RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12666
(347 letters)
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal
rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB:
3co7_C* 2k86_A 2uzk_A
Length = 117
Score = 78.7 bits (194), Expect = 3e-18
Identities = 44/56 (78%), Positives = 49/56 (87%), Gaps = 2/56 (3%)
Query: 102 QNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPD-AKAGKSARRRATSMET-SKFEK 155
+NSIRHNLSLHSKF+RVQNEGTGKSSWWMLNP+ K+GKS RRRA SM+ SKF K
Sbjct: 61 KNSIRHNLSLHSKFIRVQNEGTGKSSWWMLNPEGGKSGKSPRRRAASMDNNSKFAK 116
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP:
a.4.5.14
Length = 150
Score = 76.6 bits (188), Expect = 3e-17
Identities = 39/60 (65%), Positives = 49/60 (81%), Gaps = 2/60 (3%)
Query: 102 QNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDA-KAGKSARRRATSMET-SKFEKRRGR 159
+NSIRHNLSLHSKF++V NE TGKSSWWMLNP+ K+GK+ RRRA SM++ SK + R +
Sbjct: 90 KNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEGGKSGKAPRRRAASMDSSSKLLRGRSK 149
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP;
1.87A {Homo sapiens} PDB: 3co6_C*
Length = 110
Score = 68.6 bits (168), Expect = 8e-15
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 102 QNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAK 136
+NSIRHNLSLHSKF++V NE TGKSSWWMLNP+
Sbjct: 74 KNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEGG 108
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding
domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
SCOP: a.4.5.14
Length = 85
Score = 64.6 bits (158), Expect = 1e-13
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 102 QNSIRHNLSLHSKFMRVQNEGTGKSSWWMLN 132
+NSIRHNLSLHSKF++V NE TGKSSWWMLN
Sbjct: 55 KNSIRHNLSLHSKFIKVHNEATGKSSWWMLN 85
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer,
monomer, winged-helix, magnesium, transcription/DNA
complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F
2kiu_A 3qrf_F
Length = 93
Score = 51.1 bits (123), Expect = 1e-08
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 20/66 (30%)
Query: 102 QNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGRVK 161
+N++RHNLSLH F+RV+N K + W ++ ++KRR +
Sbjct: 48 KNAVRHNLSLHKCFVRVEN---VKGAVWTVDEVE-----------------YQKRRSQKI 87
Query: 162 KKVEAL 167
L
Sbjct: 88 TGSPTL 93
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription
factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Length = 142
Score = 51.0 bits (122), Expect = 4e-08
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 102 QNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGRVK 161
+NSIRHNLSLH F+R + GK S+W ++P A + + K
Sbjct: 64 KNSIRHNLSLHDMFVRETSAN-GKVSFWTIHPSA---------NRYLTLDQVFKPLDPGS 113
Query: 162 KKVEALRNGITPSPSSSVSEIRTTDS 187
++ P+ + T +
Sbjct: 114 PQLPEHLESQQKRPNPELRRNMTIKT 139
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis,
winged helix protein, protein/DNA complex; HET: DNA; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 97
Score = 48.4 bits (116), Expect = 1e-07
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 102 QNSIRHNLSLHSKFMRVQNEGT--GKSSWWMLNPDAKA----GKSARRR 144
QNSIRHNLSL+ F+++ E GK ++W L+P ++ G RRR
Sbjct: 47 QNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRR 95
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double
helix, transcription-DNA complex; HET: DNA; 2.50A {Homo
sapiens} PDB: 1d5v_A
Length = 102
Score = 48.4 bits (116), Expect = 1e-07
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 102 QNSIRHNLSLHSKFMRV--QNEGTGKSSWWMLNPDAKA----GKSARRR 144
QNSIRH+LS + F++V + GK S+W L+P + G RR+
Sbjct: 48 QNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQ 96
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus
norvegicus} SCOP: a.4.5.14
Length = 109
Score = 48.5 bits (116), Expect = 1e-07
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 13/65 (20%)
Query: 102 QNSIRHNLSLHSKFMRV--QNEGTGKSSWWMLNPDAKAGKSARRRATSM-ETSKFEKRRG 158
