BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12669
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 102 bits (254), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD 91
LDT+N+D + +N D L+ FY WCRFS + P F+E + P + +++CD
Sbjct: 10 LDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCD 69
Query: 92 DYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEI 145
+ + + Y I KYPT+K+ R+G K EYR +R+V+AL Y+R++ DP EI
Sbjct: 70 QHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEI 123
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD 91
L+ N D + D VL+ FY WC P ++++ TL + P A+ KI+
Sbjct: 22 LNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDP---PIAVAKIDAT 78
Query: 92 DYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVRE 136
+ +++ YPT+KI++ G + ++Y RT E +V VRE
Sbjct: 79 SASMLASKFDVSGYPTIKILKKG--QAVDYDGSRTQEEIVAKVRE 121
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
++L TD+ + ++D VL F+ WC M P + + TL+ + + +I+
Sbjct: 17 VKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-----KNITLAQID 71
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGSIEK-LEYRRERTVEALVKYV 134
C + + +C ++NI +P++KI ++ + ++Y RT EA+V+++
Sbjct: 72 CTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFM 117
Score = 35.8 bits (81), Expect = 0.010, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 38 DYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC 97
+ V D VL+L+Y WC + PT+ E+ T N + I K+ D E+
Sbjct: 370 EIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSD---VLIAKL--DHTENDV 424
Query: 98 EDYNIVKYPTVKIMRHG-SIEKLEYRRERTVEALVKYVRE 136
I YPT+ + G E + Y+ R++++L +++E
Sbjct: 425 RGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE 464
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 30 IELDTDNVDY-VRDNYDFVLIL--FYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
+EL DN + + D L+L F+ WC + P ++ L ++P +
Sbjct: 4 LELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVP------LA 57
Query: 87 KINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
K++C + C Y + YPT+KI R G E Y RT + +V +++++ ++
Sbjct: 58 KVDCTANTNTCNKYGVSGYPTLKIFRDGE-EAGAYDGPRTADGIVSHLKKQAGPASV 113
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
+ L DN D V +N D +L+ FY WC + P +++ L P + K++
Sbjct: 10 LSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPP---IPLAKVD 66
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREE 137
+ + + +++ YPT+KI R G +Y R +V Y+ E+
Sbjct: 67 ATEQTDLAKRFDVSGYPTLKIFRKG--RPFDYNGPREKYGIVDYMIEQ 112
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD 91
L+ N D + D VL+ FY WC P ++++ L + P + KI+
Sbjct: 20 LNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDP---PIPVAKIDAT 76
Query: 92 DYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENL 151
+ +++ YPT+KI++ G + ++Y RT E +V VR E+ P P E L
Sbjct: 77 SASVLASRFDVSGYPTIKILKKG--QAVDYEGSRTQEEIVAKVR-EVSQPDWTPPPEVTL 133
Query: 152 V 152
V
Sbjct: 134 V 134
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD 91
L +N D V ++ D +L+ FY WC + P +++ L P + K++
Sbjct: 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSP---PIPLAKVDAT 191
Query: 92 DYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREE 137
+ + +++ YPT+KI R G +Y R +V Y+ E+
Sbjct: 192 AETDLAKRFDVSGYPTLKIFRKG--RPYDYNGPREKYGIVDYMIEQ 235
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 49.3 bits (116), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105
+L+ F+ WC + + P ++ L ++P + K++C + C Y + Y
Sbjct: 23 LMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVP------LAKVDCTANTNTCNKYGVSGY 76
Query: 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENL 151
PT+KI R G E Y RT + +V +++++ ++ + EE
Sbjct: 77 PTLKIFRDGE-EAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEF 121
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 35 DNVDYVRDNYDF-VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY 93
+N D + +N + VLI FY WC + P + E L L + I K++
Sbjct: 360 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKE----LGEKLSKDPNIVIAKMDATA- 414
