Query psy12666
Match_columns 347
No_of_seqs 257 out of 794
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 16:23:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12666.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12666hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c6ya1 a.4.5.14 (A:1-98) Inte 100.0 9.1E-34 6.6E-38 231.2 0.6 76 50-136 2-84 (98)
2 d2hdca_ a.4.5.14 (A:) Genesis 100.0 1.1E-33 7.9E-38 230.4 -0.6 76 50-136 1-83 (97)
3 d1d5va_ a.4.5.14 (A:) Adipocyt 100.0 3.6E-32 2.6E-36 220.3 3.8 78 49-137 2-86 (94)
4 d3bpya1 a.4.5.14 (A:93-177) Af 100.0 2.1E-30 1.5E-34 206.6 3.9 76 49-132 3-85 (85)
5 d2a07f1 a.4.5.14 (F:503-584) F 100.0 5.4E-31 3.9E-35 208.7 -1.3 72 50-135 1-77 (82)
6 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 99.9 2.2E-29 1.6E-33 196.5 2.3 67 56-133 1-75 (75)
7 d1hsta_ a.4.5.13 (A:) Histone 48.4 3 0.00022 30.0 1.3 27 55-88 4-30 (74)
8 d1ghca_ a.4.5.13 (A:) Histone 43.3 13 0.00095 26.6 4.2 27 55-88 5-31 (75)
9 d1usta_ a.4.5.13 (A:) Histone 28.8 4.5 0.00033 30.3 -0.5 26 55-87 8-33 (92)
10 d1ussa_ a.4.5.13 (A:) Histone 26.2 11 0.00079 27.9 1.3 27 54-87 8-34 (88)
11 d1nvra_ d.144.1.7 (A:) Cell cy 24.1 13 0.00095 31.4 1.5 30 56-93 236-265 (271)
12 d1ob3a_ d.144.1.7 (A:) Cyclin- 21.4 12 0.00088 31.1 0.8 31 55-93 256-286 (286)
No 1
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=9.1e-34 Score=231.18 Aligned_cols=76 Identities=30% Similarity=0.590 Sum_probs=72.0
Q ss_pred CCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--C
Q psy12666 50 ENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE--G 122 (347)
Q Consensus 50 ~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~--~ 122 (347)
.||||||++||++||+++|+ ++|||+|||+| |||+. +..|||||||||||+|+||+||++. +
T Consensus 2 ~KP~~sY~~LI~~Ai~~sp~--------~~ltL~eIy~~i~~~fpyfr~---~~~gWkNSIRHnLS~n~~F~kv~r~~~~ 70 (98)
T d2c6ya1 2 SKPPYSYAQLIVQAITMAPD--------KQLTLNGIYTHITKNYPYYRT---ADKGWQNSIRHNLSLNRYFIKVPRSQEE 70 (98)
T ss_dssp CCCSSCHHHHHHHHHHTSTT--------SCEEHHHHHHHHHHHCTTSCT---TCHHHHHHHHHHHHHSTTEEEECCCTTS
T ss_pred CCCCccHHHHHHHHHHhCCC--------CCccHHHHHHHHHHhCccccc---CCCCcchhhchhcccccceEeccCCCCC
Confidence 69999999999999999999 99999999999 99998 7889999999999999999999885 6
Q ss_pred CCccceeEeCCCcc
Q psy12666 123 TGKSSWWMLNPDAK 136 (347)
Q Consensus 123 ~GKG~~W~l~p~~~ 136 (347)
.|||+||+|+|++.
T Consensus 71 ~gKg~~W~l~p~~~ 84 (98)
T d2c6ya1 71 PGKGSFWRIDPASE 84 (98)
T ss_dssp CCSSCEEEECHHHH
T ss_pred CCCCceEEECccHH
Confidence 79999999999875
No 2
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.97 E-value=1.1e-33 Score=230.36 Aligned_cols=76 Identities=29% Similarity=0.495 Sum_probs=71.8
Q ss_pred CCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--C
Q psy12666 50 ENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE--G 122 (347)
Q Consensus 50 ~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~--~ 122 (347)
.||||||++||++||+++|+ ++|||+|||+| |||+. +..|||||||||||+|+||+||+++ .
