RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12660
         (294 letters)



>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 26.5 bits (58), Expect = 3.7
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 10/102 (9%)

Query: 113 DYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYV-FARVSLFRNCFELTPAFNQLMI-R 170
           D++  S +R  S     ++R  + A     + +           N  E+  A + +M+ R
Sbjct: 89  DFVAASFIRKRSDVI--EIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVAR 146

Query: 171 PQQLHIVPHETFP------TSRLNTSRVPNSVAIQDMVHMTT 206
                 +P E           +   +R     A   +  M  
Sbjct: 147 GDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIK 188


>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain
           (RecB), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 395

 Score = 26.5 bits (57), Expect = 4.9
 Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 128 LRDVRRLI-VAMSRARLGLYVFA 149
           L +  RL+ VA++R+     +  
Sbjct: 310 LAEDLRLLYVALTRSVWHCSLGV 332


>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 25.9 bits (56), Expect = 5.1
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 101 VTTVDKYQGQQNDYILLSLVRTASVGHLRDVRRLIVAMSRARLGLYVFARVSLFR 155
             TV K QG + D+  L L    +    R    +  A++RAR  L ++A   +  
Sbjct: 175 AMTVHKSQGSEFDHAALILPSQRTPVVTR--ELVYTAVTRARRRLSLYADERILS 227


>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 591

 Score = 26.0 bits (56), Expect = 7.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 7/33 (21%)

Query: 98  PHKVTTVDKYQGQQNDYILLSLVRTASVGHLRD 130
           P K  T++KY G  +DY++      +SVGH+RD
Sbjct: 10  PAKAKTINKYLG--SDYVV-----KSSVGHIRD 35


>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
           domain {Leishmania mexicana [TaxId: 5665]}
          Length = 258

 Score = 25.3 bits (55), Expect = 8.0
 Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 29/175 (16%)

Query: 66  HKITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLSLVRTASV 125
           H+ TI +       L  ++        P          +     Q  D I  S +R+A  
Sbjct: 60  HQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIRSAE- 118

Query: 126 GHLRDVRRLIVAMSRARLGLYVFARV---SLFRNCFELTPAFNQLMI---------RPQQ 173
                V  +  A+      + +  ++      +N   +    + +M+           ++
Sbjct: 119 ----QVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEK 174

Query: 174 LHIVPHETFPTSRLNTSRVPNSVAIQDMVHMT----------TLVYNFYMDKVNG 218
           + +        S+ N +  P   A Q +  MT          + V N   +  + 
Sbjct: 175 VVVAQKIL--ISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADC 227


>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), N-terminal domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 302

 Score = 25.3 bits (54), Expect = 9.7
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 67  KITILSTYNGQKHLIRDVINTRCADNPLIGRPHKVTTVDKYQGQQNDYILLS 118
            +T++ T +   HL    +       P+ G   +V   D+   +  + + L 
Sbjct: 2   TLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLD 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,103,601
Number of extensions: 50600
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 9
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)