QNSIRHNLSL+ F+++ + GK ++W L+P ++ M + F +RR
Sbjct: 48 QNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSE----------DMFDNGSFLRRRK 97
Query: 159 RVKKK 163
R K+
Sbjct: 98 RFKRL 102
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged;
winged helix protein, structure, transcription; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 100
Score = 48.4 bits (116), Expect = 1e-07
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 7/50 (14%)
Query: 102 QNSIRHNLSLHSKFMRV---QNEGTGKSSWWMLNPDAKA----GKSARRR 144
+NS+RHNLSL+ F++V + GK ++WMLNP+++ G RRR
Sbjct: 47 RNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRR 96
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding
domain, forkhead transcription factors, interleukin
enhancer binding factor; 2.4A {Homo sapiens} SCOP:
a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Length = 111
Score = 48.5 bits (116), Expect = 1e-07
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 102 QNSIRHNLSLHSKFMRV--QNEGTGKSSWWMLNPDAKA----GKSARRR 144
QNSIRHNLSL+ F++V E GK S+W ++P +++ +RR
Sbjct: 61 QNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRR 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 45/239 (18%)
Query: 3 TVEALRNGITPSPSSSVSESLDLFPEDSPIHFQLRCL---KITPTQVDHFENDNFFVNKL 59
+E+ N + P+ + + L +FP + I L L + + V N
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYS 415
Query: 60 IVKCQ-------IVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNS-------- 104
+V+ Q I + YL+ + +H +++ + + +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRS----IVD-HYNIPKTFDSDDLIPPYLD 470
Query: 105 --IRHNLSLHSKFMRVQNEGTGKSSW-----WMLNPDAK---AGKSARRRATSMET-SKF 153
++ H K + T ++ + K + + + T +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL---EQKIRHDSTAWNASGSILNTLQQL 527
Query: 154 EKRRGRVKK---KVEALRNGI---TPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQ 206
+ + + K E L N I P ++ + TD + + IF ++Q
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 37.5 bits (86), Expect = 0.006
Identities = 51/462 (11%), Positives = 128/462 (27%), Gaps = 163/462 (35%)
Query: 5 EALRNGITPSPSSSVSESLDLFPEDSPIHFQLRCLKITPTQ-VDHF------ENDNFFVN 57
+ ++ ++ + + S L + V F N F ++
Sbjct: 40 DMPKSILS---KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 58 KLIVKCQI-----------VNPYLDSSKAFDKPCHMHELW-PGPLLEIK-----FRPANH 100
+ + + + + ++ F K + + P L+++ RPA
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQALLELRPAK- 151
Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSS-------------------WWM----------- 130
N+ + + G+GK+ +W+
Sbjct: 152 -------NVLIDG--VL----GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 131 ----------LNPDAKAG----KSARRRATSMETSK---FEKRRGR--------V--KKK 163
++P+ + + + R S++ + + V K
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 164 VEALRNG----ITPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGRLS 219
A +T + V++ + + H +L + +PD + C R
Sbjct: 259 WNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQ 316
Query: 220 PIPAQE---SP-------AWLPPYSN-----PYLGAEQLAGSLETTMK-LSSDNF----- 258
+P + +P + ++ ++L +E+++ L +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 259 ----LPYPSPPPP-----YGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSP 309
P + P +VN H + V++Q +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTIS------- 427
Query: 310 PATVMGQVLS---------SLNSSVLDDFNLNIESLQGFDCN 342
+ L +L+ S++D +N+ + FD +
Sbjct: 428 ---IPSIYLELKVKLENEYALHRSIVDHYNI----PKTFDSD 462
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 3e-04
Identities = 73/432 (16%), Positives = 107/432 (24%), Gaps = 177/432 (40%)
Query: 18 SVSESLDLFPEDSPIHF-QLR--CLKITPTQVDHFENDN-----------F--FVNKLIV 61
S+ L + P S QL+ KI P + F D+ F +V+ L+
Sbjct: 15 SLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 62 KCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNLSLHS---KFMRV 118
FD +L + ++N +H+ K ++
Sbjct: 74 P--------SKVGQFD-----------QVLNLCL---TEFENCYLEGNDIHALAAKLLQE 111