T Consensus 1 vKPp~sY~~LI~~Ai~~sp~--------~~ltL~eIY~~i~~~fpyfr~---~~~gWkNSIRHnLSln~~F~kv~~~~~~ 69 (97)
T d2hdca_ 1 VKPPYSYIALITMAILQSPQ--------KKLTLSGICEFISNRFPYYRE---KFPAWQNSIRHNLSLNDCFVKIPREPGN 69 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTT--------TCBCHHHHHHHHHHHCHHHHH---HCSSHHHHHHHHHHHHHCCEEECSCTTC
T ss_pred CCCCCcHHHHHHHHHHhCCC--------cCccHHHHHHHHHHhCccccC---CCCCchhhhhhhcchhhhhcccCCCCCC
Confidence 39999999999999999999 99999999999 99998 7889999999999999999999986 5
Q ss_pred CCccceeEeCCCcc
Q psy12666 123 TGKSSWWMLNPDAK 136 (347)
Q Consensus 123 ~GKG~~W~l~p~~~ 136 (347)
.|||+||+|+++++
T Consensus 70 ~gKg~~W~l~p~~~ 83 (97)
T d2hdca_ 70 PGKGNYWTLDPQSE 83 (97)
T ss_dssp SSSCCEEECCTTHH
T ss_pred CCCCcEEEECccHH
Confidence 69999999999976
No 3
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=3.6e-32 Score=220.28 Aligned_cols=78 Identities=31% Similarity=0.505 Sum_probs=73.5
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--
Q psy12666 49 FENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE-- 121 (347)
Q Consensus 49 ~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~-- 121 (347)
+.||||||++||++||+++|+ ++|||+|||+| |||+. +..|||||||||||+|+||+||+++
T Consensus 2 l~KP~~SYa~LI~~AI~~sp~--------~~ltL~eIY~~i~~~fpyfr~---~~~gWkNSIRHnLSln~~F~kv~~~~~ 70 (94)
T d1d5va_ 2 LVKPPYSYIALITMAIQNAPE--------KKITLNGIYQFIMDRFPFYRE---NKQGWQNSIRHNLSLNECFVKVPRDDK 70 (94)
T ss_dssp CCCCSSCHHHHHHHHHHTCSS--------SSBCHHHHHHHHHHHCTHHHH---CCTTHHHHHHHHHHHCSSEEECCCCTT
T ss_pred CCCCCCCHHHHHHHHHHhCCC--------CCccHHHHHHHHHHHCCccCc---cccchHHHHHHHccccceEEEcCcCCC
Confidence 469999999999999999999 99999999999 99998 7899999999999999999999976
Q ss_pred CCCccceeEeCCCccc
Q psy12666 122 GTGKSSWWMLNPDAKA 137 (347)
Q Consensus 122 ~~GKG~~W~l~p~~~~ 137 (347)
..|||+||+|+++++.
T Consensus 71 ~~gkg~~W~l~p~~~~ 86 (94)
T d1d5va_ 71 KPGKGSYWTLDPDSYN 86 (94)
T ss_dssp SCSCCCCEEECCSCSS
T ss_pred CCCCCceEEECccHHH
Confidence 5699999999999875
No 4
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.96 E-value=2.1e-30 Score=206.56 Aligned_cols=76 Identities=43% Similarity=0.636 Sum_probs=70.2
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----ccccccc--CCCCchhhhhhhhhcccccccccccc
Q psy12666 49 FENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKF--RPANHYQNSIRHNLSLHSKFMRVQNE 121 (347)
Q Consensus 49 ~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~--~~~~GWKNSIRHNLSLn~~F~Kv~r~ 121 (347)
..||++||++||++||+++|+ ++|||+|||+| |||+.+. ...+|||||||||||+|+||+||+++
T Consensus 3 n~~~~~SY~~LI~~Ai~~sp~--------~~ltL~eIY~~i~~~fPyyr~~~~~~~~~gWkNSIRHnLSl~~~F~kv~r~ 74 (85)
T d3bpya1 3 NAWGNQSYAELISQAIESAPE--------KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE 74 (85)
T ss_dssp BTTBSCCHHHHHHHHHHHSTT--------SCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC
T ss_pred CCCCCcCHHHHHHHHHHhCCC--------CCccHHHHHHHHHHhChhhhccCcccccccchhhHHHHhhHhhheeeCCCC
Confidence 468999999999999999999 99999999999 9999742 24679999999999999999999999
Q ss_pred CCCccceeEeC
Q psy12666 122 GTGKSSWWMLN 132 (347)
Q Consensus 122 ~~GKG~~W~l~ 132 (347)
+.|||+||+||
T Consensus 75 ~~gKg~~W~i~ 85 (85)
