BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12663
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54356|TSG_DROME Protein twisted gastrulation OS=Drosophila melanogaster GN=tsg
PE=1 SV=1
Length = 249
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 38 LVLAIVLFSS--TSKGCNEAVCASIVSKCMITQSCKCDMKNCTCCKDCLNCLSYLWTECC 95
L + I +SS GCNE VC S+VSKC+ITQSC+C + +C CCKDCLNCL L+ ECC
Sbjct: 10 LFVGIAPWSSLANDDGCNEVVCGSVVSKCLITQSCQCKLNDCHCCKDCLNCLGELYIECC 69
Query: 96 SCV 98
C+
Sbjct: 70 GCL 72
>sp|Q9EP52|TWSG1_MOUSE Twisted gastrulation protein homolog 1 OS=Mus musculus GN=Twsg1
PE=1 SV=1
Length = 222
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 29 RLILLSLSSLVLAIVLFSSTSKGCNEAVCASIVSKCMITQSCKC--DMKNCTCCKDCLNC 86
I+L+L+SL + L S+ CN+A+CAS VSKC+I + C+C NC CCK+C+ C
Sbjct: 4 HYIVLALASLTFLLCL--PVSQSCNKALCASDVSKCLIQELCQCRPGEGNCPCCKECMLC 61
Query: 87 LSYLWTECCSCVA 99
L LW ECC CV
Sbjct: 62 LGALWDECCDCVG 74
>sp|Q9GZX9|TWSG1_HUMAN Twisted gastrulation protein homolog 1 OS=Homo sapiens GN=TWSG1
PE=2 SV=1
Length = 223
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 32 LLSLSSLVLAIVLFSS---TSKGCNEAVCASIVSKCMITQSCKC--DMKNCTCCKDCLNC 86
L ++ L LAI++F + S CN+A+CAS VSKC+I + C+C NC+CCK+C+ C
Sbjct: 3 LHYVAVLTLAILMFLTWLPESLSCNKALCASDVSKCLIQELCQCRPGEGNCSCCKECMLC 62
Query: 87 LSYLWTECCSCVA 99
L LW ECC CV
Sbjct: 63 LGALWDECCDCVG 75
>sp|Q5RAW4|TWSG1_PONAB Twisted gastrulation protein homolog 1 OS=Pongo abelii GN=TWSG1
PE=2 SV=1
Length = 223
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 32 LLSLSSLVLAIVLFSS---TSKGCNEAVCASIVSKCMITQSCKC--DMKNCTCCKDCLNC 86
L ++ L LAI++F + S CN+A+CAS VSKC+I + C+C NC+CCK+C+ C
Sbjct: 3 LHYVAVLTLAILMFLTWLPASLSCNKALCASDVSKCLIQELCQCRPGEGNCSCCKECMLC 62
Query: 87 LSYLWTECCSCVA 99
L LW ECC CV
Sbjct: 63 LEALWDECCDCVG 75
>sp|Q98T89|TWSG1_CHICK Twisted gastrulation protein homolog 1 OS=Gallus gallus GN=TWSG1
PE=2 SV=1
Length = 224
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 51 GCNEAVCASIVSKCMITQSCKC--DMKNCTCCKDCLNCLSYLWTECCSCVA 99
GCN+A+CAS VSKC+I + C+C NC+CCK+C+ CL LW ECC CV
Sbjct: 26 GCNKALCASDVSKCLIQELCQCRPGEGNCSCCKECMLCLGTLWDECCDCVG 76
>sp|Q9DGH0|TWS1A_DANRE Twisted gastrulation protein homolog 1-A OS=Danio rerio GN=twsg1a
PE=2 SV=1
Length = 217
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 51 GCNEAVCASIVSKCMITQSCKCDMK--NCTCCKDCLNCLSYLWTECCSCVA 99
GCN+A+CAS VSKC++ C+C + NC+CCK+C+ CLS LW ECC CV
Sbjct: 26 GCNKALCASDVSKCLLQGLCQCRPQEGNCSCCKECMLCLSSLWEECCDCVG 76
>sp|Q98SR9|TWS1B_DANRE Twisted gastrulation protein homolog 1-B OS=Danio rerio GN=twsg1b
PE=2 SV=1
Length = 222
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 51 GCNEAVCASIVSKCMITQSCKCDM--KNCTCCKDCLNCLSYLWTECCSCVA 99
CN+A+CAS VSKC+I + C+C NC+CCK+C+ CL LW ECC CV
Sbjct: 24 ACNKALCASDVSKCLIQELCQCRPADGNCSCCKECMLCLGSLWEECCDCVG 74
>sp|Q98T88|TWS1A_XENLA Twisted gastrulation protein homolog 1-A OS=Xenopus laevis
GN=twsg1-a PE=1 SV=1
Length = 216
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 52 CNEAVCASIVSKCMITQSCKCDM--KNCTCCKDCLNCLSYLWTECCSCVA 99
CN+A+CAS VSKC+I + C+C NC+CCK+C+ CL LW ECC CV
Sbjct: 26 CNKALCASDVSKCLIQELCQCRPTDGNCSCCKECMLCLGTLWDECCDCVG 75
>sp|Q9I8M9|TWS1B_XENLA Twisted gastrulation protein homolog 1-B OS=Xenopus laevis
GN=twsg1-b PE=1 SV=1
Length = 218
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 52 CNEAVCASIVSKCMITQSCKCDM--KNCTCCKDCLNCLSYLWTECCSCVA 99
CN+A+CAS VSKC+I + C+C NC+CCK+C+ CL LW ECC CV
Sbjct: 26 CNKALCASDVSKCLIQELCQCRPTDGNCSCCKECMLCLGTLWDECCDCVG 75
>sp|A6QL50|FA72A_BOVIN Protein FAM72A OS=Bos taurus GN=FAM72A PE=1 SV=1
Length = 149
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 26 RMLRLILLSLSSLVLAIVLFSSTSKGCNEAVCASIVSKCMITQSCKCDMKNCTCCKDCLN 85
R ++ +LL+ + I LFS+ N + +C T+ CKC +K+ C K C N
Sbjct: 28 RGMKAVLLADTE----IDLFSTDIPPTNAV---DFIGRCYFTEICKCKLKDIACLK-CGN 79
Query: 86 CLSY-LWTECCSCV 98
+ Y + CCSC+
Sbjct: 80 IVGYHVIVPCCSCL 93
>sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2
Length = 6254
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 17/69 (24%)
Query: 43 VLFSSTSKGCNEAVCASIVSKCMITQSCKCDMKN-----CTCCKDCLNCLSYLWTECCS- 96
+L ST + C+ V S I ++C CDM+ CT ++ E CS
Sbjct: 888 ILRDSTFRDCHNKVDPSAYHDVCIEEACACDMEGKYLGFCTAVA--------MYAEACSA 939
Query: 97 ---CVAWEQ 102
CV+W +
Sbjct: 940 VGVCVSWRK 948
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.131 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,963,094
Number of Sequences: 539616
Number of extensions: 935656
Number of successful extensions: 4796
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 4554
Number of HSP's gapped (non-prelim): 216
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)