RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12663
(107 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.39
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 1 MTNQYRATISYMQFNQQFYLIDNLDRM-----LRLILLSLSSLVLAIVLFSSTSKGCNEA 55
MT Y + + Q + N+ R+ LR LL L +++ G +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGV--LGSGKT 164
Query: 56 VCASIVSKCMITQSCKCD------MKNCTCCKDCLNCLSYLWT 92
A V Q +KNC + L L L
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Score = 26.0 bits (56), Expect = 3.0
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 27/86 (31%)
Query: 17 QFYLIDNLDRMLRLILLSLSSL----------VLAI-------------VLFSSTSKGCN 53
+ N D++ +I SL+ L L++ +++ K
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 54 EAVCASIVSKCMITQSCKCDMKNCTC 79
V + ++ + K T
Sbjct: 405 MVVVNKLHKYSLV----EKQPKESTI 426
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein,
transmembrane; HET: NAG; 2.40A {Saccharomyces
cerevisiae} SCOP: c.69.1.5
Length = 483
Score = 28.1 bits (63), Expect = 0.48
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 44 LFSSTSKGCNEAVCASIVSKCM-ITQSCKCDMKNCTCCKDCLNCLSYLWTECCSCVA 99
L ++ A C + S D ++C N L+ L +
Sbjct: 233 LIDESNPNFKHLTNA--HENCQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQ 287
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl
MAD, two-component systems, transferase; HET: ADP; 1.9A
{Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB:
3dge_A*
Length = 258
Score = 26.7 bits (60), Expect = 1.3
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 2/19 (10%)
Query: 22 DNLDRMLRLI--LLSLSSL 38
D + + L+ LL S L
Sbjct: 66 DQSNHLENLLNELLDFSRL 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: DNA; 2.00A
{Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Length = 305
Score = 26.6 bits (59), Expect = 1.6
Identities = 3/35 (8%), Positives = 8/35 (22%), Gaps = 3/35 (8%)
Query: 57 CASIVSK---CMITQSCKCDMKNCTCCKDCLNCLS 88
I+ K I + + + +
Sbjct: 9 LKRIIEKSEGISILINGEDLSYPREVSLELPEYVE 43
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex
(transcription factor/DNA), transcription/DNA complex;
HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3
PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B*
3gut_B 2o61_B
Length = 325
Score = 26.3 bits (57), Expect = 2.4
Identities = 7/43 (16%), Positives = 9/43 (20%)
Query: 45 FSSTSKGCNEAVCASIVSKCMITQSCKCDMKNCTCCKDCLNCL 87
S K C + VC + K L
Sbjct: 71 HSLVGKHCEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETL 113
>3cw3_A Absent in melanoma 1 protein; beta gamma-crystallin, greek KEY,
tryptophan corner;, lectin oncoprotein; 1.88A {Homo
sapiens}
Length = 96
Score = 25.4 bits (56), Expect = 2.6
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 75 KNCTCCKDCLNCLSYLWTECCSC 97
K D +C S+ +
Sbjct: 14 KCIEVFSDIQDCSSWSLSPVILI 36
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding,
carbohydrate-binding, sugar-binding, sugar binding
protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades}
PDB: 2iho_A*
Length = 293
Score = 25.8 bits (56), Expect = 3.6
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 4 QYRATISYMQFNQQFYLIDNLDRMLRLILLSLSSLVLAIVLFSSTSKGCN 53
++ T +Q + + + D I S + ++ +S G
Sbjct: 86 GWQGTAFTTNPHQLWTIKKSSDGTSYKIQNYGSKTFVD-LVNGDSSDGAK 134
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 25.5 bits (56), Expect = 3.8
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 64 CMITQSCKCDMKNCTCCKDCLNCLSYLWTEC---CSC 97
C + C +DCLN L EC C
Sbjct: 68 CTPLSKDERAQGEIACGEDCLN--RLLMIECSSRCPN 102
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding,
transcription regulation, activator, nuclear protein,
phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo
sapiens} SCOP: b.1.18.1 b.2.5.3
Length = 365
Score = 25.2 bits (54), Expect = 5.5
Identities = 6/43 (13%), Positives = 9/43 (20%)
Query: 45 FSSTSKGCNEAVCASIVSKCMITQSCKCDMKNCTCCKDCLNCL 87
S K C + +C + K L
Sbjct: 111 HSLVGKHCEDGICTVTAGPKDMVVGFANLGILHVTKKKVFETL 153
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 25.0 bits (55), Expect = 6.3
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 69 SCK--CDMKNCTCCKDCLNCLSYLWTEC----CSC 97
+CK D C DCLN ++ EC C C
Sbjct: 26 NCKKPDDDTRKGCVDDCLN--RMIFAECSPNTCPC 58
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Length = 437
Score = 24.7 bits (54), Expect = 7.3
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 56 VCASIVSKCMI--TQSCKCDMKNCTCCKDCLN 85
V + CM + + D KNCT C C+N
Sbjct: 280 VVGLCPTGCMTYESGTLSIDNKNCTRCMHCIN 311
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.131 0.435
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,447,906
Number of extensions: 73492
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 164
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.8 bits)