T d3bpya1 75 ATGKSSWWMLN 85 (85)
T ss_dssp STTCCCEEEEC
T ss_pred CCCCCceeecC
Confidence 99999999996
No 5
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=5.4e-31 Score=208.74 Aligned_cols=72 Identities=26% Similarity=0.441 Sum_probs=67.4
Q ss_pred CCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhccccccccccccCCC
Q psy12666 50 ENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNEGTG 124 (347)
Q Consensus 50 ~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~~~G 124 (347)
.||||||++||++||+++|+ ++|||+|||+| |||+. +.+|||||||||||+|+||+|+++ |
T Consensus 1 vKP~~sY~~LI~~Ai~~sp~--------~~LtL~eIy~~i~~~fpyyr~---~~~gWkNSIRHnLS~n~~F~kv~~---~ 66 (82)
T d2a07f1 1 VRPPFTYATLIRQAIMESSD--------RQLTLNEIYSWFTRTFAYFRR---NAATWKNAVRHNLSLHKCFVRVEN---V 66 (82)
T ss_dssp CCCSCCHHHHHHHHHHHSTT--------SCBCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCTTBCCEEC---S
T ss_pred CcCCCcHHHHHHHHHHhCCC--------CCccHHHHHHHHHHhCccccc---CCcccchhHhHhcccccceEeCCC---C
Confidence 38999999999999999999 99999999999 99998 778999999999999999999965 8
Q ss_pred ccceeEeCCCc
Q psy12666 125 KSSWWMLNPDA 135 (347)
Q Consensus 125 KG~~W~l~p~~ 135 (347)
||+||+|+++.
T Consensus 67 kG~~W~i~~~~ 77 (82)
T d2a07f1 67 KGAVWTVDEVE 77 (82)
T ss_dssp SSEECCBCHHH
T ss_pred CCCEEEECHHH
Confidence 99999998653
No 6
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.95 E-value=2.2e-29 Score=196.50 Aligned_cols=67 Identities=31% Similarity=0.462 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhccccccccccccC---CCccc
Q psy12666 56 VNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNEG---TGKSS 127 (347)
Q Consensus 56 Ya~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~~---~GKG~ 127 (347)
|++||++||+++|+ ++|||+|||+| |||+. +..|||||||||||+|+||+||+|++ .|||+
T Consensus 1 Y~~LI~~Ai~~sp~--------~~ltL~eIy~~i~~~fpy~r~---~~~gWkNSIRHnLS~n~~F~kv~r~~~~~~gKg~ 69 (75)
T d1kq8a_ 1 YIALITMAIRDSAG--------GRLTLAEINEYLMGKFPFFRG---SYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDN 69 (75)
T ss_dssp CHHHHHHHHTTSSS--------SCBCHHHHHHHHHHHCTTGGG---TCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCC
T ss_pred CHHHHHHHHHhCCC--------CCccHHHHHHHHHHhCccccc---CCccchhHhhecccccceeEecCCCCCCCCCCcc
Confidence 89999999999999 99999999999 99998 78899999999999999999999873 39999
Q ss_pred eeEeCC
Q psy12666 128 WWMLNP 133 (347)
Q Consensus 128 ~W~l~p 133 (347)
||+|+|
T Consensus 70 ~W~l~P 75 (75)
T d1kq8a_ 70 YWMLNP 75 (75)
T ss_dssp CEECCC
T ss_pred EEEeCc
Confidence 999987
No 7
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=48.39 E-value=3 Score=30.00 Aligned_cols=27 Identities=4% Similarity=-0.095 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc
Q psy12666 55 FVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG 88 (347)
Q Consensus 55 SYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~ 88 (347)
+|..||.+||.+.-+ ++..++..|.+|
T Consensus 4 ~y~~MI~eAI~al~e-------r~GsS~~AI~ky 30 (74)
T d1hsta_ 4 TYSEMIAAAIRAEKS-------RGGSSRQSIQKY 30 (74)
T ss_dssp CHHHHHHHHHHTCCC-------SSCEEHHHHHHH
T ss_pred CHHHHHHHHHHHcCC-------CCCcCHHHHHHH
Confidence 488999999987666 477899999884
No 8