Query: 94 ESVCEDYNIVKYPTVKIM-RHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEE 148
V Y + +PT+ + + +Y R + + Y++ E +P + I EE
Sbjct: 415 NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPV-IQEE 469
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107
L+ FY WC + P + + L +++ + +N D ++S+ Y + +PT
Sbjct: 39 LVEFYAPWCGHCQRLTPEWKKAATALKDVV------KVGAVNADKHQSLGGQYGVQGFPT 92
Query: 108 VKIMRHGSIEKLEYRRERTVEALV 131
+KI + +Y+ RT EA+V
Sbjct: 93 IKIFGANKNKPEDYQGGRTGEAIV 116
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 44 YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIV 103
+ ++L+ FY WC A+ P + + L E R + K++ + + + Y +
Sbjct: 24 HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIR---LAKVDATEESDLAQQYGVR 80
Query: 104 KYPTVKIMRHG-SIEKLEYRRERTVEALVKYVRE 136
YPT+K R+G + EY R + +V ++++
Sbjct: 81 GYPTIKFFRNGDTASPKEYTAGREADDIVNWLKK 114
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
I FY WC + PT++E+ P I +++C ++C Y++ YP
Sbjct: 26 TFIKFYAPWCGHCKTLAPTWEELSK---KEFPGLAGVKIAEVDCTAERNICSKYSVRGYP 82
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMD 140
T+ + R G + E+ R +++L ++V + D
Sbjct: 83 TLLLFR-GGKKVSEHSGGRDLDSLHRFVLSQAKD 115
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 44.7 bits (104), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107
L+ F+ W S A+LP + L L + ++C +E +C YNI YPT
Sbjct: 459 LVDFFAPWSPPSRALLPELRKASTLLYGQL------KVGTLDCTIHEGLCNMYNIQAYPT 512
Query: 108 VKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
+ SI EY + E +++++ E+L +P++
Sbjct: 513 TVVFNQSSIH--EYEGHHSAEQILEFI-EDLRNPSV 545
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 41 RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDY 100
R + + ++ FY W S ++P + + TL L+ + ++C Y S C
Sbjct: 560 RKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLI------NVGSVDCGQYHSFCTQE 613
Query: 101 NIVKYPTVKIMRHGSIEKLEY 121
N+ +YP ++ S + +Y
Sbjct: 614 NVQRYPEIRFYPQKSSKAYQY 634
Score = 36.6 bits (83), Expect = 0.006, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 51 FYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKI 110
FY W S P F E+L +I K K++C Y C+ I YP+VK+
Sbjct: 682 FYAPWSGPSQNFAPEF-ELLARMIK-----GKVRAGKVDCQAYPQTCQKAGIKAYPSVKL 735
Query: 111 MRH----GSI--EKLEYRRERTVEALVKYVREELMDPTIEIPEEE 149
++ SI E++ R +T+ AL+ Y + E + ++ ++E
Sbjct: 736 YQYERAKKSIWEEQINSRDAKTIAALI-YGKLETLQSQVKRNKDE 779
Score = 36.6 bits (83), Expect = 0.006, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
I L+ D ++ + + FY S + PT+ E + LL I +N
Sbjct: 119 ITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLL------RIGAVN 172
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEE 149
C D +C + YP++ I R G + ++Y +R+ E+LV + + + E+
Sbjct: 173 CGDDRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAFAMQHVRSTVTEL-STG 230
Query: 150 NLVN 153
N VN
Sbjct: 231 NFVN 234
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
I FY WC + PT++E+ P I +++C ++C Y++ YP
Sbjct: 19 TFIKFYAPWCGHCKTLAPTWEELSK---KEFPGLAGVKIAEVDCTAERNICSKYSVRGYP 75
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMD 140
T+ + R G + E+ R +++L ++V + D
Sbjct: 76 TLLLFR-GGKKVSEHSGGRDLDSLHRFVLSQAKD 108
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
I FY WC + PT++E+ P I +++C ++C Y++ YP
Sbjct: 24 TFIKFYAPWCGHCKTLAPTWEELSK---KEFPGLAGVKIAEVDCTAERNICSKYSVRGYP 80
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYV 134
T+ + R G + E+ R +++L ++V
Sbjct: 81 TLLLFR-GGKKVSEHSGGRDLDSLHRFV 107
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
I L+ D ++ + + FY C + PT+ E + LL I +N
Sbjct: 100 ITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLL------RIGAVN 153
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEI 145
C D +C + YP++ I R G + ++Y +R+ E+LV + + + E+
Sbjct: 154 CGDDRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAFAMQHVRSTVTEL 208
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 33 DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD 92
D+ ++V ++ V++ F+ WC S + P DE+ K A+ K+N D+
