Query psy12666
Match_columns 347
No_of_seqs 257 out of 794
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 16:23:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 2.2E-35 7.6E-40 244.3 1.9 93 49-161 1-100 (102)
2 1kq8_A HFH-1, hepatocyte nucle 100.0 6.3E-35 2.1E-39 240.9 2.3 90 50-159 1-98 (100)
3 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 6.7E-35 2.3E-39 244.1 1.9 78 49-137 1-85 (109)
4 3coa_C Forkhead box protein O1 100.0 1.4E-34 4.9E-39 244.8 3.5 97 47-151 7-111 (117)
5 2hdc_A Protein (transcription 100.0 3.4E-35 1.2E-39 241.3 -0.6 77 50-137 1-84 (97)
6 1e17_A AFX; DNA binding domain 100.0 2E-34 6.9E-39 252.8 2.3 106 46-159 35-149 (150)
7 2c6y_A Forkhead box protein K2 100.0 1.3E-34 4.4E-39 243.1 0.6 81 46-137 11-98 (111)
8 3bpy_A FORK head domain, forkh 100.0 3.1E-32 1.1E-36 218.8 3.6 76 49-132 3-85 (85)
9 3l2c_A Forkhead box protein O4 100.0 5.2E-32 1.8E-36 226.8 3.7 82 47-136 20-108 (110)
10 2a07_F Forkhead box protein P2 100.0 5.9E-32 2E-36 220.7 -1.2 73 49-135 1-78 (93)
11 3g73_A Forkhead box protein M1 99.9 2.1E-29 7.2E-34 219.3 3.3 83 44-137 11-98 (142)
12 2jrw_A Cyclic extended PEP.1; 61.8 3.9 0.00013 25.7 1.7 19 248-266 2-22 (26)
13 4esj_A Type-2 restriction enzy 38.4 10 0.00035 35.8 1.3 49 55-111 190-239 (257)
14 3fme_A Dual specificity mitoge 29.1 8.6 0.00029 33.2 -0.8 48 54-109 241-288 (290)
15 1phk_A Phosphorylase kinase; g 20.1 25 0.00085 30.4 0.4 31 55-93 259-289 (298)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=2.2e-35 Score=244.35 Aligned_cols=93 Identities=28% Similarity=0.462 Sum_probs=82.1
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--
Q psy12666 49 FENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE-- 121 (347)
Q Consensus 49 ~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~-- 121 (347)
+.||||||++||++||+++|+ ++|||+|||+| |||+. +..|||||||||||||+||+||++.
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~--------~~LtL~eIY~~I~~~fpyyr~---~~~gWqNSIRHNLSln~~F~kv~r~~~ 69 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPG--------KMLTLSEIYQWIMDLFPYYRE---NQQRWQNSIRHSLSFNDCFVKVARSPD 69 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTT--------SCBCHHHHHHHHHHHCGGGGS---CHHHHHHHHHHHHHHCTTEEEECCCSC
T ss_pred CcCcCCCHHHHHHHHHHhCCC--------CCCcHHHHHHHHHHcCCcccc---CCCchhhhhhhhhhhccceEecCCCCC
Confidence 479999999999999999999 99999999999 99998 7899999999999999999999985
Q ss_pred CCCccceeEeCCCccccchhhhhcccccchhhhhhhhhhh
Q psy12666 122 GTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGRVK 161 (347)
Q Consensus 122 ~~GKG~~W~l~p~~~~gk~~RRR~~s~~~~k~~Krr~R~k 161 (347)
+.|||+||+|+++++. +++++.++|||+|++
T Consensus 70 ~~GKG~~W~l~p~~~~---------~f~~g~~~rr~~~~~ 100 (102)
T 1vtn_C 70 KPGKGSYWALHPSSGN---------MFENGCYLRRQKRFK 100 (102)
T ss_dssp SSCSSCEEEECGGGCS---------TTCSSCSSSCSSCCC
T ss_pred CCCCcceEEECcCHHH---------HhhcCCeeccccccc
Confidence 6799999999999864 556666666665543
No 2
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=6.3e-35 Score=240.90 Aligned_cols=90 Identities=28% Similarity=0.440 Sum_probs=64.1
Q ss_pred CCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--C
Q psy12666 50 ENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE--G 122 (347)
Q Consensus 50 ~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~--~ 122 (347)
.||||||++||++||+++|+ ++|||+|||+| |||+. +.+|||||||||||||+||+||+++ .
