BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12666
         (347 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
 pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
 pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
 pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
          Length = 117

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 46/50 (92%), Gaps = 1/50 (2%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPD-AKAGKSARRRATSME 149
           ++NSIRHNLSLHSKF+RVQNEGTGKSSWWMLNP+  K+GKS RRRA SM+
Sbjct: 60  WKNSIRHNLSLHSKFIRVQNEGTGKSSWWMLNPEGGKSGKSPRRRAASMD 109


>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
 pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
          Length = 97

 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 44/48 (91%), Gaps = 1/48 (2%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPD-AKAGKSARRRATS 147
           ++NSIRHNLSLHS+FMRVQNEGTGKSSWW++NPD  K+GK+ RRRA S
Sbjct: 50  WKNSIRHNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRAVS 97


>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
           Forkhead Transcription Factor Afx (Foxo4)
          Length = 150

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 46/52 (88%), Gaps = 1/52 (1%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPD-AKAGKSARRRATSMETS 151
           ++NSIRHNLSLHSKF++V NE TGKSSWWMLNP+  K+GK+ RRRA SM++S
Sbjct: 89  WKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEGGKSGKAPRRRAASMDSS 140


>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
          Length = 103

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 43/46 (93%), Gaps = 1/46 (2%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPD-AKAGKSARRRA 145
           ++NSIRHNLSLHS+FMRVQNEGTGKSSWW++NPD  K+GK+ RRRA
Sbjct: 58  WKNSIRHNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRA 103


>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
          Length = 100

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 39/41 (95%), Gaps = 1/41 (2%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPD-AKAGKS 140
           ++NSIRHNLSLHSKF+RVQNEGTGKSSWWMLNP+  K+GKS
Sbjct: 60  WKNSIRHNLSLHSKFIRVQNEGTGKSSWWMLNPEGGKSGKS 100


>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
           To Dna
          Length = 110

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 35/40 (87%), Gaps = 2/40 (5%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKS 140
           ++NSIRHNLSLHSKF++V NE TGKSSWWMLNP+   GKS
Sbjct: 73  WKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPE--GGKS 110


>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
           Adipocyte- Transcription Factor Freac-11 (S12)
          Length = 94

 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 2/37 (5%)

Query: 101 YQNSIRHNLSLHSKFMRV--QNEGTGKSSWWMLNPDA 135
           +QNSIRHNLSL+  F++V   ++  GK S+W L+PD+
Sbjct: 48  WQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDS 84


>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
          Length = 100

 Score = 40.4 bits (93), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 6/50 (12%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGT---GKSSWWMLNPDAK---AGKSARRR 144
           ++NS+RHNLSL+  F++V  + +   GK ++WMLNP+++   A    RRR
Sbjct: 46  WRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRR 95


>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
 pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
          Length = 142

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDA 135
           ++NSIRHNLSLH  F+R +    GK S+W ++P A
Sbjct: 63  WKNSIRHNLSLHDMFVR-ETSANGKVSFWTIHPSA 96


>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
           Myocyte Nuclear Factor
 pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
           Of Myocyte Nuclear Factor
          Length = 101

 Score = 39.7 bits (91), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 3/46 (6%)

Query: 95  FRPANH-YQNSIRHNLSLHSKFMRV--QNEGTGKSSWWMLNPDAKA 137
           +R A+  +QNSIRHNLSL+  F++V    E  GK S+W ++P ++A
Sbjct: 40  YRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASEA 85


>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
           Interleukin Enhancer Binding Factor
          Length = 98

 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%)

Query: 95  FRPANH-YQNSIRHNLSLHSKFMRV--QNEGTGKSSWWMLNPDAKA 137
           +R A+  +QNSIRHNLSL+  F++V    E  GK S+W ++P +++
Sbjct: 40  YRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASES 85


>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
           Bound To Dna
 pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
           Bound To Dna
          Length = 111

 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%)

Query: 95  FRPANH-YQNSIRHNLSLHSKFMRV--QNEGTGKSSWWMLNPDAKA 137
           +R A+  +QNSIRHNLSL+  F++V    E  GK S+W ++P +++
Sbjct: 53  YRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASES 98


>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
          Length = 97

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 6/50 (12%)

Query: 101 YQNSIRHNLSLHSKFMRVQNE--GTGKSSWWMLNPDAKA----GKSARRR 144
           +QNSIRHNLSL+  F+++  E    GK ++W L+P ++     G   RRR
Sbjct: 46  WQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRR 95


>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
           Structures
          Length = 109

 Score = 37.7 bits (86), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 2/38 (5%)

Query: 101 YQNSIRHNLSLHSKFMRVQNE--GTGKSSWWMLNPDAK 136
           +QNSIRHNLSL+  F+++  E    GK ++W L+P ++
Sbjct: 47  WQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSE 84


>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
 pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
 pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
 pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
 pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
 pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
 pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
           Bound Specifically To Dna.
 pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
           Bound Specifically To Dna
          Length = 93

 Score = 35.4 bits (80), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 96  RPANHYQNSIRHNLSLHSKFMRVQN 120
           R A  ++N++RHNLSLH  F+RV+N
Sbjct: 42  RNAATWKNAVRHNLSLHKCFVRVEN 66


>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
           Dna-Binding Domain Of Foxp1: Insight Into Its Domain
           Swapping
          Length = 87

 Score = 35.0 bits (79), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 96  RPANHYQNSIRHNLSLHSKFMRVQN 120
           R A  ++N++RHNLSLH  F+RV+N
Sbjct: 43  RNAATWKNAVRHNLSLHKYFVRVEN 67


>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
 pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
 pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
 pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
          Length = 82

 Score = 34.3 bits (77), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 3/32 (9%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLN 132
           ++N+IRHNLSLH  F+RV++E   K + W ++
Sbjct: 46  WKNAIRHNLSLHKCFVRVESE---KGAVWTVD 74


>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
           Motif Resembles Histone H5
          Length = 102

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 101 YQNSIRHNLSLHSKFMRVQN--EGTGKSSWWMLNPDA 135
           +QNSIRH+LS +  F++V    +  GK S+W L+P +
Sbjct: 47  WQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSS 83


>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
           Helicobacter Pylori Complexed With L-Lysine
          Length = 425

 Score = 31.6 bits (70), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 63  CQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHN-------LSLHSKF 115
           C +V P  +SS  F K  H+ EL PG  + I+   A     + ++N       L+L    
Sbjct: 342 CDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALEDHK 401

Query: 116 MRVQNEGTGKSSWWMLNPDAKAG 138
           +RV  +       W L  +   G
Sbjct: 402 IRVIRKREALEDLWRLEEEGLKG 424


>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
           Mutant) From Helicobacter Pylori Complexed With L-Lysine
          Length = 425

 Score = 31.6 bits (70), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 63  CQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHN-------LSLHSKF 115
           C +V P  +SS  F K  H+ EL PG  + I+   A     + ++N       L+L    
Sbjct: 342 CDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALEDHK 401

Query: 116 MRVQNEGTGKSSWWMLNPDAKAG 138
           +RV  +       W L  +   G
Sbjct: 402 IRVIRKREALEDLWRLEEEGLKG 424


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,284,993
Number of Sequences: 62578
Number of extensions: 285745
Number of successful extensions: 378
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 21
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)