Sbjct: 7 DSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSG------KIAVYKLNTDE 60
Query: 93 YESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVK 132
+ YNI PTV ++G R+E + A+ K
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGE------RKESIIGAVPK 94
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 40 VRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED 99
V D+ VLI FY WC A+ P ++E L L + I K++ + E
Sbjct: 21 VLDDTKDVLIEFYAPWCGHCKALAPKYEE-LGALYAKSEFKDRVVIAKVDATANDVPDE- 78
Query: 100 YNIVKYPTVKIMRHGS-IEKLEYRRERTVEALVKYVRE 136
I +PT+K+ G+ + + Y RTVE L+K++ E
Sbjct: 79 --IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 51 FYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKI 110
FY WC P F E+L +I K K++C Y C+ I YP+VK+
Sbjct: 28 FYAPWCGPCQNFAPEF-ELLARMIK-----GKVRAGKVDCQAYPQTCQKAGIKAYPSVKL 81
Query: 111 MRH----GSI--EKLEYRRERTVEALVKYVREELMDPTIE 144
++ SI E++ R +T+ AL+ Y + E + ++
Sbjct: 82 YQYERAKKSIWEEQINSRDAKTIAALI-YGKLETLQSQVK 120
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
I LD+ N D +++ ++ F+ +WC + + P +E L + + K+N
Sbjct: 2 IHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEE-------LAEDYPQVGFGKLN 54
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHG 114
D+ + Y ++ PTV + G
Sbjct: 55 SDENPDIAARYGVMSLPTVIFFKDG 79
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 33 DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD 92
D+ ++V ++ V++ F+ WC + P DE+ K A+ K+N D+
Sbjct: 7 DSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG------KIAVYKLNTDE 60
Query: 93 YESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVK 132
+ YNI PTV ++G R+E + A+ K
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGE------RKESIIGAVPK 94
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 33 DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD 92
D+ ++V ++ V++ F+ WC + P DE+ K A+ K+N D+
Sbjct: 6 DSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG------KIAVYKLNTDE 59
Query: 93 YESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVK 132
+ YNI PTV ++G R+E + A+ K
Sbjct: 60 APGIATQYNIRSIPTVLFFKNGE------RKESIIGAVPK 93
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC S + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPSKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD 91
L++ N D V++ F+ +WC + + P +E L N P+ A K+N +
Sbjct: 11 LNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEE----LANDYPQ---VAFGKLNTE 63
Query: 92 DYESVCEDYNIVKYPTVKIMRHGSI 116
+ + + Y I+ PT+ ++G +
Sbjct: 64 ESQDIAMRYGIMSLPTIMFFKNGEL 88
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ WC M P F TL + + KI+ + +V + I P
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAG------QVRLAKIDTQAHPAVAGRHRIQGIP 120
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
I+ H E R LV +VR +L
Sbjct: 121 AF-ILFHKGRELARAAGARPASELVGFVRGKL 151
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLI---NLLPEPRKFAITKINCDDYESVCEDYNIV 103
V +L+YV W R SVA + +D++ ++ N L F +I+ + Y V E +
Sbjct: 36 VFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHL----TFVAARIDGEKYPDVIERMRVS 91
Query: 104 KYPTVK-IMRHGSIEKLEYRRERTVEALVKYV 134
+PT++ R E EY +R + + +V
Sbjct: 92 GFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + + P DE+ K + K+N D Y I P
Sbjct: 43 ILVDFWAEWCGPAKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 96
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 97 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 127
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 51 FYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKI 110
F+ WC ++A PT+ E+ + + P A+ + +VC ++NI +PTV+
Sbjct: 37 FFASWCGHAIAFAPTWKELANDVKDWRP-ALNLAVLDCAEETNSAVCREFNIAGFPTVRF 95
Query: 111 MR 112
+
Sbjct: 96 FQ 97
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCACAKMIAPILDEIADEY------QGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGHCKMIAPILDEIADEY------QGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCVWCKMIAPILDEIADEY------QGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 33 ILVDFWAEWCGPCKMIAPILDEIADEY------QGKLTVAKLNIDQNPGTAPKYGIRGIP 86