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~--------~~ltL~eIY~~i~~~fpyyr~---~~~gWqNSIRHNLSln~~F~kv~r~~~~ 69 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAG--------GRLTLAEINEYLMGKFPFFRG---SYTGWRNSVRHNLSLNDCFVKVLRDPSR 69 (100)
T ss_dssp ------CHHHHHHHHTTSSS--------SCBCHHHHHHHHHHHCTTGGG---TCSCCHHHHHHHHHHHTCCEECSSCSCC
T ss_pred CcCCCCHHHHHHHHHHhCCC--------CCCcHHHHHHHHHHhCccccC---CCCceecccchheehhheeeecCCCCCC
Confidence 49999999999999999999 99999999999 99998 8899999999999999999999986 2
Q ss_pred -CCccceeEeCCCccccchhhhhcccccchhhhhhhhh
Q psy12666 123 -TGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGR 159 (347)
Q Consensus 123 -~GKG~~W~l~p~~~~gk~~RRR~~s~~~~k~~Krr~R 159 (347)
.|||+||+|+|+++. +++++.++|||+|
T Consensus 70 p~gkg~~W~l~p~~~~---------~f~~g~~~rrr~r 98 (100)
T 1kq8_A 70 PWGKDNYWMLNPNSEY---------TFADGVFRRRRYR 98 (100)
T ss_dssp SSSCCCCEECCC--------------------------
T ss_pred CCCCCeEEEECcCHHH---------HHhCCCcccCCCC
Confidence 499999999999875 5666777666665
No 3
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=6.7e-35 Score=244.14 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=73.6
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--
Q psy12666 49 FENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE-- 121 (347)
Q Consensus 49 ~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~-- 121 (347)
..||||||++||++||+++|+ ++|||+|||+| |||+. +.+|||||||||||||+||+||+++
T Consensus 1 ~~KPp~SYa~LI~~AI~~sp~--------~~LtL~eIY~~I~~~fPyyr~---~~~gWqNSIRHNLSln~~F~Kv~r~~~ 69 (109)
T 2hfh_A 1 MVKPPYSYIALITMAILQSPQ--------KKLTLSGICEFISNRFPYYRE---KFPAWQNSIRHNLSLNDCFVKIPREPG 69 (109)
T ss_dssp CCCCCCCHHHHHHHHHHTCSS--------SCBCHHHHHHHHHTTCHHHHT---TCGGGHHHHHHHHHHHTCCBCCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHhCCC--------CCCcHHHHHHHHHHhcchhcc---CCcccchhhhhhhhhhhhhhcCCCCCC
Confidence 369999999999999999999 99999999999 99998 7899999999999999999999986
Q ss_pred CCCccceeEeCCCccc
Q psy12666 122 GTGKSSWWMLNPDAKA 137 (347)
Q Consensus 122 ~~GKG~~W~l~p~~~~ 137 (347)
..|||+||+|+++++.
T Consensus 70 ~~GKG~~W~l~p~~~~ 85 (109)
T 2hfh_A 70 NPGKGNYWTLDPQSED 85 (109)
T ss_dssp SCSSCCCBBCCTTCCH
T ss_pred CCCCceeEEECccHHH
Confidence 5799999999999874
No 4
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=1.4e-34 Score=244.78 Aligned_cols=97 Identities=48% Similarity=0.723 Sum_probs=72.1
Q ss_pred CCCCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccC--CCCchhhhhhhhhcccccccccc
Q psy12666 47 DHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFR--PANHYQNSIRHNLSLHSKFMRVQ 119 (347)
Q Consensus 47 ~~~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~--~~~GWKNSIRHNLSLn~~F~Kv~ 119 (347)
....||||||++||++||+++|+ ++|||+|||+| |||+.+.. ..+|||||||||||||+||+||+
T Consensus 7 ~~n~kPp~SYa~LI~~AI~~sp~--------~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~ 78 (117)
T 3coa_C 7 RRNAWGNLSYADLITKAIESSAE--------KRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQ 78 (117)
T ss_dssp CCBTTBSCCHHHHHHHHHHTSTT--------SCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHhCCC--------CCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccc
Confidence 45679999999999999999999 99999999999 99998210 13799999999999999999999
Q ss_pred ccCCCccceeEeCCCc-cccchhhhhcccccch
Q psy12666 120 NEGTGKSSWWMLNPDA-KAGKSARRRATSMETS 151 (347)
Q Consensus 120 r~~~GKG~~W~l~p~~-~~gk~~RRR~~s~~~~ 151 (347)
+++.|||+||+|++++ +.++++|||+++++..
