Query psy12669
Match_columns 157
No_of_seqs 130 out of 1019
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 16:28:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03006 PDI_a_EFP1_N PDIa fami 100.0 1.4E-27 3.1E-32 151.6 12.4 106 22-134 4-113 (113)
2 cd02996 PDI_a_ERp44 PDIa famil 99.9 8.4E-27 1.8E-31 147.7 12.7 108 27-134 1-108 (108)
3 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.3E-26 2.8E-31 145.2 12.1 99 28-133 2-100 (101)
4 KOG0910|consensus 99.9 8.5E-27 1.8E-31 151.3 10.2 106 27-139 43-149 (150)
5 PTZ00102 disulphide isomerase; 99.9 6.3E-26 1.4E-30 176.5 16.2 148 1-153 1-153 (477)
6 KOG0190|consensus 99.9 1.7E-26 3.7E-31 175.8 11.4 128 24-155 22-149 (493)
7 PF00085 Thioredoxin: Thioredo 99.9 1.8E-25 3.8E-30 140.1 13.5 102 29-137 1-103 (103)
8 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.9E-25 4.1E-30 140.6 11.5 100 28-134 2-104 (104)
9 PTZ00443 Thioredoxin domain-co 99.9 5.9E-25 1.3E-29 154.5 14.1 108 26-140 29-141 (224)
10 cd02994 PDI_a_TMX PDIa family, 99.9 1.2E-24 2.7E-29 136.1 12.0 101 27-136 1-101 (101)
11 PHA02278 thioredoxin-like prot 99.9 2.8E-24 6E-29 134.4 11.1 94 33-133 3-100 (103)
12 cd03065 PDI_b_Calsequestrin_N 99.9 5.1E-24 1.1E-28 136.2 11.7 109 24-138 6-119 (120)
13 COG3118 Thioredoxin domain-con 99.9 2.8E-24 6.2E-29 153.3 11.6 108 26-140 22-132 (304)
14 cd03005 PDI_a_ERp46 PDIa famil 99.9 4.8E-24 1E-28 133.5 11.4 102 28-134 1-102 (102)
15 cd02962 TMX2 TMX2 family; comp 99.9 9.8E-24 2.1E-28 140.3 13.1 108 11-124 12-127 (152)
16 PRK09381 trxA thioredoxin; Pro 99.9 1.7E-23 3.7E-28 132.7 13.3 106 26-138 2-108 (109)
17 PRK10996 thioredoxin 2; Provis 99.9 1.8E-23 4E-28 137.9 13.4 106 26-138 34-139 (139)
18 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.4E-23 2.9E-28 133.0 11.9 101 28-134 1-108 (109)
19 cd02963 TRX_DnaJ TRX domain, D 99.9 1.4E-23 2.9E-28 133.6 11.2 100 31-136 8-110 (111)
20 cd02954 DIM1 Dim1 family; Dim1 99.9 1.1E-23 2.3E-28 133.0 9.6 87 34-127 2-90 (114)
21 cd02997 PDI_a_PDIR PDIa family 99.9 2.9E-23 6.4E-28 130.3 11.6 102 28-134 1-104 (104)
22 TIGR01130 ER_PDI_fam protein d 99.9 2.4E-23 5.1E-28 161.2 13.2 124 28-155 2-126 (462)
23 cd02956 ybbN ybbN protein fami 99.9 3.8E-23 8.2E-28 128.2 11.6 94 35-135 1-96 (96)
24 cd03001 PDI_a_P5 PDIa family, 99.9 4.8E-23 1E-27 129.2 12.0 101 28-134 1-102 (103)
25 TIGR01126 pdi_dom protein disu 99.9 8.9E-23 1.9E-27 127.6 11.5 101 32-137 1-101 (102)
26 cd02948 TRX_NDPK TRX domain, T 99.9 1.4E-22 2.9E-27 127.1 12.0 97 32-136 5-101 (102)
27 cd02999 PDI_a_ERp44_like PDIa 99.9 8.3E-23 1.8E-27 127.6 10.3 84 42-134 16-100 (100)
28 cd02993 PDI_a_APS_reductase PD 99.9 1.4E-22 2.9E-27 128.6 11.4 102 28-134 2-109 (109)
29 cd03007 PDI_a_ERp29_N PDIa fam 99.9 8.5E-23 1.9E-27 129.2 10.1 100 28-137 2-115 (116)
30 cd02965 HyaE HyaE family; HyaE 99.9 1.9E-22 4.1E-27 126.5 10.6 99 26-131 9-109 (111)
31 cd02985 TRX_CDSP32 TRX family, 99.9 3.3E-22 7.1E-27 125.6 11.4 95 33-136 2-101 (103)
32 KOG0912|consensus 99.9 4.7E-23 1E-27 146.8 8.4 123 32-155 1-123 (375)
33 cd02998 PDI_a_ERp38 PDIa famil 99.9 5E-22 1.1E-26 124.8 11.3 102 29-134 2-105 (105)
34 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 4.6E-22 1E-26 124.8 11.1 101 28-134 1-104 (104)
35 TIGR01068 thioredoxin thioredo 99.9 1.8E-21 3.9E-26 121.3 12.0 100 32-138 1-101 (101)
36 cd03000 PDI_a_TMX3 PDIa family 99.9 1.6E-21 3.5E-26 122.6 11.8 97 35-137 7-103 (104)
37 cd02961 PDI_a_family Protein D 99.9 2.9E-21 6.3E-26 120.0 10.2 99 31-134 2-101 (101)
38 cd02950 TxlA TRX-like protein 99.9 8.2E-21 1.8E-25 125.6 12.7 99 34-139 10-111 (142)
39 PLN00410 U5 snRNP protein, DIM 99.9 5.9E-21 1.3E-25 124.8 11.7 100 33-139 10-121 (142)
40 cd02989 Phd_like_TxnDC9 Phosdu 99.9 4E-21 8.7E-26 122.4 10.6 90 27-124 4-94 (113)
41 cd02953 DsbDgamma DsbD gamma f 99.9 3.2E-21 7E-26 121.2 9.8 94 35-135 2-104 (104)
42 cd02957 Phd_like Phosducin (Ph 99.9 2.3E-21 5E-26 123.7 8.9 90 27-125 4-96 (113)
43 cd02984 TRX_PICOT TRX domain, 99.9 1.4E-20 3E-25 116.8 10.9 94 33-134 1-96 (97)
44 cd02992 PDI_a_QSOX PDIa family 99.8 3.7E-20 8E-25 118.2 12.3 101 28-131 2-109 (114)
45 KOG0907|consensus 99.8 1.2E-20 2.6E-25 118.2 9.5 86 42-136 19-104 (106)
46 PLN02309 5'-adenylylsulfate re 99.8 2.7E-20 5.8E-25 142.5 13.0 107 26-137 344-456 (457)
47 TIGR00424 APS_reduc 5'-adenyly 99.8 3.2E-20 7E-25 142.2 13.0 108 25-137 349-462 (463)
48 PTZ00102 disulphide isomerase; 99.8 3.5E-20 7.5E-25 144.4 13.3 113 26-142 356-469 (477)
49 cd02949 TRX_NTR TRX domain, no 99.8 4.4E-20 9.5E-25 114.7 11.2 89 40-135 9-97 (97)
50 KOG4277|consensus 99.8 3.7E-21 8E-26 137.4 7.1 113 28-147 29-141 (468)
51 PTZ00051 thioredoxin; Provisio 99.8 6.4E-20 1.4E-24 114.0 10.4 90 33-131 7-96 (98)
52 cd02987 Phd_like_Phd Phosducin 99.8 4.1E-19 8.9E-24 121.1 12.0 102 26-136 61-173 (175)
53 cd02986 DLP Dim1 family, Dim1- 99.8 2.5E-19 5.4E-24 112.4 10.0 82 34-121 2-85 (114)
54 cd02947 TRX_family TRX family; 99.8 5.8E-19 1.3E-23 107.7 10.9 92 35-134 1-92 (93)
55 TIGR01295 PedC_BrcD bacterioci 99.8 6E-19 1.3E-23 113.7 11.3 100 27-135 6-121 (122)
56 KOG0190|consensus 99.8 1.4E-19 2.9E-24 138.4 8.8 107 27-139 366-474 (493)
57 cd02951 SoxW SoxW family; SoxW 99.8 1.2E-18 2.7E-23 113.0 10.7 99 35-140 4-121 (125)
58 cd02975 PfPDO_like_N Pyrococcu 99.8 1.9E-18 4.2E-23 110.1 11.1 96 37-139 15-111 (113)
59 KOG0908|consensus 99.8 3.7E-18 8E-23 118.9 9.9 101 33-142 8-110 (288)
60 cd02988 Phd_like_VIAF Phosduci 99.8 1.6E-17 3.5E-22 114.7 11.1 100 26-136 81-190 (192)
61 TIGR01130 ER_PDI_fam protein d 99.8 1.9E-17 4.1E-22 128.4 12.5 112 26-142 345-458 (462)
62 KOG0191|consensus 99.7 3.2E-17 7E-22 124.7 10.9 114 28-148 30-144 (383)
63 KOG1731|consensus 99.7 9.6E-18 2.1E-22 128.6 7.9 111 25-138 37-153 (606)
64 cd02982 PDI_b'_family Protein 99.7 8E-17 1.7E-21 100.8 10.3 88 43-137 11-102 (103)
65 cd02952 TRP14_like Human TRX-r 99.7 9.2E-17 2E-21 102.5 9.7 94 33-134 8-118 (119)
66 PTZ00062 glutaredoxin; Provisi 99.7 1.9E-16 4.1E-21 109.9 10.6 93 33-142 5-98 (204)
67 TIGR00411 redox_disulf_1 small 99.7 3E-16 6.4E-21 94.3 10.1 81 47-138 2-82 (82)
68 TIGR02738 TrbB type-F conjugat 99.7 9.3E-16 2E-20 102.3 13.3 91 39-137 45-152 (153)
69 cd02959 ERp19 Endoplasmic reti 99.7 1.4E-16 3.1E-21 102.0 6.8 98 36-139 11-114 (117)
70 PRK14018 trifunctional thiored 99.7 2.3E-15 5.1E-20 117.0 13.1 91 41-137 53-172 (521)
71 TIGR02187 GlrX_arch Glutaredox 99.6 1.2E-15 2.7E-20 107.5 9.6 90 44-138 19-111 (215)
72 PRK03147 thiol-disulfide oxido 99.6 1.9E-14 4.1E-19 98.1 15.0 103 29-137 46-171 (173)
73 PRK00293 dipZ thiol:disulfide 99.6 9E-15 1.9E-19 116.0 14.9 103 29-138 454-570 (571)
74 KOG0191|consensus 99.6 4E-15 8.6E-20 113.3 10.8 109 28-141 145-255 (383)
75 TIGR02187 GlrX_arch Glutaredox 99.6 5.8E-15 1.3E-19 104.2 10.2 96 30-136 118-214 (215)
76 PRK15412 thiol:disulfide inter 99.6 3E-14 6.5E-19 98.3 13.1 89 42-140 66-178 (185)
77 cd02955 SSP411 TRX domain, SSP 99.6 1E-14 2.3E-19 93.9 9.9 97 33-136 4-117 (124)
78 PF13098 Thioredoxin_2: Thiore 99.6 7.7E-15 1.7E-19 93.2 8.2 89 42-134 3-112 (112)
79 PRK11509 hydrogenase-1 operon 99.6 4.3E-14 9.3E-19 91.3 11.4 109 28-142 18-128 (132)
80 TIGR02740 TraF-like TraF-like 99.6 6.2E-14 1.3E-18 101.8 11.3 89 43-139 165-265 (271)
81 PHA02125 thioredoxin-like prot 99.6 5.3E-14 1.1E-18 83.2 8.7 70 48-133 2-72 (75)
82 TIGR00385 dsbE periplasmic pro 99.5 3.6E-13 7.8E-18 92.0 13.5 88 42-139 61-172 (173)
83 PF01216 Calsequestrin: Calseq 99.5 6.2E-14 1.4E-18 102.2 10.1 124 25-156 32-162 (383)
84 TIGR00412 redox_disulf_2 small 99.5 1.1E-13 2.4E-18 82.0 8.6 72 49-134 3-75 (76)
85 cd03010 TlpA_like_DsbE TlpA-li 99.5 1.5E-13 3.3E-18 89.1 9.6 86 36-130 17-126 (127)
86 PRK13728 conjugal transfer pro 99.5 9.1E-13 2E-17 89.7 13.1 85 48-140 73-173 (181)
87 cd03009 TryX_like_TryX_NRX Try 99.5 2.7E-13 5.8E-18 88.5 10.1 73 43-118 17-114 (131)
88 cd03008 TryX_like_RdCVF Trypar 99.5 3.4E-13 7.4E-18 89.2 9.8 76 43-118 24-127 (146)
89 KOG0914|consensus 99.5 1E-13 2.2E-18 95.1 7.0 96 20-121 117-221 (265)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 6E-13 1.3E-17 85.8 10.2 93 31-132 7-120 (123)
91 TIGR01626 ytfJ_HI0045 conserve 99.5 1.1E-12 2.3E-17 89.8 11.8 83 42-134 57-176 (184)
92 cd02958 UAS UAS family; UAS is 99.5 1.7E-12 3.6E-17 82.8 10.5 94 39-139 12-112 (114)
93 PF13905 Thioredoxin_8: Thiore 99.5 1.7E-12 3.6E-17 80.0 10.1 67 44-114 1-92 (95)
94 cd02964 TryX_like_family Trypa 99.4 1.3E-12 2.9E-17 85.4 9.4 73 43-118 16-114 (132)
95 COG4232 Thiol:disulfide interc 99.4 1.8E-12 4E-17 100.6 11.2 103 30-138 457-568 (569)
96 PLN02919 haloacid dehalogenase 99.4 1.1E-12 2.4E-17 110.4 10.8 91 43-139 419-537 (1057)
97 cd02973 TRX_GRX_like Thioredox 99.4 8.2E-13 1.8E-17 76.3 7.0 57 47-110 2-58 (67)
98 cd02966 TlpA_like_family TlpA- 99.4 2.3E-12 4.9E-17 81.3 9.3 86 32-123 7-116 (116)
99 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 8.1E-12 1.8E-16 76.1 8.7 76 43-130 11-86 (89)
100 cd02960 AGR Anterior Gradient 99.4 5.7E-12 1.2E-16 81.4 8.3 79 38-124 17-99 (130)
101 KOG0913|consensus 99.3 5.9E-13 1.3E-17 92.3 2.3 104 26-138 23-126 (248)
102 smart00594 UAS UAS domain. 99.3 4.2E-11 9E-16 77.3 10.1 96 32-134 11-121 (122)
103 COG2143 Thioredoxin-related pr 99.3 1.4E-10 3E-15 75.9 11.9 97 36-139 34-150 (182)
104 cd02967 mauD Methylamine utili 99.3 2.7E-11 5.9E-16 77.0 8.5 40 43-88 20-59 (114)
105 PTZ00056 glutathione peroxidas 99.3 3.6E-11 7.8E-16 83.8 9.3 92 43-140 38-180 (199)
106 PLN02399 phospholipid hydroper 99.3 7.5E-11 1.6E-15 83.9 10.6 91 43-139 98-235 (236)
107 cd03012 TlpA_like_DipZ_like Tl 99.3 5.4E-11 1.2E-15 77.1 9.0 76 43-124 22-125 (126)
108 PF08534 Redoxin: Redoxin; In 99.3 1.7E-10 3.7E-15 76.5 11.5 89 32-126 16-136 (146)
109 PF13899 Thioredoxin_7: Thiore 99.3 1.9E-11 4.1E-16 73.4 6.0 69 37-112 10-81 (82)
110 PF07912 ERp29_N: ERp29, N-ter 99.2 1.8E-09 3.8E-14 68.2 13.1 109 26-139 3-120 (126)
111 TIGR02661 MauD methylamine deh 99.2 3.5E-10 7.6E-15 78.3 10.5 87 42-137 72-178 (189)
112 PLN02412 probable glutathione 99.2 3.3E-10 7.2E-15 76.9 9.5 91 43-139 28-165 (167)
113 TIGR02540 gpx7 putative glutat 99.1 1E-09 2.2E-14 73.5 10.3 89 43-137 21-152 (153)
114 COG0526 TrxA Thiol-disulfide i 99.1 1.2E-09 2.6E-14 68.6 9.0 83 44-133 32-119 (127)
115 cd00340 GSH_Peroxidase Glutath 99.1 7.5E-10 1.6E-14 74.0 8.0 84 43-133 21-151 (152)
116 cd02969 PRX_like1 Peroxiredoxi 99.0 7.3E-09 1.6E-13 70.5 11.7 98 43-146 24-160 (171)
117 PF02114 Phosducin: Phosducin; 99.0 5E-09 1.1E-13 75.9 10.6 105 26-139 124-239 (265)
118 KOG1672|consensus 99.0 1.2E-09 2.5E-14 74.1 6.0 91 26-124 65-156 (211)
119 cd01659 TRX_superfamily Thiore 98.9 1.1E-08 2.3E-13 57.3 7.3 60 48-114 1-63 (69)
120 PF13848 Thioredoxin_6: Thiore 98.9 5.8E-08 1.3E-12 66.5 12.2 104 27-136 77-184 (184)
121 PTZ00256 glutathione peroxidas 98.9 2.6E-08 5.7E-13 68.6 9.9 91 43-139 39-182 (183)
122 KOG2603|consensus 98.9 7.6E-08 1.6E-12 69.9 12.4 117 24-140 37-168 (331)
123 KOG2501|consensus 98.9 1.1E-08 2.5E-13 67.6 7.4 72 43-117 32-129 (157)
124 cd03017 PRX_BCP Peroxiredoxin 98.9 2.9E-08 6.2E-13 65.2 9.4 85 43-133 22-138 (140)
125 TIGR02200 GlrX_actino Glutared 98.9 1.3E-08 2.8E-13 59.9 6.8 69 48-134 2-75 (77)
126 TIGR02196 GlrX_YruB Glutaredox 98.9 1.8E-08 3.8E-13 58.6 7.2 69 48-135 2-74 (74)
127 PF13728 TraF: F plasmid trans 98.9 4.4E-08 9.5E-13 69.1 10.4 83 43-133 119-213 (215)
128 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 6.3E-08 1.4E-12 62.1 9.5 70 43-117 24-121 (124)
129 cd02970 PRX_like2 Peroxiredoxi 98.8 8.4E-08 1.8E-12 63.5 9.8 47 43-94 23-69 (149)
130 PF13192 Thioredoxin_3: Thiore 98.8 8.4E-08 1.8E-12 56.6 8.2 73 49-135 3-76 (76)
131 cd02991 UAS_ETEA UAS family, E 98.8 2.2E-07 4.8E-12 59.3 10.5 92 40-139 13-114 (116)
132 PF03190 Thioredox_DsbH: Prote 98.8 7.1E-08 1.5E-12 64.6 8.5 89 23-117 16-116 (163)
133 PF06110 DUF953: Eukaryotic pr 98.7 1.8E-07 4E-12 59.6 8.8 84 42-135 17-118 (119)
134 PF11009 DUF2847: Protein of u 98.7 4.2E-07 9.1E-12 56.5 9.6 92 33-130 6-104 (105)
135 cd03015 PRX_Typ2cys Peroxiredo 98.7 3.5E-07 7.6E-12 62.4 10.0 89 43-137 28-156 (173)
136 cd03072 PDI_b'_ERp44 PDIb' fam 98.7 5.9E-07 1.3E-11 56.9 10.3 106 29-139 1-109 (111)
137 PF07449 HyaE: Hydrogenase-1 e 98.7 1.4E-07 3E-12 58.9 6.9 96 26-129 8-106 (107)
138 TIGR02739 TraF type-F conjugat 98.7 4.8E-07 1E-11 65.1 10.4 88 43-139 149-249 (256)
139 TIGR03137 AhpC peroxiredoxin. 98.6 5.3E-07 1.1E-11 62.4 10.0 88 43-136 30-154 (187)
140 PRK09437 bcp thioredoxin-depen 98.6 9.2E-07 2E-11 59.1 10.4 83 43-131 29-146 (154)
141 KOG3425|consensus 98.6 3.8E-07 8.3E-12 57.2 7.3 73 35-113 13-104 (128)
142 TIGR02180 GRX_euk Glutaredoxin 98.6 1.6E-07 3.5E-12 56.2 5.6 60 48-117 1-65 (84)
143 PRK00522 tpx lipid hydroperoxi 98.6 9.1E-07 2E-11 60.1 9.8 69 43-118 43-145 (167)
144 PRK10606 btuE putative glutath 98.6 6.4E-07 1.4E-11 61.6 8.8 43 43-91 24-66 (183)
145 PRK13703 conjugal pilus assemb 98.5 1.2E-06 2.5E-11 62.8 9.9 90 43-139 142-242 (248)
146 PRK11200 grxA glutaredoxin 1; 98.5 1.2E-06 2.6E-11 52.8 8.3 77 47-139 2-84 (85)
147 PRK10877 protein disulfide iso 98.5 9.1E-07 2E-11 63.2 9.0 82 44-137 107-230 (232)
148 cd02981 PDI_b_family Protein D 98.5 1.8E-06 4E-11 53.0 9.3 89 35-136 8-96 (97)
149 cd02971 PRX_family Peroxiredox 98.5 1.3E-06 2.7E-11 57.3 8.5 77 43-125 21-130 (140)
150 PF14595 Thioredoxin_9: Thiore 98.5 8.5E-07 1.8E-11 57.6 7.0 80 32-118 28-112 (129)
151 cd03018 PRX_AhpE_like Peroxire 98.5 3.7E-06 8E-11 55.7 10.2 76 43-124 27-133 (149)
152 cd02968 SCO SCO (an acronym fo 98.5 1.5E-06 3.3E-11 57.0 8.3 48 43-92 21-69 (142)
153 cd03014 PRX_Atyp2cys Peroxired 98.4 2.6E-06 5.5E-11 56.2 9.0 73 43-123 25-128 (143)
154 PRK13190 putative peroxiredoxi 98.4 4.3E-06 9.4E-11 58.5 9.7 90 43-138 26-154 (202)
155 cd03073 PDI_b'_ERp72_ERp57 PDI 98.4 6.6E-06 1.4E-10 52.1 9.6 100 30-137 2-110 (111)
156 PRK10382 alkyl hydroperoxide r 98.4 8.4E-06 1.8E-10 56.3 10.6 89 43-137 30-155 (187)
157 TIGR03143 AhpF_homolog putativ 98.4 3.3E-06 7.2E-11 67.6 9.6 95 28-134 459-554 (555)
158 cd03067 PDI_b_PDIR_N PDIb fami 98.4 5.5E-06 1.2E-10 50.6 8.2 95 34-136 9-110 (112)
159 KOG0911|consensus 98.4 3E-07 6.5E-12 63.9 3.1 83 42-132 15-97 (227)
160 PRK15317 alkyl hydroperoxide r 98.4 4.4E-06 9.6E-11 66.3 10.0 100 28-139 99-199 (517)
161 cd02983 P5_C P5 family, C-term 98.4 3.7E-05 8E-10 50.1 12.5 109 28-142 3-119 (130)
162 cd02976 NrdH NrdH-redoxin (Nrd 98.3 4.6E-06 1E-10 48.1 7.0 67 48-133 2-72 (73)
163 PRK15000 peroxidase; Provision 98.3 1.1E-05 2.3E-10 56.4 9.8 89 43-137 33-161 (200)
164 cd03016 PRX_1cys Peroxiredoxin 98.3 1.4E-05 3E-10 56.0 10.3 86 46-137 28-153 (203)
165 TIGR02183 GRXA Glutaredoxin, G 98.2 1E-05 2.3E-10 48.8 7.6 75 48-138 2-82 (86)
166 PRK10954 periplasmic protein d 98.2 4.2E-05 9.1E-10 53.7 11.3 30 44-73 37-69 (207)
167 cd03020 DsbA_DsbC_DsbG DsbA fa 98.2 4.7E-06 1E-10 58.0 6.4 78 44-134 77-197 (197)
168 PF00462 Glutaredoxin: Glutare 98.2 1.2E-05 2.5E-10 45.0 6.8 54 48-115 1-58 (60)
169 KOG3414|consensus 98.2 3.1E-05 6.7E-10 49.2 9.1 97 35-137 12-119 (142)
170 PF13848 Thioredoxin_6: Thiore 98.2 4.7E-05 1E-09 52.0 10.6 77 61-147 7-84 (184)
171 PF05768 DUF836: Glutaredoxin- 98.2 1.7E-05 3.8E-10 47.3 7.2 80 47-135 1-81 (81)
172 PRK11657 dsbG disulfide isomer 98.2 4.2E-05 9.1E-10 55.3 10.3 83 44-135 117-249 (251)
173 TIGR03140 AhpF alkyl hydropero 98.1 2.5E-05 5.5E-10 62.0 10.0 100 28-139 100-200 (515)
174 PRK13189 peroxiredoxin; Provis 98.1 4.9E-05 1.1E-09 54.0 10.1 89 43-137 34-162 (222)
175 PF02966 DIM1: Mitosis protein 98.1 0.00013 2.8E-09 46.9 10.4 95 35-136 9-115 (133)
176 PRK13599 putative peroxiredoxi 98.1 7.1E-05 1.5E-09 52.9 10.0 89 44-137 28-155 (215)
177 PTZ00137 2-Cys peroxiredoxin; 98.1 9.9E-05 2.2E-09 53.5 10.7 90 43-137 97-224 (261)
178 TIGR02190 GlrX-dom Glutaredoxi 98.1 3.4E-05 7.4E-10 45.7 7.1 59 45-117 7-68 (79)
179 cd03023 DsbA_Com1_like DsbA fa 98.1 0.00012 2.6E-09 48.3 10.4 31 43-73 4-34 (154)
180 cd03419 GRX_GRXh_1_2_like Glut 98.0 1.9E-05 4.1E-10 46.9 5.3 58 48-117 2-64 (82)
181 PRK13191 putative peroxiredoxi 97.9 0.00017 3.7E-09 51.0 10.1 89 43-137 32-160 (215)
182 PF13462 Thioredoxin_4: Thiore 97.9 0.0005 1.1E-08 45.9 11.2 84 43-136 11-162 (162)
183 TIGR03143 AhpF_homolog putativ 97.9 0.00014 3.1E-09 58.3 9.7 90 43-139 365-455 (555)
184 PTZ00253 tryparedoxin peroxida 97.8 0.00037 8E-09 48.6 9.9 89 43-137 35-163 (199)
185 PRK10329 glutaredoxin-like pro 97.8 0.00045 9.7E-09 41.2 8.5 72 48-138 3-77 (81)
186 PHA03050 glutaredoxin; Provisi 97.8 0.00013 2.8E-09 45.9 6.3 67 38-117 7-80 (108)
187 TIGR02189 GlrX-like_plant Glut 97.8 0.00012 2.5E-09 45.4 5.8 64 39-118 3-73 (99)
188 TIGR02194 GlrX_NrdH Glutaredox 97.7 9.3E-05 2E-09 43.0 4.9 66 49-132 2-70 (72)
189 cd03019 DsbA_DsbA DsbA family, 97.7 0.00045 9.9E-09 46.9 8.6 31 43-73 14-44 (178)
190 cd03029 GRX_hybridPRX5 Glutare 97.7 0.00043 9.3E-09 40.1 7.2 66 48-134 3-71 (72)
191 cd02066 GRX_family Glutaredoxi 97.7 0.0002 4.4E-09 40.8 5.7 57 48-118 2-62 (72)
192 KOG3171|consensus 97.7 0.00041 8.9E-09 48.3 7.8 104 27-139 138-252 (273)
193 TIGR02181 GRX_bact Glutaredoxi 97.6 0.00015 3.1E-09 42.8 4.6 56 48-117 1-60 (79)
194 cd03418 GRX_GRXb_1_3_like Glut 97.5 0.00034 7.5E-09 40.6 5.5 56 48-117 2-62 (75)
195 cd02972 DsbA_family DsbA famil 97.5 0.00067 1.5E-08 40.9 6.7 59 48-112 1-91 (98)
196 cd03027 GRX_DEP Glutaredoxin ( 97.5 0.00049 1.1E-08 39.9 5.6 56 48-117 3-62 (73)
197 cd03066 PDI_b_Calsequestrin_mi 97.5 0.004 8.7E-08 38.6 9.8 94 30-137 3-100 (102)
198 cd03069 PDI_b_ERp57 PDIb famil 97.4 0.0038 8.1E-08 38.9 9.0 91 33-137 7-103 (104)
199 KOG3170|consensus 97.4 0.0015 3.2E-08 45.1 7.4 102 26-138 90-201 (240)
200 COG0695 GrxC Glutaredoxin and 97.3 0.00089 1.9E-08 39.8 5.3 51 48-110 3-59 (80)
201 TIGR00365 monothiol glutaredox 97.3 0.0018 3.8E-08 39.9 6.7 66 37-117 5-78 (97)
202 PF13743 Thioredoxin_5: Thiore 97.1 0.0038 8.2E-08 42.8 7.5 25 50-74 2-26 (176)
203 PF00837 T4_deiodinase: Iodoth 97.0 0.011 2.4E-07 42.1 9.2 52 23-74 78-132 (237)
204 PRK10638 glutaredoxin 3; Provi 97.0 0.0034 7.3E-08 37.4 5.5 56 48-117 4-63 (83)
205 cd03028 GRX_PICOT_like Glutare 96.9 0.0049 1.1E-07 37.4 6.1 64 39-117 3-74 (90)
206 KOG1752|consensus 96.8 0.011 2.4E-07 36.8 7.2 67 37-117 7-78 (104)
207 PRK10824 glutaredoxin-4; Provi 96.8 0.0054 1.2E-07 39.0 5.5 66 37-117 8-81 (115)
208 KOG2640|consensus 96.8 0.00059 1.3E-08 50.0 1.2 88 43-139 75-163 (319)
209 cd02974 AhpF_NTD_N Alkyl hydro 96.6 0.066 1.4E-06 32.8 9.5 75 43-136 18-92 (94)
210 PTZ00062 glutaredoxin; Provisi 96.4 0.014 3.1E-07 40.9 6.3 66 37-117 106-179 (204)
211 PRK12759 bifunctional gluaredo 96.2 0.013 2.7E-07 45.6 5.7 51 48-110 4-66 (410)
212 COG1331 Highly conserved prote 96.2 0.025 5.4E-07 46.0 7.4 88 24-117 23-122 (667)
213 cd03068 PDI_b_ERp72 PDIb famil 95.9 0.22 4.7E-06 31.2 9.4 91 33-136 7-106 (107)
214 cd03013 PRX5_like Peroxiredoxi 95.3 0.056 1.2E-06 36.2 5.3 61 37-102 23-88 (155)
215 cd02978 KaiB_like KaiB-like fa 95.2 0.13 2.8E-06 29.8 5.8 60 47-111 3-62 (72)
216 PF01323 DSBA: DSBA-like thior 94.8 0.8 1.7E-05 31.2 10.3 27 47-73 1-27 (193)
217 PRK15317 alkyl hydroperoxide r 94.8 0.34 7.3E-06 38.8 9.2 77 45-139 19-95 (517)
218 PF13417 GST_N_3: Glutathione 94.6 0.45 9.7E-06 27.4 7.9 73 50-141 1-74 (75)
219 cd03074 PDI_b'_Calsequestrin_C 94.5 0.67 1.4E-05 29.0 9.5 91 44-138 20-120 (120)
220 TIGR03140 AhpF alkyl hydropero 94.3 0.4 8.7E-06 38.4 8.5 78 44-139 19-96 (515)
221 cd03031 GRX_GRX_like Glutaredo 94.1 0.23 5E-06 33.0 5.7 56 48-117 2-71 (147)
222 cd03040 GST_N_mPGES2 GST_N fam 94.0 0.39 8.6E-06 27.6 6.1 75 48-138 2-76 (77)
223 COG1651 DsbG Protein-disulfide 93.9 0.87 1.9E-05 32.6 8.9 28 45-72 85-112 (244)
224 TIGR02654 circ_KaiB circadian 93.6 0.42 9.1E-06 28.7 5.7 74 46-126 4-77 (87)
225 PRK09301 circadian clock prote 93.5 0.42 9.2E-06 29.6 5.7 75 45-126 6-80 (103)
226 COG1225 Bcp Peroxiredoxin [Pos 93.0 0.46 9.9E-06 32.0 5.8 89 43-137 29-155 (157)
227 cd03060 GST_N_Omega_like GST_N 93.0 0.38 8.2E-06 27.3 4.9 57 49-116 2-59 (71)
228 cd02990 UAS_FAF1 UAS family, F 92.4 2.1 4.5E-05 28.1 10.5 91 41-138 18-133 (136)
229 cd03037 GST_N_GRX2 GST_N famil 92.3 0.58 1.2E-05 26.5 5.0 50 50-109 3-52 (71)
230 PF06053 DUF929: Domain of unk 91.8 3.2 6.9E-05 30.2 9.1 34 40-73 54-87 (249)
231 COG4545 Glutaredoxin-related p 91.5 0.4 8.6E-06 27.9 3.5 56 49-117 5-76 (85)
232 cd03041 GST_N_2GST_N GST_N fam 91.5 0.44 9.6E-06 27.6 3.9 70 49-137 3-76 (77)
233 KOG2792|consensus 91.3 2.8 6.1E-05 30.5 8.4 96 43-140 138-277 (280)
234 PHA03075 glutaredoxin-like pro 91.1 0.47 1E-05 30.0 3.8 29 45-73 2-30 (123)
235 COG0386 BtuE Glutathione perox 91.0 3.4 7.4E-05 27.7 9.2 105 28-139 9-161 (162)
236 COG1999 Uncharacterized protei 90.8 4.4 9.4E-05 28.6 12.1 101 36-139 59-205 (207)
237 PF09822 ABC_transp_aux: ABC-t 90.5 5.4 0.00012 29.1 11.1 113 26-140 6-144 (271)
238 TIGR02742 TrbC_Ftype type-F co 90.3 0.86 1.9E-05 29.6 4.7 46 92-138 59-115 (130)
239 COG3019 Predicted metal-bindin 90.0 2.1 4.6E-05 28.1 6.2 76 47-138 27-104 (149)
240 KOG2507|consensus 89.7 5.8 0.00013 31.0 9.2 90 42-138 16-111 (506)
241 cd02977 ArsC_family Arsenate R 89.5 0.39 8.5E-06 29.7 2.6 77 49-137 2-86 (105)
242 cd00570 GST_N_family Glutathio 88.8 0.85 1.9E-05 24.9 3.6 51 50-110 3-55 (71)
243 cd03051 GST_N_GTT2_like GST_N 88.7 1.4 2.9E-05 24.8 4.4 52 49-110 2-57 (74)
244 PF02630 SCO1-SenC: SCO1/SenC; 88.1 5.2 0.00011 27.2 7.6 59 30-91 38-97 (174)
245 COG0278 Glutaredoxin-related p 88.1 2.7 5.9E-05 26.0 5.4 71 36-117 7-82 (105)
246 PF07689 KaiB: KaiB domain; I 88.1 0.28 6E-06 29.2 1.1 56 51-111 3-58 (82)
