Query psy12663
Match_columns 107
No_of_seqs 46 out of 48
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 16:20:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dmu_A BGLI restriction endonu 36.4 29 0.00099 28.2 3.4 31 1-33 1-33 (299)
2 1t2y_A Metallothionein, MT; pr 31.5 19 0.00064 20.1 1.1 12 67-79 8-19 (26)
3 3s8f_B Cytochrome C oxidase su 22.7 1.3E+02 0.0043 21.6 4.5 30 20-49 10-39 (168)
4 3o0r_C Nitric oxide reductase 21.2 1.1E+02 0.0038 19.4 3.6 9 26-34 8-16 (146)
5 1co7_I BPTI, bovine pancreatic 16.0 31 0.0011 22.6 0.0 21 26-46 1-21 (99)
6 3bx4_B Aggretin beta chain; to 13.8 42 0.0014 21.0 0.2 14 27-40 1-14 (146)
7 1v54_G Cytochrome C oxidase po 13.8 1.5E+02 0.0051 19.7 2.9 17 26-42 14-30 (85)
8 4gyw_A UDP-N-acetylglucosamine 10.3 1.1E+02 0.0036 25.7 1.6 27 8-34 523-549 (723)
9 1qjl_A Metallothionein; metal- 10.1 1E+02 0.0034 17.1 0.9 12 68-79 17-28 (28)
10 3tlw_A GLR4197 protein, GLIC; 9.8 3.1E+02 0.011 20.0 3.8 40 7-46 278-317 (321)
No 1
>1dmu_A BGLI restriction endonuclease; protein-DNA complex, active site calcium IONS, alpha/beta structure, A:A mismatch, hydrolase/DNA complex; HET: DNA; 2.20A {Bacillus subtilis} SCOP: c.52.1.4
Probab=36.43 E-value=29 Score=28.22 Aligned_cols=31 Identities=39% Similarity=0.389 Sum_probs=21.4
Q ss_pred Ccchhhhhh--hheeecchhhhhhhHHHHHHHHHH
Q psy12663 1 MTNQYRATI--SYMQFNQQFYLIDNLDRMLRLILL 33 (107)
Q Consensus 1 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~i~~ 33 (107)
|-||+|..| ||||- .-||+||+|.....=.-
T Consensus 1 m~n~~r~~~~~sY~~~--r~yl~~N~~~li~~E~y 33 (299)
T 1dmu_A 1 MYNLHREKIFMSYNQN--KQYLEDNPEIQEKIELY 33 (299)
T ss_dssp CTTTTHHHHHHHHHHH--HHHHHHCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH--HHHHHhCHHHHHHHHHH
Confidence 789999865 55553 35899999976554333
No 2
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=31.53 E-value=19 Score=20.11 Aligned_cols=12 Identities=42% Similarity=1.439 Sum_probs=8.2
Q ss_pred hccccCcCCCCCc
Q psy12663 67 TQSCKCDMKNCTC 79 (107)
Q Consensus 67 ~qsC~C~~~nCsC 79 (107)
+++|+|. .||+|
T Consensus 8 tgtC~Cg-~~CsC 19 (26)
T 1t2y_A 8 ASSCNCG-SGCSC 19 (26)
T ss_dssp TTTCCCS-SSCCS
T ss_pred CccccCC-CCccc
Confidence 6788884 44765
No 3
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=22.72 E-value=1.3e+02 Score=21.56 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12663 20 LIDNLDRMLRLILLSLSSLVLAIVLFSSTS 49 (107)
Q Consensus 20 ~~~~~~~~~r~i~~~~~~~vl~~~~~i~~~ 49 (107)
.|+...|.|-.+.++.+++.++++.+....
T Consensus 10 ~~~~~e~~w~~~~~~~~~~f~~~~~~~~~~ 39 (168)
T 3s8f_B 10 AILAYEKGWLAFSLAMLFVFIALIAYTLAT 39 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 467778888777766666655555554433
No 4
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=21.19 E-value=1.1e+02 Score=19.37 Aligned_cols=9 Identities=33% Similarity=0.379 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q psy12663 26 RMLRLILLS 34 (107)
Q Consensus 26 ~~~r~i~~~ 34 (107)
+|.|++++.
