RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12663
(107 letters)
>gnl|CDD|148425 pfam06809, NPDC1, Neural proliferation differentiation control-1
protein (NPDC1). This family consists of several
neural proliferation differentiation control-1 (NPDC1)
proteins. NPDC1 plays a role in the control of neural
cell proliferation and differentiation. It has been
suggested that NPDC1 may be involved in the development
of several secretion glands. This family also contains
the C-terminal region of the C. elegans protein CAB-1
which is known to interact with AEX-3.
Length = 345
Score = 28.6 bits (63), Expect = 0.64
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 26 RMLRLILLSLSSLVLAIVLFSSTSKGCNEAVCASIVSKCMITQSCKCDMKNCTCCKDCL 84
R LRL+ L LS L+L L + + + A C + C + + KC C CL
Sbjct: 11 RHLRLLRLLLSGLILGAALNGAAAGHPDAAACPGSLD-CALKRRAKCP-PGAHACGPCL 67
>gnl|CDD|225241 COG2366, COG2366, Protein related to penicillin acylase [General
function prediction only].
Length = 768
Score = 28.6 bits (64), Expect = 0.67
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 27 MLRLILLSLSSLVLAIVLFSSTSKGCN 53
M R L + +L LA++L +S N
Sbjct: 1 MKRYARLFILALALAVLLLASLLGLLN 27
>gnl|CDD|227646 COG5341, COG5341, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 132
Score = 27.4 bits (61), Expect = 0.99
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 14 FNQQFYLIDNLDRMLRLILLSLSSLVLAIVLFSSTSKG 51
F +I LD ++ ++L+ LS L + + + KG
Sbjct: 1 MKTYFKMIKPLDFVIIVMLIILSFLPILLFSLAKAKKG 38
>gnl|CDD|219883 pfam08525, OapA_N, Opacity-associated protein A N-terminal motif.
This family includes the Haemophilus influenzae
opacity-associated protein. This protein is required
for efficient nasopharyngeal mucosal colonisation, and
its expression is associated with a distinctive
transparent colony phenotype. OapA is thought to be a
secreted protein, and its expression exhibits
high-frequency phase variation. This motif occurs at
the N-terminus of these proteins. It contains a
conserved histidine followed by a run of hydrophobic
residues.
Length = 30
Score = 25.1 bits (56), Expect = 1.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 20 LIDNLDRMLRLILLSLSSLVLAIVLFSS 47
L L ++ R +L++LS++VL ++L S
Sbjct: 2 LFKLLPKLHRRLLIALSAVVLVLLLLPS 29
>gnl|CDD|225287 COG2431, COG2431, Predicted membrane protein [Function unknown].
Length = 297
Score = 26.5 bits (59), Expect = 2.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 19 YLIDNLDRMLRLILLSLSSLVLAIVLFSSTSKGCNEAVCASIVSK 63
YLI ++ L+ + LS LV I+ G + AV ++VS
Sbjct: 16 YLIPLRNKYLKALNRLLSWLVYLILFT----MGISLAVLDNLVSN 56
>gnl|CDD|236800 PRK10935, PRK10935, nitrate/nitrite sensor protein NarQ;
Provisional.
Length = 565
Score = 26.7 bits (60), Expect = 2.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 27 MLRLILLSLSSLVLAIVLFSSTSKGCNEAVCAS 59
ML +ILLS + A++ +S S EA+ +
Sbjct: 15 MLLIILLSSLTTGFALLTLAS-SLRDAEAINIA 46
>gnl|CDD|222688 pfam14334, DUF4390, Domain of unknown function (DUF4390). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 192 and
203 amino acids in length.
Length = 165
Score = 26.1 bits (58), Expect = 3.2
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 2 TNQYRATISYMQFNQQFYLIDNLDRMLRLI 31
T +YR T +Q F LD LR +
Sbjct: 79 TRRYRVTDGGSGLSQSF---ATLDEALRAL 105
>gnl|CDD|220947 pfam11026, DUF2721, Protein of unknown function (DUF2721). This
family is conserved in bacteria. The function is not
known.
Length = 130
Score = 25.5 bits (57), Expect = 3.9
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 21 IDNLDRMLRLILLSLSSLVLAIVLFSSTS 49
+ NL R RLI ++ L+ +L
Sbjct: 52 LRNLRRRARLIRRAILLGTLSALLCVLVI 80
>gnl|CDD|198432 cd10034, UDG_like_2, Uncharacterized subfamily of Uracil-DNA
glycosylases. This is a subfamily of Uracil-DNA
glycosylase superfamily. Uracil-DNA glycosylases (UDG)
catalyze the removal of uracil from DNA to initiate DNA
base excision repair pathway. Uracil in DNA can arise
as a result of mis-incorporation of dUMP residues by
DNA polymerase or deamination of cytosine. Uracil
mispaired with guanine in DNA is one of the major
pro-mutagenic events, causing G:C->A:T mutations. UDG
is an essential enzyme for maintaining the integrity of
genetic information. This ubiquitously found enzyme
hydrolyzes the N-glycosidic bond of deoxyuridine in
DNA.
Length = 141
Score = 25.7 bits (57), Expect = 4.5
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 63 KCMITQSCKCDMKNCTCCKDCL-NCLSYLWTE 93
+ IT KC + + + NC YL +
Sbjct: 50 EVYITSLLKCRSPDREADDEEIKNCEPYLLAQ 81
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
Length = 1135
Score = 25.8 bits (57), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 9 ISYMQFNQQFYLIDNLDR 26
I Y+QF Q+F ID DR
Sbjct: 653 ICYVQFPQRFEGIDPSDR 670
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase.
Length = 586
Score = 25.6 bits (56), Expect = 7.0
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 29 RLILLSLSSLVLAIVLFSSTSKGCNEAVCASIVSK 63
RLI++ +S +VL ++ AV ++V K
Sbjct: 28 RLIIIVVSVVVLVAIIIG--------AVVGTVVHK 54
>gnl|CDD|185694 cd08024, GH16_CCF, Coelomic cytolytic factor, member of glycosyl
hydrolase family 16. Subgroup of glucanases of unknown
function that are related to beta-GRP (beta-1,3-glucan
recognition protein), but contain active site residues.
Beta-GRPs are one group of pattern recognition receptors
(PRRs), also referred to as biosensor proteins, that
complexes with pathogen-associated beta-1,3-glucans and
then transduces signals necessary for activation of an
appropriate innate immune response. Beta-GRPs are
present in insects and lack all catalytic residues. This
subgroup contains related proteins that still contain
the active site and are widely distributed in
eukaryotes. Their structures adopt a jelly roll fold
with a deep active site channel harboring the catalytic
residues, like those of other glycosyl hydrolase family
16 members.
Length = 330
Score = 25.3 bits (56), Expect = 7.1
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 14 FNQQFYLIDNL 24
F+Q+FYLI N+
Sbjct: 262 FDQEFYLILNV 272
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.131 0.435
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,614,740
Number of extensions: 336772
Number of successful extensions: 681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 46
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.2 bits)