247 cd03059 GST_N_SspA GST_N famil 88.1 0.99 2.2E-05 25.5 3.5 69 49-136 2-71 (73)
248 cd03035 ArsC_Yffb Arsenate Red 87.4 0.67 1.4E-05 28.9 2.6 33 49-93 2-34 (105)
249 COG2761 FrnE Predicted dithiol 87.3 1.6 3.4E-05 31.2 4.7 45 95-144 175-219 (225)
250 COG3634 AhpF Alkyl hydroperoxi 86.7 4.5 9.7E-05 31.2 7.0 97 28-136 99-196 (520)
251 cd03036 ArsC_like Arsenate Red 86.7 0.78 1.7E-05 28.8 2.7 77 49-137 2-87 (111)
252 PRK01655 spxA transcriptional 86.4 1 2.2E-05 29.3 3.2 35 48-94 2-36 (131)
253 PF09673 TrbC_Ftype: Type-F co 85.4 4.3 9.4E-05 25.6 5.6 45 61-113 36-80 (113)
254 cd03045 GST_N_Delta_Epsilon GS 84.3 2.8 6E-05 23.6 4.1 51 49-109 2-56 (74)
255 TIGR01617 arsC_related transcr 83.3 1.3 2.9E-05 28.0 2.6 34 49-94 2-35 (117)
256 KOG0912|consensus 83.1 8.8 0.00019 28.9 7.0 105 28-139 211-320 (375)
257 PRK12559 transcriptional regul 82.6 1.9 4.1E-05 28.0 3.2 34 48-93 2-35 (131)
258 cd03032 ArsC_Spx Arsenate Redu 82.5 1.9 4.2E-05 27.1 3.2 76 49-137 3-86 (115)
259 PF04592 SelP_N: Selenoprotein 82.3 5.2 0.00011 28.7 5.4 49 43-93 25-73 (238)
260 cd03055 GST_N_Omega GST_N fami 82.0 5.4 0.00012 23.7 4.9 54 47-110 18-72 (89)
261 PF00255 GSHPx: Glutathione pe 81.1 9.4 0.0002 24.0 5.8 58 30-93 7-64 (108)
262 KOG1422|consensus 80.1 19 0.0004 25.6 7.5 68 55-141 20-88 (221)
263 COG3531 Predicted protein-disu 78.7 4.6 0.0001 28.3 4.1 45 94-139 164-210 (212)
264 TIGR03521 GldG gliding-associa 78.6 35 0.00076 27.9 12.0 80 24-106 27-116 (552)
265 cd03062 TRX_Fd_Sucrase TRX-lik 78.1 13 0.00028 22.7 8.0 71 55-140 15-85 (97)
266 KOG4277|consensus 78.0 21 0.00045 26.9 7.5 92 29-137 136-230 (468)
267 PRK13344 spxA transcriptional 77.8 3.3 7.1E-05 27.0 3.1 34 48-93 2-35 (132)
268 COG0821 gcpE 1-hydroxy-2-methy 74.3 8 0.00017 29.4 4.6 84 56-140 264-353 (361)
269 cd03024 DsbA_FrnE DsbA family, 71.1 4.9 0.00011 27.6 2.9 35 95-134 166-200 (201)
270 cd03033 ArsC_15kD Arsenate Red 70.7 6.8 0.00015 24.7 3.2 34 48-93 2-35 (113)
271 cd03025 DsbA_FrnE_like DsbA fa 70.4 8.6 0.00019 26.1 3.9 26 48-73 3-28 (193)
272 PF04551 GcpE: GcpE protein; 69.8 7.3 0.00016 29.8 3.6 81 56-137 271-358 (359)
273 cd03061 GST_N_CLIC GST_N famil 69.4 23 0.00049 21.5 6.5 69 53-140 19-88 (91)
274 cd03056 GST_N_4 GST_N family, 69.3 16 0.00034 20.2 4.4 52 49-110 2-57 (73)
275 PF06953 ArsD: Arsenical resis 67.6 26 0.00057 22.6 5.4 72 63-140 23-104 (123)
276 cd03022 DsbA_HCCA_Iso DsbA fam 67.3 8.3 0.00018 26.2 3.3 34 95-134 158-191 (192)
277 PRK13730 conjugal transfer pil 66.0 18 0.00038 25.6 4.6 42 93-136 151-192 (212)
278 PRK00366 ispG 4-hydroxy-3-meth 65.9 22 0.00048 27.3 5.5 81 56-137 271-356 (360)
279 cd03052 GST_N_GDAP1 GST_N fami 65.3 23 0.0005 20.1 4.6 55 49-115 2-60 (73)
280 KOG1651|consensus 63.9 44 0.00095 22.8 7.8 46 42-92 32-77 (171)
281 COG1393 ArsC Arsenate reductas 63.7 11 0.00023 24.0 3.1 23 48-70 3-25 (117)
282 PF08806 Sep15_SelM: Sep15/Sel 63.5 17 0.00037 21.3 3.7 35 104-138 41-76 (78)
283 PF01216 Calsequestrin: Calseq 63.2 68 0.0015 24.8 11.4 114 27-144 249-374 (383)
284 PF04134 DUF393: Protein of un 62.7 9.4 0.0002 23.7 2.7 57 51-115 2-61 (114)
285 PF04908 SH3BGR: SH3-binding, 59.9 36 0.00077 21.0 4.8 80 49-134 3-96 (99)
286 TIGR00762 DegV EDD domain prot 59.6 11 0.00024 27.7 2.9 60 90-152 9-68 (275)
287 cd03034 ArsC_ArsC Arsenate Red 58.5 12 0.00026 23.4 2.7 33 49-93 2-34 (112)
288 COG5429 Uncharacterized secret 58.2 55 0.0012 23.8 6.0 79 47-137 44-140 (261)
289 TIGR00014 arsC arsenate reduct 57.2 13 0.00028 23.4 2.6 74 49-137 2-86 (114)
290 PF09776 Mitoc_L55: Mitochondr 56.2 9.7 0.00021 24.2 1.9 23 101-123 41-63 (116)
291 cd03025 DsbA_FrnE_like DsbA fa 55.7 9.6 0.00021 25.9 2.0 21 95-115 160-180 (193)
292 cd03053 GST_N_Phi GST_N family 54.3 37 0.00081 18.9 4.6 69 48-135 2-74 (76)
293 COG3411 Ferredoxin [Energy pro 53.9 31 0.00066 19.5 3.4 30 105-139 17-46 (64)
294 TIGR01616 nitro_assoc nitrogen 52.5 24 0.00053 22.7 3.3 22 47-68 2-23 (126)
295 PF02645 DegV: Uncharacterised 51.5 11 0.00025 27.7 1.9 59 91-153 11-70 (280)
296 PF05887 Trypan_PARP: Procycli 51.1 5 0.00011 26.1 0.0 19 1-19 1-19 (143)
297 PHA02151 hypothetical protein 51.0 9.4 0.0002 25.7 1.2 17 41-57 200-216 (217)
298 PF06480 FtsH_ext: FtsH Extrac 51.0 23 0.0005 21.3 3.0 32 23-54 21-52 (110)
299 PF11287 DUF3088: Protein of u 50.6 28 0.0006 22.0 3.2 75 56-138 24-107 (112)
300 KOG1364|consensus 50.4 48 0.001 25.4 4.9 60 81-141 131-192 (356)
301 KOG2244|consensus 49.6 22 0.00048 29.1 3.3 105 28-138 96-219 (786)
302 PRK09481 sspA stringent starva 49.2 87 0.0019 21.7 7.0 54 46-109 9-63 (211)
303 KOG1731|consensus 48.5 34 0.00074 28.1 4.2 57 81-139 214-270 (606)
304 PRK10853 putative reductase; P 48.4 25 0.00054 22.3 2.9 34 48-93 2-35 (118)
305 COG5314 Conjugal transfer/entr 48.0 39 0.00084 24.4 3.9 39 1-39 6-44 (252)
306 cd03049 GST_N_3 GST_N family, 45.6 53 0.0011 18.2 4.0 52 50-109 3-55 (73)
307 PF10731 Anophelin: Thrombin i 45.5 25 0.00054 19.5 2.1 35 4-38 3-39 (65)
308 PRK09810 entericidin A; Provis 44.6 38 0.00083 17.3 2.6 17 1-17 1-17 (41)
309 PF11317 DUF3119: Protein of u 44.3 65 0.0014 20.6 4.2 35 103-138 81-115 (116)
310 PRK10026 arsenate reductase; P 43.6 36 0.00078 22.5 3.1 21 48-68 4-24 (141)
311 TIGR00612 ispG_gcpE 1-hydroxy- 43.3 25 0.00055 26.8 2.6 67 56-123 262-334 (346)
312 PF08139 LPAM_1: Prokaryotic m 43.0 35 0.00076 15.4 2.1 15 3-17 7-21 (25)
313 PF03960 ArsC: ArsC family; I 42.8 27 0.00058 21.6 2.4 71 51-137 1-83 (110)
314 KOG0911|consensus 39.8 96 0.0021 22.3 4.9 63 43-117 137-205 (227)
315 PF07700 HNOB: Heme NO binding 39.8 1.1E+02 0.0024 20.6 5.2 44 43-92 126-170 (171)
316 cd03030 GRX_SH3BGR Glutaredoxi 38.6 90 0.002 18.8 5.8 38 56-98 9-46 (92)
317 PRK13617 psbV cytochrome c-550 37.0 29 0.00063 23.7 1.9 10 53-62 67-76 (170)
318 KOG0833|consensus 36.5 25 0.00053 24.1 1.5 17 53-69 102-118 (173)
319 COG5510 Predicted small secret 36.1 67 0.0014 16.6 2.7 8 1-8 1-8 (44)
320 cd01767 UBX UBX (ubiquitin reg 35.9 59 0.0013 18.6 3.0 29 111-139 9-37 (77)
321 PF10717 ODV-E18: Occlusion-de 35.4 67 0.0015 19.2 3.0 12 11-22 36-47 (85)
322 COG3011 Predicted thiol-disulf 35.2 1.3E+02 0.0029 19.8 5.3 65 43-115 5-71 (137)
323 PRK10081 entericidin B membran 35.2 69 0.0015 16.9 2.8 8 1-8 1-8 (48)
324 cd04436 DEP_fRgd2 DEP (Disheve 34.8 27 0.00057 20.9 1.3 30 120-154 25-54 (84)
325 COG4604 CeuD ABC-type enteroch 34.7 1.4E+02 0.003 21.5 5.0 49 56-118 168-216 (252)
326 COG4759 Uncharacterized protei 33.9 2.1E+02 0.0045 21.7 6.0 79 45-139 132-212 (316)
327 PRK10387 glutaredoxin 2; Provi 33.9 1.5E+02 0.0034 20.2 6.4 20 50-69 3-22 (210)
328 PF01456 Mucin: Mucin-like gly 31.6 44 0.00095 21.7 2.1 15 1-15 1-15 (143)
329 TIGR03765 ICE_PFL_4695 integra 31.4 41 0.00088 21.1 1.8 16 94-109 83-98 (105)
330 KOG4052|consensus 31.2 1.2E+02 0.0026 20.7 4.0 23 50-72 30-52 (190)
331 cd03058 GST_N_Tau GST_N family 31.0 1E+02 0.0022 17.1 6.2 68 50-136 3-72 (74)
332 TIGR03042 PS_II_psbQ_bact phot 30.9 84 0.0018 20.9 3.3 37 4-40 2-38 (142)
333 cd03044 GST_N_EF1Bgamma GST_N 30.7 1E+02 0.0022 17.2 4.2 51 50-110 3-56 (75)
334 PRK13791 lysozyme inhibitor; P 30.5 66 0.0014 20.4 2.7 21 1-21 1-21 (113)
335 COG1307 DegV Uncharacterized p 30.3 68 0.0015 23.8 3.1 61 89-152 10-70 (282)
336 cd03021 DsbA_GSTK DsbA family, 29.9 88 0.0019 21.7 3.6 36 97-134 172-208 (209)
337 PF09363 XFP_C: XFP C-terminal 29.7 44 0.00095 23.6 1.9 29 25-53 80-108 (203)
338 PF11072 DUF2859: Protein of u 29.5 42 0.00091 22.2 1.7 16 94-109 121-136 (142)
339 COG1125 OpuBA ABC-type proline 29.1 2.5E+02 0.0054 21.1 5.7 98 28-141 132-239 (309)
340 PF00879 Defensin_propep: Defe 27.5 80 0.0017 17.0 2.3 18 3-20 1-18 (52)
341 PRK13620 psbV cytochrome c-550 27.4 15 0.00032 26.0 -0.7 9 53-61 112-120 (215)
342 PF13778 DUF4174: Domain of un 27.3 1.7E+02 0.0036 18.5 8.8 92 38-136 4-110 (118)
343 COG4312 Uncharacterized protei 26.2 2.4E+02 0.0052 20.4 5.0 50 35-89 64-119 (247)
344 PRK14864 putative biofilm stre 26.2 1.3E+02 0.0028 18.8 3.4 21 1-22 3-23 (104)
345 PF05984 Cytomega_UL20A: Cytom 26.0 86 0.0019 18.7 2.4 14 3-16 2-15 (100)
346 PF00789 UBX: UBX domain; Int 26.0 99 0.0021 17.7 2.8 30 111-140 13-42 (82)
347 COG0295 Cdd Cytidine deaminase 25.9 44 0.00096 21.9 1.3 12 55-66 87-98 (134)
348 PF00352 TBP: Transcription fa 25.9 1E+02 0.0023 18.1 2.9 30 106-138 50-79 (86)
349 cd01770 p47_UBX p47-like ubiqu 25.5 1.2E+02 0.0026 17.7 3.0 28 112-139 12-39 (79)
350 TIGR02182 GRXB Glutaredoxin, G 24.5 2.5E+02 0.0053 19.5 6.4 19 51-69 3-21 (209)
351 PRK11622 hypothetical protein; 24.5 3.4E+02 0.0073 21.1 7.5 8 35-42 27-34 (401)
352 PF07511 DUF1525: Protein of u 24.1 63 0.0014 20.5 1.8 15 97-111 76-90 (114)
353 COG5661 Predicted secreted Zn- 23.4 1.3E+02 0.0029 21.0 3.3 14 33-46 43-56 (210)
354 PF11153 DUF2931: Protein of u 23.0 1.9E+02 0.0042 20.3 4.3 16 5-21 3-18 (216)
355 PHA02131 hypothetical protein 22.8 47 0.001 18.1 0.9 22 101-122 25-46 (70)
356 COG2761 FrnE Predicted dithiol 22.7 2.1E+02 0.0045 20.6 4.3 28 46-73 5-33 (225)
357 PF11238 DUF3039: Protein of u 22.6 47 0.001 18.3 0.8 13 54-66 45-57 (58)
358 PF14097 SpoVAE: Stage V sporu 22.5 93 0.002 21.4 2.4 35 21-55 27-63 (180)
359 PHA02091 hypothetical protein 22.4 1.2E+02 0.0027 16.9 2.4 21 43-63 43-68 (72)
360 PF07521 RMMBL: RNA-metabolisi 22.2 93 0.002 15.7 1.9 26 119-144 12-37 (43)
361 TIGR01672 AphA HAD superfamily 22.0 2.4E+02 0.0051 20.4 4.6 25 27-51 44-68 (237)
362 TIGR02652 conserved hypothetic 21.9 35 0.00076 22.5 0.3 14 55-68 11-24 (163)
363 TIGR03757 conj_TIGR03757 integ 21.8 76 0.0017 20.2 1.8 14 97-110 77-90 (113)
364 PF09654 DUF2396: Protein of u 21.8 34 0.00074 22.5 0.2 14 55-68 8-21 (161)
365 COG2854 Ttg2D ABC-type transpo 21.1 77 0.0017 22.4 1.9 13 46-58 78-90 (202)
366 TIGR00862 O-ClC intracellular 20.5 3.4E+02 0.0073 19.6 6.7 68 54-140 17-85 (236)
367 PF10262 Rdx: Rdx family; Int 20.1 1.9E+02 0.0041 16.5 4.9 66 56-136 8-75 (76)
368 PRK12411 cytidine deaminase; P 20.0 64 0.0014 21.0 1.2 12 55-66 85-96 (132)
369 cd03050 GST_N_Theta GST_N fami 20.0 1.8E+02 0.0038 16.1 4.3 51 49-109 2-56 (76)
No 1
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.95 E-value=1.4e-27 Score=151.62 Aligned_cols=106 Identities=21% Similarity=0.381 Sum_probs=96.0
Q ss_pred ccCCCCceeecCcccHHHh---hccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH-
Q psy12669 22 GSVNNSQVIELDTDNVDYV---RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC- 97 (157)
Q Consensus 22 ~~~~~~~v~~l~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~- 97 (157)
+++..+.+.++++++|++. ++++++++|.|||+||++|+.+.|.++++++.+ ++.+.|++|||+++.++|
T Consensus 4 ~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~------~~~v~~~~Vd~d~~~~l~~ 77 (113)
T cd03006 4 FFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKL------SDQVLFVAINCWWPQGKCR 77 (113)
T ss_pred ccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHh------cCCeEEEEEECCCChHHHH
Confidence 3445688999999999986 578999999999999999999999999999998 466999999999999999
Q ss_pred hhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 98 EDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 98 ~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
++|+|+++||+++|++|+... +|.|..+.+.|..|+
T Consensus 78 ~~~~I~~~PTl~lf~~g~~~~-~y~G~~~~~~i~~~~ 113 (113)
T cd03006 78 KQKHFFYFPVIHLYYRSRGPI-EYKGPMRAPYMEKFV 113 (113)
T ss_pred HhcCCcccCEEEEEECCccce-EEeCCCCHHHHHhhC
Confidence 589999999999999998776 899999999999874
No 2
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.95 E-value=8.4e-27 Score=147.73 Aligned_cols=108 Identities=37% Similarity=0.771 Sum_probs=95.8
Q ss_pred CceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 27 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
+++.++++++|++.++.+++++|.||++||++|+++.|.|+++++.+++..+..+++.++.+||+++++++++|+|+++|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 1 SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred CceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 46889999999999988999999999999999999999999999988654321236999999999999999999999999
Q ss_pred eEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 107 TVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 107 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
|+++|++|+....+|.|.++.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999985534899999999999985
No 3
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.95 E-value=1.3e-26 Score=145.16 Aligned_cols=99 Identities=23% Similarity=0.508 Sum_probs=92.9
Q ss_pred ceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCe
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 107 (157)
.+.+++.++|++.++++++++|.||++||++|+++.|.++++++.+ ++++.|++|||++++++|++++|+++||
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~------~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 75 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEM------DGVIRIGAVNCGDDRMLCRSQGVNSYPS 75 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHh------cCceEEEEEeCCccHHHHHHcCCCccCE
Confidence 5788999999998888899999999999999999999999999998 5679999999999999999999999999
Q ss_pred EEEEecCccceeeeccccCHHHHHHH
Q psy12669 108 VKIMRHGSIEKLEYRRERTVEALVKY 133 (157)
Q Consensus 108 ~~~~~~g~~~~~~~~g~~~~~~l~~~ 133 (157)
+++|++|+... +|.|.++.+.|.+|
T Consensus 76 ~~~~~~g~~~~-~~~G~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMNPE-KYYGDRSKESLVKF 100 (101)
T ss_pred EEEEcCCCCcc-cCCCCCCHHHHHhh
Confidence 99999998877 89999999999887
No 4
>KOG0910|consensus
Probab=99.94 E-value=8.5e-27 Score=151.33 Aligned_cols=106 Identities=23% Similarity=0.368 Sum_probs=99.2
Q ss_pred CceeecCcccHHH-hhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCC
Q psy12669 27 SQVIELDTDNVDY-VRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105 (157)
Q Consensus 27 ~~v~~l~~~~~~~-~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 105 (157)
..+..++..+|++ +++.+.||+|.|||+||++|+.+.|.++++..++ .+++.++++|.|++.+++.+|+|+.+
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~------~g~~k~~kvdtD~~~ela~~Y~I~av 116 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEY------AGKFKLYKVDTDEHPELAEDYEISAV 116 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhh------cCeEEEEEEccccccchHhhcceeee
Confidence 4567788889986 6788999999999999999999999999999998 68999999999999999999999999
Q ss_pred CeEEEEecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
||+++|++|+... ++.|..+.+.+.+||++++.
T Consensus 117 PtvlvfknGe~~d-~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 117 PTVLVFKNGEKVD-RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eEEEEEECCEEee-eecccCCHHHHHHHHHHHhc
Confidence 9999999999998 99999999999999999864
No 5
>PTZ00102 disulphide isomerase; Provisional
Probab=99.94 E-value=6.3e-26 Score=176.53 Aligned_cols=148 Identities=17% Similarity=0.348 Sum_probs=122.3
Q ss_pred CchhhHHHHHHHHHHHHhhhcccC-----CCCceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHh
Q psy12669 1 MLPCRLAAFSVLILVLSDVVVGSV-----NNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLIN 75 (157)
Q Consensus 1 m~~~~l~~~~~~~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~ 75 (157)
|++|++++++++++++.+.+..+. ....+..++.++|++.+++++.++|.||++||++|+++.|.|.++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~ 80 (477)
T PTZ00102 1 IGFRSILSSLFLLLILLAFAVFGSAEEHFISEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKE 80 (477)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHh
Confidence 667765544433333333322111 135789999999999998899999999999999999999999999988865
Q ss_pred cCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHHHHcCCCceeccCcccccc
Q psy12669 76 LLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENLVN 153 (157)
Q Consensus 76 ~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 153 (157)
. ..++.++.|||+++.++|++|+|+++||+++|++|+.+ +|.|.++++.|.+|+.+.+.+++..+.+.++++.
T Consensus 81 ~---~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~--~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~ 153 (477)
T PTZ00102 81 K---KSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPV--NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKL 153 (477)
T ss_pred c---CCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceE--EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHH
Confidence 4 35799999999999999999999999999999999765 6999999999999999999999999988766554
No 6
>KOG0190|consensus
Probab=99.94 E-value=1.7e-26 Score=175.83 Aligned_cols=128 Identities=21% Similarity=0.469 Sum_probs=119.5
Q ss_pred CCCCceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCC
Q psy12669 24 VNNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIV 103 (157)
Q Consensus 24 ~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~ 103 (157)
..+..+..|+.++|++.+..+..++|.||||||+||++..|.+++++..+.+. ...+..++|||+.+.++|.+|+|+
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~---~s~i~LakVDat~~~~~~~~y~v~ 98 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEE---GSPVKLAKVDATEESDLASKYEVR 98 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhcc---CCCceeEEeecchhhhhHhhhcCC
Confidence 45789999999999999999999999999999999999999999999999766 357999999999999999999999
Q ss_pred CCCeEEEEecCccceeeeccccCHHHHHHHHHHHcCCCceeccCcccccccc
Q psy12669 104 KYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENLVNVE 155 (157)
Q Consensus 104 ~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (157)
++||+.+|++|+... .|.|.++++.|+.|+.+..++.++.+.+.++++.|.
T Consensus 99 gyPTlkiFrnG~~~~-~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l 149 (493)
T KOG0190|consen 99 GYPTLKIFRNGRSAQ-DYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFL 149 (493)
T ss_pred CCCeEEEEecCCcce-eccCcccHHHHHHHHHhccCCCceecccHHHHHhhc
Confidence 999999999999844 799999999999999999999999999999888764
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.94 E-value=1.8e-25 Score=140.08 Aligned_cols=102 Identities=24% Similarity=0.581 Sum_probs=96.0
Q ss_pred eeecCcccHHHhhcc-CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCe
Q psy12669 29 VIELDTDNVDYVRDN-YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107 (157)
Q Consensus 29 v~~l~~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 107 (157)
|..+++++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+ .+++.++.+|++++++++++|+|.++|+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~------~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 74 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEY------KDNVKFAKVDCDENKELCKKYGVKSVPT 74 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHT------TTTSEEEEEETTTSHHHHHHTTCSSSSE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccc------ccccccchhhhhccchhhhccCCCCCCE
Confidence 467899999998876 899999999999999999999999999998 4589999999999999999999999999
Q ss_pred EEEEecCccceeeeccccCHHHHHHHHHHH
Q psy12669 108 VKIMRHGSIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 108 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
+++|++|+... ++.|..+.+.|.+||+++
T Consensus 75 ~~~~~~g~~~~-~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 75 IIFFKNGKEVK-RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEETTEEEE-EEESSSSHHHHHHHHHHH
T ss_pred EEEEECCcEEE-EEECCCCHHHHHHHHHcC
Confidence 99999999998 999999999999999874
No 8
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.93 E-value=1.9e-25 Score=140.57 Aligned_cols=100 Identities=25% Similarity=0.553 Sum_probs=90.4
Q ss_pred ceeecCcccHHHhh-ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 28 QVIELDTDNVDYVR-DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 28 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
.+.+++.++|++.+ +.+++++|.||++||++|+.+.|.|+++++.+ .+.+.++++|++++++++++++|+++|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~------~~~~~~~~vd~~~~~~~~~~~~i~~~P 75 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARAL------KGKVKVGSVDCQKYESLCQQANIRAYP 75 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHh------cCCcEEEEEECCchHHHHHHcCCCccc
Confidence 57789999999865 56679999999999999999999999999998 467999999999999999999999999
Q ss_pred eEEEEecC-ccceeeeccccC-HHHHHHHH
Q psy12669 107 TVKIMRHG-SIEKLEYRRERT-VEALVKYV 134 (157)
Q Consensus 107 ~~~~~~~g-~~~~~~~~g~~~-~~~l~~~l 134 (157)
|+++|++| +... +|.|..+ .++|.+|+
T Consensus 76 t~~~~~~g~~~~~-~~~G~~~~~~~l~~~i 104 (104)
T cd03004 76 TIRLYPGNASKYH-SYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEEcCCCCCce-EccCCCCCHHHHHhhC
Confidence 99999988 6666 8999987 99999885
No 9
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.93 E-value=5.9e-25 Score=154.50 Aligned_cols=108 Identities=16% Similarity=0.398 Sum_probs=97.6
Q ss_pred CCceeecCcccHHHhhcc-----CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhC
Q psy12669 26 NSQVIELDTDNVDYVRDN-----YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDY 100 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~ 100 (157)
++.+.++++++|++.+.. +++++|+||++||++|+.+.|.|+++++.+ ++.+.++.+|++++++++++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~------~~~v~~~~VD~~~~~~l~~~~ 102 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKAL------KGQVNVADLDATRALNLAKRF 102 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHc------CCCeEEEEecCcccHHHHHHc
Confidence 567999999999997642 578999999999999999999999999998 567999999999999999999
Q ss_pred CCCCCCeEEEEecCccceeeeccccCHHHHHHHHHHHcCC
Q psy12669 101 NIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMD 140 (157)
Q Consensus 101 ~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~ 140 (157)
+|+++||+++|++|+.+. .+.|..+.+++.+|+.+....