T Consensus 79 ~~~~GKg~~W~l~p~~~~~~~~~Rrr~~s~~~~ 111 (117)
T 3coa_C 79 NEGTGKSSWWMLNPEGGKSGKSPRRRAASMDNN 111 (117)
T ss_dssp CSSTTCCCEEEECC-------------------
T ss_pred cCCCCCcceEEECccccccCccccccCCCCCCc
Confidence 9999999999999996 5788888899988863
No 5
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=3.4e-35 Score=241.28 Aligned_cols=77 Identities=29% Similarity=0.488 Sum_probs=72.7
Q ss_pred CCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--C
Q psy12666 50 ENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE--G 122 (347)
Q Consensus 50 ~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~--~ 122 (347)
.||||||++||++||+++|+ ++|||+|||+| |||+. +.+|||||||||||||+||+||+++ .
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~--------~~ltL~eIY~~i~~~fpyyr~---~~~gWqNSIRHNLSln~~F~Kv~r~~~~ 69 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQ--------KKLTLSGICEFISNRFPYYRE---KFPAWQNSIRHNLSLNDCFVKIPREPGN 69 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTT--------TCBCHHHHHHHHHHHCHHHHH---HCSSHHHHHHHHHHHHHCCEEECSCTTC
T ss_pred CcCCCCHHHHHHHHHHhCCC--------CCCCHHHHHHHHHHhchhhcc---CCcceehhhhhhhhhhhheeecCCCCCC
Confidence 39999999999999999999 99999999999 99998 7889999999999999999999986 5
Q ss_pred CCccceeEeCCCccc
Q psy12666 123 TGKSSWWMLNPDAKA 137 (347)
Q Consensus 123 ~GKG~~W~l~p~~~~ 137 (347)
.|||+||+|+++++.
T Consensus 70 ~gKg~~W~l~p~~~~ 84 (97)
T 2hdc_A 70 PGKGNYWTLDPQSED 84 (97)
T ss_dssp SSSCCEEECCTTHHH
T ss_pred CCCcceEEECcCHHH
Confidence 799999999999863
No 6
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=2e-34 Score=252.85 Aligned_cols=106 Identities=43% Similarity=0.668 Sum_probs=74.7
Q ss_pred CCCCCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----ccccccc--CCCCchhhhhhhhhccccccccc
Q psy12666 46 VDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKF--RPANHYQNSIRHNLSLHSKFMRV 118 (347)
Q Consensus 46 ~~~~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~--~~~~GWKNSIRHNLSLn~~F~Kv 118 (347)
.....||||||++||++||+++|+ ++|||+|||+| |||+.+. ...+|||||||||||||+||+||
T Consensus 35 ~~rn~kPp~SYa~LI~~AI~sSp~--------k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv 106 (150)
T 1e17_A 35 SRRNAWGNQSYAELISQAIESAPE--------KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKV 106 (150)
T ss_dssp CCCCTTCSCCHHHHHHHHHHHSSS--------CCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCC--------CCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEec
Confidence 345679999999999999999999 99999999999 9999732 13579999999999999999999
Q ss_pred cccCCCccceeEeCCCc-cccchhhhhcccccch-hhhhhhhh
Q psy12666 119 QNEGTGKSSWWMLNPDA-KAGKSARRRATSMETS-KFEKRRGR 159 (347)
Q Consensus 119 ~r~~~GKG~~W~l~p~~-~~gk~~RRR~~s~~~~-k~~Krr~R 159 (347)
++++.|||+||+|++++ +.|+.+|||+++|+.. ++.|.|+|
T Consensus 107 ~r~~~GKG~~W~ldp~~~~~gk~~Rrr~~s~~~~~~l~~~~~~ 149 (150)
T 1e17_A 107 HNEATGKSSWWMLNPEGGKSGKAPRRRAASMDSSSKLLRGRSK 149 (150)
T ss_dssp CCTTTSSSCEEEECTTCC-------------------------
T ss_pred CCCCCCCcceEEECcccccCCccccccccccccccccchhccc
Confidence 99999999999999995 5788899999999874 57777765
No 7