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENLVNV 154
T+ + ++G + + V AL K +E +D + E+ V V
Sbjct: 87 TLLLFKNGEVAATK------VGALSKGQLKEFLDANLAGSAMESTVMV 128
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 38 DYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC 97
D + + V++ F+ +WC + P ++E T K K++ D+ V
Sbjct: 20 DSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY-------TKMVFIKVDVDEVSEVT 72
Query: 98 EDYNIVKYPTVKIMRHGS 115
E NI PT K+ ++GS
Sbjct: 73 EKENITSMPTFKVYKNGS 90
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
IE+ N D + VL+ F+ +WC + P +E+ K + K++
Sbjct: 5 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG------KLLVAKLD 58
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGS 115
D+ Y + PTV + + G
Sbjct: 59 VDENPKTAXRYRVXSIPTVILFKDGQ 84
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
IE+ N D + VL+ F+ +WC + P +E+ K + K++
Sbjct: 4 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG------KLLVAKLD 57
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGS 115
D+ Y + PTV + + G
Sbjct: 58 VDENPKTAXRYRVXSIPTVILFKDGQ 83
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 24 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGTP 77
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 78 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 108
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIAEEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGDVAATK------VGALSKGQLKEFLDANL 107
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADDYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRSIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 33 DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD 92
D+D VR + D ++I+F WC+ M PTF+E+ + + +FA ++ +D
Sbjct: 6 DSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDI----RFAY--MDAED 59
Query: 93 YESVCEDYNIVKYPTVKIMRHGSIEKL 119
E + NI P++ + G I ++
Sbjct: 60 AEKTMAELNIRTLPSLALFVDGMIREV 86
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 51 FYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINC--DDYESVCEDYNIVKYPTV 108
F+ WC +A PT+ + + P + ++C + +VC D+NI +PTV
Sbjct: 37 FFASWCGHCIAFAPTWXALAEDVKAWRP---ALYLAALDCAEETNSAVCRDFNIPGFPTV 93
Query: 109 KIM------RHGSI-----EKLEYRRERTVEAL 130
+ G++ ++ RER ++AL
Sbjct: 94 RFFXAFTXNGSGAVFPVAGADVQTLRERLIDAL 126
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCEMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC + P+ + + + K I K+N D+ Y ++ P
Sbjct: 26 VLVDFWAAWCGPCRQIAPSLEAIAAEYGD------KIEIVKLNIDENPGTAAKYGVMSIP 79
Query: 107 TVKIMRHGSIEK 118
T+ + + G + K
Sbjct: 80 TLNVYQGGEVAK 91
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAACK------VGALSKGQLKEFLDANL 107
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V++ F+ +WC + P ++++ + K + K++ DD+ + +Y + P
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAK------QHGKVVMAKVDIDDHTDLAIEYEVSAVP 87
Query: 107 TVKIMRHGSI--EKLEYRRERTVEALVK 132
TV M++G + + + + E +EA +K
Sbjct: 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLK 115
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 47 VLILFYVKWCRFSVAML-PTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105
+L+ F+ +WC M+ P DE+ K + K+N D Y I
Sbjct: 23 ILVDFWAEWCGRPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGI 76
Query: 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
PT+ + ++G + + V AL K +E +D +
Sbjct: 77 PTLLLFKNGEVAATK------VGALSKGQLKEFLDANL 108
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 17/109 (15%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
+E T ++ V+I F WC S M P F ++ N + K++
Sbjct: 23 LEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAV-------FLKVD 75
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
D+ + + E +++ PT M+ G + ++R V A ++EEL
Sbjct: 76 VDELKPIAEQFSVEAMPTFLFMKEGDV------KDRVVGA----IKEEL 114
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC + P DE+ + K K+N D+ +V +Y I P