T Consensus 103 ~I~~~PTl~~f~~G~~v~-~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 103 AIKGYPTLLLFDKGKMYQ-YEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CCCcCCEEEEEECCEEEE-eeCCCCCHHHHHHHHHHHHHh
Confidence 999999999999998877 677889999999999888653
No 10
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.93 E-value=1.2e-24 Score=136.13 Aligned_cols=101 Identities=22% Similarity=0.445 Sum_probs=89.7
Q ss_pred CceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 27 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
+.+.+++.++|++++++ + ++|.||++||++|+.+.|.|+++++.++ ..++.++.+|+++++.++++|+|+++|
T Consensus 1 ~~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~-----~~~v~~~~vd~~~~~~~~~~~~i~~~P 73 (101)
T cd02994 1 SNVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSD-----DLGINVAKVDVTQEPGLSGRFFVTALP 73 (101)
T ss_pred CceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhc-----cCCeEEEEEEccCCHhHHHHcCCcccC
Confidence 35889999999998743 3 7899999999999999999999998763 236999999999999999999999999
Q ss_pred eEEEEecCccceeeeccccCHHHHHHHHHH
Q psy12669 107 TVKIMRHGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 107 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
|+++|++|+. . +|.|..+.+.|..|+++
T Consensus 74 t~~~~~~g~~-~-~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 74 TIYHAKDGVF-R-RYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEEeCCCCE-E-EecCCCCHHHHHHHHhC
Confidence 9999999974 5 79999999999999874
No 11
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=2.8e-24 Score=134.44 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=83.9
Q ss_pred CcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC----hhhHhhCCCCCCCeE
Q psy12669 33 DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY----ESVCEDYNIVKYPTV 108 (157)
Q Consensus 33 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~~~~~~~i~~~P~~ 108 (157)
+.++|++.++++++++|+|||+||++|+.+.|.++++++.+ ..++.++.+|++++ ++++++|+|+++||+
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~------~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~ 76 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESG------DIKKPILTLNLDAEDVDREKAVKLFDIMSTPVL 76 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhh------cCCceEEEEECCccccccHHHHHHCCCccccEE
Confidence 35678888888999999999999999999999999998775 34577899999976 689999999999999
Q ss_pred EEEecCccceeeeccccCHHHHHHH
Q psy12669 109 KIMRHGSIEKLEYRRERTVEALVKY 133 (157)
Q Consensus 109 ~~~~~g~~~~~~~~g~~~~~~l~~~ 133 (157)
++|++|+.+. +..|..+.+.+.++
T Consensus 77 i~fk~G~~v~-~~~G~~~~~~l~~~ 100 (103)
T PHA02278 77 IGYKDGQLVK-KYEDQVTPMQLQEL 100 (103)
T ss_pred EEEECCEEEE-EEeCCCCHHHHHhh
Confidence 9999999998 99999998888776
No 12
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.92 E-value=5.1e-24 Score=136.24 Aligned_cols=109 Identities=12% Similarity=0.181 Sum_probs=94.4
Q ss_pred CCCCceeecCcccHHHhhc-cCCeEEEEEecCCChH--HH--hhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHh
Q psy12669 24 VNNSQVIELDTDNVDYVRD-NYDFVLILFYVKWCRF--SV--AMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCE 98 (157)
Q Consensus 24 ~~~~~v~~l~~~~~~~~~~-~~~~~lv~f~~~~C~~--C~--~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~ 98 (157)
.+...+..++++||++.+. ...++++.||+.||++ |+ .+.|.+.+++..+-+ ++++.+++||+++++++++
T Consensus 6 ~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~----~~~v~~~kVD~d~~~~La~ 81 (120)
T cd03065 6 DGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE----DKGIGFGLVDSKKDAKVAK 81 (120)
T ss_pred CCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh----cCCCEEEEEeCCCCHHHHH
Confidence 4456899999999998765 4558889999999987 99 888999888877632 2469999999999999999
Q ss_pred hCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHHHHc
Q psy12669 99 DYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 99 ~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
+|+|+++||+++|++|+.+. |.|.++.+.|.+|+.+..
T Consensus 82 ~~~I~~iPTl~lfk~G~~v~--~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 82 KLGLDEEDSIYVFKDDEVIE--YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HcCCccccEEEEEECCEEEE--eeCCCCHHHHHHHHHHHh
Confidence 99999999999999999764 999999999999998764
No 13
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.8e-24 Score=153.25 Aligned_cols=108 Identities=19% Similarity=0.398 Sum_probs=100.8
Q ss_pred CCceeecCcccHHHhh---ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCC
Q psy12669 26 NSQVIELDTDNVDYVR---DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNI 102 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i 102 (157)
...+.++|..||++.+ +...||+|+||+|||++|+++.|.+++++..+ .+++.+++||||+++.++.+|||
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~------~G~f~LakvN~D~~p~vAaqfgi 95 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEY------KGKFKLAKVNCDAEPMVAAQFGV 95 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHh------CCceEEEEecCCcchhHHHHhCc
Confidence 4569999999998744 35559999999999999999999999999999 78999999999999999999999
Q ss_pred CCCCeEEEEecCccceeeeccccCHHHHHHHHHHHcCC
Q psy12669 103 VKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMD 140 (157)
Q Consensus 103 ~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~ 140 (157)
+++|+++.|++|+++. -|.|....+.+.+|+.+.++.
T Consensus 96 qsIPtV~af~dGqpVd-gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 96 QSIPTVYAFKDGQPVD-GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CcCCeEEEeeCCcCcc-ccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999999998 899999999999999999887
No 14
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.92 E-value=4.8e-24 Score=133.51 Aligned_cols=102 Identities=24% Similarity=0.563 Sum_probs=90.9
Q ss_pred ceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCe
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 107 (157)
++.++++++|++.+.++ +++|.||++||++|+.+.|.+.++++.++.. ..++.++.+|++++..++++|+|.++|+
T Consensus 1 ~~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 1 GVLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE---NPSVKIAKVDCTQHRELCSEFQVRGYPT 76 (102)
T ss_pred CeeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc---CCcEEEEEEECCCChhhHhhcCCCcCCE
Confidence 36789999999988655 5999999999999999999999999998532 1369999999999999999999999999
Q ss_pred EEEEecCccceeeeccccCHHHHHHHH
Q psy12669 108 VKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 108 ~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
+++|++|+.+. +|.|..+.+.|.+||
T Consensus 77 ~~~~~~g~~~~-~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVD-KYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeee-EeeCCCCHHHHHhhC
Confidence 99999998776 899999999998875
No 15
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.92 E-value=9.8e-24 Score=140.29 Aligned_cols=108 Identities=14% Similarity=0.249 Sum_probs=89.5
Q ss_pred HHHHHHHhhhcccCCCCceeecCcccHHHhhc--cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEE
Q psy12669 11 VLILVLSDVVVGSVNNSQVIELDTDNVDYVRD--NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKI 88 (157)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 88 (157)
+++..+.........+..+.++++++|++.+. ++++++|+||++||++|+.+.|.+++++++++ ..++.|++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~-----~~~v~f~~V 86 (152)
T cd02962 12 CIVVYLLAPQPLYMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYN-----NNNLKFGKI 86 (152)
T ss_pred HHHHHHHhCCCccCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc-----cCCeEEEEE
Confidence 33333333333444567899999999998763 35689999999999999999999999999873 235999999
Q ss_pred eCCCChhhHhhCCCCC------CCeEEEEecCccceeeeccc
Q psy12669 89 NCDDYESVCEDYNIVK------YPTVKIMRHGSIEKLEYRRE 124 (157)
Q Consensus 89 d~~~~~~~~~~~~i~~------~P~~~~~~~g~~~~~~~~g~ 124 (157)
|++++++++++|+|.+ +||+++|++|+.+. ++.|.
T Consensus 87 Dvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~-r~~G~ 127 (152)
T cd02962 87 DIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA-RRPYY 127 (152)
T ss_pred ECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE-EEecc
Confidence 9999999999999988 99999999999998 88873
No 16
>PRK09381 trxA thioredoxin; Provisional
Probab=99.91 E-value=1.7e-23 Score=132.72 Aligned_cols=106 Identities=22% Similarity=0.435 Sum_probs=97.1
Q ss_pred CCceeecCcccHHH-hhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCC
Q psy12669 26 NSQVIELDTDNVDY-VRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK 104 (157)
Q Consensus 26 ~~~v~~l~~~~~~~-~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~ 104 (157)
+..+.++++++|++ +++.+++++|+||++||++|+.+.|.++++++.+ .+++.++.+|+++.+.++++|++++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~------~~~~~~~~vd~~~~~~~~~~~~v~~ 75 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY------QGKLTVAKLNIDQNPGTAPKYGIRG 75 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHh------CCCcEEEEEECCCChhHHHhCCCCc
Confidence 35788999999986 5677889999999999999999999999999998 4679999999999999999999999
Q ss_pred CCeEEEEecCccceeeeccccCHHHHHHHHHHHc
Q psy12669 105 YPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 105 ~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
+|++++|++|+.+. ++.|..+.+.|..++.+.+
T Consensus 76 ~Pt~~~~~~G~~~~-~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 76 IPTLLLFKNGEVAA-TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCEEEEEeCCeEEE-EecCCCCHHHHHHHHHHhc
Confidence 99999999999888 8999999999999998875
No 17
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=1.8e-23 Score=137.89 Aligned_cols=106 Identities=20% Similarity=0.386 Sum_probs=97.7
Q ss_pred CCceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCC
Q psy12669 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 105 (157)
...+.+++.++|+++++++++++|+||++||++|+.+.|.+.++++.+ .+++.++++|++++++++++|+|+++
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~------~~~v~~~~vd~~~~~~l~~~~~V~~~ 107 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAER------SGKVRFVKVNTEAERELSARFRIRSI 107 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHh------CCCeEEEEEeCCCCHHHHHhcCCCcc
Confidence 345777899999999988999999999999999999999999999887 56799999999999999999999999
Q ss_pred CeEEEEecCccceeeeccccCHHHHHHHHHHHc
Q psy12669 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
|++++|++|+.+. ++.|..+.+.|.+|+++.+
T Consensus 108 Ptlii~~~G~~v~-~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 108 PTIMIFKNGQVVD-MLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CEEEEEECCEEEE-EEcCCCCHHHHHHHHHHhC
Confidence 9999999999988 8999999999999998753
No 18
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.91 E-value=1.4e-23 Score=133.05 Aligned_cols=101 Identities=27% Similarity=0.581 Sum_probs=89.7
Q ss_pred ceeecCcccHHHhh-ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC--ChhhHhhCCCCC
Q psy12669 28 QVIELDTDNVDYVR-DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD--YESVCEDYNIVK 104 (157)
Q Consensus 28 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~ 104 (157)
++.+++.++|++.+ +.+++++|.||++||++|+.+.|.+.++++.+ .+.+.++.+|+++ +.+++++|+|++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~------~~~~~~~~v~~~~~~~~~~~~~~~i~~ 74 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKEL------DGLVQVAAVDCDEDKNKPLCGKYGVQG 74 (109)
T ss_pred CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHh------cCCceEEEEecCccccHHHHHHcCCCc
Confidence 36789999999876 55678999999999999999999999999988 4678999999998 889999999999
Q ss_pred CCeEEEEecCc----cceeeeccccCHHHHHHHH
Q psy12669 105 YPTVKIMRHGS----IEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 105 ~P~~~~~~~g~----~~~~~~~g~~~~~~l~~~l 134 (157)
+|++++|++|+ .....|.|..+.+.|.+|+
T Consensus 75 ~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 75 FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 99999999886 2333799999999999997
No 19
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.91 E-value=1.4e-23 Score=133.58 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=88.8
Q ss_pred ecCcccHHH-hh--ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCe
Q psy12669 31 ELDTDNVDY-VR--DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107 (157)
Q Consensus 31 ~l~~~~~~~-~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 107 (157)
.++.++|++ ++ +++++++|.||++||++|+.+.|.++++++.+. +.++.+++||+++++.++++++|+++||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~-----~~~v~~~~vd~d~~~~l~~~~~V~~~Pt 82 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELE-----PLGVGIATVNAGHERRLARKLGAHSVPA 82 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHH-----hcCceEEEEeccccHHHHHHcCCccCCE
Confidence 457788875 44 367899999999999999999999999999984 2359999999999999999999999999
Q ss_pred EEEEecCccceeeeccccCHHHHHHHHHH
Q psy12669 108 VKIMRHGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 108 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
+++|++|+.+. ++.|..+.+.|.+|+.+
T Consensus 83 ~~i~~~g~~~~-~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 83 IVGIINGQVTF-YHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEECCEEEE-EecCCCCHHHHHHHHhc
Confidence 99999998877 88999999999999976
No 20
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.91 E-value=1.1e-23 Score=132.96 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=77.4
Q ss_pred cccHHHhhc--cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEE
Q psy12669 34 TDNVDYVRD--NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 34 ~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 111 (157)
.++|++.+. .+++++|.|||+||++|+.+.|.+++++.++ .+.+.|++||.+++++++++|+|+++||+++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~------~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~f 75 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDV------SNFAVIYLVDIDEVPDFNKMYELYDPPTVMFF 75 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHc------cCceEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 457787764 5779999999999999999999999999998 56689999999999999999999999999999
Q ss_pred ecCccceeeeccccCH
Q psy12669 112 RHGSIEKLEYRRERTV 127 (157)
Q Consensus 112 ~~g~~~~~~~~g~~~~ 127 (157)
++|+.+. +..|..+.
T Consensus 76 k~G~~v~-~~~G~~~~ 90 (114)
T cd02954 76 FRNKHMK-IDLGTGNN 90 (114)
T ss_pred ECCEEEE-EEcCCCCC
Confidence 9999998 77775443
No 21
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.91 E-value=2.9e-23 Score=130.32 Aligned_cols=102 Identities=25% Similarity=0.581 Sum_probs=92.3
Q ss_pred ceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC--ChhhHhhCCCCCC
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD--YESVCEDYNIVKY 105 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~ 105 (157)
.+.++++.+|++.++++++++|.||++||++|+.+.|.+.++++.+.+. +.+.++.+|++. ++.++++++|+++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~----~~~~~~~id~~~~~~~~~~~~~~i~~~ 76 (104)
T cd02997 1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED----GKGVLAAVDCTKPEHDALKEEYNVKGF 76 (104)
T ss_pred CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC----CceEEEEEECCCCccHHHHHhCCCccc
Confidence 3678899999999988889999999999999999999999999888432 468999999998 8999999999999
Q ss_pred CeEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 106 PTVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
|++++|++|+.+. ++.|..+.+.+.+|+
T Consensus 77 Pt~~~~~~g~~~~-~~~g~~~~~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKFVE-KYEGERTAEDIIEFM 104 (104)
T ss_pred cEEEEEeCCCeeE-EeCCCCCHHHHHhhC
Confidence 9999999998777 899999999999885
No 22
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.90 E-value=2.4e-23 Score=161.24 Aligned_cols=124 Identities=25% Similarity=0.506 Sum_probs=113.3
Q ss_pred ceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCe
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 107 (157)
.+.++++++|+++++++++++|.|||+||++|+++.|.+.++++.+++. ..++.++.|||+++.++|++|+|.++||
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~---~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 78 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKK---GPPIKLAKVDATEEKDLAQKYGVSGYPT 78 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhc---CCceEEEEEECCCcHHHHHhCCCccccE
Confidence 5788999999999999999999999999999999999999999988654 2469999999999999999999999999
Q ss_pred EEEEecCcc-ceeeeccccCHHHHHHHHHHHcCCCceeccCcccccccc
Q psy12669 108 VKIMRHGSI-EKLEYRRERTVEALVKYVREELMDPTIEIPEEENLVNVE 155 (157)
Q Consensus 108 ~~~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (157)
+++|++|+. +. +|.|.++.+.|.+|+.+.++++...+.+.++++.+.
T Consensus 79 ~~~~~~g~~~~~-~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~ 126 (462)
T TIGR01130 79 LKIFRNGEDSVS-DYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFL 126 (462)
T ss_pred EEEEeCCcccee-EecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHH
Confidence 999999987 55 799999999999999999999999998888877653
No 23
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.90 E-value=3.8e-23 Score=128.20 Aligned_cols=94 Identities=19% Similarity=0.370 Sum_probs=84.6
Q ss_pred ccHHHhh-cc-CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEe
Q psy12669 35 DNVDYVR-DN-YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMR 112 (157)
Q Consensus 35 ~~~~~~~-~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 112 (157)
++|++.+ +. +++++|+||++||++|+.+.|.+.++++.+ .+.+.++.+|++++.+++++|+|.++|++++|+
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~------~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEY------QGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHh------CCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEe
Confidence 3677766 33 679999999999999999999999999988 467999999999999999999999999999999
Q ss_pred cCccceeeeccccCHHHHHHHHH
Q psy12669 113 HGSIEKLEYRRERTVEALVKYVR 135 (157)
Q Consensus 113 ~g~~~~~~~~g~~~~~~l~~~l~ 135 (157)
+|+.+. ++.|..+.+.|.+|+.
T Consensus 75 ~g~~~~-~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 75 AGQPVD-GFQGAQPEEQLRQMLD 96 (96)
T ss_pred CCEEee-eecCCCCHHHHHHHhC
Confidence 998887 8999999999999873
No 24
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.90 E-value=4.8e-23 Score=129.16 Aligned_cols=101 Identities=25% Similarity=0.475 Sum_probs=90.3
Q ss_pred ceeecCcccHHHhhc-cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 28 QVIELDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
++.++++++|++.+. .+++++|.||++||++|+.+.|.|.++++.+ .+.+.++.+|++++++++++|+|+++|
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~------~~~~~~~~id~~~~~~~~~~~~i~~~P 74 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKAL------KGIVKVGAVDADVHQSLAQQYGVRGFP 74 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHh------cCCceEEEEECcchHHHHHHCCCCccC
Confidence 367889999998764 4556999999999999999999999999887 567999999999999999999999999
Q ss_pred eEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 107 TVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 107 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
++++|++|.....+|.|..+.+.|.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 75 TIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 9999998855445899999999999997
No 25
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.90 E-value=8.9e-23 Score=127.59 Aligned_cols=101 Identities=23% Similarity=0.505 Sum_probs=91.0
Q ss_pred cCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEE
Q psy12669 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 32 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 111 (157)
|++++|++.+.++++++|.||++||++|+.+.+.++++++.++.. +++.++.+|++++.+++++|+|+++|++++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD----PDIVLAKVDATAEKDLASRFGVSGFPTIKFF 76 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC----CceEEEEEEccchHHHHHhCCCCcCCEEEEe
Confidence 577899998888999999999999999999999999999888321 2699999999999999999999999999999
Q ss_pred ecCccceeeeccccCHHHHHHHHHHH
Q psy12669 112 RHGSIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 112 ~~g~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
++|+... +|.|..+.+.|..|+.+.
T Consensus 77 ~~~~~~~-~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGKKPV-DYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCcce-eecCCCCHHHHHHHHHhc
Confidence 9887654 899999999999999875
No 26
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.90 E-value=1.4e-22 Score=127.12 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=86.3
Q ss_pred cCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEE
Q psy12669 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 32 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 111 (157)
-+.++|+++++++++++|+|||+||++|+.+.|.+.++++.+. ...+.|+.+|++ +.+++++|+|+++||+++|
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~-----~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG-----DDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC-----CCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE
Confidence 4678899999899999999999999999999999999998873 235889999999 7789999999999999999
Q ss_pred ecCccceeeeccccCHHHHHHHHHH
Q psy12669 112 RHGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 112 ~~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
++|+.+. +..|. +.+.+.++|.+
T Consensus 79 ~~g~~~~-~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGELVA-VIRGA-NAPLLNKTITE 101 (102)
T ss_pred ECCEEEE-EEecC-ChHHHHHHHhh
Confidence 9999998 88884 88889888865
No 27
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.89 E-value=8.3e-23 Score=127.55 Aligned_cols=84 Identities=24% Similarity=0.534 Sum_probs=76.8
Q ss_pred ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC-CChhhHhhCCCCCCCeEEEEecCccceee
Q psy12669 42 DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD-DYESVCEDYNIVKYPTVKIMRHGSIEKLE 120 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~~i~~~P~~~~~~~g~~~~~~ 120 (157)
.++++++|.|||+||++|+.+.|.++++++.+ +++.++.+|.+ ++++++++|+|+++||+++|++| ... +
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-------~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~-~ 86 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMF-------PQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRV-R 86 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-------ccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-cee-E
Confidence 47889999999999999999999999999987 24788999999 78999999999999999999998 555 8
Q ss_pred eccccCHHHHHHHH
Q psy12669 121 YRRERTVEALVKYV 134 (157)
Q Consensus 121 ~~g~~~~~~l~~~l 134 (157)
|.|..+.+.|.+|+
T Consensus 87 ~~G~~~~~~l~~f~ 100 (100)
T cd02999 87 YNGTRTLDSLAAFY 100 (100)
T ss_pred ecCCCCHHHHHhhC
Confidence 99999999999885
No 28
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.89 E-value=1.4e-22 Score=128.60 Aligned_cols=102 Identities=23% Similarity=0.524 Sum_probs=87.3
Q ss_pred ceeecCcccHHHhh---ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-ChhhHh-hCCC
Q psy12669 28 QVIELDTDNVDYVR---DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-YESVCE-DYNI 102 (157)
Q Consensus 28 ~v~~l~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~-~~~i 102 (157)
.+.+++.++|++.+ +.+++++|.||++||++|+++.|.|.++++.++ +.++.++.||++. ...++. .+++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~-----~~~~~~~~vd~d~~~~~~~~~~~~v 76 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLA-----GSNVKVAKFNADGEQREFAKEELQL 76 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc-----cCCeEEEEEECCccchhhHHhhcCC
Confidence 57889999999876 357899999999999999999999999999884 2359999999998 577886 4999
Q ss_pred CCCCeEEEEecCccceeeeccc-cCHHHHHHHH
Q psy12669 103 VKYPTVKIMRHGSIEKLEYRRE-RTVEALVKYV 134 (157)
Q Consensus 103 ~~~P~~~~~~~g~~~~~~~~g~-~~~~~l~~~l 134 (157)
+++||+++|++|......|.|. ++.++|..|+
T Consensus 77 ~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 77 KSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999999998776544489995 8999999885
No 29
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.89 E-value=8.5e-23 Score=129.24 Aligned_cols=100 Identities=16% Similarity=0.312 Sum_probs=83.3
Q ss_pred ceeecCcccHHHhhccCCeEEEEEec--CCCh---HHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeC-----CCChhhH
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYV--KWCR---FSVAMLPTFDEVLVTLINLLPEPRKFAITKINC-----DDYESVC 97 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~--~~C~---~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~-----~~~~~~~ 97 (157)
++.+|+++||++++++++.+||.||| |||+ +|+++.|.+...+ ..+.+++||| .++.++|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa----------~~v~lakVd~~d~~~~~~~~L~ 71 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT----------DDLLVAEVGIKDYGEKLNMELG 71 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc----------CceEEEEEecccccchhhHHHH
Confidence 57899999999999999999999999 8888 5555555554443 2488999999 4568899
Q ss_pred hhCCCC--CCCeEEEEecCc-cceeeeccc-cCHHHHHHHHHHH
Q psy12669 98 EDYNIV--KYPTVKIMRHGS-IEKLEYRRE-RTVEALVKYVREE 137 (157)
Q Consensus 98 ~~~~i~--~~P~~~~~~~g~-~~~~~~~g~-~~~~~l~~~l~~~ 137 (157)
++|+|+ ++||+.+|++|. ..+..|.|. ++.+.|++|+.+.
T Consensus 72 ~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 72 ERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999 999999999885 222369997 9999999999875
No 30
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.89 E-value=1.9e-22 Score=126.49 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=91.8
Q ss_pred CCceeecCcccHHHhhccCCeEEEEEecCC--ChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCC
Q psy12669 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKW--CRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIV 103 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~ 103 (157)
..++..+|..||++.++.+.+++|.||++| |++|+.+.|.++++++++ ++.+.|+++|++++++++.+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~------~~~v~f~kVdid~~~~la~~f~V~ 82 (111)
T cd02965 9 RHGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAF------PGRFRAAVVGRADEQALAARFGVL 82 (111)
T ss_pred hcCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHC------CCcEEEEEEECCCCHHHHHHcCCC
Confidence 457889999999999988899999999997 999999999999999998 677999999999999999999999
Q ss_pred CCCeEEEEecCccceeeeccccCHHHHH
Q psy12669 104 KYPTVKIMRHGSIEKLEYRRERTVEALV 131 (157)
Q Consensus 104 ~~P~~~~~~~g~~~~~~~~g~~~~~~l~ 131 (157)
++||+++|++|+.+. ++.|..+.+.+.
T Consensus 83 sIPTli~fkdGk~v~-~~~G~~~~~e~~ 109 (111)
T cd02965 83 RTPALLFFRDGRYVG-VLAGIRDWDEYV 109 (111)
T ss_pred cCCEEEEEECCEEEE-EEeCccCHHHHh
Confidence 999999999999998 899988877764
No 31
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.89 E-value=3.3e-22 Score=125.58 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=81.3
Q ss_pred CcccHHHhhc--cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh---hhHhhCCCCCCCe
Q psy12669 33 DTDNVDYVRD--NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE---SVCEDYNIVKYPT 107 (157)
Q Consensus 33 ~~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~i~~~P~ 107 (157)
+.++|++.+. ++++++|+||++||++|+.+.|.++++++.+ +++.|+.+|++++. +++++|+|+++||
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-------~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt 74 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-------NDVVFLLVNGDENDSTMELCRREKIIEVPH 74 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-------CCCEEEEEECCCChHHHHHHHHcCCCcCCE
Confidence 4577888774 3789999999999999999999999999886 45899999999874 7899999999999
Q ss_pred EEEEecCccceeeeccccCHHHHHHHHHH
Q psy12669 108 VKIMRHGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 108 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
+++|++|+.+. ++.| ..++.+.+-+..
T Consensus 75 ~~~~~~G~~v~-~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 75 FLFYKDGEKIH-EEEG-IGPDELIGDVLY 101 (103)
T ss_pred EEEEeCCeEEE-EEeC-CCHHHHHHHHHh
Confidence 99999999887 8999 556677666543
No 32
>KOG0912|consensus
Probab=99.89 E-value=4.7e-23 Score=146.78 Aligned_cols=123 Identities=37% Similarity=0.770 Sum_probs=114.5
Q ss_pred cCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEE
Q psy12669 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 32 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 111 (157)
++..|++.+++.+..++|.|||+||+.++...|.|++++..+++.+++ +++.+++|||+++..++.+|.|..|||+.+|
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~-~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPE-GKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCC-cceEEEEcccchhhHHhhhhccccCceeeee
Confidence 466789999999999999999999999999999999999999999984 8999999999999999999999999999999
Q ss_pred ecCccceeeeccccCHHHHHHHHHHHcCCCceeccCcccccccc
Q psy12669 112 RHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENLVNVE 155 (157)
Q Consensus 112 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (157)
++|....-.|.|.++.+.+.+|+++.+..++.+..+.++++.+.
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~ 123 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLD 123 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhh
Confidence 99998765799999999999999999999999998888877654
No 33
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.88 E-value=5e-22 Score=124.78 Aligned_cols=102 Identities=30% Similarity=0.633 Sum_probs=89.1
Q ss_pred eeecCcccHHHhhcc-CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-ChhhHhhCCCCCCC
Q psy12669 29 VIELDTDNVDYVRDN-YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-YESVCEDYNIVKYP 106 (157)
Q Consensus 29 v~~l~~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~i~~~P 106 (157)
+.++++++|++.+.+ +++++|.||++||++|+.+.|.|.++++.++. .+++.++.+|+++ +++++++|+|+++|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~~~~~~~~~~i~~~P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN----EDDVVIAKVDADEANKDLAKKYGVSGFP 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC----CCCEEEEEEECCCcchhhHHhCCCCCcC
Confidence 578899999997754 45899999999999999999999999999841 2569999999999 89999999999999
Q ss_pred eEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 107 TVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 107 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
++++|++|......|.|..+.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999987744444899999999999885
No 34
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.88 E-value=4.6e-22 Score=124.81 Aligned_cols=101 Identities=27% Similarity=0.484 Sum_probs=87.8
Q ss_pred ceeecCcccHHHhh-ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 28 QVIELDTDNVDYVR-DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 28 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
++.++++++|++.+ +.+++++|+||++||++|+.+.|.++++++.+++. .++.++.+|++++ +++..+++.++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~----~~~~~~~id~~~~-~~~~~~~~~~~P 75 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD----DNVVIAKMDATAN-DVPSEFVVDGFP 75 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC----CCEEEEEEeCcch-hhhhhccCCCCC
Confidence 47789999999876 44589999999999999999999999999988421 3699999999987 578889999999
Q ss_pred eEEEEecCc--cceeeeccccCHHHHHHHH
Q psy12669 107 TVKIMRHGS--IEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 107 ~~~~~~~g~--~~~~~~~g~~~~~~l~~~l 134 (157)
++++|++|+ ... +|.|..+.+.|.+||
T Consensus 76 t~~~~~~~~~~~~~-~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPI-KYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCce-EccCCcCHHHHHhhC
Confidence 999999887 344 899999999999885
No 35
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.88 E-value=1.8e-21 Score=121.32 Aligned_cols=100 Identities=22% Similarity=0.377 Sum_probs=89.3
Q ss_pred cCcccHHHhhcc-CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEE
Q psy12669 32 LDTDNVDYVRDN-YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 32 l~~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 110 (157)
++.++|++.+++ +++++|+||++||++|+.+.+.+.++++.+ .+++.++.+|++++++++++|++.++|++++
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~------~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~ 74 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEY------EGKVKFVKLNVDENPDIAAKYGIRSIPTLLL 74 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHh------cCCeEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 356788887654 559999999999999999999999999887 4579999999999999999999999999999
Q ss_pred EecCccceeeeccccCHHHHHHHHHHHc
Q psy12669 111 MRHGSIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 111 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
|++|+.+. ++.|..+.+.+.+|+++.+
T Consensus 75 ~~~g~~~~-~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 75 FKNGKEVD-RSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeCCcEee-eecCCCCHHHHHHHHHhhC
Confidence 99998887 8899999999999998753
No 36
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.88 E-value=1.6e-21 Score=122.63 Aligned_cols=97 Identities=25% Similarity=0.524 Sum_probs=84.7
Q ss_pred ccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecC
Q psy12669 35 DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114 (157)
Q Consensus 35 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 114 (157)
++|+++ .++++++|.||++||++|+.+.|.++++++.++.. ..++.++.+|++..++++++|+|+++|++++|++|
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~---~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~ 82 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS---GSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD 82 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc---CCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC
Confidence 677775 46789999999999999999999999999988543 24599999999999999999999999999999766
Q ss_pred ccceeeeccccCHHHHHHHHHHH
Q psy12669 115 SIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 115 ~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
. .. ++.|..+.+.+.+|+++.
T Consensus 83 ~-~~-~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 L-AY-NYRGPRTKDDIVEFANRV 103 (104)
T ss_pred C-ce-eecCCCCHHHHHHHHHhh
Confidence 4 44 799999999999999874
No 37
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.86 E-value=2.9e-21 Score=119.98 Aligned_cols=99 Identities=30% Similarity=0.674 Sum_probs=88.7
Q ss_pred ecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEE
Q psy12669 31 ELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 31 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 110 (157)
+++.++|.+.+.++++++|.||++||++|+.+.+.|.++++.++. ..++.++.+|++++..++++|+|+++|++++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG----DGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc----CCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 578889999998888999999999999999999999999988741 2579999999999999999999999999999
Q ss_pred EecC-ccceeeeccccCHHHHHHHH
Q psy12669 111 MRHG-SIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 111 ~~~g-~~~~~~~~g~~~~~~l~~~l 134 (157)
|++| .... +|.|..+.+.+.+|+
T Consensus 78 ~~~~~~~~~-~~~g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPV-KYEGPRTLESLVEFI 101 (101)
T ss_pred EcCCCcccc-cCCCCcCHHHHHhhC
Confidence 9877 5555 899999999998874
No 38
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.86 E-value=8.2e-21 Score=125.62 Aligned_cols=99 Identities=15% Similarity=0.265 Sum_probs=86.8
Q ss_pred cccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC--hhhHhhCCCCCCCeEEEE
Q psy12669 34 TDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY--ESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 34 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~P~~~~~ 111 (157)
...|+++++++++++|+||++||++|+.+.|.+.++++.+ .+++.|+.||++.. .+++++|+|.++|++++|
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~------~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~ 83 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKY------GDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFL 83 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHh------ccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEE
Confidence 4577888889999999999999999999999999999887 45577888777754 578999999999999999
Q ss_pred e-cCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 112 R-HGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 112 ~-~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
. +|+.+. ++.|....+.|.+++.+.+.
T Consensus 84 ~~~G~~v~-~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 84 DREGNEEG-QSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCCCCEEE-EEeCCCCHHHHHHHHHHHHc
Confidence 5 788888 89999999999999999875
No 39
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.86 E-value=5.9e-21 Score=124.84 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=85.7
Q ss_pred CcccHHHhh--ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEE-
Q psy12669 33 DTDNVDYVR--DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVK- 109 (157)
Q Consensus 33 ~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~- 109 (157)
+..+|++.+ .++++++|.|||+||++|+.+.|.++++++++ .+.+.|++||+|++++++.+|+|++.|+++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~------~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ 83 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETI------KNFAVIYLVDITEVPDFNTMYELYDPCTVMF 83 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHc------CCceEEEEEECCCCHHHHHHcCccCCCcEEE
Confidence 357888876 46789999999999999999999999999998 566889999999999999999999776666
Q ss_pred EEecCc-cceeeecc--------ccCHHHHHHHHHHHcC
Q psy12669 110 IMRHGS-IEKLEYRR--------ERTVEALVKYVREELM 139 (157)
Q Consensus 110 ~~~~g~-~~~~~~~g--------~~~~~~l~~~l~~~~~ 139 (157)
+|++|+ .++ +..| ..+.++|.+-++....
