY-KEVE 803
Query: 101 VTTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
V +VD +QG++ D+I+LS VR+ +G L D RRL VA++RA+ G+ +
Sbjct: 804 VASVDAFQGREKDFIVLSCVRSNESQGIGFLSDPRRLNVALTRAKYGVVI 853
>UNIPROTKB|E1C0J4 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
GeneTree:ENSGT00550000074391 EMBL:AADN02071779 IPI:IPI00598917
Ensembl:ENSGALT00000005099 NextBio:20823079 ArrayExpress:E1C0J4
Uniprot:E1C0J4
Length = 1117
Score = 125 (49.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 763 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 822
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 823 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 871
Score = 39 (18.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 190 SRVPNSVAIQDMVHMT----TLVYNFY-MDKVNGMKKEFYSKAKLNADKWKKPGDIEEFY 244
S +PNS A QD+V L + M + + M + S+ +L+ D + GD EF
Sbjct: 1032 SNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYL--GD--EFK 1087
Query: 245 SK 246
S+
Sbjct: 1088 SQ 1089
>POMBASE|SPBC16D10.04c [details] [associations]
symbol:dna2 "DNA replication endonuclease-helicase
Dna2" species:4896 "Schizosaccharomyces pombe" [GO:0000084 "S phase
of mitotic cell cycle" evidence=IC] [GO:0000723 "telomere
maintenance" evidence=IGI] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=ISO] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004518 "nuclease activity"
evidence=IMP] [GO:0004527 "exonuclease activity" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0019901 "protein
kinase binding" evidence=IPI] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IMP] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IMP] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0071932 "replication fork reversal" evidence=IMP]
InterPro:IPR026851 PomBase:SPBC16D10.04c InterPro:IPR014808
Pfam:PF08696 GO:GO:0005829 GO:GO:0005524 GO:GO:0046872
EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0051539
GO:GO:0043596 GO:GO:0004003 GO:GO:0004527 GO:GO:0000084
eggNOG:COG1112 GO:GO:0000784 GO:GO:0042162 GO:GO:0031573
GO:GO:0017108 GO:GO:0043137 GO:GO:0031860 GO:GO:0043142
PANTHER:PTHR10887:SF14 EMBL:AF144384 EMBL:AB028014 EMBL:AF075169
PIR:T39568 PIR:T47242 PIR:T51292 RefSeq:NP_596499.2 STRING:Q9URU2
GeneID:2540148 OrthoDB:EOG47H8Z4 NextBio:20801284 GO:GO:0071932
InterPro:IPR022765 Pfam:PF01930 Uniprot:Q9URU2
Length = 1397
Score = 122 (48.0 bits), Expect = 0.00036, P = 0.00036
Identities = 48/135 (35%), Positives = 67/135 (49%)
Query: 25 NVEDFNGVGESEPNPYFYQNLAEA---EYCVALFMYMRLLGYPAHKITILSTYNGQKHLI 81
N +D GV ES+ N +N EA E V+ F+ G I I+S Y Q L+
Sbjct: 1197 NTDDILGV-ESKTNNIL-ENHTEAFLIEQAVSSFLER---GVKQSSIGIISIYKSQVELL 1251
Query: 82 RDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTAS---VGHL-RDVRRLIVA 137
N + ++ TVD+YQG+ D IL+S VR+ S VG L RD RL VA
Sbjct: 1252 SK--NLKSFTEI------EINTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNVA 1303
Query: 138 MSRARLGLYVFARVS 152
+SRA++ +F +S
Sbjct: 1304 LSRAKVKCIMFGSLS 1318
>UNIPROTKB|E1C0J3 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0035145 "exon-exon
junction complex" evidence=IEA] [GO:0044530 "supraspliceosomal
complex" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AADN02071779 IPI:IPI00571950 Ensembl:ENSGALT00000005101
ArrayExpress:E1C0J3 Uniprot:E1C0J3
Length = 1128
Score = 125 (49.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 42 YQNLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKV 101
Y N EA + + G +I I++ Y GQ+ + + + + + + ++
Sbjct: 774 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 833
Query: 102 TTVDKYQGQQNDYILLSLVRT---ASVGHLRDVRRLIVAMSRARLGLYV 147
+VD +QG++ D+I+LS VR +G L D RRL VA++RAR G+ +
Sbjct: 834 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 882