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKD------KLKCVKLNTDESPNVASEYGIRSIP 75
Query: 107 TVKIMRHG 114
T+ + + G
Sbjct: 76 TIMVFKGG 83
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 45 DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK 104
VL+ F+ +WC + P E+ K + K+N DD Y +
Sbjct: 21 GLVLVDFWAEWCGPCKMIGPALGEIGKEFAG------KVTVAKVNIDDNPETPNAYQVRS 74
Query: 105 YPTVKIMRHGSI 116
PT+ ++R G +
Sbjct: 75 IPTLMLVRDGKV 86
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P D++ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDDIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC M P +E + K + K+N D+ + I+ P
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAKLNVDENPETTSQFGIMSIP 73
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMD 140
T+ + + G R V+ L+ Y +E ++
Sbjct: 74 TLILFKGG----------RPVKQLIGYQPKEQLE 97
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC M P +E + K + K+N D+ + I+ P
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAKLNVDENPETTSQFGIMSIP 73
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMD 140
T+ + + G R V+ L+ Y +E ++
Sbjct: 74 TLILFKGG----------RPVKQLIGYQPKEQLE 97
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC M P +E + K + K+N D+ + I+ P
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAKLNVDENPETTSQFGIMSIP 73
Query: 107 TVKIMRHGSIEK--LEYRRERTVEA 129
T+ + + G K + Y+ + +EA
Sbjct: 74 TLILFKGGEPVKQLIGYQPKEQLEA 98
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 30 IELDTDNVDY-VRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKI 88
IEL D+ D V D+ D ++ FY WC + P + + K A
Sbjct: 10 IELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDA 69
Query: 89 NCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVK 132
+ + + Y I +PT+KI + G ++Y RT +V
Sbjct: 70 TVN--QVLASRYGIRGFPTIKIFQKGE-SPVDYDGGRTRSDIVS 110
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC M P +E + K + K+N D+ + I+ P
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAKLNVDENPETTSQFGIMSIP 73
Query: 107 TVKIMRHGSIEK--LEYRRERTVEA 129
T+ + + G K + Y+ + +EA
Sbjct: 74 TLILFKGGEPVKQLIGYQPKEQLEA 98
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105
V+I FY WC + P +E+ ++ +++ K++ D+ E + +D I
Sbjct: 22 LVVIDFYATWCGPCKMIAPKLEELSQSMSDVV-------FLKVDVDECEDIAQDNQIACM 74
Query: 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVRE 136
PT M++G +KL+ + L++ V +
Sbjct: 75 PTFLFMKNG--QKLDSLSGANYDKLLELVEK 103
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P +E+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILEEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
+E D L+ F+ WC + P +E+ + + K+N
Sbjct: 36 VEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG------RLKVVKVN 89
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGS 115
D++ + Y + PT+ + R G+
Sbjct: 90 VDEHPGLAARYGVRSVPTLVLFRRGA 115
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 31 ELDTDNVDYVRDNYDFV-LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
EL + D N ++ L+ FY WC + TF + L ++ + +N
Sbjct: 21 ELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVV------QVAAVN 74
Query: 90 CD--DYESVCEDYNIVKYPTVKIMRHGSIE 117
CD +++C Y++ +PT+ + R I+
Sbjct: 75 CDLNKNKALCAKYDVNGFPTLMVFRPPKID 104
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSI 116
T+ + ++G +
Sbjct: 77 TLLLFKNGEV 86
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD 91
L +N D V N VL+ + +WC P + +V K ++N D
Sbjct: 9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKY------KGKAVFGRLNVD 62
Query: 92 DYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
+ + + + Y+++ PT I +G + V++LV V E+ ++ T+
Sbjct: 63 ENQKIADKYSVLNIPTTLIFVNGQL----------VDSLVGAVDEDTLESTV 104
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSI 116
T+ + ++G +
Sbjct: 77 TLLLFKNGEV 86
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKLIASILDEIADEY------QGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
T+ + ++G + + V AL K +E +D +
Sbjct: 77 TLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 41 RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDY 100