T Consensus 84 ffk~g~~~vd-~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 84 FFRNKHIMID-LGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEECCeEEEE-EecccccccccccCCHHHHHHHHHHHHH
Confidence 889998 666 8888 5778888888877644
No 40
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.86 E-value=4e-21 Score=122.43 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=81.5
Q ss_pred CceeecCc-ccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCC
Q psy12669 27 SQVIELDT-DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105 (157)
Q Consensus 27 ~~v~~l~~-~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 105 (157)
+.+.+++. ++|++.++++++++|+||++||++|+.+.|.++++++.+ .++.|++||.++.++++++|+|.++
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-------~~i~f~~Vd~~~~~~l~~~~~v~~v 76 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-------LETKFIKVNAEKAPFLVEKLNIKVL 76 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-------CCCEEEEEEcccCHHHHHHCCCccC
Confidence 46777777 899999988899999999999999999999999999886 4589999999999999999999999
Q ss_pred CeEEEEecCccceeeeccc
Q psy12669 106 PTVKIMRHGSIEKLEYRRE 124 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~ 124 (157)
||+++|++|+.+. ++.|.
T Consensus 77 Pt~l~fk~G~~v~-~~~g~ 94 (113)
T cd02989 77 PTVILFKNGKTVD-RIVGF 94 (113)
T ss_pred CEEEEEECCEEEE-EEECc
Confidence 9999999999887 66554
No 41
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.86 E-value=3.2e-21 Score=121.23 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=82.4
Q ss_pred ccHHHhhccCCeEEEEEecCCChHHHhhhHHH---HHHHHHHHhcCCCCCceEEEEEeCCC----ChhhHhhCCCCCCCe
Q psy12669 35 DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTF---DEVLVTLINLLPEPRKFAITKINCDD----YESVCEDYNIVKYPT 107 (157)
Q Consensus 35 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~P~ 107 (157)
+.|+++++++++++|.||++||++|+.+.+.+ .++++.+ .+++.++.+|+++ ..+++++|++.++||
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~------~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pt 75 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAAL------KKDVVLLRADWTKNDPEITALLKRFGVFGPPT 75 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHH------hCCeEEEEEecCCCCHHHHHHHHHcCCCCCCE
Confidence 56888889999999999999999999999988 5777776 3479999999987 568899999999999
Q ss_pred EEEEe--cCccceeeeccccCHHHHHHHHH
Q psy12669 108 VKIMR--HGSIEKLEYRRERTVEALVKYVR 135 (157)
Q Consensus 108 ~~~~~--~g~~~~~~~~g~~~~~~l~~~l~ 135 (157)
+++|+ +|+.+. ++.|..+.++|.++++
T Consensus 76 i~~~~~~~g~~~~-~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 76 YLFYGPGGEPEPL-RLPGFLTADEFLEALE 104 (104)
T ss_pred EEEECCCCCCCCc-ccccccCHHHHHHHhC
Confidence 99998 677776 8999999999998873
No 42
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.86 E-value=2.3e-21 Score=123.69 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=80.5
Q ss_pred CceeecCcccHHHhhccC---CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCC
Q psy12669 27 SQVIELDTDNVDYVRDNY---DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIV 103 (157)
Q Consensus 27 ~~v~~l~~~~~~~~~~~~---~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~ 103 (157)
+.+.+++.++|++.+.+. ++++|+||++||++|+.+.|.++++++.+ .++.|++||++++ +++++|+|+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-------~~v~f~~vd~~~~-~l~~~~~i~ 75 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-------PETKFVKINAEKA-FLVNYLDIK 75 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-------CCcEEEEEEchhh-HHHHhcCCC
Confidence 467889999999877544 89999999999999999999999999986 3589999999998 999999999
Q ss_pred CCCeEEEEecCccceeeecccc
Q psy12669 104 KYPTVKIMRHGSIEKLEYRRER 125 (157)
Q Consensus 104 ~~P~~~~~~~g~~~~~~~~g~~ 125 (157)
++||+++|++|+.+. ++.|..
T Consensus 76 ~~Pt~~~f~~G~~v~-~~~G~~ 96 (113)
T cd02957 76 VLPTLLVYKNGELID-NIVGFE 96 (113)
T ss_pred cCCEEEEEECCEEEE-EEecHH
Confidence 999999999999998 787743
No 43
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.85 E-value=1.4e-20 Score=116.82 Aligned_cols=94 Identities=17% Similarity=0.340 Sum_probs=82.0
Q ss_pred CcccHHHhhccC--CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEE
Q psy12669 33 DTDNVDYVRDNY--DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 33 ~~~~~~~~~~~~--~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 110 (157)
+.++|++.+... ++++|+||++||++|+.+.+.++++++.+ ..++.++.+|+++.++++++|++.++||+++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~------~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 74 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA------FPSVLFLSIEAEELPEISEKFEITAVPTFVF 74 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh------CCceEEEEEccccCHHHHHhcCCccccEEEE
Confidence 356788877655 89999999999999999999999999886 3579999999999999999999999999999
Q ss_pred EecCccceeeeccccCHHHHHHHH
Q psy12669 111 MRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 111 ~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
|++|+.+. ++.|. +.+.|.+.+
T Consensus 75 ~~~g~~~~-~~~g~-~~~~l~~~~ 96 (97)
T cd02984 75 FRNGTIVD-RVSGA-DPKELAKKV 96 (97)
T ss_pred EECCEEEE-EEeCC-CHHHHHHhh
Confidence 99999887 78884 566776654
No 44
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.85 E-value=3.7e-20 Score=118.21 Aligned_cols=101 Identities=26% Similarity=0.464 Sum_probs=82.0
Q ss_pred ceeecCcccHHHhhc-cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC--ChhhHhhCCCCC
Q psy12669 28 QVIELDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD--YESVCEDYNIVK 104 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~ 104 (157)
++.+++.++|++.+. .+++++|.||++||++|+.+.|.|+++++.+++. .+.+.++.+||+. +.+++++|+|++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~---~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW---RPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc---CCceEEEEEeccchhhHHHHHhCCCCC
Confidence 678999999998764 4569999999999999999999999999988543 2469999999864 568999999999
Q ss_pred CCeEEEEecCccce---eeeccc-cCHHHHH
Q psy12669 105 YPTVKIMRHGSIEK---LEYRRE-RTVEALV 131 (157)
Q Consensus 105 ~P~~~~~~~g~~~~---~~~~g~-~~~~~l~ 131 (157)
+|++++|++|.... ..|.|. +..+.+.
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHHH
Confidence 99999999886442 345665 5455443
No 45
>KOG0907|consensus
Probab=99.85 E-value=1.2e-20 Score=118.17 Aligned_cols=86 Identities=23% Similarity=0.482 Sum_probs=76.2
Q ss_pred ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeee
Q psy12669 42 DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEY 121 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~ 121 (157)
.++++++|+|||+|||+|+.+.|.+.+++.++ .+ +.|++||+|+..++++.++|+..||+++|++|+.+. ++
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y------~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~-~~ 90 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKY------PD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD-EV 90 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHC------CC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE-EE
Confidence 34689999999999999999999999999998 44 999999999999999999999999999999999998 89
Q ss_pred ccccCHHHHHHHHHH
Q psy12669 122 RRERTVEALVKYVRE 136 (157)
Q Consensus 122 ~g~~~~~~l~~~l~~ 136 (157)
.|.... .+.+.+..
T Consensus 91 vGa~~~-~l~~~i~~ 104 (106)
T KOG0907|consen 91 VGANKA-ELEKKIAK 104 (106)
T ss_pred ecCCHH-HHHHHHHh
Confidence 985444 66666554
No 46
>PLN02309 5'-adenylylsulfate reductase
Probab=99.85 E-value=2.7e-20 Score=142.54 Aligned_cols=107 Identities=21% Similarity=0.491 Sum_probs=93.5
Q ss_pred CCceeecCcccHHHhh---ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC-CChhhHh-hC
Q psy12669 26 NSQVIELDTDNVDYVR---DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD-DYESVCE-DY 100 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~-~~ 100 (157)
...+.+++.++|++++ +.+++++|.||++||++|+.+.|.|.++++.++ ..++.|+++|++ .+.+++. +|
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~-----~~~V~f~kVD~d~~~~~la~~~~ 418 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLA-----GSGVKVAKFRADGDQKEFAKQEL 418 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhc-----cCCeEEEEEECCCcchHHHHhhC
Confidence 4688999999999876 578899999999999999999999999999984 235999999999 7788886 69
Q ss_pred CCCCCCeEEEEecCccceeeecc-ccCHHHHHHHHHHH
Q psy12669 101 NIVKYPTVKIMRHGSIEKLEYRR-ERTVEALVKYVREE 137 (157)
Q Consensus 101 ~i~~~P~~~~~~~g~~~~~~~~g-~~~~~~l~~~l~~~ 137 (157)
+|.++||+++|++|......|.| .++.++|..|++..
T Consensus 419 ~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 419 QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999999999988765557875 69999999999864
No 47
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.84 E-value=3.2e-20 Score=142.19 Aligned_cols=108 Identities=19% Similarity=0.440 Sum_probs=91.4
Q ss_pred CCCceeecCcccHHHhhc---cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-hhH-hh
Q psy12669 25 NNSQVIELDTDNVDYVRD---NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-SVC-ED 99 (157)
Q Consensus 25 ~~~~v~~l~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~-~~ 99 (157)
.+..+.+|+.+||++.++ .+++++|.||++||++|+.+.|.|+++++.++ ...+.|+.||++.+. +++ ++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~-----~~~v~~~kVdvD~~~~~~~~~~ 423 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLA-----GSGVKVAKFRADGDQKEFAKQE 423 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhc-----cCCcEEEEEECCCCccHHHHHH
Confidence 356899999999999774 78899999999999999999999999999984 224899999999763 454 68
Q ss_pred CCCCCCCeEEEEecCccceeeec-cccCHHHHHHHHHHH
Q psy12669 100 YNIVKYPTVKIMRHGSIEKLEYR-RERTVEALVKYVREE 137 (157)
Q Consensus 100 ~~i~~~P~~~~~~~g~~~~~~~~-g~~~~~~l~~~l~~~ 137 (157)
|+|.++||+++|++|......|. |.++.+.|..|++..
T Consensus 424 ~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 424 LQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999999999998865444687 589999999999753
No 48
>PTZ00102 disulphide isomerase; Provisional
Probab=99.84 E-value=3.5e-20 Score=144.39 Aligned_cols=113 Identities=20% Similarity=0.405 Sum_probs=100.3
Q ss_pred CCceeecCcccHHHh-hccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCC
Q psy12669 26 NSQVIELDTDNVDYV-RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK 104 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~-~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~ 104 (157)
...+..++.++|++. .+.+++++|.|||+||++|+.+.|.|+++++.+++. +.+.++.+|++.+...++++++++
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~----~~v~~~~id~~~~~~~~~~~~v~~ 431 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN----DSIIVAKMNGTANETPLEEFSWSA 431 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC----CcEEEEEEECCCCccchhcCCCcc
Confidence 346889999999986 578889999999999999999999999999887432 469999999999999999999999
Q ss_pred CCeEEEEecCccceeeeccccCHHHHHHHHHHHcCCCc
Q psy12669 105 YPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPT 142 (157)
Q Consensus 105 ~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 142 (157)
+||+++|++|+.+..+|.|.++.+.+.+|+.++...+.
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred cCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 99999999887775589999999999999999987543
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.84 E-value=4.4e-20 Score=114.68 Aligned_cols=89 Identities=16% Similarity=0.334 Sum_probs=81.7
Q ss_pred hhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCcccee
Q psy12669 40 VRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKL 119 (157)
Q Consensus 40 ~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~ 119 (157)
+.+.+++++|.||++||+.|+.+.|.++++++.+ .+++.+..+|++++++++++++|.++|++++|++|+.+.
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~------~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~- 81 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEF------DGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK- 81 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHh------CCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE-
Confidence 3467889999999999999999999999999887 457999999999999999999999999999999998887
Q ss_pred eeccccCHHHHHHHHH
Q psy12669 120 EYRRERTVEALVKYVR 135 (157)
Q Consensus 120 ~~~g~~~~~~l~~~l~ 135 (157)
++.|..+.+.+.+|++
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 9999999999998873
No 50
>KOG4277|consensus
Probab=99.84 E-value=3.7e-21 Score=137.42 Aligned_cols=113 Identities=22% Similarity=0.437 Sum_probs=95.2
Q ss_pred ceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCe
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 107 (157)
.+..|+++ |.+. +.++.|+|.||||||++|++..|.|+++...+++.+ ..+.++++||+..+.++.+++|++|||
T Consensus 29 ~VeDLddk-Fkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig---~PikVGKlDaT~f~aiAnefgiqGYPT 103 (468)
T KOG4277|consen 29 AVEDLDDK-FKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG---LPIKVGKLDATRFPAIANEFGIQGYPT 103 (468)
T ss_pred hhhhhhHH-hhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcC---CceeecccccccchhhHhhhccCCCce
Confidence 45555432 3333 355689999999999999999999999998887663 579999999999999999999999999
Q ss_pred EEEEecCccceeeeccccCHHHHHHHHHHHcCCCceeccC
Q psy12669 108 VKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPE 147 (157)
Q Consensus 108 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~ 147 (157)
+.+|++|..+. |.|.+..+.|..|..+..++-+..+++
T Consensus 104 Ik~~kgd~a~d--YRG~R~Kd~iieFAhR~a~aiI~pi~e 141 (468)
T KOG4277|consen 104 IKFFKGDHAID--YRGGREKDAIIEFAHRCAAAIIEPINE 141 (468)
T ss_pred EEEecCCeeee--cCCCccHHHHHHHHHhcccceeeecCh
Confidence 99999988886 999999999999999988765555544
No 51
>PTZ00051 thioredoxin; Provisional
Probab=99.83 E-value=6.4e-20 Score=114.01 Aligned_cols=90 Identities=24% Similarity=0.478 Sum_probs=80.3
Q ss_pred CcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEe
Q psy12669 33 DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMR 112 (157)
Q Consensus 33 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 112 (157)
+.++++++++.+++++|+||++||++|+.+.+.++++++.+ .++.++.+|++++.+++++|+++++|++++|+
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-------~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-------TKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-------CCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 34688888889999999999999999999999999999874 46999999999999999999999999999999
Q ss_pred cCccceeeeccccCHHHHH
Q psy12669 113 HGSIEKLEYRRERTVEALV 131 (157)
Q Consensus 113 ~g~~~~~~~~g~~~~~~l~ 131 (157)
+|+.+. ++.|. ..++|.
T Consensus 80 ~g~~~~-~~~G~-~~~~~~ 96 (98)
T PTZ00051 80 NGSVVD-TLLGA-NDEALK 96 (98)
T ss_pred CCeEEE-EEeCC-CHHHhh
Confidence 999998 89985 555554
No 52
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=4.1e-19 Score=121.15 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=86.1
Q ss_pred CCceeecCc-ccHHHhhccC---CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCC
Q psy12669 26 NSQVIELDT-DNVDYVRDNY---DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYN 101 (157)
Q Consensus 26 ~~~v~~l~~-~~~~~~~~~~---~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~ 101 (157)
-+.+.+++. ++|.+.+.+. .+++|+||++||++|+.+.|.+..++..+ ..+.|++||+++. +++.+|+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-------~~vkF~kVd~d~~-~l~~~f~ 132 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-------PAVKFCKIRASAT-GASDEFD 132 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-------CCeEEEEEeccch-hhHHhCC
Confidence 467889998 9999877543 38999999999999999999999999986 4699999999987 8999999
Q ss_pred CCCCCeEEEEecCccceeeeccc-------cCHHHHHHHHHH
Q psy12669 102 IVKYPTVKIMRHGSIEKLEYRRE-------RTVEALVKYVRE 136 (157)
Q Consensus 102 i~~~P~~~~~~~g~~~~~~~~g~-------~~~~~l~~~l~~ 136 (157)
|.++||+++|++|+.+. ++.|. .+.++|..++.+
T Consensus 133 v~~vPTlllyk~G~~v~-~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 133 TDALPALLVYKGGELIG-NFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCCCCEEEEEECCEEEE-EEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999999999886 56543 445666666654
No 53
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.81 E-value=2.5e-19 Score=112.39 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=72.0
Q ss_pred cccHHHhhc--cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEE
Q psy12669 34 TDNVDYVRD--NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 34 ~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 111 (157)
.+++++.+. ++++++|.|+++||++|+.+.|.++++++++ .+.+.|++||.++.+++++.|+|+..||+++|
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~------~~~~~f~kVDVDev~dva~~y~I~amPtfvff 75 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDL------SKMASIYLVDVDKVPVYTQYFDISYIPSTIFF 75 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHc------cCceEEEEEeccccHHHHHhcCceeCcEEEEE
Confidence 356776553 6889999999999999999999999999998 34499999999999999999999999999999
Q ss_pred ecCccceeee
Q psy12669 112 RHGSIEKLEY 121 (157)
Q Consensus 112 ~~g~~~~~~~ 121 (157)
++|+-+...+
T Consensus 76 kngkh~~~d~ 85 (114)
T cd02986 76 FNGQHMKVDY 85 (114)
T ss_pred ECCcEEEEec
Confidence 9998765444
No 54
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.81 E-value=5.8e-19 Score=107.70 Aligned_cols=92 Identities=18% Similarity=0.393 Sum_probs=83.6
Q ss_pred ccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecC
Q psy12669 35 DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114 (157)
Q Consensus 35 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 114 (157)
++|++.+..+++++|.||++||++|+.+.+.+.++++. .+++.++.+|+++..+++++|++.++|++++|++|
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 73 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-------YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG 73 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-------CCCceEEEEECCCChhHHHhcCcccccEEEEEECC
Confidence 36788787779999999999999999999999999877 25799999999999999999999999999999999
Q ss_pred ccceeeeccccCHHHHHHHH
Q psy12669 115 SIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 115 ~~~~~~~~g~~~~~~l~~~l 134 (157)
+.+. .+.|..+.+.|.+|+
T Consensus 74 ~~~~-~~~g~~~~~~l~~~i 92 (93)
T cd02947 74 KEVD-RVVGADPKEELEEFL 92 (93)
T ss_pred EEEE-EEecCCCHHHHHHHh
Confidence 8887 889988889999887
No 55
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.81 E-value=6e-19 Score=113.73 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=82.0
Q ss_pred CceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-----------h
Q psy12669 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-----------S 95 (157)
Q Consensus 27 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------~ 95 (157)
.++..++.+++.+.+++++.++|+|+++|||+|+.+.|.+.+++++. ++.++.+|.+.+. +
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--------~~~~y~vdvd~~~~~~~~~~~~~~~ 77 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--------KAPIYYIDSENNGSFEMSSLNDLTA 77 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--------CCcEEEEECCCccCcCcccHHHHHH
Confidence 35677888899999989999999999999999999999999999873 3567777777442 4
Q ss_pred hHhhCC----CCCCCeEEEEecCccceeeecc-ccCHHHHHHHHH
Q psy12669 96 VCEDYN----IVKYPTVKIMRHGSIEKLEYRR-ERTVEALVKYVR 135 (157)
Q Consensus 96 ~~~~~~----i~~~P~~~~~~~g~~~~~~~~g-~~~~~~l~~~l~ 135 (157)
+.++|+ +.++||+++|++|+.+. +..| ..+.++|.+|+.
T Consensus 78 ~~~~~~i~~~i~~~PT~v~~k~Gk~v~-~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 78 FRSRFGIPTSFMGTPTFVHITDGKQVS-VRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHHHcCCcccCCCCCEEEEEeCCeEEE-EEeCCCCCHHHHHHHhh
Confidence 446655 55699999999999998 8888 466899988864
No 56
>KOG0190|consensus
Probab=99.80 E-value=1.4e-19 Score=138.35 Aligned_cols=107 Identities=23% Similarity=0.437 Sum_probs=93.7
Q ss_pred CceeecCcccHHHh-hccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCC
Q psy12669 27 SQVIELDTDNVDYV-RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105 (157)
Q Consensus 27 ~~v~~l~~~~~~~~-~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 105 (157)
+++..+-.+||+++ .+.++.+||.||||||+||+++.|.|+++++.+++. .++.++++|.+.+. .....+.++
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~----~~vviAKmDaTaNd--~~~~~~~~f 439 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD----ENVVIAKMDATAND--VPSLKVDGF 439 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCC----CCcEEEEecccccc--Ccccccccc
Confidence 57999999999985 588999999999999999999999999999999763 57999999999886 445678889
Q ss_pred CeEEEEecCccc-eeeeccccCHHHHHHHHHHHcC
Q psy12669 106 PTVKIMRHGSIE-KLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 106 P~~~~~~~g~~~-~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
|||.+|+.|... +..|.|.++.+++..|+.+...
T Consensus 440 PTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 440 PTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 999999966632 3469999999999999998865
No 57
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.80 E-value=1.2e-18 Score=112.95 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=82.6
Q ss_pred ccHHHhhccC-CeEEEEEecCCChHHHhhhHHHH---HHHHHHHhcCCCCCceEEEEEeCCCC-------------hhhH
Q psy12669 35 DNVDYVRDNY-DFVLILFYVKWCRFSVAMLPTFD---EVLVTLINLLPEPRKFAITKINCDDY-------------ESVC 97 (157)
Q Consensus 35 ~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~~v~~~~vd~~~~-------------~~~~ 97 (157)
+.++++.+++ ++++|.||++||++|+.+.+.+. .+.+.+ .+++.++.+|.+.+ .+++
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~------~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~ 77 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYI------RAHFVVVYINIDGDKEVTDFDGEALSEKELA 77 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHH------HhheEEEEEEccCCceeeccCCCCccHHHHH
Confidence 4566777888 99999999999999999999885 555565 34688999998864 6889
Q ss_pred hhCCCCCCCeEEEEec--CccceeeeccccCHHHHHHHHHHHcCC
Q psy12669 98 EDYNIVKYPTVKIMRH--GSIEKLEYRRERTVEALVKYVREELMD 140 (157)
Q Consensus 98 ~~~~i~~~P~~~~~~~--g~~~~~~~~g~~~~~~l~~~l~~~~~~ 140 (157)
++|+|.++|++++|.+ |+.+. ++.|..+.+.+.++++.....
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~-~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIA-RLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeE-EecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999985 46666 899999999999999887653
No 58
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.79 E-value=1.9e-18 Score=110.07 Aligned_cols=96 Identities=11% Similarity=0.172 Sum_probs=82.1
Q ss_pred HHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCcc
Q psy12669 37 VDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSI 116 (157)
Q Consensus 37 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 116 (157)
|.+.+.++..++|.||++||++|+.+.|.+++++..+ +.+.+..+|.+++++++++|+|+++||+++|++|+.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-------~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~ 87 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-------DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGK 87 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-------CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCee
Confidence 4444567778999999999999999999999998774 468999999999999999999999999999997654
Q ss_pred c-eeeeccccCHHHHHHHHHHHcC
Q psy12669 117 E-KLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 117 ~-~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
. ..++.|..+.+++.+|+...+.
T Consensus 88 ~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 88 DGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred cceEEEEecCchHHHHHHHHHHHh
Confidence 3 2368999999999999987653
No 59
>KOG0908|consensus
Probab=99.77 E-value=3.7e-18 Score=118.87 Aligned_cols=101 Identities=14% Similarity=0.249 Sum_probs=89.4
Q ss_pred CcccHHHhhc--cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEE
Q psy12669 33 DTDNVDYVRD--NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 33 ~~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 110 (157)
++.+|+..+. +.+.++|.|++.||++|+++.|.|..++.+| .+..|.+||+++.+..+..+||...||+++
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-------p~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-------PGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC-------cccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 4578887664 5569999999999999999999999999998 458899999999999999999999999999
Q ss_pred EecCccceeeeccccCHHHHHHHHHHHcCCCc
Q psy12669 111 MRHGSIEKLEYRRERTVEALVKYVREELMDPT 142 (157)
Q Consensus 111 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 142 (157)
|.+|..+. ++.| .++..|...+.++.....
T Consensus 81 f~ng~kid-~~qG-Ad~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 81 FRNGVKID-QIQG-ADASGLEEKVAKYASTSA 110 (288)
T ss_pred EecCeEee-eecC-CCHHHHHHHHHHHhccCc
Confidence 99999999 8888 678888888888876543
No 60
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.75 E-value=1.6e-17 Score=114.75 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=83.5
Q ss_pred CCceeecCcccHHHhh-cc--CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCC
Q psy12669 26 NSQVIELDTDNVDYVR-DN--YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNI 102 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~-~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i 102 (157)
-+.+.+++..+|...+ .. +.+++|+||++||++|+.+.|.|.+++..+ ..+.|++||+++. ..+|++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-------~~vkFvkI~ad~~---~~~~~i 150 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-------PDTKFVKIISTQC---IPNYPD 150 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-------CCCEEEEEEhHHh---HhhCCC
Confidence 4688999999998644 33 348999999999999999999999999996 4699999999864 578999
Q ss_pred CCCCeEEEEecCccceeeeccc-------cCHHHHHHHHHH
Q psy12669 103 VKYPTVKIMRHGSIEKLEYRRE-------RTVEALVKYVRE 136 (157)
Q Consensus 103 ~~~P~~~~~~~g~~~~~~~~g~-------~~~~~l~~~l~~ 136 (157)
+++||+++|++|+.+. ++.|. .+.++|..++.+
T Consensus 151 ~~lPTlliyk~G~~v~-~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 151 KNLPTILVYRNGDIVK-QFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCEEEEEECCEEEE-EEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999999987 77663 456667666654
No 61
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=1.9e-17 Score=128.37 Aligned_cols=112 Identities=23% Similarity=0.456 Sum_probs=95.0
Q ss_pred CCceeecCcccHHHhh-ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCC
Q psy12669 26 NSQVIELDTDNVDYVR-DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK 104 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~ 104 (157)
...+..++.++|++.+ +.+++++|.||++||++|+.+.|.+.++++.++.. ..++.++.+|++++. ... +++++
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~i~~~~id~~~n~-~~~-~~i~~ 419 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDA---ESDVVIAKMDATAND-VPP-FEVEG 419 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcC---CCcEEEEEEECCCCc-cCC-CCccc
Confidence 3468889999999865 67889999999999999999999999999998532 126999999999865 344 99999
Q ss_pred CCeEEEEecCccc-eeeeccccCHHHHHHHHHHHcCCCc
Q psy12669 105 YPTVKIMRHGSIE-KLEYRRERTVEALVKYVREELMDPT 142 (157)
Q Consensus 105 ~P~~~~~~~g~~~-~~~~~g~~~~~~l~~~l~~~~~~~~ 142 (157)
+|++++|++|... ..++.|..+.+.|.+|+.+....+.
T Consensus 420 ~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 420 FPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred cCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 9999999988763 3479999999999999999886554
No 62
>KOG0191|consensus
Probab=99.73 E-value=3.2e-17 Score=124.67 Aligned_cols=114 Identities=29% Similarity=0.605 Sum_probs=96.7
Q ss_pred ceeecCcccH-HHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 28 QVIELDTDNV-DYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 28 ~v~~l~~~~~-~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
....++..++ +.....+++++|.||+|||++|+++.|+|.++++.+ ++.+.++.|||+.+.++|++|+|+++|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l------~~~~~~~~vd~~~~~~~~~~y~i~gfP 103 (383)
T KOG0191|consen 30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKAL------KGKVKIGAVDCDEHKDLCEKYGIQGFP 103 (383)
T ss_pred chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHh------cCceEEEEeCchhhHHHHHhcCCccCc
Confidence 3444444444 456678889999999999999999999999999998 568999999999999999999999999
Q ss_pred eEEEEecCccceeeeccccCHHHHHHHHHHHcCCCceeccCc
Q psy12669 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEE 148 (157)
Q Consensus 107 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 148 (157)
|+.+|.+|... ..|.|..+.+.+..|....+.+........
T Consensus 104 tl~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (383)
T KOG0191|consen 104 TLKVFRPGKKP-IDYSGPRNAESLAEFLIKELEPSVKKLVEG 144 (383)
T ss_pred EEEEEcCCCce-eeccCcccHHHHHHHHHHhhccccccccCC
Confidence 99999999333 379999999999999999988776655443
No 63
>KOG1731|consensus
Probab=99.73 E-value=9.6e-18 Score=128.56 Aligned_cols=111 Identities=20% Similarity=0.399 Sum_probs=89.9
Q ss_pred CCCceeecCcccHHHhhc-cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC--CChhhHhhCC
Q psy12669 25 NNSQVIELDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD--DYESVCEDYN 101 (157)
Q Consensus 25 ~~~~v~~l~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~ 101 (157)
...++..|+.++|+.++. .++..+|+||++|||+|+.+.|+|.++++++.+. ..-+.++.|||- .|..+|++|+
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W---~~vv~vaaVdCA~~~N~~lCRef~ 113 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKW---RPVVRVAAVDCADEENVKLCREFS 113 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcc---cceeEEEEeeccchhhhhhHhhcC
Confidence 357899999999998774 4458999999999999999999999999999776 578999999996 5678999999
Q ss_pred CCCCCeEEEEecCccc---eeeeccccCHHHHHHHHHHHc
Q psy12669 102 IVKYPTVKIMRHGSIE---KLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 102 i~~~P~~~~~~~g~~~---~~~~~g~~~~~~l~~~l~~~~ 138 (157)
|+++|++.+|+.+... +..+.|.....++.+.+.+.+
T Consensus 114 V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 114 VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 9999999999755332 224556555666666665543
No 64
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.73 E-value=8e-17 Score=100.85 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=78.3
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCC--CCCeEEEEec--Cccce
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIV--KYPTVKIMRH--GSIEK 118 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~--~~P~~~~~~~--g~~~~ 118 (157)
.++++++.|+++||++|+.+.|.+.++++++ ++++.|+.+|+++++.+++.|++. ++|+++++++ |+...
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~------~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKF------KGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYL 84 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHh------CCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccC
Confidence 3688999999999999999999999999999 678999999999999999999999 9999999997 65554
Q ss_pred eeeccccCHHHHHHHHHHH
Q psy12669 119 LEYRRERTVEALVKYVREE 137 (157)
Q Consensus 119 ~~~~g~~~~~~l~~~l~~~ 137 (157)
...|..+.+.|.+|+.+.
T Consensus 85 -~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 85 -MPEEELTAESLEEFVEDF 102 (103)
T ss_pred -CCccccCHHHHHHHHHhh
Confidence 344556999999999875
No 65
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.72 E-value=9.2e-17 Score=102.52 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=73.9
Q ss_pred CcccHHHhhcc--CCeEEEEEec-------CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-------Chhh
Q psy12669 33 DTDNVDYVRDN--YDFVLILFYV-------KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-------YESV 96 (157)
Q Consensus 33 ~~~~~~~~~~~--~~~~lv~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~~~~ 96 (157)
+.++|++.+.. +++++|.||| +||++|+.+.|.+++++..+ ++++.|++||+++ +.++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~------~~~v~fv~Vdvd~~~~w~d~~~~~ 81 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAA------PEDCVFIYCDVGDRPYWRDPNNPF 81 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHC------CCCCEEEEEEcCCcccccCcchhh
Confidence 45667776654 6799999999 99999999999999999987 4579999999976 4588
Q ss_pred HhhCCCC-CCCeEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 97 CEDYNIV-KYPTVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 97 ~~~~~i~-~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
.++++|. ++||+++|+.|+.+. -..=.+++.+..|+
T Consensus 82 ~~~~~I~~~iPT~~~~~~~~~l~--~~~c~~~~~~~~~~ 118 (119)
T cd02952 82 RTDPKLTTGVPTLLRWKTPQRLV--EDECLQADLVEMFF 118 (119)
T ss_pred HhccCcccCCCEEEEEcCCceec--chhhcCHHHHHHhh
Confidence 9999998 999999998775443 11124666665554
No 66
>PTZ00062 glutaredoxin; Provisional
Probab=99.70 E-value=1.9e-16 Score=109.90 Aligned_cols=93 Identities=6% Similarity=0.083 Sum_probs=80.6
Q ss_pred CcccHHHhhccC-CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEE
Q psy12669 33 DTDNVDYVRDNY-DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 33 ~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 111 (157)
+.+++++.++++ +.++++|||+||++|+.+.|.+.++++++ .++.|+.||.+ |+|.++|++++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-------~~~~F~~V~~d--------~~V~~vPtfv~~ 69 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-------PSLEFYVVNLA--------DANNEYGVFEFY 69 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-------CCcEEEEEccc--------cCcccceEEEEE
Confidence 456777777654 77999999999999999999999999996 56999999977 999999999999
Q ss_pred ecCccceeeeccccCHHHHHHHHHHHcCCCc
Q psy12669 112 RHGSIEKLEYRRERTVEALVKYVREELMDPT 142 (157)
Q Consensus 112 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 142 (157)
++|+.+. |+.|. ++..+.+++.+...+..