Score = 39 (18.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 190 SRVPNSVAIQDMVHMT----TLVYNFY-MDKVNGMKKEFYSKAKLNADKWKKPGDIEEFY 244
S +PNS A QD+V L + M + + M + S+ +L+ D + GD EF
Sbjct: 1043 SNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYL--GD--EFK 1098
Query: 245 SK 246
S+
Sbjct: 1099 SQ 1100
>ZFIN|ZDB-GENE-070402-1 [details] [associations]
symbol:setx "senataxin" species:7955 "Danio rerio"
[GO:0006302 "double-strand break repair" evidence=IEA]
InterPro:IPR026121 ZFIN:ZDB-GENE-070402-1 GO:GO:0006302
InterPro:IPR024481 Pfam:PF12726 GeneTree:ENSGT00580000081652
PANTHER:PTHR10887:SF15 EMBL:CU927918 IPI:IPI00481119
Ensembl:ENSDART00000082314 Ensembl:ENSDART00000149777
Uniprot:E7FBJ2
Length = 2368
Score = 124 (48.7 bits), Expect = 0.00038, P = 0.00038
Identities = 42/151 (27%), Positives = 73/151 (48%)
Query: 9 EYQKANAGLVYDFQLINVEDFNGVGESEPNPYFYQNLAEAEYCVALFMYMRLLGYPAHKI 68
E + L + F+ V D E++ F N E V L + + L A ++
Sbjct: 2058 ETAQKRCSLSWPFKPYKVFDVMDGRETKERDSFI-NHKEVSL-VGLLLKL-LCKEQAVRV 2114
Query: 69 TILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTAS---- 124
+++ YN QKH I D I T + L +V TVD +QG++ D I++S VR +S
Sbjct: 2115 GVITPYNAQKHRILDAIKTSGINKQL---QVEVDTVDGFQGREMDCIIVSCVRASSEMGS 2171
Query: 125 VGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
+G + + +R+ V ++RA+ L++ + R
Sbjct: 2172 IGFVGNRQRMNVTITRAKFSLFILGHLRTLR 2202
>UNIPROTKB|F8VR31 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 EMBL:AL136233
HGNC:HGNC:2939 IPI:IPI01022599 ProteinModelPortal:F8VR31
Ensembl:ENST00000551118 UCSC:uc001jog.2 ArrayExpress:F8VR31
Bgee:F8VR31 Uniprot:F8VR31
Length = 807
Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
Identities = 45/129 (34%), Positives = 64/129 (49%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA+ V L G I I++ Y Q +I D++ R IG +V T
Sbjct: 675 NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLL-ARS-----IGMV-EVNT 727
Query: 104 VDKYQGQQNDYILLSLVRT---ASVGHL-RDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
VDKYQG+ +L+S VR+ +VG L +D RRL VA++RA+ L + V NC+
Sbjct: 728 VDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSL-NCYP 786
Query: 160 -LTPAFNQL 167
L N L
Sbjct: 787 PLEKLLNHL 795
>MGI|MGI:2443732 [details] [associations]
symbol:Dna2 "DNA replication helicase 2 homolog (yeast)"
species:10090 "Mus musculus" [GO:0000076 "DNA replication
checkpoint" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=ISO]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006264 "mitochondrial DNA
replication" evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0008152
"metabolic process" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0032508 "DNA
duplex unwinding" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=ISO] [GO:0043139
"5'-3' DNA helicase activity" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0043504 "mitochondrial DNA repair" evidence=ISO] [GO:0045740
"positive regulation of DNA replication" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR026851 InterPro:IPR014808
MGI:MGI:2443732 Pfam:PF08696 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0042645 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0000729 GO:GO:0017108 GO:GO:0000076 GO:GO:0043137
GO:GO:0005760 GO:GO:0043139 GO:GO:0043142 GO:GO:0043504
GO:GO:0006264 PANTHER:PTHR10887:SF14 CTD:1763 HOGENOM:HOG000168456
HOVERGEN:HBG081456 KO:K10742 EMBL:AK129051 EMBL:AK028381
EMBL:BC025182 EMBL:BC115716 IPI:IPI00224915 IPI:IPI00816966
RefSeq:NP_796346.2 UniGene:Mm.21492 ProteinModelPortal:Q6ZQJ5
SMR:Q6ZQJ5 STRING:Q6ZQJ5 PaxDb:Q6ZQJ5 PRIDE:Q6ZQJ5
Ensembl:ENSMUST00000092462 Ensembl:ENSMUST00000131422 GeneID:327762
KEGG:mmu:327762 UCSC:uc007fji.2 UCSC:uc007fjj.2
GeneTree:ENSGT00550000074852 InParanoid:Q6ZQJ5 OMA:EHESLCH
