RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12666
         (347 letters)



>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 97

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 101 YQNSIRHNLSLHSKFMRVQNE--GTGKSSWWMLNPDA----KAGKSARRR 144
           +QNSIRHNLSL+  F+++  E    GK ++W L+P +      G   RRR
Sbjct: 46  WQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRR 95


>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 11/61 (18%)

Query: 101 YQNSIRHNLSLHSKFMRV--QNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRG 158
           +QNSIRHNLSL+  F++V    E  GK S+W ++P +++          +    F KRR 
Sbjct: 47  WQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASES---------KLIEQAFRKRRP 97

Query: 159 R 159
           R
Sbjct: 98  R 98


>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 85

 Score = 48.0 bits (114), Expect = 4e-08
 Identities = 26/31 (83%), Positives = 29/31 (93%)

Query: 102 QNSIRHNLSLHSKFMRVQNEGTGKSSWWMLN 132
           +NSIRHNLSLHSKF++V NE TGKSSWWMLN
Sbjct: 55  KNSIRHNLSLHSKFIKVHNEATGKSSWWMLN 85


>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
           fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 47.5 bits (113), Expect = 7e-08
 Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 2/37 (5%)

Query: 101 YQNSIRHNLSLHSKFMRV--QNEGTGKSSWWMLNPDA 135
           +QNSIRHNLSL+  F++V   ++  GK S+W L+PD+
Sbjct: 48  WQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDS 84


>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 75

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 4/44 (9%)

Query: 94  KFRPANH-YQNSIRHNLSLHSKFMRVQNEGT---GKSSWWMLNP 133
            FR +   ++NS+RHNLSL+  F++V  + +   GK ++WMLNP
Sbjct: 32  FFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNP 75


>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 44.4 bits (105), Expect = 7e-07
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 99  NHYQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRR 144
             ++N++RHNLSLH  F+RV+N    K + W ++         +RR
Sbjct: 44  ATWKNAVRHNLSLHKCFVRVEN---VKGAVWTVDEVEY----QKRR 82


>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 134

 Score = 29.5 bits (66), Expect = 0.30
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 38/137 (27%)

Query: 40  KITPTQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKF---- 95
           ++ P Q   FEN+ FF  KL  +C                            EIK+    
Sbjct: 2   RVVPDQRSKFENEEFF-RKLSREC----------------------------EIKYTGFR 32

Query: 96  -RPANHYQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFE 154
            RP    Q   ++  +       +    TG +      P +  G   +R+  S E    E
Sbjct: 33  DRPHEERQARFQN--ACRDGRSEIAFVATGTNLSLQFFPASWQG--EQRQTPSREYVDLE 88

Query: 155 KRRGRVKKKVEALRNGI 171
           +  G+V  K   + NG+
Sbjct: 89  REAGKVYLKAPMILNGV 105


>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
           UvrB {Thermus thermophilus [TaxId: 274]}
          Length = 174

 Score = 27.7 bits (61), Expect = 1.4
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 99  NHYQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRG 158
              +  +R   SL     R      G+  W   +  ++          +M+ +  E  R 
Sbjct: 108 ADKEGFLRSERSLIQTIGRAARNARGEV-WLYADRVSE----------AMQRAIEETNRR 156

Query: 159 RVKKKVEALRNGITP 173
           R  ++   L +GITP
Sbjct: 157 RALQEAYNLEHGITP 171


>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
           {Leishmania major [TaxId: 5664]}
          Length = 158

 Score = 27.0 bits (59), Expect = 2.3
 Identities = 13/62 (20%), Positives = 20/62 (32%)

Query: 271 PPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQVLSSLNSSVLDDFN 330
           P  YP     +  CN   HP V ++S S           P   +  +       +L   N
Sbjct: 52  PSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPN 111

Query: 331 LN 332
            +
Sbjct: 112 PS 113


>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
           {Basidomycetos fungus (Phanerochaete chrysosporium)
           [TaxId: 5306]}
          Length = 357

 Score = 26.1 bits (57), Expect = 7.1
 Identities = 15/57 (26%), Positives = 17/57 (29%), Gaps = 6/57 (10%)

Query: 262 PSPPPPYGAPPPYPC---PHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMG 315
           P P P  G P  +P    P  L  SC     P     +  P    S     P   M 
Sbjct: 294 PVPKPATGQPAMFPASTGPQDLELSCPSERFPT---LTTQPGASQSLIAHCPDGSMS 347


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.405 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,343,831
Number of extensions: 63785
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 15
Length of query: 347
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,226,816
Effective search space: 320198976
Effective search space used: 320198976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.5 bits)