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=99.98 E-value=1.3e-34 Score=243.07 Aligned_cols=81 Identities=28% Similarity=0.531 Sum_probs=74.0
Q ss_pred CCCCCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhccccccccccc
Q psy12666 46 VDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQN 120 (347)
Q Consensus 46 ~~~~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r 120 (347)
.+...||||||++||++||+++|+ ++|||+|||+| |||+. +.+|||||||||||||+||+||++
T Consensus 11 ~~~~~KPp~SYa~LI~~AI~~sp~--------~~LtL~eIY~~I~~~fPyyr~---~~~gWqNSIRHNLSln~~F~Kv~r 79 (111)
T 2c6y_A 11 RGSDSKPPYSYAQLIVQAITMAPD--------KQLTLNGIYTHITKNYPYYRT---ADKGWQNSIRHNLSLNRYFIKVPR 79 (111)
T ss_dssp ---CCCCSSCHHHHHHHHHHTSTT--------SCEEHHHHHHHHHHHCTTSCT---TCHHHHHHHHHHHHHSTTEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCC--------CCCcHHHHHHHHHHcCCcccc---CCCeeecchhHHhhhhhhhccccC
Confidence 456789999999999999999999 99999999999 99998 889999999999999999999998
Q ss_pred c--CCCccceeEeCCCccc
Q psy12666 121 E--GTGKSSWWMLNPDAKA 137 (347)
Q Consensus 121 ~--~~GKG~~W~l~p~~~~ 137 (347)
. +.|||+||+|+++++.
T Consensus 80 ~~~~~GKG~~W~l~p~~~~ 98 (111)
T 2c6y_A 80 SQEEPGKGSFWRIDPASES 98 (111)
T ss_dssp CTTSCCSSCEEEECHHHHH
T ss_pred CCCCCCCcceEEeChhHHH
Confidence 5 6899999999998764
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=99.97 E-value=3.1e-32 Score=218.79 Aligned_cols=76 Identities=43% Similarity=0.636 Sum_probs=70.1
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----ccccccc--CCCCchhhhhhhhhcccccccccccc
Q psy12666 49 FENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKF--RPANHYQNSIRHNLSLHSKFMRVQNE 121 (347)
Q Consensus 49 ~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~--~~~~GWKNSIRHNLSLn~~F~Kv~r~ 121 (347)
..||||||++||++||+++|+ ++|||+|||+| |||+.+. ...+|||||||||||||+||+||+++
T Consensus 3 n~kp~~SY~~LI~~Ai~~sp~--------~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~ 74 (85)
T 3bpy_A 3 NAWGNQSYAELISQAIESAPE--------KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE 74 (85)
T ss_dssp BTTBSCCHHHHHHHHHHHSTT--------SCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC
T ss_pred CCcCCCCHHHHHHHHHHhCCc--------CCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCC
Confidence 469999999999999999999 99999999999 9999842 12579999999999999999999999
Q ss_pred CCCccceeEeC
Q psy12666 122 GTGKSSWWMLN 132 (347)
Q Consensus 122 ~~GKG~~W~l~ 132 (347)
+.|||+||+||
T Consensus 75 ~~GKg~~W~ld 85 (85)
T 3bpy_A 75 ATGKSSWWMLN 85 (85)
T ss_dssp STTCCCEEEEC
T ss_pred CCCCCCceecC
Confidence 99999999996
No 9
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=99.97 E-value=5.2e-32 Score=226.84 Aligned_cols=82 Identities=41% Similarity=0.628 Sum_probs=71.9
Q ss_pred CCCCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccC--CCCchhhhhhhhhcccccccccc
Q psy12666 47 DHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFR--PANHYQNSIRHNLSLHSKFMRVQ 119 (347)
Q Consensus 47 ~~~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~--~~~GWKNSIRHNLSLn~~F~Kv~ 119 (347)
....||||||++||++||+++|+ ++|||+|||+| |||+.+.. ..+|||||||||||||+||+||+