T Consensus 8 ~~~~~~~~~ 16 (146)
T 3o0r_C 8 GMARNIYFG 16 (146)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555443
No 5
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=16.04 E-value=31 Score=22.55 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy12663 26 RMLRLILLSLSSLVLAIVLFS 46 (107)
Q Consensus 26 ~~~r~i~~~~~~~vl~~~~~i 46 (107)
+|.|..++.+++++++++...
T Consensus 1 ~m~~~~ls~~lllll~~l~~~ 21 (99)
T 1co7_I 1 KMSRLCLSVALLVLLGTLAAS 21 (99)
T ss_dssp ---------------------
T ss_pred CcchHHHHHHHHHHHHHHHHh
Confidence 366665655555555544443
No 6
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=13.85 E-value=42 Score=21.01 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q psy12663 27 MLRLILLSLSSLVL 40 (107)
Q Consensus 27 ~~r~i~~~~~~~vl 40 (107)
|.|.|++.++++++
T Consensus 1 M~~~~~~~~~ll~~ 14 (146)
T 3bx4_B 1 MGRFIFVSFGLLVV 14 (146)
T ss_dssp --------------
T ss_pred CceeHHHHHHHHHH
Confidence 45555554444333
No 7
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=13.83 E-value=1.5e+02 Score=19.65 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12663 26 RMLRLILLSLSSLVLAI 42 (107)
Q Consensus 26 ~~~r~i~~~~~~~vl~~ 42 (107)
++||+|....++-.+++
T Consensus 14 ~~Wkkis~~va~P~v~l 30 (85)
T 1v54_G 14 RTWRFLTFGLALPSVAL 30 (85)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999987665543333
No 8
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=10.30 E-value=1.1e+02 Score=25.66 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.7
Q ss_pred hhhheeecchhhhhhhHHHHHHHHHHH
Q psy12663 8 TISYMQFNQQFYLIDNLDRMLRLILLS 34 (107)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~r~i~~~ 34 (107)
.|-|--||+-+=+-+..+++|.+||..
T Consensus 523 ~v~f~~fN~~~Ki~p~~~~~W~~IL~~ 549 (723)
T 4gyw_A 523 AIVYCNFNQLYKIDPSTLQMWANILKR 549 (723)
T ss_dssp SEEEECCSCGGGCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCccccCCHHHHHHHHHHHHh
Confidence 367889999999999999999999874
No 9
>1qjl_A Metallothionein; metal-binding, detoxification, radical scavenger; NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1
Probab=10.08 E-value=1e+02 Score=17.10 Aligned_cols=12 Identities=42% Similarity=1.331 Sum_probs=6.7
Q ss_pred ccccCcCCCCCc
Q psy12663 68 QSCKCDMKNCTC 79 (107)
Q Consensus 68 qsC~C~~~nCsC 79 (107)
.+|+|++-||.|
T Consensus 17 s~C~C~~C~C~~ 28 (28)
T 1qjl_A 17 SGCSCTEGNCAC 28 (28)
T ss_dssp SCCCCBTTBCCC
T ss_pred CCcccCCccccC
Confidence 456665555543
No 10
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=9.77 E-value=3.1e+02 Score=20.00 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhhhheeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy12663 7 ATISYMQFNQQFYLIDNLDRMLRLILLSLSSLVLAIVLFS 46 (107)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~vl~~~~~i 46 (107)
+.+.|+...+.--....++|..|+++-+.+++.+.+..+.
T Consensus 278 v~v~~l~~~~~~~~a~~~p~w~r~~fp~~f~~~~~i~~~~ 317 (321)
T 3tlw_A 278 TVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFL 317 (321)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhcCCccccccccChhheeeehHHHHHHHHHHHhh
Done!