T Consensus 70 ~~g~~i~-r~~G~-~~~~~~~~~~~~~~~~~ 98 (204)
T PTZ00062 70 QNSQLIN-SLEGC-NTSTLVSFIRGWAQKGS 98 (204)
T ss_pred ECCEEEe-eeeCC-CHHHHHHHHHHHcCCCC
Confidence 9999999 99984 58889999888776543
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.70 E-value=3e-16 Score=94.27 Aligned_cols=81 Identities=23% Similarity=0.363 Sum_probs=71.2
Q ss_pred EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccccC
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERT 126 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~ 126 (157)
.+..||++||++|+.+.|.++++++.+ +..+.+..+|.+++++.+++|+++++|++++ +|+ . ++.|..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~------~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~-~~~G~~~ 70 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEM------GDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--V-EFIGAPT 70 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHh------cCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--E-EEecCCC
Confidence 356899999999999999999999887 4569999999999999999999999999976 665 3 6889999
Q ss_pred HHHHHHHHHHHc
Q psy12669 127 VEALVKYVREEL 138 (157)
Q Consensus 127 ~~~l~~~l~~~~ 138 (157)
.+.+.+++.+.+
T Consensus 71 ~~~l~~~l~~~~ 82 (82)
T TIGR00411 71 KEELVEAIKKRL 82 (82)
T ss_pred HHHHHHHHHhhC
Confidence 999999988753
No 68
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.70 E-value=9.3e-16 Score=102.32 Aligned_cols=91 Identities=13% Similarity=0.208 Sum_probs=67.5
Q ss_pred HhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC------------hhhH-hhC---CC
Q psy12669 39 YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY------------ESVC-EDY---NI 102 (157)
Q Consensus 39 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------~~~~-~~~---~i 102 (157)
+....++..+|+||++||++|+++.|.++++++++ ++.+..|+.+.. .+.. +.| ++
T Consensus 45 ~~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~--------~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v 116 (153)
T TIGR02738 45 RHANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF--------GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP 116 (153)
T ss_pred hhhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHc--------CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCC
Confidence 33445667899999999999999999999999886 244555555432 2222 345 78
Q ss_pred CCCCeEEEEe-cCccceeeeccccCHHHHHHHHHHH
Q psy12669 103 VKYPTVKIMR-HGSIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 103 ~~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
.++|+++++. +|+.+..++.|..+.+.+.+.+.+.
T Consensus 117 ~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 117 VVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 9999999996 4554433689999999998888764
No 69
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.68 E-value=1.4e-16 Score=101.97 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=70.8
Q ss_pred cHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-hhHhhCCCCC--CCeEEEEe
Q psy12669 36 NVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-SVCEDYNIVK--YPTVKIMR 112 (157)
Q Consensus 36 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~i~~--~P~~~~~~ 112 (157)
.++....++++++|.||++||++|+.+.|.+.+...... ....|..+|.+.++ ...+.|++.+ +||+++|.
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~------~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~ 84 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE------LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLD 84 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh------hcCcEEEEEecCCCCchhhhcccCCCccceEEEEC
Confidence 344455788999999999999999999999998776542 12345556665543 4457889876 99999996
Q ss_pred -cCccce--eeeccccCHHHHHHHHHHHcC
Q psy12669 113 -HGSIEK--LEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 113 -~g~~~~--~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+|+.+. ....|..+.+.+...+....+
T Consensus 85 ~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 85 PSGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCCCchhhccCCCCccccccCCCHHHHHh
Confidence 888765 145666777777766665543
No 70
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.66 E-value=2.3e-15 Score=117.03 Aligned_cols=91 Identities=15% Similarity=0.310 Sum_probs=74.4
Q ss_pred hccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEE----------------------------eCCC
Q psy12669 41 RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKI----------------------------NCDD 92 (157)
Q Consensus 41 ~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~v----------------------------d~~~ 92 (157)
++++++++|+|||+||++|+.+.|.+.+++++++. .++.++.| +++.
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-----~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~ 127 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-----SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN 127 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-----CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc
Confidence 45788999999999999999999999999988741 23444433 3445
Q ss_pred ChhhHhhCCCCCCCeEEEE-ecCccceeeeccccCHHHHHHHHHHH
Q psy12669 93 YESVCEDYNIVKYPTVKIM-RHGSIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 93 ~~~~~~~~~i~~~P~~~~~-~~g~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
+.++++.|+|+++|+++++ ++|+.+. ++.|..+.+.|.++|+..
T Consensus 128 ~~~lak~fgV~giPTt~IIDkdGkIV~-~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 128 GGTLAQSLNISVYPSWAIIGKDGDVQR-IVKGSISEAQALALIRNP 172 (521)
T ss_pred cHHHHHHcCCCCcCeEEEEcCCCeEEE-EEeCCCCHHHHHHHHHHh
Confidence 5678889999999999777 5788877 899999999999999843
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.65 E-value=1.2e-15 Score=107.53 Aligned_cols=90 Identities=13% Similarity=0.234 Sum_probs=76.6
Q ss_pred CCeEEEEEec---CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceee
Q psy12669 44 YDFVLILFYV---KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLE 120 (157)
Q Consensus 44 ~~~~lv~f~~---~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~ 120 (157)
+...++.|++ +||++|+.+.|.+++++..+. +-.+.++.+|.+++++++++|+|.++||+++|++|+.+..+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~ 93 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIR 93 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEE
Confidence 4445666888 999999999999999998872 12366777777799999999999999999999999987448
Q ss_pred eccccCHHHHHHHHHHHc
Q psy12669 121 YRRERTVEALVKYVREEL 138 (157)
Q Consensus 121 ~~g~~~~~~l~~~l~~~~ 138 (157)
+.|..+.+.+.+|+...+
T Consensus 94 ~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 94 YTGIPAGYEFAALIEDIV 111 (215)
T ss_pred EeecCCHHHHHHHHHHHH
Confidence 999999999999998875
No 72
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.65 E-value=1.9e-14 Score=98.09 Aligned_cols=103 Identities=20% Similarity=0.376 Sum_probs=81.1
Q ss_pred eeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC----------------
Q psy12669 29 VIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD---------------- 92 (157)
Q Consensus 29 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------- 92 (157)
+..++.+.+....-.+++++|+||++||++|+...+.+.++.+++++ .++.++.++++.
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~-----~~~~vi~i~~d~~~~~~~~~~~~~~~~~ 120 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE-----KGVEIIAVNVDETELAVKNFVNRYGLTF 120 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc-----CCeEEEEEEcCCCHHHHHHHHHHhCCCc
Confidence 44555555543223678899999999999999999999999999852 347788888753
Q ss_pred ------ChhhHhhCCCCCCCeEEEEe-cCccceeeeccccCHHHHHHHHHHH
Q psy12669 93 ------YESVCEDYNIVKYPTVKIMR-HGSIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 93 ------~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
+.++++.|++.++|+++++. +|+.+. .+.|..+.+++.+++.+.
T Consensus 121 ~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~-~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 121 PVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVK-VITGEMTEEQLEEYLEKI 171 (173)
T ss_pred eEEECCcchHHHHcCCCCcCeEEEECCCCcEEE-EEeCCCCHHHHHHHHHHh
Confidence 34667899999999999996 666665 789999999999998764
No 73
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.64 E-value=9e-15 Score=116.05 Aligned_cols=103 Identities=14% Similarity=0.211 Sum_probs=81.7
Q ss_pred eeecC-cccHHHhh----ccCCeEEEEEecCCChHHHhhhHHH---HHHHHHHHhcCCCCCceEEEEEeCCCC----hhh
Q psy12669 29 VIELD-TDNVDYVR----DNYDFVLILFYVKWCRFSVAMLPTF---DEVLVTLINLLPEPRKFAITKINCDDY----ESV 96 (157)
Q Consensus 29 v~~l~-~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~~ 96 (157)
..+++ .+++++.+ +++++++|+||++||++|+.+++.. +++.+.+ +++.+.++|++++ .++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-------~~~~~v~vDvt~~~~~~~~l 526 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-------ADTVLLQADVTANNAEDVAL 526 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-------cCCEEEEEECCCCChhhHHH
Confidence 34443 45666654 3578999999999999999999875 5666665 3588999999864 578
Q ss_pred HhhCCCCCCCeEEEEe-cCccc-eeeeccccCHHHHHHHHHHHc
Q psy12669 97 CEDYNIVKYPTVKIMR-HGSIE-KLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 97 ~~~~~i~~~P~~~~~~-~g~~~-~~~~~g~~~~~~l~~~l~~~~ 138 (157)
+++|++.++|++++|+ +|+.+ ..++.|..+++++.+++++..
T Consensus 527 ~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 527 LKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 8999999999999997 77774 237899999999999998753
No 74
>KOG0191|consensus
Probab=99.62 E-value=4e-15 Score=113.27 Aligned_cols=109 Identities=24% Similarity=0.413 Sum_probs=97.3
Q ss_pred ceeecCcccHHHhh-ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 28 QVIELDTDNVDYVR-DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 28 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
.+..++..+|+... +.+.+++|.||+|||++|+.+.|+|++++..+.. ...+.++.+|++....++.+++++++|
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~----~~~v~~~~~d~~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS----KENVELGKIDATVHKSLASRLEVRGYP 220 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc----CcceEEEeeccchHHHHhhhhcccCCc
Confidence 48999999999854 5677899999999999999999999999998853 257999999999889999999999999
Q ss_pred eEEEEecCcc-ceeeeccccCHHHHHHHHHHHcCCC
Q psy12669 107 TVKIMRHGSI-EKLEYRRERTVEALVKYVREELMDP 141 (157)
Q Consensus 107 ~~~~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~~~ 141 (157)
++.+|++|.. .. .+.|.++.+.+..|+.+.....
T Consensus 221 t~~~f~~~~~~~~-~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 221 TLKLFPPGEEDIY-YYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred eEEEecCCCcccc-cccccccHHHHHHHHHhhcCCC
Confidence 9999998888 55 6889999999999999998763
No 75
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.62 E-value=5.8e-15 Score=104.15 Aligned_cols=96 Identities=14% Similarity=0.233 Sum_probs=78.9
Q ss_pred eecCcccHHHhhccCCe-EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeE
Q psy12669 30 IELDTDNVDYVRDNYDF-VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTV 108 (157)
Q Consensus 30 ~~l~~~~~~~~~~~~~~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~ 108 (157)
..++.++.+.+.+-+++ .++.||++||++|+.+.+.+++++... +++.+..+|.+++++++++|+|.++||+
T Consensus 118 ~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-------~~i~~~~vD~~~~~~~~~~~~V~~vPtl 190 (215)
T TIGR02187 118 PGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-------DKILGEMIEANENPDLAEKYGVMSVPKI 190 (215)
T ss_pred CCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-------CceEEEEEeCCCCHHHHHHhCCccCCEE
Confidence 35566666665544444 555599999999999999998888773 5799999999999999999999999999
Q ss_pred EEEecCccceeeeccccCHHHHHHHHHH
Q psy12669 109 KIMRHGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 109 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
+++++|. ++.|....+.+.+|+.+
T Consensus 191 ~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 191 VINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred EEecCCE----EEECCCCHHHHHHHHHh
Confidence 9998774 28899999999999875
No 76
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.61 E-value=3e-14 Score=98.32 Aligned_cols=89 Identities=12% Similarity=0.174 Sum_probs=70.8
Q ss_pred ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-----------------------hhHh
Q psy12669 42 DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-----------------------SVCE 98 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~ 98 (157)
..+++++|+||++||++|++..|.+.++.+. ++.++.|+.++++ .+.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 136 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGL 136 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHH
Confidence 3688999999999999999999999887532 3667777765432 2344
Q ss_pred hCCCCCCCeEEEEe-cCccceeeeccccCHHHHHHHHHHHcCC
Q psy12669 99 DYNIVKYPTVKIMR-HGSIEKLEYRRERTVEALVKYVREELMD 140 (157)
Q Consensus 99 ~~~i~~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~~~~~ 140 (157)
.|++.++|+.+++. +|+... ++.|..+.+.+.+++...+..
T Consensus 137 ~~gv~~~P~t~vid~~G~i~~-~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 137 DLGVYGAPETFLIDGNGIIRY-RHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred hcCCCcCCeEEEECCCceEEE-EEecCCCHHHHHHHHHHHHHH
Confidence 68999999888885 777666 899999999999999887754
No 77
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.61 E-value=1e-14 Score=93.94 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=71.7
Q ss_pred CcccHHHhhccCCeEEEEEecCCChHHHhhhHHH---HHHHHHHHhcCCCCCceEEEEEeCCCChhhHh--------hCC
Q psy12669 33 DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTF---DEVLVTLINLLPEPRKFAITKINCDDYESVCE--------DYN 101 (157)
Q Consensus 33 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~--------~~~ 101 (157)
+++.++++.+++++++|.|+++||++|+.+.+.. .++...+ ..++.++++|.++.+++++ .|+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l------~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~ 77 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL------NENFVPIKVDREERPDVDKIYMNAAQAMTG 77 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH------hCCEEEEEEeCCcCcHHHHHHHHHHHHhcC
Confidence 4566788889999999999999999999998743 4566665 3468899999998877765 358
Q ss_pred CCCCCeEEEEe-cCccceeeeccc-----cCHHHHHHHHHH
Q psy12669 102 IVKYPTVKIMR-HGSIEKLEYRRE-----RTVEALVKYVRE 136 (157)
Q Consensus 102 i~~~P~~~~~~-~g~~~~~~~~g~-----~~~~~l~~~l~~ 136 (157)
+.++|+++++. +|+.+. ...+. .+...+.+++.+
T Consensus 78 ~~G~Pt~vfl~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 78 QGGWPLNVFLTPDLKPFF-GGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred CCCCCEEEEECCCCCEEe-eeeecCCCCcCCCcCHHHHHHH
Confidence 99999999996 677663 33222 333455555544
No 78
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.59 E-value=7.7e-15 Score=93.19 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=65.7
Q ss_pred ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC--------------------hhhHhhCC
Q psy12669 42 DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY--------------------ESVCEDYN 101 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------------~~~~~~~~ 101 (157)
.+++++++.||++||++|+++.+.+.......... ..++.+..++++.. .+++++++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYL---KDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE---HCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh---hcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence 36789999999999999999999998654422111 23578888888753 35788999
Q ss_pred CCCCCeEEEEe-cCccceeeeccccCHHHHHHHH
Q psy12669 102 IVKYPTVKIMR-HGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 102 i~~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l 134 (157)
|.++||++++. +|+.+. ++.|..++++|.+++
T Consensus 80 v~gtPt~~~~d~~G~~v~-~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVY-RIPGYLSPEELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSCEEE-EEESS--HHHHHHHH
T ss_pred CCccCEEEEEcCCCCEEE-EecCCCCHHHHHhhC
Confidence 99999999996 788887 899999999998875
No 79
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.59 E-value=4.3e-14 Score=91.28 Aligned_cols=109 Identities=8% Similarity=0.096 Sum_probs=94.2
Q ss_pred ceeecCcccHHHhhccCCeEEEEEecCC--ChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCC
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYVKW--CRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 105 (157)
+...++..++++++..++..++.|-.+- ++.+....-.++++++++. ..++.+++||.+++++++.+|+|+++
T Consensus 18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~-----~~~v~~akVDiD~~~~LA~~fgV~si 92 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-----DYTWQVAIADLEQSEAIGDRFGVFRF 92 (132)
T ss_pred CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhc-----CCceEEEEEECCCCHHHHHHcCCccC
Confidence 6677788999999988887777665432 6777788889999999982 24599999999999999999999999
Q ss_pred CeEEEEecCccceeeeccccCHHHHHHHHHHHcCCCc
Q psy12669 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPT 142 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 142 (157)
||+++|++|+.+. +..|..+.+.+.+||.+.+..+.
T Consensus 93 PTLl~FkdGk~v~-~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 93 PATLVFTGGNYRG-VLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred CEEEEEECCEEEE-EEeCcCCHHHHHHHHHHHhcCcC
Confidence 9999999999999 89999999999999999988653
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.56 E-value=6.2e-14 Score=101.83 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=73.2
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-----------ChhhHhhCCCCCCCeEEEE
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-----------YESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-----------~~~~~~~~~i~~~P~~~~~ 111 (157)
.+++++|+||++||++|+.+.|.+.++++++ + +.+..|+.+. +..++++++|.++|+++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y------g--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv 236 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY------G--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLA 236 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHc------C--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEE
Confidence 4789999999999999999999999999987 2 5555555543 3567899999999999999
Q ss_pred ec-CccceeeeccccCHHHHHHHHHHHcC
Q psy12669 112 RH-GSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 112 ~~-g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
++ |+.+.....|..+.+.|.+.+.....
T Consensus 237 ~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 237 DPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred ECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 86 66554356799999999999988765
No 81
>PHA02125 thioredoxin-like protein
Probab=99.55 E-value=5.3e-14 Score=83.18 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=56.8
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccc-cC
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRE-RT 126 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~-~~ 126 (157)
++.||++||++|+.+.|.++++. +.++.||.++..+++++|+|.++||++ +|+.+. ++.|. .+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~-~~~G~~~~ 65 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD-RFTGVPRN 65 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE-EEeCCCCc
Confidence 68999999999999999986432 457899999999999999999999987 677776 78885 34
Q ss_pred HHHHHHH
Q psy12669 127 VEALVKY 133 (157)
Q Consensus 127 ~~~l~~~ 133 (157)
..+|.+-
T Consensus 66 ~~~l~~~ 72 (75)
T PHA02125 66 VAELKEK 72 (75)
T ss_pred HHHHHHH
Confidence 4555543
No 82
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.54 E-value=3.6e-13 Score=91.98 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=69.5
Q ss_pred ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeC-----------------------CCChhhHh
Q psy12669 42 DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINC-----------------------DDYESVCE 98 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~-----------------------~~~~~~~~ 98 (157)
.++++++|+||++||++|+++.|.++++.+. ++.++.|+. |.+.++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~ 131 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGL 131 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHH
Confidence 4678999999999999999999999887643 244444443 33345667
Q ss_pred hCCCCCCCeEEEE-ecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 99 DYNIVKYPTVKIM-RHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 99 ~~~i~~~P~~~~~-~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
.|++.++|+.+++ ++|+.+. ++.|..+.+++.+++.+.+.
T Consensus 132 ~~~v~~~P~~~~id~~G~i~~-~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 132 DLGVYGAPETFLVDGNGVILY-RHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred hcCCeeCCeEEEEcCCceEEE-EEeccCCHHHHHHHHHHHhh
Confidence 8899999987777 4787776 89999999999999998874
No 83
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.54 E-value=6.2e-14 Score=102.21 Aligned_cols=124 Identities=15% Similarity=0.294 Sum_probs=93.6
Q ss_pred CCCceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhH-------HHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH
Q psy12669 25 NNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLP-------TFDEVLVTLINLLPEPRKFAITKINCDDYESVC 97 (157)
Q Consensus 25 ~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~ 97 (157)
+...+..|+.+||++++++.+..+|+||.|-- ..+.... .++-.|+.+. ...+.|+.||..++..++
T Consensus 32 GkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE-----~~gigfg~VD~~Kd~klA 105 (383)
T PF01216_consen 32 GKDRVIDLNEKNFKRALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLE-----DKGIGFGMVDSKKDAKLA 105 (383)
T ss_dssp SS--CEEE-TTTHHHHHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCG-----GCTEEEEEEETTTTHHHH
T ss_pred CccceEEcchhHHHHHHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhcc-----ccCcceEEeccHHHHHHH
Confidence 44689999999999999999999999999873 3333322 2333344443 457999999999999999
Q ss_pred hhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHHHHcCCCceeccCccccccccc
Q psy12669 98 EDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENLVNVEN 156 (157)
Q Consensus 98 ~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 156 (157)
+++|+...+++.+|++|+.+. |.|.++++.++.|+...+..|+..+.+..|++.|+|
T Consensus 106 KKLgv~E~~SiyVfkd~~~IE--ydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ 162 (383)
T PF01216_consen 106 KKLGVEEEGSIYVFKDGEVIE--YDGERSADTLVEFLLDLLEDPVEIINNKHELKAFER 162 (383)
T ss_dssp HHHT--STTEEEEEETTEEEE--E-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH
T ss_pred HhcCccccCcEEEEECCcEEE--ecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhh
Confidence 999999999999999999997 999999999999999999999999999888887765
No 84
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.53 E-value=1.1e-13 Score=81.98 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=57.9
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccc-cCH
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRE-RTV 127 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~-~~~ 127 (157)
|.||++||++|+.+.|.++++++++ +..+.+..+| +.+.+.+|++.++|++++ +|+.+ +.|. .+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~------~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~---~~G~~~~~ 68 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEEL------GIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV---IMGKIPSK 68 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHc------CCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE---EEeccCCH
Confidence 7899999999999999999999997 4568887777 244478899999999988 77655 5664 455
Q ss_pred HHHHHHH
Q psy12669 128 EALVKYV 134 (157)
Q Consensus 128 ~~l~~~l 134 (157)
+.+.+++
T Consensus 69 ~~l~~~l 75 (76)
T TIGR00412 69 EEIKEIL 75 (76)
T ss_pred HHHHHHh
Confidence 7777765
No 85
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.52 E-value=1.5e-13 Score=89.13 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=65.1
Q ss_pred cHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEe-----------------------CCC
Q psy12669 36 NVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN-----------------------CDD 92 (157)
Q Consensus 36 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~ 92 (157)
.+.....++++++|+||++||++|++..|.++++.+.+ ++.++.|+ ++.
T Consensus 17 ~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--------~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~ 88 (127)
T cd03010 17 TLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG--------RVPIYGINYKDNPENALAWLARHGNPYAAVGFDP 88 (127)
T ss_pred cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--------CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECC
Confidence 34333335789999999999999999999999987664 25555554 344
Q ss_pred ChhhHhhCCCCCCCeEEEE-ecCccceeeeccccCHHHH
Q psy12669 93 YESVCEDYNIVKYPTVKIM-RHGSIEKLEYRRERTVEAL 130 (157)
Q Consensus 93 ~~~~~~~~~i~~~P~~~~~-~~g~~~~~~~~g~~~~~~l 130 (157)
..++++.|++.++|+.+++ ++|+.+. ++.|..+.+.|
T Consensus 89 ~~~~~~~~~v~~~P~~~~ld~~G~v~~-~~~G~~~~~~~ 126 (127)
T cd03010 89 DGRVGIDLGVYGVPETFLIDGDGIIRY-KHVGPLTPEVW 126 (127)
T ss_pred cchHHHhcCCCCCCeEEEECCCceEEE-EEeccCChHhc
Confidence 4567788999999977777 4787776 89998887654
No 86
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.51 E-value=9.1e-13 Score=89.67 Aligned_cols=85 Identities=12% Similarity=0.171 Sum_probs=67.1
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-------------hhhHhhCCC--CCCCeEEEEe
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-------------ESVCEDYNI--VKYPTVKIMR 112 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------~~~~~~~~i--~~~P~~~~~~ 112 (157)
+|.||++||++|+++.|.+.++++++ ++.+..|+.++. ..+.+.|++ .++|+.+++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~--------g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId 144 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY--------GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVN 144 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc--------CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEe
Confidence 78899999999999999999999986 255555555532 235567885 6999999996
Q ss_pred -cCccceeeeccccCHHHHHHHHHHHcCC
Q psy12669 113 -HGSIEKLEYRRERTVEALVKYVREELMD 140 (157)
Q Consensus 113 -~g~~~~~~~~g~~~~~~l~~~l~~~~~~ 140 (157)
+|+.+...+.|..+.+++.+.+.+.+.-
T Consensus 145 ~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 145 VNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred CCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 6666432699999999999999888764
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.51 E-value=2.7e-13 Score=88.47 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=58.5
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC------------------------hhhHh
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY------------------------ESVCE 98 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~ 98 (157)
.+++++|+||++||++|++..|.+.++.+++++.. .++.++.++.+.. ..+++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESG---KNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNR 93 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcC---CCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHH
Confidence 57899999999999999999999999998886441 3566776666643 34667
Q ss_pred hCCCCCCCeEEEEe-cCccce
Q psy12669 99 DYNIVKYPTVKIMR-HGSIEK 118 (157)
Q Consensus 99 ~~~i~~~P~~~~~~-~g~~~~ 118 (157)
.|++.++|+++++. +|+.+.
T Consensus 94 ~~~v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 94 TFKIEGIPTLIILDADGEVVT 114 (131)
T ss_pred HcCCCCCCEEEEECCCCCEEc
Confidence 89999999999997 666554
No 88
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.49 E-value=3.4e-13 Score=89.16 Aligned_cols=76 Identities=16% Similarity=0.346 Sum_probs=59.8
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcC--CCCCceEEEEEeCCCCh-------------------------h
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLL--PEPRKFAITKINCDDYE-------------------------S 95 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~~~v~~~~vd~~~~~-------------------------~ 95 (157)
++++++|+|||+||++|+++.|.+.++.+++++.+ ....++.++.|+.+.+. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 57899999999999999999999999998886532 00235888888877532 4
Q ss_pred hHhhCCCCCCCeEEEEe-cCccce
Q psy12669 96 VCEDYNIVKYPTVKIMR-HGSIEK 118 (157)
Q Consensus 96 ~~~~~~i~~~P~~~~~~-~g~~~~ 118 (157)
++++|++.++|+++++. +|+.+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 56678999999999997 665554
No 89
>KOG0914|consensus
Probab=99.49 E-value=1e-13 Score=95.08 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=80.9
Q ss_pred hcccCCCCceeec-CcccHHHhhccC--CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhh
Q psy12669 20 VVGSVNNSQVIEL-DTDNVDYVRDNY--DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESV 96 (157)
Q Consensus 20 ~~~~~~~~~v~~l-~~~~~~~~~~~~--~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~ 96 (157)
...+.++..+..+ +++.+++.++++ ..|+|.|++.|.+.|+.+.|.+.+++.+|+ .+.+.|++||+...++.
T Consensus 117 eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn-----~~~lkFGkvDiGrfpd~ 191 (265)
T KOG0914|consen 117 EPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYN-----NNLLKFGKVDIGRFPDV 191 (265)
T ss_pred ccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhC-----CCCCcccceeeccCcCh
Confidence 3455667889999 556667777544 479999999999999999999999999986 45799999999999999
Q ss_pred HhhCCCC------CCCeEEEEecCccceeee
Q psy12669 97 CEDYNIV------KYPTVKIMRHGSIEKLEY 121 (157)
Q Consensus 97 ~~~~~i~------~~P~~~~~~~g~~~~~~~ 121 (157)
+.+|+|. ..||+++|.+|+.+. |.
T Consensus 192 a~kfris~s~~srQLPT~ilFq~gkE~~-Rr 221 (265)
T KOG0914|consen 192 AAKFRISLSPGSRQLPTYILFQKGKEVS-RR 221 (265)
T ss_pred HHheeeccCcccccCCeEEEEccchhhh-cC
Confidence 9999876 489999999999875 44
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.48 E-value=6e-13 Score=85.77 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=69.7
Q ss_pred ecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEe---------------------
Q psy12669 31 ELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN--------------------- 89 (157)
Q Consensus 31 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd--------------------- 89 (157)
.++.+.+......+++++|.||++||++|+.+.|.+.++++.++ +..+.+|
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--------~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--------VVSVALRSGDDGAVARFMQKKGYGFPVI 78 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--------EEEEEccCCCHHHHHHHHHHcCCCccEE
Confidence 34455555544456899999999999999999999998887641 2222222
Q ss_pred CCCChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHH
Q psy12669 90 CDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVK 132 (157)
Q Consensus 90 ~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~ 132 (157)
.+.+.+++++|++.++|+++++.+++... ++.|..+.+.|.+
T Consensus 79 ~d~~~~~~~~~~i~~~P~~~vid~~gi~~-~~~g~~~~~~~~~ 120 (123)
T cd03011 79 NDPDGVISARWGVSVTPAIVIVDPGGIVF-VTTGVTSEWGLRL 120 (123)
T ss_pred ECCCcHHHHhCCCCcccEEEEEcCCCeEE-EEeccCCHHHHHh
Confidence 23445789999999999999998666444 8899999988865
No 91
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.48 E-value=1.1e-12 Score=89.78 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=63.5
Q ss_pred ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEE------EEEeCCCC----------------------
Q psy12669 42 DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI------TKINCDDY---------------------- 93 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~------~~vd~~~~---------------------- 93 (157)
-.+++.+|+|||.||++|+...|.+.+++.+ ++.+ ..||.++.
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~ 127 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWS 127 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---------CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcc
Confidence 4689999999999999999999999999543 2444 55565542
Q ss_pred -------hhhHhhCCCCCCCeE-EEEe-cCccceeeeccccCHHHHHHHH
Q psy12669 94 -------ESVCEDYNIVKYPTV-KIMR-HGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 94 -------~~~~~~~~i~~~P~~-~~~~-~g~~~~~~~~g~~~~~~l~~~l 134 (157)
......|++.+.|+. +++. +|+... ++.|..+.+++.+.+
T Consensus 128 ~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~-~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 128 QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKF-VKEGALSDSDIQTVI 176 (184)
T ss_pred eEEECCcchHHHhcCCCCCCceEEEECCCCcEEE-EEeCCCCHHHHHHHH
Confidence 234567899999888 6775 666666 899998888877633
No 92
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.45 E-value=1.7e-12 Score=82.83 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=76.4
Q ss_pred HhhccCCeEEEEEecCCChHHHhhhHH-H--HHHHHHHHhcCCCCCceEEEEEeCCC--ChhhHhhCCCCCCCeEEEEe-
Q psy12669 39 YVRDNYDFVLILFYVKWCRFSVAMLPT-F--DEVLVTLINLLPEPRKFAITKINCDD--YESVCEDYNIVKYPTVKIMR- 112 (157)
Q Consensus 39 ~~~~~~~~~lv~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~- 112 (157)
.+.+++++++|+|+++||++|+.+... | +.+.+.+ ..+..+..+|.+. ..++++.|++.++|+++++.
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l------~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~ 85 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFI------RENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDP 85 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHH------HhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeC
Confidence 344678999999999999999999874 4 4566666 3457788888874 45788999999999999996
Q ss_pred -cCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 113 -HGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 113 -~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+|+.+. +..|..+++.+.+.+.+...
T Consensus 86 ~~g~~l~-~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 86 RTGEVLK-VWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred ccCcEeE-EEcCCCCHHHHHHHHHHHHh
Confidence 477777 89999999999999888653
No 93
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.45 E-value=1.7e-12 Score=80.00 Aligned_cols=67 Identities=21% Similarity=0.404 Sum_probs=54.1
Q ss_pred CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-------------------------hhHh
Q psy12669 44 YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-------------------------SVCE 98 (157)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~~~~ 98 (157)
+++++|+||++||++|++..|.+.++.+.+++ ++++.++.|..++.. .+.+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~----~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK----KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLK 76 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT----TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHH
Confidence 58999999999999999999999999999953 157899988888652 4567
Q ss_pred hCCCCCCCeEEEEecC
Q psy12669 99 DYNIVKYPTVKIMRHG 114 (157)
Q Consensus 99 ~~~i~~~P~~~~~~~g 114 (157)
.|++.++|+++++.+.