Query: 119 QNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGRVKKKVEALRNGITP----- 173
+ K+ + N A A+R S A+ G
Sbjct: 112 NDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSAL----------FRAVGEGNAQLVAIF 160
Query: 174 ----SPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESP-- 227
+ E+R H + LI +A + L
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGD--LI---------KFSAETLSELIRTTLDAEKVF 209
Query: 228 -------AWL------P--------PYSNPYLGAEQLA-------------GSLETTMK- 252
WL P P S P +G QLA G L + +K
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 253 -----------------LSSDNFL---------------------PYPSPPPPY------ 268
S ++F P S PP
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 269 ---GAPPP--------YPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSP----SPPATV 313
G P P VN N H PA KQ I S N PP +
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQVEI--SLVNGAKNLVVSGPPQS- 385
Query: 314 MGQVLSSLNSSV 325
L LN ++
Sbjct: 386 ----LYGLNLTL 393
Score = 28.5 bits (63), Expect = 3.8
Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 64/191 (33%)
Query: 182 IRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESPAWLPPYSNPYL-GA 240
+R ++ P+ +LPP L S + + S S L+ Q+ +N +L
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN----KTNSHLPAG 363
Query: 241 EQLAGSLETTMKLSSDNF-LPYPSPPPP--YG---------APP-------PY----PCP 277
+Q+ SL + N + S PP YG AP P+
Sbjct: 364 KQVEISL----VNGAKNLVV---SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 278 HH--LVNSCNCHNH---PAVKQ-------QSIS--------PSYHNSPSPSPPATVMGQV 317
+ L + H+H PA ++S P Y T G
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD---------TFDGSD 467
Query: 318 LSSLNSSVLDD 328
L L+ S+ +
Sbjct: 468 LRVLSGSISER 478
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein,
ashka family, ATPase; 2.20A {Carboxydothermus
hydrogenoformans}
Length = 631
Score = 35.6 bits (81), Expect = 0.025
Identities = 22/140 (15%), Positives = 36/140 (25%), Gaps = 9/140 (6%)
Query: 129 WMLNPDAKAGKS--ARRRATSMETSKFEKRRGRVKKKVEALRNGITPSPSSSVSEIRTTD 186
N A G +R EK R V + L + EI
Sbjct: 235 GNYNKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQLCKEHGVEKKEIMAAV 294
Query: 187 SVPHPT-------LPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESPAWLPPYSNPYLG 239
+ T + P + P + ++ P Y+G
Sbjct: 295 VAGNTTMTHLFLEIDPRYIRLEPYTPAALFIPPVPATEAKIEMNPKGFVYIMPNVASYVG 354
Query: 240 AEQLAGSLETTMKLSSDNFL 259
+ +G L T + S + L
Sbjct: 355 GDITSGVLYTGLANSDEITL 374
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 31.0 bits (69), Expect = 0.67
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 259 LPYPSPPPPYGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQVL 318
L P PPPP + + ++ S + + +PSP ++ G
Sbjct: 26 LQRPQPPPPPPSAASPGATPGSAA-------ASAERASTAAPVASPAAPSPGSSGGGGFF 78
Query: 319 SSLNSSV 325
SSL+++V
Sbjct: 79 SSLSNAV 85
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 30.7 bits (69), Expect = 0.80
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 172 TPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESPAWLP 231
+ + ++D+ P + + + + + A +P P P P
Sbjct: 347 DKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYP 406
Query: 232 PYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYGAPPPYP 275
P P G + P P PP GAPP P
Sbjct: 407 PQGYPPQGYPP-------------QGYPPPPQGAPPQGAPPAAP 437
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 30.0 bits (67), Expect = 1.1
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 3/120 (2%)
Query: 217 RLSPIPAQESPAWLPPYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYGAPPPYPC 276
+L + P A Q S + L+ P P+ P
Sbjct: 3 KLEAMSQVIQAM---PSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMT 59
Query: 277 PHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQVLSSLNSSVLDDFNLNIESL 336
+ + ++I Y + + SP + + + S +S I L
Sbjct: 60 MPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILEL 119