T Consensus 20 ~~~~kPpySY~~LI~~AI~~sp~--------~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~ 91 (110)
T 3l2c_A 20 RRNAWGNQSYAELISQAIESAPE--------KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVH 91 (110)
T ss_dssp CCBTTBSCCHHHHHHHHHHHSTT--------SCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHhCCc--------cCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCC
Confidence 45689999999999999999999 99999999999 99998321 25799999999999999999999
Q ss_pred ccCCCccceeEeCCCcc
Q psy12666 120 NEGTGKSSWWMLNPDAK 136 (347)
Q Consensus 120 r~~~GKG~~W~l~p~~~ 136 (347)
+++.|||+||+|+|+++
T Consensus 92 r~~~GKG~~W~l~p~~~ 108 (110)
T 3l2c_A 92 NEATGKSSWWMLNPEGG 108 (110)
T ss_dssp CCSTTCCCEEEEC----
T ss_pred CCCCCCCceEEECcccc
Confidence 99999999999999975
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=99.96 E-value=5.9e-32 Score=220.71 Aligned_cols=73 Identities=26% Similarity=0.440 Sum_probs=68.1
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhccccccccccccCC
Q psy12666 49 FENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNEGT 123 (347)
Q Consensus 49 ~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~~~ 123 (347)
+.||||||++||++||+++|+ ++|||+|||+| |||+. +.+|||||||||||||+||+||++
T Consensus 1 ~~KPp~SY~~LI~~AI~~sp~--------~~ltL~eIY~~i~~~fpyyr~---~~~gWkNSIRHNLSln~~F~kv~~--- 66 (93)
T 2a07_F 1 IVRPPFTYATLIRQAIMESSD--------RQLTLNEIYSWFTRTFAYFRR---NAATWKNAVRHNLSLHKCFVRVEN--- 66 (93)
T ss_dssp -CCCSCCHHHHHHHHHHHSTT--------SCBCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCTTBCCEEC---
T ss_pred CCCCCCCHHHHHHHHHHhCCC--------CCccHHHHHHHHHHhCCcccc---CCCccccccceeeehhhceeecCC---
Confidence 369999999999999999999 99999999999 99998 788999999999999999999964
Q ss_pred CccceeEeCCCc
Q psy12666 124 GKSSWWMLNPDA 135 (347)
Q Consensus 124 GKG~~W~l~p~~ 135 (347)
|||+||+|+++.
T Consensus 67 gkG~~W~l~~~~ 78 (93)
T 2a07_F 67 VKGAVWTVDEVE 78 (93)
T ss_dssp SSSEECCBCHHH
T ss_pred CCCCeeEEChHH
Confidence 899999999754
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=99.95 E-value=2.1e-29 Score=219.35 Aligned_cols=83 Identities=28% Similarity=0.421 Sum_probs=73.6
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhccccccccc
Q psy12666 44 TQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRV 118 (347)
Q Consensus 44 ~~~~~~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv 118 (347)
.+....+||||||++||++||+++|+ ++|||+|||+| |||+.+ +..|||||||||||||+||+|+
T Consensus 11 ~~~~~~~KPpySYa~LI~~AI~~sp~--------~~LTL~eIY~~I~~~fPyyr~~--~~~gWqNSIRHNLSln~~F~r~ 80 (142)
T 3g73_A 11 WQNSVSERPPYSYMAMIQFAINSTER--------KRMTLKDIYTWIEDHFPYFKHI--AKPGWKNSIRHNLSLHDMFVRE 80 (142)
T ss_dssp ---CTTSCCSSCHHHHHHHHHHTSTT--------SEECHHHHHHHHHHHCTHHHHT--SCTTHHHHHHHHHHHCTTEEEE
T ss_pred CCccCCCCCCCCHHHHHHHHHHhCCC--------CCcCHHHHHHHHHHhCCCcccc--CCCCccchhhhhhhhhhhheec
Confidence 45677899999999999999999999 99999999999 999872 4679999999999999999998
Q ss_pred cccCCCccceeEeCCCccc
Q psy12666 119 QNEGTGKSSWWMLNPDAKA 137 (347)
Q Consensus 119 ~r~~~GKG~~W~l~p~~~~ 137 (347)
.. +.|||+||+|+++++.