T Consensus 77 ~~~i~~iP~~~lld~~ 92 (95)
T PF13905_consen 77 KYGINGIPTLVLLDPD 92 (95)
T ss_dssp HTT-TSSSEEEEEETT
T ss_pred HCCCCcCCEEEEECCC
Confidence 7999999999999743
No 94
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.44 E-value=1.3e-12 Score=85.38 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=57.5
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-------------------------hhH
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-------------------------SVC 97 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~~~ 97 (157)
++++++|+||++||++|+...|.+.++++.+++.. .++.+..|+.+... .+.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~---~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 92 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEG---KNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE 92 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcC---CCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH
Confidence 57899999999999999999999999998886431 35777777766432 345
Q ss_pred hhCCCCCCCeEEEEe-cCccce
Q psy12669 98 EDYNIVKYPTVKIMR-HGSIEK 118 (157)
Q Consensus 98 ~~~~i~~~P~~~~~~-~g~~~~ 118 (157)
+.|++.++|+++++. +|+.+.
T Consensus 93 ~~~~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 93 KQFKVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred HHcCCCCCCEEEEECCCCCEEc
Confidence 679999999999997 565443
No 95
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.43 E-value=1.8e-12 Score=100.65 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=82.4
Q ss_pred eecCcc-cHHHhhccCC--eEEEEEecCCChHHHhhhHHHH-HHHHHHHhcCCCCCceEEEEEeCCCC----hhhHhhCC
Q psy12669 30 IELDTD-NVDYVRDNYD--FVLILFYVKWCRFSVAMLPTFD-EVLVTLINLLPEPRKFAITKINCDDY----ESVCEDYN 101 (157)
Q Consensus 30 ~~l~~~-~~~~~~~~~~--~~lv~f~~~~C~~C~~~~~~~~-~~~~~~~~~~~~~~~v~~~~vd~~~~----~~~~~~~~ 101 (157)
..++.. .+++.+.+++ +++|+|||+||-.||.+++..- +.....+ -.++...++|++++ .++-++|+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-----~~~~vlLqaDvT~~~p~~~~lLk~~~ 531 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-----LQDVVLLQADVTANDPAITALLKRLG 531 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-----cCCeEEEEeeecCCCHHHHHHHHHcC
Confidence 455554 7777776666 9999999999999999999664 3333322 35799999999976 36678999
Q ss_pred CCCCCeEEEEe-cCccceeeeccccCHHHHHHHHHHHc
Q psy12669 102 IVKYPTVKIMR-HGSIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 102 i~~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
+-+.|++++|+ +|++.. ...|..+++.+.+++++..
T Consensus 532 ~~G~P~~~ff~~~g~e~~-~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPE-ILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCCEEEEECCCCCcCc-CCcceecHHHHHHHHHHhc
Confidence 99999999998 777666 5899999999999998753
No 96
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.43 E-value=1.1e-12 Score=110.38 Aligned_cols=91 Identities=15% Similarity=0.308 Sum_probs=75.6
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeC---C------------------------CChh
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINC---D------------------------DYES 95 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~---~------------------------~~~~ 95 (157)
++++++|+|||+||++|+...|.++++.+++++ .++.++.|.. + ...+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-----~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~ 493 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-----QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMY 493 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-----CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchH
Confidence 588999999999999999999999999999842 3477776642 1 2335
Q ss_pred hHhhCCCCCCCeEEEE-ecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 96 VCEDYNIVKYPTVKIM-RHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 96 ~~~~~~i~~~P~~~~~-~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+.++|++.++|+++++ ++|+.+. ++.|....+.+.+++...+.
T Consensus 494 ~~~~~~V~~iPt~ilid~~G~iv~-~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 494 LWRELGVSSWPTFAVVSPNGKLIA-QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HHHhcCCCccceEEEECCCCeEEE-EEecccCHHHHHHHHHHHHH
Confidence 6678999999999999 5888887 89999999999999988755
No 97
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.43 E-value=8.2e-13 Score=76.28 Aligned_cols=57 Identities=11% Similarity=0.369 Sum_probs=51.1
Q ss_pred EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEE
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 110 (157)
-++.|+++||++|+++.+.+++++.. ..++.+..+|.++++++++++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~-------~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAAL-------NPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHh-------CCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 36789999999999999999999766 3569999999999999999999999999855
No 98
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.42 E-value=2.3e-12 Score=81.28 Aligned_cols=86 Identities=21% Similarity=0.371 Sum_probs=68.2
Q ss_pred cCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC------------------
Q psy12669 32 LDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY------------------ 93 (157)
Q Consensus 32 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------------ 93 (157)
++.+.+...-..+++++|.||++||++|+...+.+.++.+.++ +.++.++.|+.+..
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~ 81 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK-----DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPV 81 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC-----CCCeEEEEEECCCCCHHHHHHHHHHcCCCcce
Confidence 3334444322247899999999999999999999999998874 25699999999885
Q ss_pred -----hhhHhhCCCCCCCeEEEEe-cCccceeeecc
Q psy12669 94 -----ESVCEDYNIVKYPTVKIMR-HGSIEKLEYRR 123 (157)
Q Consensus 94 -----~~~~~~~~i~~~P~~~~~~-~g~~~~~~~~g 123 (157)
.++.+.|++.++|+++++. +|+.+. ++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~-~~~g 116 (116)
T cd02966 82 LLDPDGELAKAYGVRGLPTTFLIDRDGRIRA-RHVG 116 (116)
T ss_pred EEcCcchHHHhcCcCccceEEEECCCCcEEE-EecC
Confidence 6788899999999999996 666665 6665
No 99
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.36 E-value=8.1e-12 Score=76.08 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=63.2
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeec
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYR 122 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~ 122 (157)
.++..+..|+++||++|....+.+++++... +++.+..+|.++.++.+++|+|.++|++++ +|+.+ +.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-------~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~---~~ 78 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-------PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELF---GF 78 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-------CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEE---Ee
Confidence 4555788899999999999999999999774 579999999999999999999999999964 67654 35
Q ss_pred cccCHHHH
Q psy12669 123 RERTVEAL 130 (157)
Q Consensus 123 g~~~~~~l 130 (157)
|..+.+++
T Consensus 79 G~~~~~e~ 86 (89)
T cd03026 79 GRMTLEEI 86 (89)
T ss_pred CCCCHHHH
Confidence 75555554
No 100
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.36 E-value=5.7e-12 Score=81.40 Aligned_cols=79 Identities=9% Similarity=0.148 Sum_probs=52.8
Q ss_pred HHhhccCCeEEEEEecCCChHHHhhhHHH---HHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEe-c
Q psy12669 38 DYVRDNYDFVLILFYVKWCRFSVAMLPTF---DEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMR-H 113 (157)
Q Consensus 38 ~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~-~ 113 (157)
+.+.+++++++|.|+++||++|+.+...+ .++.+.++ .++..+.++.+..+.-....+ .++||++++. +
T Consensus 17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~------~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ------EDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH------hCeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 33457899999999999999999999875 34555552 346666677653321121233 6899999996 6
Q ss_pred Cccceeeeccc
Q psy12669 114 GSIEKLEYRRE 124 (157)
Q Consensus 114 g~~~~~~~~g~ 124 (157)
|+.+. +..|.
T Consensus 90 g~vi~-~i~Gy 99 (130)
T cd02960 90 LTVRA-DITGR 99 (130)
T ss_pred CCCcc-ccccc
Confidence 65554 45543
No 101
>KOG0913|consensus
Probab=99.32 E-value=5.9e-13 Score=92.31 Aligned_cols=104 Identities=13% Similarity=0.332 Sum_probs=92.2
Q ss_pred CCceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCC
Q psy12669 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 105 (157)
.+.+..++.+|+.+++ ..-+++.|++|||+.|+...+.|+..+.--. +-.+.++.||.+-++.+.-+|-+...
T Consensus 23 ~s~~~~~~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~-----dL~v~va~VDvt~npgLsGRF~vtaL 95 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSL-----DLGVKVAKVDVTTNPGLSGRFLVTAL 95 (248)
T ss_pred cceeEEecccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccC-----CCceeEEEEEEEeccccceeeEEEec
Confidence 4689999999999998 4568999999999999999999999885543 23699999999999999999999999
Q ss_pred CeEEEEecCccceeeeccccCHHHHHHHHHHHc
Q psy12669 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
|||+..++|..- ||.|.++.+++..|+...-
T Consensus 96 ptIYHvkDGeFr--rysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 96 PTIYHVKDGEFR--RYSGARDKNDFISFEEHRE 126 (248)
T ss_pred ceEEEeeccccc--cccCcccchhHHHHHHhhh
Confidence 999999999766 5999999999999997653
No 102
>smart00594 UAS UAS domain.
Probab=99.31 E-value=4.2e-11 Score=77.26 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=73.4
Q ss_pred cCcccHHHh----hccCCeEEEEEecCCChHHHhhhHHH---HHHHHHHHhcCCCCCceEEEEEeCCC--ChhhHhhCCC
Q psy12669 32 LDTDNVDYV----RDNYDFVLILFYVKWCRFSVAMLPTF---DEVLVTLINLLPEPRKFAITKINCDD--YESVCEDYNI 102 (157)
Q Consensus 32 l~~~~~~~~----~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i 102 (157)
.-..+|+++ .+++|+++|+||++||++|+.+.... .++.+.+ ..++.+..+|.+. ..+++.+|++
T Consensus 11 f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i------~~~fv~~~~dv~~~eg~~l~~~~~~ 84 (122)
T smart00594 11 FYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI------RENFIFWQVDVDTSEGQRVSQFYKL 84 (122)
T ss_pred eeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH------HcCEEEEEecCCChhHHHHHHhcCc
Confidence 334456554 36788999999999999999998764 4556666 3457887788764 4578899999
Q ss_pred CCCCeEEEEe-cC-----ccceeeeccccCHHHHHHHH
Q psy12669 103 VKYPTVKIMR-HG-----SIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 103 ~~~P~~~~~~-~g-----~~~~~~~~g~~~~~~l~~~l 134 (157)
.++|+++++. +| ..+. ++.|..+++++..++
T Consensus 85 ~~~P~~~~l~~~~g~~~~~~~~-~~~G~~~~~~l~~~l 121 (122)
T smart00594 85 DSFPYVAIVDPRTGQRVIEWVG-VVEGEISPEELMTFL 121 (122)
T ss_pred CCCCEEEEEecCCCceeEEEec-cccCCCCHHHHHHhh
Confidence 9999999995 44 1344 789999999998876
No 103
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.4e-10 Score=75.92 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=76.4
Q ss_pred cHHHhhccCCeEEEEEecCCChHHHhhhHHH---HHHHHHHHhcCCCCCceEEEEEeCCCC----------------hhh
Q psy12669 36 NVDYVRDNYDFVLILFYVKWCRFSVAMLPTF---DEVLVTLINLLPEPRKFAITKINCDDY----------------ESV 96 (157)
Q Consensus 36 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~v~~~~vd~~~~----------------~~~ 96 (157)
+.+++.-+++..++.|-++.|.+|.++...+ .++.+.+ .+++.++.++++.+ +++
T Consensus 34 d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEyl------k~hf~~~~l~i~~skpv~f~~g~kee~~s~~EL 107 (182)
T COG2143 34 DNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYL------KEHFSAYYLNISYSKPVLFKVGDKEEKMSTEEL 107 (182)
T ss_pred HHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHH------hhCeEEEEEEeccCcceEeecCceeeeecHHHH
Confidence 3444556788999999999999999999876 4455555 45678888887643 489
Q ss_pred HhhCCCCCCCeEEEEe-cCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 97 CEDYNIVKYPTVKIMR-HGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 97 ~~~~~i~~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
++.|+++++|++++|. .|+.+. ...|...++.+..-++-...
T Consensus 108 a~kf~vrstPtfvFfdk~Gk~Il-~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 108 AQKFAVRSTPTFVFFDKTGKTIL-ELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred HHHhccccCceEEEEcCCCCEEE-ecCCCCCHHHHHHHHHHHHH
Confidence 9999999999999996 778887 78999999888776655433
No 104
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.29 E-value=2.7e-11 Score=76.96 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.0
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEE
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKI 88 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 88 (157)
++++++|.||++||++|+...|.++++++.+ .+++.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~------~~~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAE------ADWLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHh------cCCcEEEEE
Confidence 4789999999999999999999999988776 334555555
No 105
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.28 E-value=3.6e-11 Score=83.83 Aligned_cols=92 Identities=10% Similarity=0.088 Sum_probs=68.8
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-------C----hhhHhhCCC---------
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-------Y----ESVCEDYNI--------- 102 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~~~~~~~i--------- 102 (157)
++++++|.||++||++|++..|.+.++.+++++ .++.++.|+++. . .++++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-----~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~ 112 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-----LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIE 112 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-----CceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeee
Confidence 578999999999999999999999999999863 358888888741 1 123333332
Q ss_pred ---------------------------CCCC---eEEEE-ecCccceeeeccccCHHHHHHHHHHHcCC
Q psy12669 103 ---------------------------VKYP---TVKIM-RHGSIEKLEYRRERTVEALVKYVREELMD 140 (157)
Q Consensus 103 ---------------------------~~~P---~~~~~-~~g~~~~~~~~g~~~~~~l~~~l~~~~~~ 140 (157)
..+| +.+++ ++|+.+. ++.|..+.+.+.+.|.+.+..
T Consensus 113 v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~-~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 113 VNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVA-YFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred ccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEE-EeCCCCCHHHHHHHHHHHHHH
Confidence 1122 56666 5777777 899999999999999888764
No 106
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.27 E-value=7.5e-11 Score=83.89 Aligned_cols=91 Identities=12% Similarity=0.211 Sum_probs=69.5
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-------C----hhhH-hhCC---------
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-------Y----ESVC-EDYN--------- 101 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~~~-~~~~--------- 101 (157)
.+++++|.||++||++|+...|.+.++.+++++ .++.++.|+++. . .+++ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~-----~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~ 172 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT-----QGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKV 172 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc-----CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCcccccc
Confidence 568999999999999999999999999999863 348888888741 1 1222 2211
Q ss_pred -------------------------CCCCCeEEEEe-cCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 102 -------------------------IVKYPTVKIMR-HGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 102 -------------------------i~~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
++..|+.+++. +|+.+. +|.|..+++++.+.|++.+.
T Consensus 173 D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~-~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 173 DVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE-RYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE-EECCCCCHHHHHHHHHHHhc
Confidence 12348888885 777777 99999999999999988764
No 107
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.26 E-value=5.4e-11 Score=77.08 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=59.5
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC-----C----------------------Chh
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD-----D----------------------YES 95 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----~----------------------~~~ 95 (157)
++++++|+||+.||++|++..|.+.++.+++++ .++.++.|+.+ . ...
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-----~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~ 96 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-----DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYA 96 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-----CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchH
Confidence 578999999999999999999999999999852 35777777542 1 124
Q ss_pred hHhhCCCCCCCeEEEEe-cCccceeeeccc
Q psy12669 96 VCEDYNIVKYPTVKIMR-HGSIEKLEYRRE 124 (157)
Q Consensus 96 ~~~~~~i~~~P~~~~~~-~g~~~~~~~~g~ 124 (157)
+.+.|++.++|+.+++. +|+.+. .+.|.
T Consensus 97 ~~~~~~v~~~P~~~vid~~G~v~~-~~~G~ 125 (126)
T cd03012 97 TWRAYGNQYWPALYLIDPTGNVRH-VHFGE 125 (126)
T ss_pred HHHHhCCCcCCeEEEECCCCcEEE-EEecC
Confidence 55678999999999996 676665 67664
No 108
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.26 E-value=1.7e-10 Score=76.47 Aligned_cols=89 Identities=17% Similarity=0.301 Sum_probs=67.3
Q ss_pred cCcccHHHhhccCCeEEEEEecC-CChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-----------------
Q psy12669 32 LDTDNVDYVRDNYDFVLILFYVK-WCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY----------------- 93 (157)
Q Consensus 32 l~~~~~~~~~~~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----------------- 93 (157)
.+.+.+.-.--++++++|.||+. ||++|+...|.+.++.+.+++ .++.++.|..+.+
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~-----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~ 90 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD-----KGVDVVGVSSDDDPPVREFLKKYGINFPVL 90 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-----TTCEEEEEEESSSHHHHHHHHHTTTTSEEE
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc-----CceEEEEecccCCHHHHHHHHhhCCCceEE
Confidence 44444443224788999999999 999999999999999988763 4577777776654
Q ss_pred ----hhhHhhCCCC---------CCCeEEEEe-cCccceeeeccccC
Q psy12669 94 ----ESVCEDYNIV---------KYPTVKIMR-HGSIEKLEYRRERT 126 (157)
Q Consensus 94 ----~~~~~~~~i~---------~~P~~~~~~-~g~~~~~~~~g~~~ 126 (157)
..+.++|++. ++|+++++. +|+.+. .+.|..+
T Consensus 91 ~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~-~~~g~~~ 136 (146)
T PF08534_consen 91 SDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVY-RHVGPDP 136 (146)
T ss_dssp EETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEE-EEESSBT
T ss_pred echHHHHHHHhCCccccccccCCeecEEEEEECCCEEEE-EEeCCCC
Confidence 2566789988 999998886 666665 7777655
No 109
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.26 E-value=1.9e-11 Score=73.43 Aligned_cols=69 Identities=22% Similarity=0.400 Sum_probs=52.7
Q ss_pred HHHhhccCCeEEEEEecCCChHHHhhhHHH---HHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEe
Q psy12669 37 VDYVRDNYDFVLILFYVKWCRFSVAMLPTF---DEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMR 112 (157)
Q Consensus 37 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 112 (157)
+.++.+++++++|+|+++||++|+.+...+ .++.+.+ ..++....+|.+....... +...++|+++++.
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~------~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEAL------NKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHH------HHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHH------HCCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 344557899999999999999999999887 4555545 3469999999987665432 2226799999885
No 110
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=99.20 E-value=1.8e-09 Score=68.16 Aligned_cols=109 Identities=17% Similarity=0.303 Sum_probs=86.2
Q ss_pred CCceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-----ChhhHhhC
Q psy12669 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-----YESVCEDY 100 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-----~~~~~~~~ 100 (157)
..+..+|+.-+|++++.+.+.++|.|-... +--.-...|.+++++..+. ..++.++.|.+.+ |.+++++|
T Consensus 3 ~~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~---~~dLLvAeVGikDYGek~N~~Laery 77 (126)
T PF07912_consen 3 CKGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASAS---SDDLLVAEVGIKDYGEKENMELAERY 77 (126)
T ss_dssp STTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC----SSEEEEEEECBSSSS-CCHHHHHHT
T ss_pred cCceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcC---CCceEEEEeCcccccchhHHHHHHHh
Confidence 356789999999999999999999998876 6677788999999554433 4689999999874 57999999
Q ss_pred CC--CCCCeEEEEecCccceeee--ccccCHHHHHHHHHHHcC
Q psy12669 101 NI--VKYPTVKIMRHGSIEKLEY--RRERTVEALVKYVREELM 139 (157)
Q Consensus 101 ~i--~~~P~~~~~~~g~~~~~~~--~g~~~~~~l~~~l~~~~~ 139 (157)
++ ..+|.+++|..|..-+++| .|..+.+.|..|+.++.+
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 99 5699999999666666678 899999999999998865
No 111
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.19 E-value=3.5e-10 Score=78.31 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=60.5
Q ss_pred ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEe-------------C-----CCChhhHhhCCCC
Q psy12669 42 DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN-------------C-----DDYESVCEDYNIV 103 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd-------------~-----~~~~~~~~~~~i~ 103 (157)
..+++++|+||++||++|++..|.+.++.+.. ..++.++..| . ....++.+.|++.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~ 145 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVG 145 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCC
Confidence 36789999999999999999999999887653 2234433311 0 0124667789999
Q ss_pred CCCeEEEEe-cCccceeeeccc-cCHHHHHHHHHHH
Q psy12669 104 KYPTVKIMR-HGSIEKLEYRRE-RTVEALVKYVREE 137 (157)
Q Consensus 104 ~~P~~~~~~-~g~~~~~~~~g~-~~~~~l~~~l~~~ 137 (157)
++|+.+++. +|+... .|. ...+.+.+.++..
T Consensus 146 ~~P~~~lID~~G~I~~---~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 146 KIPYGVLLDQDGKIRA---KGLTNTREHLESLLEAD 178 (189)
T ss_pred ccceEEEECCCCeEEE---ccCCCCHHHHHHHHHHH
Confidence 999998886 554443 343 4567777777654
No 112
>PLN02412 probable glutathione peroxidase
Probab=99.17 E-value=3.3e-10 Score=76.94 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=69.1
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-------C-hhh----Hhh----CC-----
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-------Y-ESV----CED----YN----- 101 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~-~~~----~~~----~~----- 101 (157)
.+++++|.||++||++|++..|.+.++.+++++ .++.++.|+++. . .++ +++ |.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~-----~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~ 102 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE-----QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKV 102 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh-----CCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEE
Confidence 568999999999999999999999999999963 348888887642 1 111 111 11
Q ss_pred -------------------------CCCCCeEEEEe-cCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 102 -------------------------IVKYPTVKIMR-HGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 102 -------------------------i~~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+...|+.+++. +|+.+. ++.|..+++++...|.+.+.
T Consensus 103 d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~-~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 103 DVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQ-RYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred eeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEE-EECCCCCHHHHHHHHHHHHh
Confidence 33358888884 777776 89999999999999988764
No 113
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.13 E-value=1e-09 Score=73.47 Aligned_cols=89 Identities=21% Similarity=0.323 Sum_probs=65.4
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC-------CC----hhhHhh-CCC--------
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD-------DY----ESVCED-YNI-------- 102 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------~~----~~~~~~-~~i-------- 102 (157)
++++++|.||++||++|+...|.+.++.+++++ .++.+..++++ .. .+++++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-----~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~ 95 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP-----SHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKI 95 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-----CCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceE
Confidence 568899999999999999999999999999863 35888888862 11 122221 111
Q ss_pred ------------------CCCCe----EEEE-ecCccceeeeccccCHHHHHHHHHHH
Q psy12669 103 ------------------VKYPT----VKIM-RHGSIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 103 ------------------~~~P~----~~~~-~~g~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
.+.|+ .+++ ++|+.+. ++.|..+.+.+.+.|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~-~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 96 KILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVK-FWRPEEPVEEIRPEITAL 152 (153)
T ss_pred ecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEE-EECCCCCHHHHHHHHHHh
Confidence 13675 6666 4677776 899999999998888764
No 114
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.09 E-value=1.2e-09 Score=68.59 Aligned_cols=83 Identities=19% Similarity=0.358 Sum_probs=68.0
Q ss_pred CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC-CChhhHhhCC--CCCCCeEEEEecCccceee
Q psy12669 44 YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD-DYESVCEDYN--IVKYPTVKIMRHGSIEKLE 120 (157)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~~--i~~~P~~~~~~~g~~~~~~ 120 (157)
++++++.||++||++|+...|.+..+++.+ ...+.+..+|.. ..++....++ +..+|++.++.+|.... .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~ 104 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEY------GGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVD-R 104 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHh------cCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhh-h
Confidence 778999999999999999999999999997 346889999997 7888999999 99999999998887754 4
Q ss_pred ecc--ccCHHHHHHH
Q psy12669 121 YRR--ERTVEALVKY 133 (157)
Q Consensus 121 ~~g--~~~~~~l~~~ 133 (157)
+.+ ......+..-
T Consensus 105 ~~~~~~~~~~~~~~~ 119 (127)
T COG0526 105 LVGGKVLPKEALIDA 119 (127)
T ss_pred hhhcccCCHHHHHHH
Confidence 555 3444444433
No 115
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.08 E-value=7.5e-10 Score=74.04 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=59.8
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-------C----hhhHhh-CC---------
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-------Y----ESVCED-YN--------- 101 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~~~~~-~~--------- 101 (157)
.+++++|.||++||+ |+...|.+.++.+++++ .++.++.|+++. . .+++++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-----~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~ 94 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-----RGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKI 94 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-----CCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeE
Confidence 478999999999999 99999999999999852 358888887532 1 122222 21
Q ss_pred --------------CCCCC-----------eEEEE-ecCccceeeeccccCHHHHHHH
Q psy12669 102 --------------IVKYP-----------TVKIM-RHGSIEKLEYRRERTVEALVKY 133 (157)
Q Consensus 102 --------------i~~~P-----------~~~~~-~~g~~~~~~~~g~~~~~~l~~~ 133 (157)
+.++| +.+++ ++|+.+. ++.|..+.+.+.+.
T Consensus 95 d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~-~~~G~~~~~~l~~~ 151 (152)
T cd00340 95 DVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVK-RFAPTTDPEELEKD 151 (152)
T ss_pred eccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEE-EECCCCCHHHHHhc
Confidence 23356 56677 4777777 88998888777543
No 116
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.04 E-value=7.3e-09 Score=70.51 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=74.2
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-------C----------------------
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-------Y---------------------- 93 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~---------------------- 93 (157)
++++++++||++||+.|....+.+.++.+++++ .++.++.|..+. .
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-----~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~ 98 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-----KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDET 98 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-----CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCc
Confidence 678999999999999999999999999998852 458888887753 1
Q ss_pred hhhHhhCCCCCCCeEEEEe-cCccceeee---------ccccCHHHHHHHHHHHcCCCceecc
Q psy12669 94 ESVCEDYNIVKYPTVKIMR-HGSIEKLEY---------RRERTVEALVKYVREELMDPTIEIP 146 (157)
Q Consensus 94 ~~~~~~~~i~~~P~~~~~~-~g~~~~~~~---------~g~~~~~~l~~~l~~~~~~~~~~~~ 146 (157)
..+++.|++...|+++++. +|+.+. .. .+..+.+.+.+.|...+........
T Consensus 99 ~~~~~~~~v~~~P~~~lid~~G~v~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 160 (171)
T cd02969 99 QEVAKAYGAACTPDFFLFDPDGKLVY-RGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVP 160 (171)
T ss_pred hHHHHHcCCCcCCcEEEECCCCeEEE-eecccCCcccccccccHHHHHHHHHHHHcCCCCCcc
Confidence 2445678999999999996 665543 21 1224568899999988876655443
No 117
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.02 E-value=5e-09 Score=75.86 Aligned_cols=105 Identities=14% Similarity=0.199 Sum_probs=78.8
Q ss_pred CCceeecCc-ccHHHhhcc---CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCC
Q psy12669 26 NSQVIELDT-DNVDYVRDN---YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYN 101 (157)
Q Consensus 26 ~~~v~~l~~-~~~~~~~~~---~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~ 101 (157)
-+.+.+++. ++|-+++++ +..++|+||.+.++.|..+...|..+|..+ ..+.|.+|..+..+ +..+|.
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-------p~vKFvkI~a~~~~-~~~~f~ 195 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-------PEVKFVKIRASKCP-ASENFP 195 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--------TTSEEEEEEECGCC-TTTTS-
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-------CceEEEEEehhccC-cccCCc
Confidence 357888864 778777643 346999999999999999999999999997 67999999998865 788999
Q ss_pred CCCCCeEEEEecCccceeeecc-------ccCHHHHHHHHHHHcC
Q psy12669 102 IVKYPTVKIMRHGSIEKLEYRR-------ERTVEALVKYVREELM 139 (157)
Q Consensus 102 i~~~P~~~~~~~g~~~~~~~~g-------~~~~~~l~~~l~~~~~ 139 (157)
+...||+++|++|..+. .+.| .....+|..||.+.--
T Consensus 196 ~~~LPtllvYk~G~l~~-~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 196 DKNLPTLLVYKNGDLIG-NFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp TTC-SEEEEEETTEEEE-EECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred ccCCCEEEEEECCEEEE-eEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 99999999999998776 4543 2556789999988743
No 118
>KOG1672|consensus
Probab=99.00 E-value=1.2e-09 Score=74.06 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=79.9
Q ss_pred CCceeecC-cccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCC
Q psy12669 26 NSQVIELD-TDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK 104 (157)
Q Consensus 26 ~~~v~~l~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~ 104 (157)
-+...++. ..+|=+.......++++||-+.-..|+.+...++.+++.. -...|++||+.+.|-++.+++|+.
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-------~eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-------VETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhc-------ccceEEEEecccCceeeeeeeeeE
Confidence 34566666 5677777777888999999999999999999999999984 579999999999999999999999
Q ss_pred CCeEEEEecCccceeeeccc
Q psy12669 105 YPTVKIMRHGSIEKLEYRRE 124 (157)
Q Consensus 105 ~P~~~~~~~g~~~~~~~~g~ 124 (157)
+|++.+|++|.... ++.|.
T Consensus 138 LP~v~l~k~g~~~D-~iVGF 156 (211)
T KOG1672|consen 138 LPTVALFKNGKTVD-YVVGF 156 (211)
T ss_pred eeeEEEEEcCEEEE-EEeeH
Confidence 99999999999887 67664
No 119
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.92 E-value=1.1e-08 Score=57.28 Aligned_cols=60 Identities=27% Similarity=0.626 Sum_probs=51.5
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHh---hCCCCCCCeEEEEecC
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCE---DYNIVKYPTVKIMRHG 114 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g 114 (157)
++.||++||++|++..+.+.++ ... ..++.+..++++...+..+ .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL------NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh------CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 332 4679999999998876655 7899999999999877
No 120
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.91 E-value=5.8e-08 Score=66.49 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred CceeecCcccHHHhhccCCe-EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCC--
Q psy12669 27 SQVIELDTDNVDYVRDNYDF-VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIV-- 103 (157)
Q Consensus 27 ~~v~~l~~~~~~~~~~~~~~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~-- 103 (157)
..+.+++.+++..+...+.+ +++.|..........+...+..+++.+ .+++.|+.+|++..+++++.+++.
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~------~~~~~f~~~d~~~~~~~~~~~~i~~~ 150 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKF------KGKINFVYVDADDFPRLLKYFGIDED 150 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCT------TTTSEEEEEETTTTHHHHHHTTTTTS
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhc------CCeEEEEEeehHHhHHHHHHcCCCCc
Confidence 45899999999999988865 777787777778888888888888887 678999999999889999999998
Q ss_pred CCCeEEEEe-cCccceeeeccccCHHHHHHHHHH
Q psy12669 104 KYPTVKIMR-HGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 104 ~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
.+|+++++. .+....+...|..+.+.|.+|+++
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 899999998 333332234888999999999974
No 121
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.89 E-value=2.6e-08 Score=68.61 Aligned_cols=91 Identities=9% Similarity=0.162 Sum_probs=64.1
Q ss_pred cCCe-EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-------C-h---hh-Hhh----------
Q psy12669 43 NYDF-VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-------Y-E---SV-CED---------- 99 (157)
Q Consensus 43 ~~~~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~-~---~~-~~~---------- 99 (157)
.+++ +++.+|++||++|++..|.+.++.+++++ .++.++.|+++. . . ++ .++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-----~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d 113 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS-----QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQK 113 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh-----CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceE
Confidence 4564 45566999999999999999999999863 358888887631 0 0 01 111
Q ss_pred --------------------------CCCCCCCe---EEEE-ecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 100 --------------------------YNIVKYPT---VKIM-RHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 100 --------------------------~~i~~~P~---~~~~-~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+++.++|+ .+++ ++|+.+. ++.|..+.+.+.+.|.+.+.
