Query psy12663
Match_columns 107
No_of_seqs 46 out of 48
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 16:20:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07172 GRP: Glycine rich pro 62.0 6.6 0.00014 27.3 2.0 20 28-47 2-21 (95)
2 PF02932 Neur_chan_memb: Neuro 43.6 47 0.001 21.2 3.6 21 19-39 212-232 (237)
3 PF12615 TraD_N: F sex factor 41.2 45 0.00097 22.6 3.4 28 13-40 66-93 (101)
4 TIGR01006 polys_exp_MPA1 polys 40.2 54 0.0012 24.1 4.0 22 18-39 8-29 (226)
5 PF11127 DUF2892: Protein of u 38.2 52 0.0011 20.3 3.1 18 21-38 5-22 (66)
6 PHA01077 putative lower collar 34.6 25 0.00055 29.0 1.6 16 12-28 217-232 (251)
7 PF08139 LPAM_1: Prokaryotic m 33.8 54 0.0012 18.5 2.4 16 25-40 4-19 (25)
8 PRK09494 glnP glutamine ABC tr 31.1 99 0.0021 22.7 4.1 28 12-40 1-28 (219)
9 PRK15107 glutamate/aspartate t 30.5 1E+02 0.0023 22.4 4.1 25 12-37 2-26 (224)
10 PRK14710 hypothetical protein; 30.2 87 0.0019 22.3 3.6 28 22-49 6-33 (86)
11 PF11947 DUF3464: Protein of u 29.1 68 0.0015 24.4 3.0 12 24-35 58-69 (153)
12 PF10779 XhlA: Haemolysin XhlA 27.1 1.3E+02 0.0028 19.3 3.7 23 21-43 47-69 (71)
13 PF07330 DUF1467: Protein of u 26.8 76 0.0017 21.9 2.7 21 26-46 48-68 (85)
14 PF03908 Sec20: Sec20; InterP 26.0 1.2E+02 0.0026 20.0 3.5 19 22-40 66-84 (92)
15 PHA02898 virion envelope prote 25.5 1E+02 0.0022 22.3 3.3 29 25-53 41-73 (92)
16 PRK06231 F0F1 ATP synthase sub 23.0 87 0.0019 23.8 2.7 29 27-55 3-31 (205)
17 PF12729 4HB_MCP_1: Four helix 22.4 1.2E+02 0.0026 19.5 2.9 10 28-37 5-14 (181)
18 TIGR02161 napC_nirT periplasmi 21.0 1.6E+02 0.0036 22.5 3.8 8 51-58 42-49 (185)
19 PRK14125 cell division suppres 20.8 1.2E+02 0.0026 21.1 2.9 17 26-42 3-19 (103)
20 PF08016 PKD_channel: Polycyst 20.3 2.2E+02 0.0047 23.1 4.6 33 8-40 311-344 (425)
No 1
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=61.96 E-value=6.6 Score=27.33 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy12663 28 LRLILLSLSSLVLAIVLFSS 47 (107)
Q Consensus 28 ~r~i~~~~~~~vl~~~~~i~ 47 (107)
-+|+++++.+++.+++++++
T Consensus 2 aSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 2 ASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred chhHHHHHHHHHHHHHHHHh
Confidence 35555555444333333333
No 2
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=43.65 E-value=47 Score=21.19 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=14.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q psy12663 19 YLIDNLDRMLRLILLSLSSLV 39 (107)
Q Consensus 19 ~~~~~~~~~~r~i~~~~~~~v 39 (107)
+...-+||+.|.++.+++++.
T Consensus 212 ~~A~viDR~~~~~F~i~f~~~ 232 (237)
T PF02932_consen 212 FVAMVIDRLFRILFPIAFILF 232 (237)
T ss_dssp STSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 455678898888777665543
No 3
>PF12615 TraD_N: F sex factor protein N terminal; InterPro: IPR022585 This domain of unknown function is found in bacteria, and is typically between 96 and 107 amino acids in length. It is probably periplasmic and is found N-terminal to the DNA binding domain PF10412 from PFAM. TraD is a hexameric ring ATPase that is part of the bacterial F sex factor complex and involved in bacterial conjugation [], [], [].