ChiTaRS:DNA2 NextBio:397947 Bgee:Q6ZQJ5 CleanEx:MM_DNA2
Genevestigator:Q6ZQJ5 GermOnline:ENSMUSG00000036875 Uniprot:Q6ZQJ5
Length = 1062
Score = 120 (47.3 bits), Expect = 0.00044, P = 0.00044
Identities = 42/128 (32%), Positives = 64/128 (50%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA V L G I +++ Y Q +I D++ R + +G +V T
Sbjct: 914 NVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLL-ARSS----VGMV-EVNT 967
Query: 104 VDKYQGQQNDYILLSLVRT---ASVGHL-RDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
VDKYQG+ IL+S VR+ ++G L +D RRL VA++RA+ L + VS +
Sbjct: 968 VDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVALTRAKHKLILLGSVSSLKRFPP 1027
Query: 160 LTPAFNQL 167
L F+ L
Sbjct: 1028 LGTLFDHL 1035
>UNIPROTKB|E1C4T7 [details] [associations]
symbol:Gga.18015 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654
GO:GO:0006302 GeneTree:ENSGT00580000081652 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:AADN02026516 IPI:IPI00575045
Ensembl:ENSGALT00000005801 Uniprot:E1C4T7
Length = 2503
Score = 123 (48.4 bits), Expect = 0.00053, P = 0.00053
Identities = 31/95 (32%), Positives = 56/95 (58%)
Query: 67 KITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRT---- 122
+I I++ Y+ QK I++ ++ +N P +V TVD +QG++ D I+++ VR
Sbjct: 2364 RIGIITPYSAQKKKIQEELDRVFKNNS----PGEVDTVDAFQGREKDCIIVTCVRANSSK 2419
Query: 123 ASVGHLRDVRRLIVAMSRARLGLYVFARV-SLFRN 156
S+G L ++RL V ++RAR L++ R+ +L N
Sbjct: 2420 GSIGFLASLQRLNVTITRARFSLFILGRLKTLMEN 2454
>UNIPROTKB|P51530 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0005524
"ATP binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0042645
"mitochondrial nucleoid" evidence=IDA] [GO:0043504 "mitochondrial
DNA repair" evidence=IDA] [GO:0006264 "mitochondrial DNA
replication" evidence=IDA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA] [GO:0045740 "positive regulation of DNA
replication" evidence=IDA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IDA] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0005760
"gamma DNA polymerase complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000076 "DNA replication checkpoint"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IDA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000729 "DNA double-strand
break processing" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IDA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0032201 "telomere
maintenance via semi-conservative replication" evidence=TAS]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0032508 "DNA
duplex unwinding" evidence=IDA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0051539 GO:GO:0042645 GO:GO:0000084 GO:GO:0016890
eggNOG:COG1112 GO:GO:0045740 GO:GO:0000722 GO:GO:0000729
GO:GO:0017108 Reactome:REACT_383 GO:GO:0000076 GO:GO:0043137
GO:GO:0043139 GO:GO:0043142 GO:GO:0043504 GO:GO:0006264
PANTHER:PTHR10887:SF14 CTD:1763 HOGENOM:HOG000168456
HOVERGEN:HBG081456 KO:K10742 EMBL:D42046 EMBL:AL136233
EMBL:BC041115 EMBL:BC053574 EMBL:BC063664 EMBL:BC111740
EMBL:BC028188 IPI:IPI00216142 IPI:IPI00816670 IPI:IPI00816801
PIR:T50697 RefSeq:NP_001073918.2 UniGene:Hs.532446
ProteinModelPortal:P51530 SMR:P51530 STRING:P51530
PhosphoSite:P51530 DMDM:119370373 PaxDb:P51530 PRIDE:P51530
Ensembl:ENST00000358410 Ensembl:ENST00000399179
Ensembl:ENST00000549829 GeneID:1763 KEGG:hsa:1763 UCSC:uc021prt.1
GeneCards:GC10M070173 HGNC:HGNC:2939 HPA:HPA037487 MIM:601810
neXtProt:NX_P51530 InParanoid:P51530 GenomeRNAi:1763 NextBio:7187
ArrayExpress:P51530 Bgee:P51530 CleanEx:HS_DNA2
Genevestigator:P51530 GermOnline:ENSG00000138346 GO:GO:0032201
Uniprot:P51530
Length = 1060
Score = 119 (46.9 bits), Expect = 0.00056, P = 0.00056
Identities = 45/129 (34%), Positives = 64/129 (49%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA+ V L G I I++ Y Q +I D++ R IG +V T