T Consensus 114 ~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~-~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 114 IEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVK-YFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred EecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEE-EECCCCCHHHHHHHHHHHhc
Confidence 12446784 4666 4777777 89999999998888887653
No 122
>KOG2603|consensus
Probab=98.89 E-value=7.6e-08 Score=69.86 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=89.7
Q ss_pred CCCCceeecCcccHHHhhc-cCC--eEEEEEecC----CChHHHhhhHHHHHHHHHHHhcCCCC--CceEEEEEeCCCCh
Q psy12669 24 VNNSQVIELDTDNVDYVRD-NYD--FVLILFYVK----WCRFSVAMLPTFDEVLVTLINLLPEP--RKFAITKINCDDYE 94 (157)
Q Consensus 24 ~~~~~v~~l~~~~~~~~~~-~~~--~~lv~f~~~----~C~~C~~~~~~~~~~~~~~~~~~~~~--~~v~~~~vd~~~~~ 94 (157)
..+.+|..+++++|...+. ..+ ..+|.|.|. .|.-|+.+..++..++..+....+.. .++.|..||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 3467899999999999875 333 377788874 49999999999999999986554323 38999999999999
Q ss_pred hhHhhCCCCCCCeEEEEecCccce---eee---ccccCHHHHHHHHHHHcCC
Q psy12669 95 SVCEDYNIVKYPTVKIMRHGSIEK---LEY---RRERTVEALVKYVREELMD 140 (157)
Q Consensus 95 ~~~~~~~i~~~P~~~~~~~g~~~~---~~~---~g~~~~~~l~~~l~~~~~~ 140 (157)
+..+.+++++.|.+++|++.+.-. ..+ +-...+|++.+|+.+...-
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence 999999999999999995332211 011 1124499999999987663
No 123
>KOG2501|consensus
Probab=98.88 E-value=1.1e-08 Score=67.56 Aligned_cols=72 Identities=18% Similarity=0.414 Sum_probs=57.7
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-------------------------hhhH
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-------------------------ESVC 97 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------------~~~~ 97 (157)
.++.+.++|-|.||++|+.+-|.+.++.+.+++.. ..+.++-|.-|.+ .+++
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~---~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~ 108 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNA---APFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS 108 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcC---CceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH
Confidence 56999999999999999999999999999987663 2455666665543 2677
Q ss_pred hhCCCCCCCeEEEEe-cCccc
Q psy12669 98 EDYNIVKYPTVKIMR-HGSIE 117 (157)
Q Consensus 98 ~~~~i~~~P~~~~~~-~g~~~ 117 (157)
++|++.++|++++.+ +|..+
T Consensus 109 ~ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 109 EKYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred HhcccCcCceeEEecCCCCEe
Confidence 889999999998886 55554
No 124
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.88 E-value=2.9e-08 Score=65.17 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=64.4
Q ss_pred cCCeEEEEEe-cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC---------------------hhhHhhC
Q psy12669 43 NYDFVLILFY-VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY---------------------ESVCEDY 100 (157)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~ 100 (157)
.+++++|.|| +.||+.|....+.+.++...+++ .++.++.|..+.. ..+.+.|
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-----~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 96 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-----LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAY 96 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-----CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHh
Confidence 4788999999 58999999999999999988863 3466666655432 3556778
Q ss_pred CCCCC---------CeEEEEe-cCccceeeeccccCHHHHHHH
Q psy12669 101 NIVKY---------PTVKIMR-HGSIEKLEYRRERTVEALVKY 133 (157)
Q Consensus 101 ~i~~~---------P~~~~~~-~g~~~~~~~~g~~~~~~l~~~ 133 (157)
++... |+++++. +|+... .+.|....+.+.+-
T Consensus 97 gv~~~~~~~~~~~~p~~~lid~~G~v~~-~~~g~~~~~~~~~~ 138 (140)
T cd03017 97 GVWGEKKKKYMGIERSTFLIDPDGKIVK-VWRKVKPKGHAEEV 138 (140)
T ss_pred CCccccccccCCcceeEEEECCCCEEEE-EEecCCccchHHHH
Confidence 88887 8999996 576666 78888777666553
No 125
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.87 E-value=1.3e-08 Score=59.90 Aligned_cols=69 Identities=16% Similarity=0.362 Sum_probs=48.3
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh-----CCCCCCCeEEEEecCccceeeec
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED-----YNIVKYPTVKIMRHGSIEKLEYR 122 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~-----~~i~~~P~~~~~~~g~~~~~~~~ 122 (157)
++.||++||++|+++.+.+.+.. +.+-.+|.++++..... +++.++|++ ++.+|..+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---- 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---- 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----
Confidence 57899999999999998775443 44557888877665554 388999997 577775543
Q ss_pred cccCHHHHHHHH
Q psy12669 123 RERTVEALVKYV 134 (157)
Q Consensus 123 g~~~~~~l~~~l 134 (157)
..+..++.+.+
T Consensus 65 -~~~~~~~~~~l 75 (77)
T TIGR02200 65 -NPSAAQVKAKL 75 (77)
T ss_pred -CCCHHHHHHHh
Confidence 33444555544
No 126
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.86 E-value=1.8e-08 Score=58.62 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=51.8
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChh----hHhhCCCCCCCeEEEEecCccceeeecc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYES----VCEDYNIVKYPTVKIMRHGSIEKLEYRR 123 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~~~~~~~g 123 (157)
+..|+++||++|+...+.+.+ .++.+..+|++++++ +.+.+++.++|++++. |+. ..|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~----~~g 63 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI----IVG 63 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE----Eee
Confidence 467999999999999877643 247788899987654 4567999999999874 432 445
Q ss_pred ccCHHHHHHHHH
Q psy12669 124 ERTVEALVKYVR 135 (157)
Q Consensus 124 ~~~~~~l~~~l~ 135 (157)
.+++.|.++++
T Consensus 64 -~~~~~i~~~i~ 74 (74)
T TIGR02196 64 -FDPEKLDQLLE 74 (74)
T ss_pred -CCHHHHHHHhC
Confidence 57788888763
No 127
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.86 E-value=4.4e-08 Score=69.08 Aligned_cols=83 Identities=11% Similarity=0.181 Sum_probs=66.3
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC-----------CChhhHhhCCCCCCCeEEEE
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD-----------DYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----------~~~~~~~~~~i~~~P~~~~~ 111 (157)
.++..|+.||.+.|+.|+.+.|.+..+++.+ ++.+..|+.| .+.+++++++|..+|++++.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--------g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv 190 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY--------GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLV 190 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--------CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEE
Confidence 4678999999999999999999999999998 3555556655 34788999999999999999
Q ss_pred ecCc-cceeeeccccCHHHHHHH
Q psy12669 112 RHGS-IEKLEYRRERTVEALVKY 133 (157)
Q Consensus 112 ~~g~-~~~~~~~g~~~~~~l~~~ 133 (157)
..+. ...---.|..+.++|.+=
T Consensus 191 ~~~~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 191 NPNTKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred ECCCCeEEEEeeecCCHHHHHHh
Confidence 7544 332146788998888753
No 128
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.83 E-value=6.3e-08 Score=62.15 Aligned_cols=70 Identities=21% Similarity=0.451 Sum_probs=56.8
Q ss_pred cCCeEEEEEecC-CChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC---------------------hhhHhhC
Q psy12669 43 NYDFVLILFYVK-WCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY---------------------ESVCEDY 100 (157)
Q Consensus 43 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~ 100 (157)
.+++++|.||+. ||+.|+...+.+.++.+++++ .++.++.|..+.. .++++.|
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-----~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 98 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-----KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAF 98 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-----TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHT
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-----ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHc
Confidence 678999999999 999999999999999999863 4688888887653 2556678
Q ss_pred CCC------CCCeEEEEecCccc
Q psy12669 101 NIV------KYPTVKIMRHGSIE 117 (157)
Q Consensus 101 ~i~------~~P~~~~~~~g~~~ 117 (157)
++. .+|+++++.++..+
T Consensus 99 ~~~~~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 99 GIEDEKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TCEETTTSEESEEEEEEETTSBE
T ss_pred CCccccCCceEeEEEEECCCCEE
Confidence 887 78888888755544
No 129
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.81 E-value=8.4e-08 Score=63.48 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=36.9
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE 94 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 94 (157)
+++.+++.|++.||++|+...+.+.++.+++++ .++.++.|..+...
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-----~~v~vv~V~~~~~~ 69 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDA-----LGVELVAVGPESPE 69 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-----cCeEEEEEeCCCHH
Confidence 344556656799999999999999999999863 45888888877553
No 130
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.78 E-value=8.4e-08 Score=56.64 Aligned_cols=73 Identities=19% Similarity=0.420 Sum_probs=55.3
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeecc-ccCH
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRR-ERTV 127 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g-~~~~ 127 (157)
|.+++++|++|......+.++...+ ++.+-.+|..+.+++ .+|++.++|++++ ||+ + ++.| ..+.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~--------~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~-~--~~~G~~p~~ 68 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL--------GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK-V--VFVGRVPSK 68 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT--------TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE-E--EEESS--HH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc--------CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE-E--EEEecCCCH
Confidence 3447888999999999999998885 366777777666666 9999999999944 554 2 4888 6888
Q ss_pred HHHHHHHH
Q psy12669 128 EALVKYVR 135 (157)
Q Consensus 128 ~~l~~~l~ 135 (157)
+.+.+|++
T Consensus 69 ~el~~~l~ 76 (76)
T PF13192_consen 69 EELKELLE 76 (76)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99998874
No 131
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.77 E-value=2.2e-07 Score=59.30 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=68.5
Q ss_pred hhccCCeEEEEEecC----CChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC--hhhHhhCCCCCCCeEEEEe-
Q psy12669 40 VRDNYDFVLILFYVK----WCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY--ESVCEDYNIVKYPTVKIMR- 112 (157)
Q Consensus 40 ~~~~~~~~lv~f~~~----~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~P~~~~~~- 112 (157)
..++.|.++|++|++ ||..|+..... +++.+.+ ..++.+...|++.. .+++..++++++|++.++.
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~l------n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYI------NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIML 85 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHH------HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEe
Confidence 346788999999999 88888655421 3333344 23588888888754 5788899999999999982
Q ss_pred -cCc--cceeeeccccCHHHHHHHHHHHcC
Q psy12669 113 -HGS--IEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 113 -~g~--~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+++ .+. +..|..+++++...++....
T Consensus 86 ~~~~~~vv~-~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 86 KDNRMTIVG-RLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred cCCceEEEE-EEeCCCCHHHHHHHHHHHHh
Confidence 232 345 89999999999999987654
No 132
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.77 E-value=7.1e-08 Score=64.61 Aligned_cols=89 Identities=16% Similarity=0.269 Sum_probs=59.6
Q ss_pred cCCCCceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHH-H--HHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh
Q psy12669 23 SVNNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPT-F--DEVLVTLINLLPEPRKFAITKINCDDYESVCED 99 (157)
Q Consensus 23 ~~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~ 99 (157)
+.++-.....+++.++.+.+++++++|.++.+||..|+.|..+ | .+++..++ .++.-++||.++.+++.+.
T Consensus 16 a~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN------~~FI~VkvDree~Pdid~~ 89 (163)
T PF03190_consen 16 AHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN------RNFIPVKVDREERPDIDKI 89 (163)
T ss_dssp TTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH------HH-EEEEEETTT-HHHHHH
T ss_pred ccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh------CCEEEEEeccccCccHHHH
Confidence 3334455666778899998999999999999999999999863 3 45677764 3577889999999999888
Q ss_pred C--------CCCCCCeEEEEe-cCccc
Q psy12669 100 Y--------NIVKYPTVKIMR-HGSIE 117 (157)
Q Consensus 100 ~--------~i~~~P~~~~~~-~g~~~ 117 (157)
| +..++|+.++.. +|+++
T Consensus 90 y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 90 YMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp HHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred HHHHHHHhcCCCCCCceEEECCCCCee
Confidence 7 788999988885 66665
No 133
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.72 E-value=1.8e-07 Score=59.62 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=53.0
Q ss_pred ccCCeEEEEEec-------CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-------hhhHh--hCCCCCC
Q psy12669 42 DNYDFVLILFYV-------KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-------ESVCE--DYNIVKY 105 (157)
Q Consensus 42 ~~~~~~lv~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------~~~~~--~~~i~~~ 105 (157)
+++++++|.|++ +|||.|.+.+|.+++..... ..+..++.+.+... ..+.+ +++++++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~------~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~I 90 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA------PENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGI 90 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-------STTEEEEEEE---HHHHC-TTSHHHH--CC---SS
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC------CCCceEEEEEcCCHHHhCCCCCCceEcceeeeeec
Confidence 355789999986 59999999999999987775 45688887776432 23333 5999999
Q ss_pred CeEEEEecCccceeeeccc--cCHHHHHHHHH
Q psy12669 106 PTVKIMRHGSIEKLEYRRE--RTVEALVKYVR 135 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~--~~~~~l~~~l~ 135 (157)
||++-+..++. ..+. .+.+-+..+++
T Consensus 91 PTLi~~~~~~r----L~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 91 PTLIRWETGER----LVEEECLNEDLVEMFFE 118 (119)
T ss_dssp SEEEECTSS-E----EEHHHHH-HHHHHHHHH
T ss_pred ceEEEECCCCc----cchhhhccHHHHHHHhc
Confidence 99999987633 3332 44455554443
No 134
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.69 E-value=4.2e-07 Score=56.47 Aligned_cols=92 Identities=20% Similarity=0.369 Sum_probs=67.7
Q ss_pred CcccHHHhhcc--CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh----hhHhhCCCC-CC
Q psy12669 33 DTDNVDYVRDN--YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE----SVCEDYNIV-KY 105 (157)
Q Consensus 33 ~~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~i~-~~ 105 (157)
+.++++++++. +++++++=++..|+-+......|++..... ..++.++.+|.-+++ .++++|||. .-
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~------~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEES------PDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHH------T----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcC------CccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 45788888755 888888889999999999999999998886 345999999998875 556789997 68
Q ss_pred CeEEEEecCccceeeeccccCHHHH
Q psy12669 106 PTVKIMRHGSIEKLEYRRERTVEAL 130 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~~~~~~l 130 (157)
|.++++++|+.++..-.+..+.+.|
T Consensus 80 PQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CcEEEEECCEEEEECccccCCHHhc
Confidence 9999999999998666666777665
No 135
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.68 E-value=3.5e-07 Score=62.42 Aligned_cols=89 Identities=15% Similarity=0.321 Sum_probs=63.5
Q ss_pred cCCeEEEEEe-cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC----------------------------C
Q psy12669 43 NYDFVLILFY-VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD----------------------------Y 93 (157)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~ 93 (157)
.+++++|.|| +.||++|....+.+.++++++++. ++.++.|..+. .
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-----~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 102 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-----NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPK 102 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-----CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCc
Confidence 4689999999 899999999999999999998643 35555555432 2
Q ss_pred hhhHhhCCCC------CCCeEEEEe-cCccceeeeccc----cCHHHHHHHHHHH
Q psy12669 94 ESVCEDYNIV------KYPTVKIMR-HGSIEKLEYRRE----RTVEALVKYVREE 137 (157)
Q Consensus 94 ~~~~~~~~i~------~~P~~~~~~-~g~~~~~~~~g~----~~~~~l~~~l~~~ 137 (157)
.++++.|++. ..|+++++. +|+... .+.+. .+.+++.+.|...
T Consensus 103 ~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~-~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 103 KKISRDYGVLDEEEGVALRGTFIIDPEGIIRH-ITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hhHHHHhCCccccCCceeeEEEEECCCCeEEE-EEecCCCCCCCHHHHHHHHHHh
Confidence 2445667875 468999997 665554 55332 4567788888665
No 136
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.68 E-value=5.9e-07 Score=56.92 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=81.6
Q ss_pred eeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCC--CC
Q psy12669 29 VIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK--YP 106 (157)
Q Consensus 29 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~--~P 106 (157)
|.+++.++.+.+...+.+..+.|+.+. .-....+.+.++++.+.+. ++++.|+.+|.++.....+.||++. +|
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~---kgki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKD--DLESLKEFKQAVARQLISE---KGAINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhc---CceEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 457889999998877777666666332 4467788889999982222 6889999999999877899999986 89
Q ss_pred eEEEEecCccceee-eccccCHHHHHHHHHHHcC
Q psy12669 107 TVKIMRHGSIEKLE-YRRERTVEALVKYVREELM 139 (157)
Q Consensus 107 ~~~~~~~g~~~~~~-~~g~~~~~~l~~~l~~~~~ 139 (157)
.+.+........+. +.+..+++.|.+|+++.+.
T Consensus 76 ~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99888753322213 5678999999999999865
No 137
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.66 E-value=1.4e-07 Score=58.88 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=71.3
Q ss_pred CCceeecCcccHHHhhccCCeEEEEEecCCChHH---HhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCC
Q psy12669 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFS---VAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNI 102 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C---~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i 102 (157)
..+...++.+++++.+..+...+++| +..|..+ ....=.+.++.+.+ .+.+..+.++-....++..+|++
T Consensus 8 ~~g~~~vd~~~ld~~l~~~~~~vlf~-~gDp~r~~E~~DvaVILPEL~~af------~~~~~~avv~~~~e~~L~~r~gv 80 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLAAPGDAVLFF-AGDPARFPETADVAVILPELVKAF------PGRFRGAVVARAAERALAARFGV 80 (107)
T ss_dssp T-TEEEE-CCCHHHHHHCCSCEEEEE-SS-TTTSTTCCHHHHHHHHHHCTS------TTSEEEEEEEHHHHHHHHHHHT-
T ss_pred hcCCeeechhhHHHHHhCCCcEEEEE-CCCCCcCcccccceeEcHHHHHhh------hCccceEEECchhHHHHHHHhCC
Confidence 45788999999999998877766555 4444443 33334667777666 67788888887778899999999
Q ss_pred CCCCeEEEEecCccceeeeccccCHHH
Q psy12669 103 VKYPTVKIMRHGSIEKLEYRRERTVEA 129 (157)
Q Consensus 103 ~~~P~~~~~~~g~~~~~~~~g~~~~~~ 129 (157)
..+|++++|++|+.+. ...|.++-.+
T Consensus 81 ~~~PaLvf~R~g~~lG-~i~gi~dW~d 106 (107)
T PF07449_consen 81 RRWPALVFFRDGRYLG-AIEGIRDWAD 106 (107)
T ss_dssp TSSSEEEEEETTEEEE-EEESSSTHHH
T ss_pred ccCCeEEEEECCEEEE-EecCeecccc
Confidence 9999999999999998 7888776543
No 138
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.65 E-value=4.8e-07 Score=65.14 Aligned_cols=88 Identities=13% Similarity=0.192 Sum_probs=69.7
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-----------hhhHhhCCCCCCCeEEEE
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-----------ESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~~~~~~~i~~~P~~~~~ 111 (157)
.++..++.||...|++|+++.|.+..+++.+ ++.+..|+.|.. ...++++++..+|++++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y--------gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv 220 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY--------GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLV 220 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh--------CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEE
Confidence 4568999999999999999999999999998 355666655543 457889999999999999
Q ss_pred ecC--ccceeeeccccCHHHHHHHHHHHcC
Q psy12669 112 RHG--SIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 112 ~~g--~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
..+ +..+ --.|..+.++|.+-+.....
T Consensus 221 ~~~t~~~~p-v~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 221 NPKSQKMSP-LAYGFISQDELKERILNVLT 249 (256)
T ss_pred ECCCCcEEE-EeeccCCHHHHHHHHHHHHh
Confidence 744 3333 45789999999887776654
No 139
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.64 E-value=5.3e-07 Score=62.35 Aligned_cols=88 Identities=11% Similarity=0.253 Sum_probs=62.8
Q ss_pred cCCeEEEEEe-cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-------------------------Chhh
Q psy12669 43 NYDFVLILFY-VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-------------------------YESV 96 (157)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~~ 96 (157)
.+++++|.|| +.||+.|....+.+.++.+++++. ++.++.|..+. ...+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-----gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~ 104 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-----GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVL 104 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-----CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHH
Confidence 4678999999 999999999999999999888643 34455554432 2356
Q ss_pred HhhCCCC------CCCeEEEEe-cCccceeeecc----ccCHHHHHHHHHH
Q psy12669 97 CEDYNIV------KYPTVKIMR-HGSIEKLEYRR----ERTVEALVKYVRE 136 (157)
Q Consensus 97 ~~~~~i~------~~P~~~~~~-~g~~~~~~~~g----~~~~~~l~~~l~~ 136 (157)
++.|++. ..|+.+++. +|.... .+.+ ..+.+++.+.|..
T Consensus 105 a~~~gv~~~~~g~~~p~tfiID~~G~I~~-~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 105 TRNFGVLIEEAGLADRGTFVIDPEGVIQA-VEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred HHHhCCcccCCCceeeEEEEECCCCEEEE-EEEeCCCCCCCHHHHHHHHHH
Confidence 6778876 359998886 666654 3322 2477888777744
No 140
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.61 E-value=9.2e-07 Score=59.09 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=59.0
Q ss_pred cCCeEEEEEecC-CChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC---------------------hhhHhhC
Q psy12669 43 NYDFVLILFYVK-WCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY---------------------ESVCEDY 100 (157)
Q Consensus 43 ~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~ 100 (157)
++++++|.||+. ||+.|....+.+.++.+.+++ .++.++.|..+.. ..+.+.|
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-----~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 103 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-----AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQF 103 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-----CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHh
Confidence 567899999976 688899999999999888863 3466777766532 2455677
Q ss_pred CCCCC------------CeEEEEe-cCccceeeeccccCHHHHH
Q psy12669 101 NIVKY------------PTVKIMR-HGSIEKLEYRRERTVEALV 131 (157)
Q Consensus 101 ~i~~~------------P~~~~~~-~g~~~~~~~~g~~~~~~l~ 131 (157)
++... |+.+++. +|+.+. .+.|....+.+.
T Consensus 104 gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~-~~~g~~~~~~~~ 146 (154)
T PRK09437 104 GVWGEKKFMGKTYDGIHRISFLIDADGKIEH-VFDKFKTSNHHD 146 (154)
T ss_pred CCCcccccccccccCcceEEEEECCCCEEEE-EEcCCCcchhHH
Confidence 77543 6677775 776666 788865555433
No 141
>KOG3425|consensus
Probab=98.59 E-value=3.8e-07 Score=57.24 Aligned_cols=73 Identities=21% Similarity=0.378 Sum_probs=56.8
Q ss_pred ccHHHhh---ccCCeEEEEEec--------CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-------hhh
Q psy12669 35 DNVDYVR---DNYDFVLILFYV--------KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-------ESV 96 (157)
Q Consensus 35 ~~~~~~~---~~~~~~lv~f~~--------~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------~~~ 96 (157)
+.|++.+ .+++.++|+|++ +|||.|.+.+|.+.+.-+.. ..++.|+.|++.+. ..+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a------p~~~~~v~v~VG~rp~Wk~p~n~F 86 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA------PEDVHFVHVYVGNRPYWKDPANPF 86 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC------CCceEEEEEEecCCCcccCCCCcc
Confidence 4455543 355569999987 68999999999999988855 57899999998754 355
Q ss_pred HhhCCC-CCCCeEEEEec
Q psy12669 97 CEDYNI-VKYPTVKIMRH 113 (157)
Q Consensus 97 ~~~~~i-~~~P~~~~~~~ 113 (157)
.+..++ .++||++-+++
T Consensus 87 R~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 87 RKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ccCCCceeecceeeEEcC
Confidence 566676 89999999985
No 142
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.59 E-value=1.6e-07 Score=56.15 Aligned_cols=60 Identities=8% Similarity=0.218 Sum_probs=44.7
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-----hhHhhCCCCCCCeEEEEecCccc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-----SVCEDYNIVKYPTVKIMRHGSIE 117 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~i~~~P~~~~~~~g~~~ 117 (157)
++.|+++||++|+++.+.+.++. + ...+.+..+|.+.+. .+.+.+++.++|++ |-+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i------~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--V------KPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--C------CCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 46799999999999999998876 2 234778888876543 25566799999997 4456443
No 143
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.58 E-value=9.1e-07 Score=60.07 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=50.9
Q ss_pred cCCeEEEEEecCC-ChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-----------------------hhhHh
Q psy12669 43 NYDFVLILFYVKW-CRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-----------------------ESVCE 98 (157)
Q Consensus 43 ~~~~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~ 98 (157)
.+++++|.||+.| |++|....+.+.++++++ .++.++.|..+.. ..+++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-------~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~ 115 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-------DNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGK 115 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-------CCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHH
Confidence 5779999999999 999999999999988876 2455666655421 25567
Q ss_pred hCCCCCCC---------eEEEEe-cCccce
Q psy12669 99 DYNIVKYP---------TVKIMR-HGSIEK 118 (157)
Q Consensus 99 ~~~i~~~P---------~~~~~~-~g~~~~ 118 (157)
.|++...| +.+++. +|+.+.
T Consensus 116 ~~gv~~~~~~~~g~~~r~tfvId~~G~I~~ 145 (167)
T PRK00522 116 AYGVAIAEGPLKGLLARAVFVLDENNKVVY 145 (167)
T ss_pred HhCCeecccccCCceeeEEEEECCCCeEEE
Confidence 77877666 777775 665554
No 144
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.57 E-value=6.4e-07 Score=61.63 Aligned_cols=43 Identities=12% Similarity=0.323 Sum_probs=36.7
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD 91 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~ 91 (157)
.+++++|.|||+||+.|+ ..+.++++.+++++ .++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~-----~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD-----QGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh-----CCeEEEEeecc
Confidence 578999999999999997 48899999999863 35889999885
No 145
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.55 E-value=1.2e-06 Score=62.85 Aligned_cols=90 Identities=10% Similarity=0.061 Sum_probs=67.7
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC---------hhhHhhCCCCCCCeEEEEec
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY---------ESVCEDYNIVKYPTVKIMRH 113 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------~~~~~~~~i~~~P~~~~~~~ 113 (157)
.++.-|++||...|++|+++.|.+..+++.+ +-.|..+.+|..-. ...+++++|..+|++++...
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y------g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~ 215 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY------GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDP 215 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh------CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEEC
Confidence 3568899999999999999999999999998 23344444443222 34567899999999999974
Q ss_pred C--ccceeeeccccCHHHHHHHHHHHcC
Q psy12669 114 G--SIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 114 g--~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+ +..+ --.|..+.++|.+-+....+
T Consensus 216 ~t~~~~p-v~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 216 KSGSVRP-LSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred CCCcEEE-EeeccCCHHHHHHHHHHHHh
Confidence 3 3444 46789999999887776644
No 146
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.53 E-value=1.2e-06 Score=52.77 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=56.0
Q ss_pred EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh----hhHhhCC--CCCCCeEEEEecCccceee
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE----SVCEDYN--IVKYPTVKIMRHGSIEKLE 120 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~--i~~~P~~~~~~~g~~~~~~ 120 (157)
-++.|+.+||++|++..+.++++..++ .++.+..+|.+.+. ++.+..+ +..+|+++ -+|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig-- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-------DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG-- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-------cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc--
Confidence 367899999999999999999998763 35888888888652 4544444 57899975 4664432
Q ss_pred eccccCHHHHHHHHHHHcC
Q psy12669 121 YRRERTVEALVKYVREELM 139 (157)
Q Consensus 121 ~~g~~~~~~l~~~l~~~~~ 139 (157)
..+++.+++++.++
T Consensus 71 -----g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 -----GCTDFEAYVKENLG 84 (85)
T ss_pred -----CHHHHHHHHHHhcc
Confidence 34677777776653
No 147
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.53 E-value=9.1e-07 Score=63.18 Aligned_cols=82 Identities=9% Similarity=0.187 Sum_probs=58.7
Q ss_pred CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEE------------------------------------
Q psy12669 44 YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITK------------------------------------ 87 (157)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------------------------------ 87 (157)
++.+++.|.-+.||+|+++.+++.++.+. .-.+.+..
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL-------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC-------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 45689999999999999999988776431 01111111
Q ss_pred ------EeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHHHH
Q psy12669 88 ------INCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 88 ------vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
.+++++.+++++++|+++|+++ +.+|+. ..|..+++.|.+++.+.
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~----~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIV-LSNGTL----VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEE-EcCCeE----eeCCCCHHHHHHHHHHc
Confidence 1112234777889999999997 777754 46889999999999764
No 148
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.53 E-value=1.8e-06 Score=53.04 Aligned_cols=89 Identities=20% Similarity=0.337 Sum_probs=67.8
Q ss_pred ccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecC
Q psy12669 35 DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114 (157)
Q Consensus 35 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 114 (157)
+.+++.++.+++++|-|+.+++. .....+.++|..+ ...+.|+.+. +.++++++++.. |++++|++.
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~------r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~ 74 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESL------RDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF 74 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhc------ccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence 44666778889999999999876 4778888888887 4568887766 456777777654 889999764
Q ss_pred ccceeeeccccCHHHHHHHHHH
Q psy12669 115 SIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 115 ~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
..-...|.|..+.+.|.+|+..
T Consensus 75 ~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccCCccCCCCCCHHHHHHHHHh
Confidence 3332269999889999999875
No 149
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.50 E-value=1.3e-06 Score=57.27 Aligned_cols=77 Identities=13% Similarity=0.227 Sum_probs=54.3
Q ss_pred cCCeEEEEEe-cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC----------------------hhhHhh
Q psy12669 43 NYDFVLILFY-VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY----------------------ESVCED 99 (157)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~ 99 (157)
.+++++|.|| +.||+.|....+.+.++.+++++ +++.++.|..+.. ..+.+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-----~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 95 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-----GGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKA 95 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-----CCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHH
Confidence 6888999999 78999999999999999988852 3466666665432 244456
Q ss_pred CCCCCCC---------eEEEEe-cCccceeeecccc
Q psy12669 100 YNIVKYP---------TVKIMR-HGSIEKLEYRRER 125 (157)
Q Consensus 100 ~~i~~~P---------~~~~~~-~g~~~~~~~~g~~ 125 (157)
|++...| ++++.. +|+.+. ++.|..
T Consensus 96 ~g~~~~~~~~~~~~~p~~~lid~~g~i~~-~~~~~~ 130 (140)
T cd02971 96 YGVLIEKSAGGGLAARATFIIDPDGKIRY-VEVEPL 130 (140)
T ss_pred cCCccccccccCceeEEEEEECCCCcEEE-EEecCC
Confidence 6666555 666775 455555 666653
No 150
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.48 E-value=8.5e-07 Score=57.64 Aligned_cols=80 Identities=13% Similarity=0.314 Sum_probs=49.7
Q ss_pred cCcccHHHhhc-cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhC---CCCCCCe
Q psy12669 32 LDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDY---NIVKYPT 107 (157)
Q Consensus 32 l~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~---~i~~~P~ 107 (157)
++++..+.+.. ..+..++.|..+|||.|+...|.+.++++.. .++.+-.+.-+++.++.++| +.+.+|+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-------p~i~~~~i~rd~~~el~~~~lt~g~~~IP~ 100 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN-------PNIEVRIILRDENKELMDQYLTNGGRSIPT 100 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH--------TTEEEEEE-HHHHHHHTTTTTT-SS--SSE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-------CCCeEEEEEecCChhHHHHHHhCCCeecCE
Confidence 34444443332 3445777799999999999999999999884 46777777777777766554 6788999
Q ss_pred EEEEe-cCccce
Q psy12669 108 VKIMR-HGSIEK 118 (157)
Q Consensus 108 ~~~~~-~g~~~~ 118 (157)
++++. +|+.+.