+ + +++ F WC + P F E+ N+ K++ D+ ++V E++
Sbjct: 23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNV-------TFLKVDVDELKAVAEEW 75
Query: 101 NIVKYPTVKIMRHGSI 116
N+ PT ++ G +
Sbjct: 76 NVEAMPTFIFLKDGKL 91
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105
V++ F+ WC + P F E L E K++ D E YNI
Sbjct: 35 LVVVDFFATWCGPCKTIAPLFKE--------LSEKYDAIFVKVDVDKLEETARKYNISAM 86
Query: 106 PTVKIMRHG 114
PT +++G
Sbjct: 87 PTFIAIKNG 95
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105
V++ F+ WC + P F E L E K++ D E YNI
Sbjct: 26 LVVVDFFATWCGPCKTIAPLFKE--------LSEKYDAIFVKVDVDKLEETARKYNISAM 77
Query: 106 PTVKIMRHG 114
PT +++G
Sbjct: 78 PTFIAIKNG 86
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 31 ELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINC 90
E DT + +D V+I F WC + P F E + K++
Sbjct: 16 EFDTHMANG-KDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI-------FLKVDV 67
Query: 91 DDYESVCEDYNIVKYPTVKIMRHG 114
D+ + V E YN+ PT ++ G
Sbjct: 68 DELKDVAEAYNVEAMPTFLFIKDG 91
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 33 DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD 92
D+ + D V+ + +L+ F+ +WC + P DE+ K + K+N D
Sbjct: 10 DSFDTDLVKAD-GAILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQ 62
Query: 93 YESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
Y PT+ + ++G + + V AL K +E +D +
Sbjct: 63 NPGTAPKYIERGIPTLLLFKNGEVAATK------VGALSKGQLKEFLDANL 107
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC S + P +E+ + K++ D ++ +V P
Sbjct: 30 VLVDFWATWCGPSKMVAPVLEEIATE------RATDLTVAKLDVDTNPETARNFQVVSIP 83
Query: 107 TVKIMRHG 114
T+ + + G
Sbjct: 84 TLILFKDG 91
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 41 RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDY 100
+ + V++ F+ WC + P E+ + + K++ D+ E + +Y
Sbjct: 17 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD------NVVVLKVDVDECEDIAMEY 70
Query: 101 NIVKYPTVKIMRHG-SIEKLEYRRERTVEALVK 132
NI PT +++G +E+ + +E ++K
Sbjct: 71 NISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 103
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 38 DYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC 97
D D V + FY WC + P +D++ T + I K++ E
Sbjct: 261 DVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGET----YKDHENIVIAKMDSTANE--V 314
Query: 98 EDYNIVKYPTVKIMRHGSIEK-LEYRRERTVEALVKYVREELMD 140
E + +PT+K + ++Y ERT++ K++ D
Sbjct: 315 EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQD 358
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 41 RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDY 100
+ + V++ F+ WC + P E+ + + K++ D+ E + +Y
Sbjct: 22 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD------NVVVLKVDVDECEDIAMEY 75
Query: 101 NIVKYPTVKIMRHG-SIEKLEYRRERTVEALVK 132
NI PT +++G +E+ + +E ++K
Sbjct: 76 NISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 108
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD-DYESVCEDYNIVKY 105
V++ + +WC S AM P ++++ ++++ K++C+ + +++ ++ I
Sbjct: 27 VVLDMFTQWCGPSKAMAPKYEKLAEEYLDVI-------FLKLDCNQENKTLAKELGIRVV 79
Query: 106 PTVKIMRHGSI 116
PT KI++ S+
Sbjct: 80 PTFKILKENSV 90
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V+I F WC + P F E + K++ D+ + V E YN+ P
Sbjct: 39 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-------FLKVDVDELKEVAEKYNVEAMP 91
Query: 107 TVKIMRHGS-IEK-LEYRRERTVEALVKYV 134
T ++ G+ +K + R++ +VK+V
Sbjct: 92 TFLFIKDGAEADKVVGARKDDLQNTIVKHV 121
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V + FY WC + P +D++ T + I K+ D + E + +P
Sbjct: 28 VFVEFYAPWCGHCKQLAPIWDKLGET----YKDHENIVIAKM--DSTANEVEAVKVHSFP 81
Query: 107 TVKIMRHGSIEK-LEYRRERTVEALVKYV 134
T+K + ++Y ERT++ K++
Sbjct: 82 TLKFFPASADRTVIDYNGERTLDGFKKFL 110
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105
V++ F WC + P F + N++ +++ DD + V Y I
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-------FLEVDVDDAQDVAPKYGIRGI 74
Query: 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