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=43.32 E-value=13 Score=26.61 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc
Q psy12666 55 FVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG 88 (347)
Q Consensus 55 SYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~ 88 (347)
+|..||.+||.+.-+ .+..++..|..|
T Consensus 5 ~y~~MI~eAI~al~e-------r~GsS~~AI~ky 31 (75)
T d1ghca_ 5 SVTELITKAVSASKE-------RKGLSLAALKKA 31 (75)
T ss_dssp SHHHHHHHHHHHCSS-------SSCCTTSSGGGS
T ss_pred CHHHHHHHHHHHcCC-------CCCcCHHHHHHH
Confidence 599999999988666 477889999985
No 9
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.81 E-value=4.5 Score=30.28 Aligned_cols=26 Identities=15% Similarity=-0.025 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCCCcccccccCC
Q psy12666 55 FVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWP 87 (347)
Q Consensus 55 SYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~ 87 (347)
||..||..||...-+ .+..++..|-.
T Consensus 8 ty~~MI~eAI~~l~e-------r~GsS~~aI~K 33 (92)
T d1usta_ 8 SYRELIIEGLTALKE-------RKGSSRPALKK 33 (92)
T ss_dssp CHHHHHHHHHTTTTT-------TSCEEHHHHHH
T ss_pred CHHHHHHHHHHHcCC-------CCCCCHHHHHH
Confidence 699999999977655 57889999988
No 10
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.21 E-value=11 Score=27.86 Aligned_cols=27 Identities=15% Similarity=-0.041 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHhCCCCCCCCCCCCcccccccCC
Q psy12666 54 FFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWP 87 (347)
Q Consensus 54 ySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~ 87 (347)
.+|..||..||.+.-+ ++..++..|-.
T Consensus 8 ~sy~~MI~eAI~~L~e-------r~GsS~~aI~K 34 (88)
T d1ussa_ 8 LTYKEMILKSMPQLND-------GKGSSRIVLKK 34 (88)
T ss_dssp CCHHHHHHHHHHHSCC-------TTSBCHHHHHH
T ss_pred CCHHHHHHHHHHHcCC-------CCCcCHHHHHH
Confidence 4689999999988766 46789999987
No 11
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.06 E-value=13 Score=31.39 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCcccccccCCcccccc
Q psy12666 56 VNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEI 93 (347)
Q Consensus 56 Ya~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~PYfk~ 93 (347)
-..||...|.-.|+ +|+|+.||.+.|||+.
T Consensus 236 ~~~li~~~L~~dP~--------~R~t~~eil~hpwf~~ 265 (271)
T d1nvra_ 236 PLALLHKILVENPS--------ARITIPDIKKDRWYNK 265 (271)
T ss_dssp HHHHHHHHSCSSTT--------TSCCHHHHTTCTTTTC
T ss_pred HHHHHHHHcCCChh--------HCcCHHHHhcCHhhCc
Confidence 45799999988898 9999999999999986
No 12
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}
Probab=21.45 E-value=12 Score=31.07 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCCCcccccccCCcccccc
Q psy12666 55 FVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEI 93 (347)
Q Consensus 55 SYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~PYfk~ 93 (347)
....||...|.-.|+ +|+|..||.+.|||+.
T Consensus 256 ~~~dli~~~L~~dP~--------~R~s~~ell~Hp~f~~ 286 (286)
T d1ob3a_ 256 SGIDLLSKMLKLDPN--------QRITAKQALEHAYFKE 286 (286)
T ss_dssp HHHHHHHHHTCSSTT--------TSCCHHHHHTSGGGGC
T ss_pred HHHHHHHHHccCChh--------HCcCHHHHhcCcccCc
Confidence 356899999999999 9999999999999973
Done!