Probab=41.21 E-value=45 Score=22.63 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=22.4
Q ss_pred eecchhhhhhhHHHHHHHHHHHHHHHHH
Q psy12663 13 QFNQQFYLIDNLDRMLRLILLSLSSLVL 40 (107)
Q Consensus 13 ~~~~~~~~~~~~~~~~r~i~~~~~~~vl 40 (107)
|+-+.+|++|.=|.+|+.+...+.++.+
T Consensus 66 q~L~~~~~~~~~~~~~~~l~~~al~a~~ 93 (101)
T PF12615_consen 66 QQLHDPYMVDCGDQFWQELQISALIAGV 93 (101)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556789999999999999887776443
No 4
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=40.17 E-value=54 Score=24.12 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q psy12663 18 FYLIDNLDRMLRLILLSLSSLV 39 (107)
Q Consensus 18 ~~~~~~~~~~~r~i~~~~~~~v 39 (107)
+-+.|=+..+||++.+.+++.+
T Consensus 8 i~l~~l~~~l~r~~~~ill~~l 29 (226)
T TIGR01006 8 IDLLQLLKKLWKRKLLILIVAL 29 (226)
T ss_pred ecHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666555444433
No 5
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=38.18 E-value=52 Score=20.29 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy12663 21 IDNLDRMLRLILLSLSSL 38 (107)
Q Consensus 21 ~~~~~~~~r~i~~~~~~~ 38 (107)
+.+.||+.|.++-+.+++
T Consensus 5 vg~~dR~~R~~~G~~l~~ 22 (66)
T PF11127_consen 5 VGTTDRIVRIIIGIVLLA 22 (66)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 457899999876555443
No 6
>PHA01077 putative lower collar protein
Probab=34.60 E-value=25 Score=29.05 Aligned_cols=16 Identities=56% Similarity=0.991 Sum_probs=12.7
Q ss_pred eeecchhhhhhhHHHHH
Q psy12663 12 MQFNQQFYLIDNLDRML 28 (107)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (107)
-|||.| |||||||...
T Consensus 217 TQF~~q-~~~~~id~~~ 232 (251)
T PHA01077 217 TQFTKQ-YLIDNIDKAY 232 (251)
T ss_pred ceeehh-hHHhhHHHHH
Confidence 478877 7999999754
No 7
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=33.80 E-value=54 Score=18.55 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12663 25 DRMLRLILLSLSSLVL 40 (107)
Q Consensus 25 ~~~~r~i~~~~~~~vl 40 (107)
-.|++||+.+++.+..
T Consensus 4 ~~mmKkil~~l~a~~~ 19 (25)
T PF08139_consen 4 LSMMKKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3588999887665543
No 8
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed
Probab=31.07 E-value=99 Score=22.69 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=16.3
Q ss_pred eeecchhhhhhhHHHHHHHHHHHHHHHHH
Q psy12663 12 MQFNQQFYLIDNLDRMLRLILLSLSSLVL 40 (107)
Q Consensus 12 ~~~~~~~~~~~~~~~~~r~i~~~~~~~vl 40 (107)
|+|+.+ ++.+++++++..+...+.++++
T Consensus 1 ~~~~~~-~~~~~~~~l~~~~~~Tl~~~~~ 28 (219)
T PRK09494 1 MQFDWS-AIWPAIPLLLEGAKMTLWISVL 28 (219)
T ss_pred CCCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345433 4677788887766655544333
No 9
>PRK15107 glutamate/aspartate transport system permease GltK; Provisional
Probab=30.50 E-value=1e+02 Score=22.35 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=15.5
Q ss_pred eeecchhhhhhhHHHHHHHHHHHHHH
Q psy12663 12 MQFNQQFYLIDNLDRMLRLILLSLSS 37 (107)
Q Consensus 12 ~~~~~~~~~~~~~~~~~r~i~~~~~~ 37 (107)
||+|-+ ++.+|+++.|+.+...+..
T Consensus 2 ~~~~~~-~~~~~~~~~~~~l~~Tl~~ 26 (224)
T PRK15107 2 YEFDWS-SIVPSLPYLLDGLVITLKI 26 (224)
T ss_pred CCccHH-HHHHHHHHHHHHHHHHHHH
Confidence 345433 6778888888766554444
No 10
>PRK14710 hypothetical protein; Provisional
Probab=30.23 E-value=87 Score=22.34 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12663 22 DNLDRMLRLILLSLSSLVLAIVLFSSTS 49 (107)
Q Consensus 22 ~~~~~~~r~i~~~~~~~vl~~~~~i~~~ 49 (107)
.|+.+|.--|+...+++++..+.++...
T Consensus 6 sn~skm~ififaiii~v~lcv~tylyl~ 33 (86)
T PRK14710 6 SNLSKMIIFIFAIIIIVVLCVITYLYLY 33 (86)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhheeee
Confidence 5788887777766666666666665443
No 11
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=29.06 E-value=68 Score=24.42 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHH
Q psy12663 24 LDRMLRLILLSL 35 (107)
Q Consensus 24 ~~~~~r~i~~~~ 35 (107)
-|||.|+|.+..
