Query psy12663
Match_columns 107
No_of_seqs 46 out of 48
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 16:20:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12663.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12663hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 33.9 20 0.0015 20.5 3.3 19 28-46 4-22 (158)
2 d1oede_ f.36.1.1 (E:) Acetylch 28.7 32 0.0023 22.5 3.9 16 23-38 228-243 (260)
3 d1v54g_ f.23.2.1 (G:) Mitochon 26.2 25 0.0019 21.9 2.9 18 25-42 13-30 (84)
4 d1oedc_ f.36.1.1 (C:) Acetylch 15.8 86 0.0063 20.0 3.9 14 24-37 229-242 (260)
5 d1oeda_ f.36.1.1 (A:) Acetylch 15.7 80 0.0058 20.2 3.8 15 23-37 195-209 (227)
6 d1dmua_ c.52.1.4 (A:) Restrict 15.2 62 0.0045 24.4 3.5 29 1-30 1-30 (299)
7 d1oedb_ f.36.1.1 (B:) Acetylch 10.7 1.4E+02 0.01 19.0 3.8 14 23-36 218-231 (250)
8 d1kyza1 a.4.5.29 (A:13-119) Ca 10.0 65 0.0048 20.1 1.8 12 21-32 62-73 (107)
9 d1azta1 a.66.1.1 (A:88-201) Tr 9.8 51 0.0037 20.5 1.2 12 18-29 89-100 (114)
10 d1fp1d1 a.4.5.29 (D:19-128) Ch 9.8 69 0.0051 20.2 1.9 12 21-32 64-75 (110)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=33.89 E-value=20 Score=20.50 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy12663 28 LRLILLSLSSLVLAIVLFS 46 (107)
Q Consensus 28 ~r~i~~~~~~~vl~~~~~i 46 (107)
+-++++++|++||+.+.+-
T Consensus 4 IELlVViaIIgILaaia~P 22 (158)
T d2pila_ 4 IELMIVIAIVGILAAVALP 22 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456677777776665543
No 2
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=28.74 E-value=32 Score=22.47 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHH
Q psy12663 23 NLDRMLRLILLSLSSL 38 (107)
Q Consensus 23 ~~~~~~r~i~~~~~~~ 38 (107)
-+||+.+.++.+.+++
T Consensus 228 viDR~~l~vF~~~~~i 243 (260)
T d1oede_ 228 VIDKACFWIALLLFSI 243 (260)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4899998877766554
No 3
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.25 E-value=25 Score=21.93 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12663 25 DRMLRLILLSLSSLVLAI 42 (107)
Q Consensus 25 ~~~~r~i~~~~~~~vl~~ 42 (107)
-++||+|....++-.+++
T Consensus 13 ~~lWkkis~~va~P~i~l 30 (84)
T d1v54g_ 13 ARTWRFLTFGLALPSVAL 30 (84)
T ss_dssp HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999988666544443
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=15.76 E-value=86 Score=19.97 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q psy12663 24 LDRMLRLILLSLSS 37 (107)
Q Consensus 24 ~~~~~r~i~~~~~~ 37 (107)
+||+.-.+++++++
T Consensus 229 iDRlfl~lF~i~~v 242 (260)
T d1oedc_ 229 IDRLSMFIITPVMV 242 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78877665555443
No 5
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=15.70 E-value=80 Score=20.18 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHH
Q psy12663 23 NLDRMLRLILLSLSS 37 (107)
Q Consensus 23 ~~~~~~r~i~~~~~~ 37 (107)
-+||+.+.++.++++
T Consensus 195 viDRi~~~~F~l~~i 209 (227)
T d1oeda_ 195 VIDHILLCVFMLICI 209 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 488988877666544
No 6
>d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus subtilis [TaxId: 1423]}
Probab=15.19 E-value=62 Score=24.35 Aligned_cols=29 Identities=38% Similarity=0.559 Sum_probs=20.7
Q ss_pred Ccchhhhhhhheeecc-hhhhhhhHHHHHHH
Q psy12663 1 MTNQYRATISYMQFNQ-QFYLIDNLDRMLRL 30 (107)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~ 30 (107)
|-||+|..| ||.+|| .-|++||-......
T Consensus 1 m~n~~r~~~-~~sy~~~~~y~~~n~~~~~~~ 30 (299)
T d1dmua_ 1 MYNLHREKI-FMSYNQNKQYLEDNPEIQEKI 30 (299)
T ss_dssp CTTTTHHHH-HHHHHHHHHHHHHCHHHHHHH
T ss_pred CchHHHHHH-HHhHHHHHHHHhhCHHHHHHH
Confidence 779999765 666666 35899998765443
No 7
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=10.71 E-value=1.4e+02 Score=18.99 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHH
Q psy12663 23 NLDRMLRLILLSLS 36 (107)
Q Consensus 23 ~~~~~~r~i~~~~~ 36 (107)
-+||+.-.++++++
T Consensus 218 VlDRlfl~lF~l~~ 231 (250)
T d1oedb_ 218 VADRLFLYVFFVIC 231 (250)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46776655544433
No 8
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=9.95 E-value=65 Score=20.09 Aligned_cols=12 Identities=58% Similarity=0.675 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHH
Q psy12663 21 IDNLDRMLRLIL 32 (107)
Q Consensus 21 ~~~~~~~~r~i~ 32 (107)
-+.||||+|.+.
T Consensus 62 ~~~L~RilR~La 73 (107)
T d1kyza1 62 PVMLDRMLRLLA 73 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 346999998654
No 9
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.81 E-value=51 Score=20.54 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=8.5
Q ss_pred hhhhhhHHHHHH
Q psy12663 18 FYLIDNLDRMLR 29 (107)
Q Consensus 18 ~~~~~~~~~~~r 29 (107)
-|..||+||+..
T Consensus 89 ~Yfl~~i~RI~~ 100 (114)
T d1azta1 89 QYFLDKIDVIKQ 100 (114)
T ss_dssp HHHHTTHHHHHS
T ss_pred HHHHHHHHHHcC
Confidence 466788888753
No 10
>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=9.78 E-value=69 Score=20.16 Aligned_cols=12 Identities=58% Similarity=0.886 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHH
Q psy12663 21 IDNLDRMLRLIL 32 (107)
Q Consensus 21 ~~~~~~~~r~i~ 32 (107)
...||||+|.+.
T Consensus 64 ~~~L~RiLRlLa 75 (110)
T d1fp1d1 64 PNRLDRMLRLLA 75 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346999998653
Done!