T Consensus 81 ~~-~~GKg~~W~i~p~~~~ 98 (142)
T 3g73_A 81 TS-ANGKVSFWTIHPSANR 98 (142)
T ss_dssp EC-TTSCCEEEEECTTTCC
T ss_pred CC-CCCCCceEEECccccc
Confidence 54 6899999999999864
No 12
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=61.84 E-value=3.9 Score=25.72 Aligned_cols=19 Identities=42% Similarity=0.915 Sum_probs=13.9
Q ss_pred hhcccccCCCCC--CCCCCCC
Q psy12666 248 ETTMKLSSDNFL--PYPSPPP 266 (347)
Q Consensus 248 ~~~m~l~~~~~~--~~~~~p~ 266 (347)
|+.|+|-++.|. +|-||||
T Consensus 2 aepmtlpenyfserpyhpppp 22 (26)
T 2jrw_A 2 AEPMTLPENYFSERPYHPPPP 22 (26)
T ss_dssp CSCCCCSSSSCCSSSCCSCSC
T ss_pred CCccccchhhcccCCCCCCCC
Confidence 578999988877 5655554
No 13
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=38.41 E-value=10 Score=35.75 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-cccccccCCCCchhhhhhhhhcc
Q psy12666 55 FVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-PLLEIKFRPANHYQNSIRHNLSL 111 (347)
Q Consensus 55 SYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-PYfk~k~~~~~GWKNSIRHNLSL 111 (347)
.+...|..+|..-+. ...||+|||.| ++++.++.....=+..||..|=.
T Consensus 190 gWlldi~~cid~i~~--------~eFtL~diY~fe~~L~~~~P~N~~Ik~KIRQqLQ~ 239 (257)
T 4esj_A 190 GWTIEILNCIDKIEG--------SEFTLEDMYRFESDLKNIFVKNNHIKEKIRQQLQI 239 (257)
T ss_dssp HHHHHHHHHHHHSCS--------SEEEHHHHHTTHHHHHHHSTTCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCc--------ceeeHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 577788899988887 78999999998 88888887778889999999865
No 14
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=29.07 E-value=8.6 Score=33.18 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHhCCCCCCCCCCCCcccccccCCccccccccCCCCchhhhhhhhh
Q psy12666 54 FFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNL 109 (347)
Q Consensus 54 ySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~PYfk~k~~~~~GWKNSIRHNL 109 (347)
-....||..++.-.|. +|.|..||.+.|||+........+..-+++.|
T Consensus 241 ~~~~~li~~~l~~~p~--------~Rpt~~e~l~hp~f~~~~~~~~~~~~~~~~~l 288 (290)
T 3fme_A 241 AEFVDFTSQCLKKNSK--------ERPTYPELMQHPFFTLHESKGTDVASFVKLIL 288 (290)
T ss_dssp HHHHHHHHHHTCSSGG--------GSCCHHHHTTSHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcChh--------hCcCHHHHHhCcccccCcccccCHHHHHHHhh
Confidence 3478899999988888 99999999999999864333456665555544
No 15
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=20.08 E-value=25 Score=30.43 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCCCcccccccCCcccccc
Q psy12666 55 FVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEI 93 (347)
Q Consensus 55 SYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~PYfk~ 93 (347)
....||..++.-.|. +|.|..||.+.|||+.
T Consensus 259 ~l~~li~~~l~~dp~--------~Rps~~~ll~h~~~~~ 289 (298)
T 1phk_A 259 TVKDLVSRFLVVQPQ--------KRYTAEEALAHPFFQQ 289 (298)
T ss_dssp HHHHHHHHHCCSSGG--------GSCCHHHHTTSGGGCT
T ss_pred HHHHHHHHHccCCcc--------cCCCHHHHHhChHhhh
Confidence 477899999988888 9999999999999976
Done!