Sbjct: 913 NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLL-ARS-----IGMV-EVNT 965
Query: 104 VDKYQGQQNDYILLSLVRT---ASVGHL-RDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
VDKYQG+ +L+S VR+ +VG L +D RRL VA++RA+ L + V NC+
Sbjct: 966 VDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSL-NCYP 1024
Query: 160 -LTPAFNQL 167
L N L
Sbjct: 1025 PLEKLLNHL 1033
>UNIPROTKB|J3KPX5 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 EMBL:AL136233
HGNC:HGNC:2939 OMA:EHESLCH ProteinModelPortal:J3KPX5
Ensembl:ENST00000399180 Uniprot:J3KPX5
Length = 1146
Score = 119 (46.9 bits), Expect = 0.00061, P = 0.00061
Identities = 45/129 (34%), Positives = 64/129 (49%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA+ V L G I I++ Y Q +I D++ R IG +V T
Sbjct: 999 NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLL-ARS-----IGMV-EVNT 1051
Query: 104 VDKYQGQQNDYILLSLVRT---ASVGHL-RDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
VDKYQG+ +L+S VR+ +VG L +D RRL VA++RA+ L + V NC+
Sbjct: 1052 VDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSL-NCYP 1110
Query: 160 -LTPAFNQL 167
L N L
Sbjct: 1111 PLEKLLNHL 1119
>RGD|1306791 [details] [associations]
symbol:Dna2 "DNA replication helicase 2 homolog (yeast)"
species:10116 "Rattus norvegicus" [GO:0000076 "DNA replication
checkpoint" evidence=ISO;ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003678 "DNA helicase activity"
evidence=ISO;ISS] [GO:0004518 "nuclease activity" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=ISO;ISS]
[GO:0006264 "mitochondrial DNA replication" evidence=IEA;ISO]
[GO:0006284 "base-excision repair" evidence=IEA;ISO] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=IEA;ISO] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISO;ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=ISO;ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;ISO] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISO;ISS] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO;ISS] [GO:0043504 "mitochondrial DNA repair"
evidence=IEA;ISO] [GO:0045740 "positive regulation of DNA
replication" evidence=IEA;ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
RGD:1306791 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0051539 GO:GO:0042645 GO:GO:0016890
GO:GO:0045740 GO:GO:0000729 GO:GO:0017108 GO:GO:0000076
GO:GO:0043137 GO:GO:0005760 GO:GO:0043139 GO:GO:0043142
GO:GO:0033567 GO:GO:0043504 GO:GO:0006264 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 IPI:IPI00368049
ProteinModelPortal:D3ZG52 Ensembl:ENSRNOT00000000438
UCSC:RGD:1306791 OrthoDB:EOG4CZBF7 Uniprot:D3ZG52
Length = 1059
Score = 118 (46.6 bits), Expect = 0.00073, P = 0.00073
Identities = 43/128 (33%), Positives = 63/128 (49%)
Query: 44 NLAEAEYCVALFMYMRLLGYPAHKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTT 103
N+ EA V L G I I++ Y Q I D++ R + +G +V T
Sbjct: 911 NVTEARLIVFLTSTFIKAGCSPSDIGIIAPYRQQLRTITDLL-ARSS----VGMV-EVNT 964
Query: 104 VDKYQGQQNDYILLSLVRT---ASVGHL-RDVRRLIVAMSRARLGLYVFARVSLFRNCFE 159
VDKYQG+ IL+S VR+ ++G L +D RRL VA++RA+ L + VS +
Sbjct: 965 VDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPP 1024
Query: 160 LTPAFNQL 167
L F+ L
Sbjct: 1025 LEKLFDHL 1032
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 294 277 0.00080 115 3 11 22 0.46 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 60
No. of states in DFA: 607 (65 KB)
Total size of DFA: 206 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:03
No. of threads or processors used: 24
Search cpu time: 23.23u 0.09s 23.32t Elapsed: 00:00:29
Total cpu time: 23.24u 0.09s 23.33t Elapsed: 00:00:36
Start: Thu Aug 15 12:05:21 2013 End: Thu Aug 15 12:05:57 2013