PT+ + ++G + + V AL K +E +D +
Sbjct: 75 PTLLLFKNGEVAATK------VGALSKGQLKEFLDANL 106
>pdb|1IGS|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus At 2.0 A Resolution
pdb|1JUK|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Trigonal Crystal Form
pdb|1JUL|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Second Orthorhombic Crystal Form
Length = 248
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 124 ERTVEALVKYVREELMDPTIEIPEEENL 151
ER +E+L++Y R M+P IEI +E +L
Sbjct: 139 ERELESLLEYARSYGMEPLIEINDENDL 166
>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase
(Igps)with Reduced
1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
(Rcdrp)
pdb|1LBL|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Igps) In Complex With 1-(O-Carboxyphenylamino)-1-
Deoxyribulose 5'-Phosphate (Cdrp)
pdb|1A53|A Chain A, Complex Of Indole-3-Glycerolphosphate Synthase From
Sulfolobus Solfataricus With Indole-3-Glycerolphosphate
At 2.0 A Resolution
Length = 247
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 124 ERTVEALVKYVREELMDPTIEIPEEENL 151
ER +E+L++Y R M+P IEI +E +L
Sbjct: 138 ERELESLLEYARSYGMEPLIEINDENDL 165
>pdb|2C3Z|A Chain A, Crystal Structure Of A Truncated Variant Of Indole-3-
Glycerol Phosphate Synthase From Sulfolobus Solfataricus
Length = 222
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 124 ERTVEALVKYVREELMDPTIEIPEEENL 151
ER +E+L++Y R M+P IEI +E +L
Sbjct: 113 ERELESLLEYARSYGMEPLIEINDENDL 140
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC + P +E+ + K++ D ++ +V P
Sbjct: 28 VLVDFWATWCGPCKMVAPVLEEIATE------RATDLTVAKLDVDTNPETARNFQVVSIP 81
Query: 107 TVKIMRHG 114
T+ + + G
Sbjct: 82 TLILFKDG 89
>pdb|3UXA|A Chain A, Designed Protein Ke59 R1 710H
pdb|3UXA|B Chain B, Designed Protein Ke59 R1 710H
pdb|3UXD|A Chain A, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
pdb|3UXD|B Chain B, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
Length = 252
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 124 ERTVEALVKYVREELMDPTIEIPEEENL 151
ER +E+L++Y R M+P I I +EE+L
Sbjct: 139 ERELESLLEYARSYGMEPAIVINDEEDL 166
>pdb|3UY7|A Chain A, Designed Protein Ke59 R1 710H WITH G130S MUTATION
pdb|3UY7|B Chain B, Designed Protein Ke59 R1 710H WITH G130S MUTATION
Length = 252
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 124 ERTVEALVKYVREELMDPTIEIPEEENL 151
ER +E+L++Y R M+P I I +EE+L
Sbjct: 139 ERELESLLEYARSYGMEPAIVINDEEDL 166
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC + P +E+ + K++ D ++ +V P
Sbjct: 33 VLVDFWATWCGPCKMVAPVLEEIATE------RATDLTVAKLDVDTNPETARNFQVVSIP 86
Query: 107 TVKIMRHG 114
T+ + + G
Sbjct: 87 TLILFKDG 94
>pdb|3HOJ|A Chain A, Crystal Structure Of A Novel Engineered Retroaldolase:
Ra-22
Length = 248
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 124 ERTVEALVKYVREELMDPTIEIPEEENL 151
ER +E+L++Y R M+P I+I +E +L
Sbjct: 139 ERELESLLEYARSYGMEPLIKINDENDL 166
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
++ FY WC + P +E+ K I K+N D + D+ I P
Sbjct: 54 AIVDFYADWCGPCKMVAPILEELSKEYAG------KIYIYKVNVDKEPELARDFGIQGIP 107
Query: 107 TV 108
T+
Sbjct: 108 TI 109
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
++ FY WC + P +E+ K I K+N D + D+ I P
Sbjct: 54 AIVDFYADWCGPCKMVAPILEELSKEYAG------KIYIYKVNVDKEPELARDFGIQSIP 107
Query: 107 TV 108
T+
Sbjct: 108 TI 109
>pdb|3O6Y|X Chain X, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
pdb|3UD6|A Chain A, Structural Analyses Of Covalent Enzyme-Substrate Analogue
Complexes Reveal Strengths And Limitations Of De Novo
Enzyme Design
Length = 258
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 124 ERTVEALVKYVREELMDPTIEIPEEENL 151
ER +E+L++Y R M+P I+I +E +L
Sbjct: 139 ERELESLLEYARSYGMEPIIKINDENDL 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,046,287
Number of Sequences: 62578
Number of extensions: 147362
Number of successful extensions: 648
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 121
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)