T Consensus 58 s~RM~rRm~~~~ 69 (153)
T PF11947_consen 58 SNRMLRRMAVFV 69 (153)
T ss_pred HHHHHHHHHHHh
Confidence 589999997643
No 12
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=27.14 E-value=1.3e+02 Score=19.26 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy12663 21 IDNLDRMLRLILLSLSSLVLAIV 43 (107)
Q Consensus 21 ~~~~~~~~r~i~~~~~~~vl~~~ 43 (107)
-+|+.-.||.+.-+.+.+++.++
T Consensus 47 ~~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 47 KSNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667766555555554443
No 13
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=26.81 E-value=76 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy12663 26 RMLRLILLSLSSLVLAIVLFS 46 (107)
Q Consensus 26 ~~~r~i~~~~~~~vl~~~~~i 46 (107)
||+||.+...+++++.+..+.
T Consensus 48 ~l~rk~~~TTiiaavi~~~~~ 68 (85)
T PF07330_consen 48 RLKRKALITTIIAAVIFAIIY 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 788998888888777776654
No 14
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=26.04 E-value=1.2e+02 Score=19.97 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy12663 22 DNLDRMLRLILLSLSSLVL 40 (107)
Q Consensus 22 ~~~~~~~r~i~~~~~~~vl 40 (107)
|..||++-...+.++++++
T Consensus 66 ~~~D~~li~~~~~~f~~~v 84 (92)
T PF03908_consen 66 DKTDRILIFFAFLFFLLVV 84 (92)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 4445544333333333333
No 15
>PHA02898 virion envelope protein; Provisional
Probab=25.48 E-value=1e+02 Score=22.31 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHhhcccccc
Q psy12663 25 DRMLRLILLSLSS----LVLAIVLFSSTSKGCN 53 (107)
Q Consensus 25 ~~~~r~i~~~~~~----~vl~~~~~i~~~~~CN 53 (107)
|..||.+.++.++ +.++++++.....-|.
T Consensus 41 ~~~wRalSii~FIlgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 41 DSALRSISIISFILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 8999999877665 3334444444444454
No 16
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=23.04 E-value=87 Score=23.82 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchh
Q psy12663 27 MLRLILLSLSSLVLAIVLFSSTSKGCNEA 55 (107)
Q Consensus 27 ~~r~i~~~~~~~vl~~~~~i~~~~~CNEa 55 (107)
||.+.+..+.++++.|+++.....+|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (205)
T PRK06231 3 LWKTRVFKLLLLSFSFLIISLFLVSCTEN 31 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 56666666666666666666666677654
No 17
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=22.38 E-value=1.2e+02 Score=19.51 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy12663 28 LRLILLSLSS 37 (107)
Q Consensus 28 ~r~i~~~~~~ 37 (107)
.+|+++++++
T Consensus 5 ~~KL~~~f~~ 14 (181)
T PF12729_consen 5 RTKLILGFGL 14 (181)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 18
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=20.98 E-value=1.6e+02 Score=22.46 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=3.8
Q ss_pred ccchhhhh
Q psy12663 51 GCNEAVCA 58 (107)
Q Consensus 51 ~CNEavCa 58 (107)
+=.+..|+
T Consensus 42 T~~~~fC~ 49 (185)
T TIGR02161 42 TNTEEFCI 49 (185)
T ss_pred hCCcchHH
Confidence 44445554
No 19
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=20.75 E-value=1.2e+02 Score=21.10 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12663 26 RMLRLILLSLSSLVLAI 42 (107)
Q Consensus 26 ~~~r~i~~~~~~~vl~~ 42 (107)
+.|+++..+.+++++.+
T Consensus 3 ~~~~~~~~~ii~~~l~~ 19 (103)
T PRK14125 3 LKESKIHVSIFFVLTAL 19 (103)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45666655555544443
No 20
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=20.26 E-value=2.2e+02 Score=23.10 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=21.4
Q ss_pred hhhheeecchhhhh-hhHHHHHHHHHHHHHHHHH
Q psy12663 8 TISYMQFNQQFYLI-DNLDRMLRLILLSLSSLVL 40 (107)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~r~i~~~~~~~vl 40 (107)
.+.|++||..+.++ +-|.|+++.++..+++.++
T Consensus 311 ll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i 344 (425)
T PF08016_consen 311 LLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLI 344 (425)
T ss_pred HhhheeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999998865 4566666666554444333
Done!