RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12663
         (107 letters)



>d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus
          subtilis [TaxId: 1423]}
          Length = 299

 Score = 28.8 bits (64), Expect = 0.11
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 1  MTNQYRATISYMQFNQ-QFYLIDNLDRMLRLILLSLSSLVLAI 42
          M N +R  I +M +NQ + YL DN +   ++ L  L+ L   I
Sbjct: 1  MYNLHREKI-FMSYNQNKQYLEDNPEIQEKIELYGLNLLNEVI 42


>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 155

 Score = 24.5 bits (52), Expect = 3.1
 Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 1/84 (1%)

Query: 16 QQFYLIDNLDRMLRLILLSLSSLVLAIVLFSSTSKGCNEAVCASIVSKCMITQSCKCDMK 75
          Q +  ++  +R   L  L  +     +V F  T +   E                    +
Sbjct: 6  QSYVEVNENERFEALCRLLKNKEFYGLV-FCKTKRDTKELASMLRDIGFKAGAIHGDLSQ 64

Query: 76 NCTCCKDCLNCLSYLWTECCSCVA 99
          +       L     +     + V 
Sbjct: 65 SQREKVIRLFKQKKIRILIATDVM 88


>d1k1sa1 d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon
           Sulfolobus solfataricus [TaxId: 2287]}
          Length = 105

 Score = 23.5 bits (50), Expect = 5.8
 Identities = 5/40 (12%), Positives = 15/40 (37%)

Query: 1   MTNQYRATISYMQFNQQFYLIDNLDRMLRLILLSLSSLVL 40
                       +   +  L+ +  R +R I + L ++++
Sbjct: 65  HGISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIII 104


>d1agia_ d.5.1.1 (A:) Angiogenin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 125

 Score = 23.2 bits (50), Expect = 5.9
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 16/56 (28%)

Query: 47 STSKGCNEAVCASIVSKCMITQSCK----------------CDMKNCTCCKDCLNC 86
          +  KG N+  C +++    +T+ CK                C+ +N    +  L  
Sbjct: 17 AKPKGRNDEYCFNMMKNRRLTRPCKDRNTFIHGNKNDIKAICEDRNGQPYRGDLRI 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.131    0.435 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,552
Number of extensions: 16678
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 94
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.2 bits)