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 29.7 bits (66), Expect = 1.9
Identities = 31/142 (21%), Positives = 41/142 (28%), Gaps = 22/142 (15%)
Query: 169 NGITPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESPA 228
TP S + + S P+ S + G SP +SP
Sbjct: 1481 GAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGRE--GFGDYGLLGAASPYKGVQSPG 1538
Query: 229 WLPPYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYGAPPPYPCPHHLVNSCNCHN 288
+ P+S+ L P SP P + P P S
Sbjct: 1539 YTSPFSSAMSPGYGLTS--------------PSYSPSSPGYSTSPAYMPSSPSYS---PT 1581
Query: 289 HPAVKQQSISPSYH-NSPSPSP 309
P+ SPSY SPS SP
Sbjct: 1582 SPS--YSPTSPSYSPTSPSYSP 1601
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 29.4 bits (66), Expect = 2.0
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 246 SLETTMKLSSDNFLPYPSPPPPYGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYH--N 303
T S + + P P P ++ + N K Q + +
Sbjct: 342 FYLATSPPDSFLDDHHLTRPHPERVPFLVAETPRARHTLDELNPQKSKHQGVRKAKWHLG 401
Query: 304 SPSPSPPATVMGQVLSSLNS 323
S S P +M +V ++
Sbjct: 402 IRSQSRPNDIMAEVCRAIKQ 421
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 29.0 bits (64), Expect = 2.8
Identities = 12/114 (10%), Positives = 29/114 (25%), Gaps = 6/114 (5%)
Query: 203 DYRQRASSNASSCGRLSPIPAQESPAWLPPYSNPYLGAEQLAGSLETTMKLSSDNFLPYP 262
+++R A + P Q+ ++PP G + + S +
Sbjct: 3 HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62
Query: 263 SPPPPYGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQ 316
+P + ++ + P+ + P Q
Sbjct: 63 TPAQEQLHQQIDQATTSM------NDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110
Score = 28.3 bits (62), Expect = 4.9
Identities = 10/65 (15%), Positives = 18/65 (27%)
Query: 260 PYPSPPPPYGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQVLS 319
Y P P + P + + + Q PS +P + Q +
Sbjct: 15 QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQID 74
Query: 320 SLNSS 324
+S
Sbjct: 75 QATTS 79
Score = 27.5 bits (60), Expect = 8.5
Identities = 9/96 (9%), Positives = 16/96 (16%)
Query: 222 PAQESPAWLPPYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYGAPPPYPCPHHLV 281
PAQ P P + G + P +
Sbjct: 26 PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHL 85
Query: 282 NSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQV 317
++ + A Q +
Sbjct: 86 HNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
Score = 27.1 bits (59), Expect = 10.0
Identities = 15/122 (12%), Positives = 28/122 (22%), Gaps = 2/122 (1%)
Query: 189 PHPTLPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESPAWLPPYSNPYLGAEQLAGSLE 248
P+ Q ++ S G++ P P+ + +
Sbjct: 16 YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQ 75
Query: 249 TTMKLSSDNFLPYPSPPPPYGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPS 308
T ++ + P P P P + P PS +
Sbjct: 76 ATTSMNDMHLHNVPLVDPNAYMQPQV--PVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133
Query: 309 PP 310
P
Sbjct: 134 PM 135
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin,
calcium ION; 1.91A {Bacillus SP}
Length = 416
Score = 28.0 bits (61), Expect = 5.0
Identities = 12/90 (13%), Positives = 27/90 (30%)
Query: 158 GRVKKKVEALRNGITPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGR 217
V ++ A N + S I S ++ G I +R +S
Sbjct: 317 VGVFSQIYAQNNYFSFDWDIDPSLIIKVWSKNEESMYETGTIVDLPNGRRYIDLVASYNE 376
Query: 218 LSPIPAQESPAWLPPYSNPYLGAEQLAGSL 247
+ + ++ W P + + + +
Sbjct: 377 SNTLQLKKEVTWKPMFYHVIHPTPSVPALV 406
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.405
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,373,218
Number of extensions: 308382
Number of successful extensions: 775
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 51
Length of query: 347
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 253
Effective length of database: 4,077,219
Effective search space: 1031536407
Effective search space used: 1031536407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.7 bits)