T Consensus 101 ~I~~d~~~~~lg 112 (129)
T PF14595_consen 101 FIFLDKDGKELG 112 (129)
T ss_dssp EEEE-TT--EEE
T ss_pred EEEEcCCCCEeE
Confidence 99996 566666
No 151
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.47 E-value=3.7e-06 Score=55.69 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=52.4
Q ss_pred cCCeEEEEEe-cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-----------------------hhhHh
Q psy12669 43 NYDFVLILFY-VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-----------------------ESVCE 98 (157)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~ 98 (157)
++++++|.|| +.||+.|....|.+.++.+++++ .++.++.|..+.. ..+.+
T Consensus 27 g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-----~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 101 (149)
T cd03018 27 GRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA-----AGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAK 101 (149)
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-----CCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHH
Confidence 3377788777 99999999999999999998863 3466666665431 34556
Q ss_pred hCCCCC----C--CeEEEEe-cCccceeeeccc
Q psy12669 99 DYNIVK----Y--PTVKIMR-HGSIEKLEYRRE 124 (157)
Q Consensus 99 ~~~i~~----~--P~~~~~~-~g~~~~~~~~g~ 124 (157)
.|++.. . |+++++. +|+... .+.|.
T Consensus 102 ~~g~~~~~~~~~~~~~~lid~~G~v~~-~~~~~ 133 (149)
T cd03018 102 AYGVFDEDLGVAERAVFVIDRDGIIRY-AWVSD 133 (149)
T ss_pred HhCCccccCCCccceEEEECCCCEEEE-EEecC
Confidence 677662 2 3777775 666555 56554
No 152
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.47 E-value=1.5e-06 Score=57.03 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=38.7
Q ss_pred cCCeEEEEEecCCChH-HHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q psy12669 43 NYDFVLILFYVKWCRF-SVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD 92 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~ 92 (157)
.+++++|.||++||++ |.+..+.+.++...+++.. .+++.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~--~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADG--GDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhh--cCceEEEEEEECC
Confidence 5789999999999998 9999999999999885431 0258888887653
No 153
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.45 E-value=2.6e-06 Score=56.17 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=52.5
Q ss_pred cCCeEEEEEecCC-ChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-----------------------hhhHh
Q psy12669 43 NYDFVLILFYVKW-CRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-----------------------ESVCE 98 (157)
Q Consensus 43 ~~~~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~ 98 (157)
.++++++.||+.| |++|+...+.+.++.+++ . ++.++.|+.+.. ..+++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~------~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 97 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL------D-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGK 97 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc------C-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHH
Confidence 4678999999999 699999999999998886 2 467777776531 24455
Q ss_pred hCCCCC------CCeEEEEe-cCccceeeecc
Q psy12669 99 DYNIVK------YPTVKIMR-HGSIEKLEYRR 123 (157)
Q Consensus 99 ~~~i~~------~P~~~~~~-~g~~~~~~~~g 123 (157)
.|++.. .|+.+++. +|+... .+.|
T Consensus 98 ~~gv~~~~~~~~~~~~~iid~~G~I~~-~~~~ 128 (143)
T cd03014 98 AYGVLIKDLGLLARAVFVIDENGKVIY-VELV 128 (143)
T ss_pred HhCCeeccCCccceEEEEEcCCCeEEE-EEEC
Confidence 666643 57888886 566554 4543
No 154
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.41 E-value=4.3e-06 Score=58.51 Aligned_cols=90 Identities=11% Similarity=0.212 Sum_probs=62.8
Q ss_pred cCCeEE-EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC---------------------------CCh
Q psy12669 43 NYDFVL-ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD---------------------------DYE 94 (157)
Q Consensus 43 ~~~~~l-v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~---------------------------~~~ 94 (157)
.++.++ +.||+.||+.|....+.+.+..+++++. ++.++.|.++ .+.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-----~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~ 100 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-----GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDK 100 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCCh
Confidence 455554 4689999999999999999999888643 3445555443 224
Q ss_pred hhHhhCCCC------CCCeEEEEe-cCccceeee----ccccCHHHHHHHHHHHc
Q psy12669 95 SVCEDYNIV------KYPTVKIMR-HGSIEKLEY----RRERTVEALVKYVREEL 138 (157)
Q Consensus 95 ~~~~~~~i~------~~P~~~~~~-~g~~~~~~~----~g~~~~~~l~~~l~~~~ 138 (157)
++++.|++. .+|+++++. +|+... .. .+.++.+++...+....
T Consensus 101 ~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~-~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 101 ELAREYNLIDENSGATVRGVFIIDPNQIVRW-MIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HHHHHcCCccccCCcEEeEEEEECCCCEEEE-EEEeCCCCCCCHHHHHHHHHHhh
Confidence 666778874 489999997 554433 22 34478888888887654
No 155
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.40 E-value=6.6e-06 Score=52.09 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=71.8
Q ss_pred eecCcccHHHhhccCCeEEEEE---ecCCChHHHhhhHHHHHHHHHHHhcCCCC-CceEEEEEeCCCChhhHhhCCCCC-
Q psy12669 30 IELDTDNVDYVRDNYDFVLILF---YVKWCRFSVAMLPTFDEVLVTLINLLPEP-RKFAITKINCDDYESVCEDYNIVK- 104 (157)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~lv~f---~~~~C~~C~~~~~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~- 104 (157)
.+++.+|..... ..+..++++ |+..-..-..+...+.++|+.+ + +++.|+.+|.++.....+.||+..
T Consensus 2 ~~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~f------k~gki~Fv~~D~~~~~~~l~~fgl~~~ 74 (111)
T cd03073 2 GHRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDF------PDRKLNFAVADKEDFSHELEEFGLDFS 74 (111)
T ss_pred CeeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHC------cCCeEEEEEEcHHHHHHHHHHcCCCcc
Confidence 356777777774 333344443 2233344567788889999998 6 589999999998877889999984
Q ss_pred ---CCeEEEEecCccceeeecccc-CHHHHHHHHHHH
Q psy12669 105 ---YPTVKIMRHGSIEKLEYRRER-TVEALVKYVREE 137 (157)
Q Consensus 105 ---~P~~~~~~~g~~~~~~~~g~~-~~~~l~~~l~~~ 137 (157)
.|++.+...+. ......+.. +.+.|.+|+++.
T Consensus 75 ~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 75 GGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred cCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 99999987433 221346677 999999999875
No 156
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.39 E-value=8.4e-06 Score=56.34 Aligned_cols=89 Identities=11% Similarity=0.216 Sum_probs=64.0
Q ss_pred cCCeEEEEEe-cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC-------------------------CChhh
Q psy12669 43 NYDFVLILFY-VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD-------------------------DYESV 96 (157)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------------------------~~~~~ 96 (157)
.++++++.|| +.||+.|....+.+.+...++++. ++.++.|..+ .+.++
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-----g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~i 104 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-----GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGAL 104 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-----CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHH
Confidence 4678899999 999999999999999999888643 3444444433 23467
Q ss_pred HhhCCCC----CC--CeEEEEe-cCccceeeec----cccCHHHHHHHHHHH
Q psy12669 97 CEDYNIV----KY--PTVKIMR-HGSIEKLEYR----RERTVEALVKYVREE 137 (157)
Q Consensus 97 ~~~~~i~----~~--P~~~~~~-~g~~~~~~~~----g~~~~~~l~~~l~~~ 137 (157)
++.|++. +. |+.++.. +|+... .+. ...+.+++...+...
T Consensus 105 a~~ygv~~~~~g~~~r~tfIID~~G~I~~-~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 105 TRNFDNMREDEGLADRATFVVDPQGIIQA-IEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred HHHcCCCcccCCceeeEEEEECCCCEEEE-EEEeCCCCCCCHHHHHHHHHhh
Confidence 7889983 55 9999996 665544 332 236788888888554
No 157
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.38 E-value=3.3e-06 Score=67.58 Aligned_cols=95 Identities=11% Similarity=0.225 Sum_probs=75.6
Q ss_pred ceeecCcccHHHhhccCCeE-EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 28 QVIELDTDNVDYVRDNYDFV-LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~-lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
+-..++++..+.+.+=++++ +-.|.+++|++|......+.+++... .++..-.+|....++++++|+|.++|
T Consensus 459 ~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-------~~i~~~~i~~~~~~~~~~~~~v~~vP 531 (555)
T TIGR03143 459 PGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-------PNVEAEMIDVSHFPDLKDEYGIMSVP 531 (555)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-------CCceEEEEECcccHHHHHhCCceecC
Confidence 34456777777665445554 44568999999999999999998873 47999999999999999999999999
Q ss_pred eEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 107 TVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 107 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
++++ +|+. .+.|..+.+++.+|+
T Consensus 532 ~~~i--~~~~---~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 532 AIVV--DDQQ---VYFGKKTIEEMLELI 554 (555)
T ss_pred EEEE--CCEE---EEeeCCCHHHHHHhh
Confidence 9866 4543 366888999998886
No 158
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=98.37 E-value=5.5e-06 Score=50.59 Aligned_cols=95 Identities=21% Similarity=0.418 Sum_probs=74.5
Q ss_pred cccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC--ChhhHhhCCCC----CCCe
Q psy12669 34 TDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD--YESVCEDYNIV----KYPT 107 (157)
Q Consensus 34 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~----~~P~ 107 (157)
..+|..++.....++|.|..+- ..-......+.+++..+ .+.=++..|||.+ ...+|+++.+. .-|.
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~v------kG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAV------KGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHh------cCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 4788888888888899887764 23333445677777777 5778899999987 67999999988 4553
Q ss_pred -EEEEecCccceeeeccccCHHHHHHHHHH
Q psy12669 108 -VKIMRHGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 108 -~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
+..|++|.... .|+...+..+++.|+.+
T Consensus 82 ~LkHYKdG~fHk-dYdR~~t~kSmv~FlrD 110 (112)
T cd03067 82 ELKHYKDGDFHT-EYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhhcccCCCccc-cccchhhHHHHHHHhhC
Confidence 67788999988 89999999999999864
No 159
>KOG0911|consensus
Probab=98.37 E-value=3e-07 Score=63.94 Aligned_cols=83 Identities=11% Similarity=0.219 Sum_probs=72.7
Q ss_pred ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeee
Q psy12669 42 DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEY 121 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~ 121 (157)
.+.+..+++||++||..|+++...++.+++.. .++.+.+.+.++.++++..+.+...|..+++..|+.+. +.
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-------~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~-~l 86 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-------KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD-RL 86 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-------hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh-hh
Confidence 46778999999999999999999999999886 46899999999999999999999999999999999888 78
Q ss_pred ccccCHHHHHH
Q psy12669 122 RRERTVEALVK 132 (157)
Q Consensus 122 ~g~~~~~~l~~ 132 (157)
.|.........
T Consensus 87 ~~~~~~~~~~~ 97 (227)
T KOG0911|consen 87 SGADPPFLVSK 97 (227)
T ss_pred hccCcHHHHHH
Confidence 87655544333
No 160
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.36 E-value=4.4e-06 Score=66.32 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=78.9
Q ss_pred ceeecCcccHHHhhccC-CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 28 QVIELDTDNVDYVRDNY-DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
+-..|+++..+.+.+=+ +.-+-.|+++.|++|......+++++.. ..++.+-.+|....++++++|++.++|
T Consensus 99 ~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-------~~~i~~~~id~~~~~~~~~~~~v~~VP 171 (517)
T PRK15317 99 HPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-------NPNITHTMIDGALFQDEVEARNIMAVP 171 (517)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-------CCCceEEEEEchhCHhHHHhcCCcccC
Confidence 34455777666654433 4457789999999999999999999876 357999999999999999999999999
Q ss_pred eEEEEecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 107 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
++++ +|+. .+.|....+++.+.+.+..+
T Consensus 172 ~~~i--~~~~---~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 172 TVFL--NGEE---FGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred EEEE--CCcE---EEecCCCHHHHHHHHhcccc
Confidence 9965 5542 36788888888888876544
No 161
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.36 E-value=3.7e-05 Score=50.06 Aligned_cols=109 Identities=16% Similarity=0.256 Sum_probs=78.7
Q ss_pred ceeecCcccH-HHhhccCCeEEEEEecC--CChH-H-HhhhHHHHHHHHHHHhcCCCCCc-eEEEEEeCCCChhhHhhCC
Q psy12669 28 QVIELDTDNV-DYVRDNYDFVLILFYVK--WCRF-S-VAMLPTFDEVLVTLINLLPEPRK-FAITKINCDDYESVCEDYN 101 (157)
Q Consensus 28 ~v~~l~~~~~-~~~~~~~~~~lv~f~~~--~C~~-C-~~~~~~~~~~~~~~~~~~~~~~~-v~~~~vd~~~~~~~~~~~~ 101 (157)
.+.+|+..+. ++.=.+++.-+|-|.-. .|.. + ......+.++++.+ +++ +.|+.+|.++...+.+.||
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~------kgk~i~Fv~vd~~~~~~~~~~fg 76 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKF------KKKPWGWLWTEAGAQLDLEEALN 76 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHh------cCCcEEEEEEeCcccHHHHHHcC
Confidence 5677776655 44444455555555332 1222 2 45667888889888 567 9999999999988999999
Q ss_pred CC--CCCeEEEEecCccceeeeccccCHHHHHHHHHHHcCCCc
Q psy12669 102 IV--KYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPT 142 (157)
Q Consensus 102 i~--~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 142 (157)
+. ++|++++++..+.....+.|..+.+.+.+|+++.+....
T Consensus 77 l~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 77 IGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 95 599999997544332127799999999999999988654
No 162
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.32 E-value=4.6e-06 Score=48.09 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=44.9
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh----CCCCCCCeEEEEecCccceeeecc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED----YNIVKYPTVKIMRHGSIEKLEYRR 123 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~----~~i~~~P~~~~~~~g~~~~~~~~g 123 (157)
++.|+++||++|+++...+.+. ++.+..+|.+.+.+..+. .+...+|++++ +|+ ...|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~----~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE----HLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE----EEec
Confidence 5779999999999987766541 356667777766544433 36889999865 332 2344
Q ss_pred ccCHHHHHHH
Q psy12669 124 ERTVEALVKY 133 (157)
Q Consensus 124 ~~~~~~l~~~ 133 (157)
.+.+.|.++
T Consensus 64 -~~~~~l~~~ 72 (73)
T cd02976 64 -FRPDKLRAL 72 (73)
T ss_pred -CCHHHHHhh
Confidence 456666665
No 163
>PRK15000 peroxidase; Provisional
Probab=98.31 E-value=1.1e-05 Score=56.43 Aligned_cols=89 Identities=12% Similarity=0.250 Sum_probs=64.2
Q ss_pred cCCeEEEEEec-CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC----------------------------C
Q psy12669 43 NYDFVLILFYV-KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD----------------------------Y 93 (157)
Q Consensus 43 ~~~~~lv~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~ 93 (157)
+++.+++.||+ .||+.|....+.+.+..+++++. ++.++.+..+. .
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-----g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~ 107 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-----GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK 107 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCC
Confidence 56799999999 49999999999999999999744 35555555542 2
Q ss_pred hhhHhhCCCC------CCCeEEEEe-cCccceeeecc----ccCHHHHHHHHHHH
Q psy12669 94 ESVCEDYNIV------KYPTVKIMR-HGSIEKLEYRR----ERTVEALVKYVREE 137 (157)
Q Consensus 94 ~~~~~~~~i~------~~P~~~~~~-~g~~~~~~~~g----~~~~~~l~~~l~~~ 137 (157)
.++++.|++. ..|+.+++. +|.... .+.| .++.+++...+...
T Consensus 108 ~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~-~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 108 REIQKAYGIEHPDEGVALRGSFLIDANGIVRH-QVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred cHHHHHcCCccCCCCcEEeEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHHh
Confidence 3556678876 689999997 555544 4443 25677887777553
No 164
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.30 E-value=1.4e-05 Score=56.03 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=59.8
Q ss_pred eEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC---------------------------ChhhHh
Q psy12669 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD---------------------------YESVCE 98 (157)
Q Consensus 46 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~~~~ 98 (157)
.+++.||++||+.|....+.+.++.+++++. ++.++.|.++. +.++++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-----gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~ 102 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-----NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAK 102 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-----CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHH
Confidence 4566899999999999999999999999743 46666666553 135567
Q ss_pred hCCCC----C----CCeEEEEe-cCccceeeecc----ccCHHHHHHHHHHH
Q psy12669 99 DYNIV----K----YPTVKIMR-HGSIEKLEYRR----ERTVEALVKYVREE 137 (157)
Q Consensus 99 ~~~i~----~----~P~~~~~~-~g~~~~~~~~g----~~~~~~l~~~l~~~ 137 (157)
.|++. + .|+.+++. +|+... .+.+ .++.+++...+...
T Consensus 103 ~yg~~~~~~~~~~~~r~~fiID~~G~I~~-~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 103 LLGMIDPDAGSTLTVRAVFIIDPDKKIRL-ILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred HcCCccccCCCCceeeEEEEECCCCeEEE-EEecCCCCCCCHHHHHHHHHHH
Confidence 78875 2 34578886 555443 4433 35677888777654
No 165
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.25 E-value=1e-05 Score=48.78 Aligned_cols=75 Identities=11% Similarity=0.163 Sum_probs=51.9
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh----hhHhhCCC--CCCCeEEEEecCccceeee
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE----SVCEDYNI--VKYPTVKIMRHGSIEKLEY 121 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~i--~~~P~~~~~~~g~~~~~~~ 121 (157)
++.|+.+||++|++....++++.... ..+.+..+|.+.+. ++....+- ..+|+++ -+|+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-------~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i---- 68 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-------ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV---- 68 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-------CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe----
Confidence 56799999999999999998876542 34777788887533 45555563 7899884 355333
Q ss_pred ccccCHHHHHHHHHHHc
Q psy12669 122 RRERTVEALVKYVREEL 138 (157)
Q Consensus 122 ~g~~~~~~l~~~l~~~~ 138 (157)
| ..++|.+++.+..
T Consensus 69 -g--G~~dl~~~~~~~~ 82 (86)
T TIGR02183 69 -G--GCTDFEQLVKENF 82 (86)
T ss_pred -c--CHHHHHHHHHhcc
Confidence 2 3467777776643
No 166
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.22 E-value=4.2e-05 Score=53.72 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.9
Q ss_pred CCeEEEEEecCCChHHHhhhHHH---HHHHHHH
Q psy12669 44 YDFVLILFYVKWCRFSVAMLPTF---DEVLVTL 73 (157)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~ 73 (157)
+++.+|+|+.-.||+|..+.+.+ ..+.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~ 69 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKL 69 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhC
Confidence 46779999999999999999866 5666665
No 167
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.22 E-value=4.7e-06 Score=58.03 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=53.8
Q ss_pred CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEE-------------------------------------
Q psy12669 44 YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT------------------------------------- 86 (157)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------------- 86 (157)
.+..++.|+.++|++|+++.+.+...... -++.+.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~--------v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~ 148 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADG--------VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVP 148 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCc--------eEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCC
Confidence 56899999999999999999888751100 111111
Q ss_pred ------EEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 87 ------KINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 87 ------~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
..+.+++.+++++++|+++|+++ |++|+. ..|..+.+.|.+++
T Consensus 149 ~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~----~~G~~~~~~l~~~L 197 (197)
T cd03020 149 PPAASCDNPVAANLALGRQLGVNGTPTIV-LADGRV----VPGAPPAAQLEALL 197 (197)
T ss_pred CCccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE----ecCCCCHHHHHhhC
Confidence 12222334677889999999997 777754 46878888887764
No 168
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.21 E-value=1.2e-05 Score=45.05 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=40.9
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHh----hCCCCCCCeEEEEecCc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCE----DYNIVKYPTVKIMRHGS 115 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~----~~~i~~~P~~~~~~~g~ 115 (157)
++.|+.+||++|++....|+ . .++.+-.+|.+.+++..+ ..+..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~----~--------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD----E--------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH----H--------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHH----H--------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 46799999999999998772 2 248888889888754433 349999999875 554
No 169
>KOG3414|consensus
Probab=98.20 E-value=3.1e-05 Score=49.19 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=74.8
Q ss_pred ccHHHhh--ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEe
Q psy12669 35 DNVDYVR--DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMR 112 (157)
Q Consensus 35 ~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 112 (157)
...++++ ...+.+++.|...|-+.|.++...+.+.+.++ .+-..++-+|.++-+++.+-|++...|++.+|-
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~v------snfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDV------SNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHH------hhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 3455554 46678999999999999999999999999998 455778889999999999999999999998887
Q ss_pred cCccceeee--------ccc-cCHHHHHHHHHHH
Q psy12669 113 HGSIEKLEY--------RRE-RTVEALVKYVREE 137 (157)
Q Consensus 113 ~g~~~~~~~--------~g~-~~~~~l~~~l~~~ 137 (157)
+++-+...+ .+. .+.+++.+.++-.
T Consensus 86 n~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 86 NNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred cCceEEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 665443222 222 3456666666544
No 170
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.17 E-value=4.7e-05 Score=52.00 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccc-cCHHHHHHHHHHHcC
Q psy12669 61 AMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRE-RTVEALVKYVREELM 139 (157)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~~~~ 139 (157)
.....+.++++.+ .+.+.|+.+. +.++++++++.. |++++|+++......|.|. .+.+.|.+||....-
T Consensus 7 ~~~~~f~~~A~~~------~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKL------KGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHHH------TTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhC------cCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 3456788888888 5678999887 577899999999 9999999865544479998 899999999999999
Q ss_pred CCceeccC
Q psy12669 140 DPTIEIPE 147 (157)
Q Consensus 140 ~~~~~~~~ 147 (157)
|.+..++.
T Consensus 77 P~v~~~t~ 84 (184)
T PF13848_consen 77 PLVPELTP 84 (184)
T ss_dssp TSCEEEST
T ss_pred ccccccch
Confidence 98888864
No 171
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.16 E-value=1.7e-05 Score=47.25 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=59.9
Q ss_pred EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCc-cceeeecccc
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGS-IEKLEYRRER 125 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~-~~~~~~~g~~ 125 (157)
.++.|..+.|+-|..+...+..+... ..+.+-.+|+++++++..+|+. .+|.+.+=..+. .......+..
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~--------~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~ 71 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAE--------FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRF 71 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTT--------STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhh--------cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCC
Confidence 36889999999999999999887655 3599999999999999999995 799765443111 1122466789
Q ss_pred CHHHHHHHHH
Q psy12669 126 TVEALVKYVR 135 (157)
Q Consensus 126 ~~~~l~~~l~ 135 (157)
+.+.+.+|++
T Consensus 72 d~~~L~~~L~ 81 (81)
T PF05768_consen 72 DEEQLRAWLE 81 (81)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 9999999985
No 172
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.15 E-value=4.2e-05 Score=55.32 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=55.8
Q ss_pred CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC--------------------------------
Q psy12669 44 YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD-------------------------------- 91 (157)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------------------------------- 91 (157)
.+.+++.|.-+.||+|+++.+.+..+.+. +++.+..+...
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~ 188 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGK 188 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhc
Confidence 34688899999999999999987765433 12333222110
Q ss_pred ------------------CChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHH
Q psy12669 92 ------------------DYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVR 135 (157)
Q Consensus 92 ------------------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 135 (157)
++.++.+++|++++|++++-+....+. ...|..+++.|.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~-~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 189 LGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ-QVVGLPDPAQLAEIMG 249 (251)
T ss_pred cCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE-EecCCCCHHHHHHHhC
Confidence 011355679999999997776322333 4789999999988764
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.15 E-value=2.5e-05 Score=62.03 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=78.5
Q ss_pred ceeecCcccHHHhhc-cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 28 QVIELDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
+-..++++..+.+.+ ..+.-+-.|.++.|++|......+++++.. ..++..-.+|....++++++|++.++|
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-------~p~i~~~~id~~~~~~~~~~~~v~~VP 172 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL-------NPNISHTMIDGALFQDEVEALGIQGVP 172 (515)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh-------CCCceEEEEEchhCHHHHHhcCCcccC
Confidence 345667777776554 334457789999999999999999888877 357999999999999999999999999
Q ss_pred eEEEEecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 107 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
++++ +|+. .+.|..+.+++.+.+.+...
T Consensus 173 ~~~i--~~~~---~~~g~~~~~~~~~~l~~~~~ 200 (515)
T TIGR03140 173 AVFL--NGEE---FHNGRMDLAELLEKLEETAG 200 (515)
T ss_pred EEEE--CCcE---EEecCCCHHHHHHHHhhccC
Confidence 9965 4442 36788888888777766533
No 174
>PRK13189 peroxiredoxin; Provisional
Probab=98.13 E-value=4.9e-05 Score=54.00 Aligned_cols=89 Identities=13% Similarity=0.235 Sum_probs=61.0
Q ss_pred cCC-eEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC---------------------------Ch
Q psy12669 43 NYD-FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD---------------------------YE 94 (157)
Q Consensus 43 ~~~-~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~ 94 (157)
.++ .+|+.|+++||+.|....+.+.+.+.++++. ++.++.+.++. +.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-----~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~ 108 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-----NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRG 108 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-----CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCcc
Confidence 355 5566789999999999999999999998643 35555554442 23
Q ss_pred hhHhhCCCC-------CCCeEEEEe-cCccceeeec----cccCHHHHHHHHHHH
Q psy12669 95 SVCEDYNIV-------KYPTVKIMR-HGSIEKLEYR----RERTVEALVKYVREE 137 (157)
Q Consensus 95 ~~~~~~~i~-------~~P~~~~~~-~g~~~~~~~~----g~~~~~~l~~~l~~~ 137 (157)
++++.|++. ..|+++++. +|.... ... ..++.+++...+...
T Consensus 109 ~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~-~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 109 EIAKKLGMISPGKGTNTVRAVFIIDPKGIIRA-ILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHHHHhCCCccccCCCceeEEEEECCCCeEEE-EEecCCCCCCCHHHHHHHHHHh
Confidence 556778865 468888997 555443 222 345677888887654
No 175
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.09 E-value=0.00013 Score=46.92 Aligned_cols=95 Identities=12% Similarity=0.175 Sum_probs=69.4
Q ss_pred ccHHHhh--ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeE-EEE
Q psy12669 35 DNVDYVR--DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTV-KIM 111 (157)
Q Consensus 35 ~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~-~~~ 111 (157)
-..++++ ..++.+++.|..+|-+.|.++...+.++++.+ ++-..++.+|.++-+++.+.|.+. -|.. .+|
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v------~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKV------KNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHH------TTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHh------hcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 3556654 57889999999999999999999999999998 566889999999999999999999 7764 444
Q ss_pred ecCccceeee--------ccc-cCHHHHHHHHHH
Q psy12669 112 RHGSIEKLEY--------RRE-RTVEALVKYVRE 136 (157)
Q Consensus 112 ~~g~~~~~~~--------~g~-~~~~~l~~~l~~ 136 (157)
.+++-+...+ .+. .+.+++.+-++-
T Consensus 82 ~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 82 FRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp ETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred ecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 4666554333 222 335666665554
No 176
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.07 E-value=7.1e-05 Score=52.89 Aligned_cols=89 Identities=15% Similarity=0.262 Sum_probs=62.5
Q ss_pred CCe-EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC---------------------------Chh
Q psy12669 44 YDF-VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD---------------------------YES 95 (157)
Q Consensus 44 ~~~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~ 95 (157)
++. +|+.|++.||+.|....+.+.++..++++. ++.++.+.++. +.+
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-----gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~ 102 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-----NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGK 102 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-----CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCch
Confidence 444 578899999999999999999999998744 35666665553 235
Q ss_pred hHhhCCCC-------CCCeEEEEe-cCccceee-ec--cccCHHHHHHHHHHH
Q psy12669 96 VCEDYNIV-------KYPTVKIMR-HGSIEKLE-YR--RERTVEALVKYVREE 137 (157)
Q Consensus 96 ~~~~~~i~-------~~P~~~~~~-~g~~~~~~-~~--g~~~~~~l~~~l~~~ 137 (157)
+++.|++. ..|+++++. +|+..... |. ..++.+++...+...
T Consensus 103 va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 103 VSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 56778863 579999997 56554321 21 235678888888654
No 177
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.06 E-value=9.9e-05 Score=53.53 Aligned_cols=90 Identities=14% Similarity=0.311 Sum_probs=61.9
Q ss_pred cCCeEEEEEe-cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC----------------------------C
Q psy12669 43 NYDFVLILFY-VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD----------------------------Y 93 (157)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~ 93 (157)
+++.+++.|| +.||+.|....+.+.+..+++++. ++.++.|..|. +
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-----gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~ 171 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-----GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDIS 171 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCC
Confidence 4556677766 899999999999999999998644 24444444332 2
Q ss_pred hhhHhhCCCC-----CCCeEEEEe-cCccceee-e--ccccCHHHHHHHHHHH
Q psy12669 94 ESVCEDYNIV-----KYPTVKIMR-HGSIEKLE-Y--RRERTVEALVKYVREE 137 (157)
Q Consensus 94 ~~~~~~~~i~-----~~P~~~~~~-~g~~~~~~-~--~g~~~~~~l~~~l~~~ 137 (157)
.++++.|++. ..|+.+++. +|...... + ...++.+++...+...
T Consensus 172 ~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 172 REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred hHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 4677888985 479999997 66655421 1 2236778887777544
No 178
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.06 E-value=3.4e-05 Score=45.69 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=41.8
Q ss_pred CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC---hhhHhhCCCCCCCeEEEEecCccc
Q psy12669 45 DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY---ESVCEDYNIVKYPTVKIMRHGSIE 117 (157)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~i~~~P~~~~~~~g~~~ 117 (157)
+.-++.|+.+||++|++....|++. ++.+-.+|++++ .++.+..+...+|+++ -+|+.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~i 68 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLI 68 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEE
Confidence 3446789999999999999888632 355666777765 3444456889999884 356443
No 179
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.05 E-value=0.00012 Score=48.35 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=26.7
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHH
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTL 73 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~ 73 (157)
+.+.+++.|+.++||+|+++.+.+.++....
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 3567899999999999999999998877654
No 180
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.01 E-value=1.9e-05 Score=46.88 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=41.3
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-h----hhHhhCCCCCCCeEEEEecCccc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-E----SVCEDYNIVKYPTVKIMRHGSIE 117 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~----~~~~~~~i~~~P~~~~~~~g~~~ 117 (157)
++.|+++|||+|+.+.+.+.++... ..+..++.+.+ . .+.+..+..++|++ |-+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----------PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 4779999999999999988886543 45666666654 2 34455688899986 4556443
No 181
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.95 E-value=0.00017 Score=50.95 Aligned_cols=89 Identities=12% Similarity=0.213 Sum_probs=61.1
Q ss_pred cCCe-EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC---------------------------h
Q psy12669 43 NYDF-VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY---------------------------E 94 (157)
Q Consensus 43 ~~~~-~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~ 94 (157)
.++. +|+.|+++||+.|....+.+.+.+.++++. ++.++.+.++.. .
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-----g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~ 106 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-----NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMG 106 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCch
Confidence 3454 445889999999999999999999999744 355666655522 3
Q ss_pred hhHhhCCCC-------CCCeEEEEe-cCccceeeec----cccCHHHHHHHHHHH
Q psy12669 95 SVCEDYNIV-------KYPTVKIMR-HGSIEKLEYR----RERTVEALVKYVREE 137 (157)
Q Consensus 95 ~~~~~~~i~-------~~P~~~~~~-~g~~~~~~~~----g~~~~~~l~~~l~~~ 137 (157)
++++.|++. ..|+.+++. +|.... .+. ..++.+++...+...
T Consensus 107 ~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~-~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 107 NVAKRLGMIHAESSTATVRAVFIVDDKGTVRL-ILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHHHHcCCcccccCCceeEEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHHh
Confidence 555677763 368888887 554443 221 226788888888654
No 182
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.89 E-value=0.0005 Score=45.93 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=60.4
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh----------------------------
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE---------------------------- 94 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------------------- 94 (157)
..+++++.|+...|++|+++.+.+.++.+.+-+ .+++.+...+.-...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~----~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 86 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYID----PGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLF 86 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT----TTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC----CCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456799999999999999999999888877622 356777777653110
Q ss_pred ----------------------------------------hhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 95 ----------------------------------------SVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 95 ----------------------------------------~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
..+++++|.++|++++ +|+. +.|..+.+++.+.|
T Consensus 87 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~----~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 87 SQQENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY----VVGPYTIEELKELI 160 (162)
T ss_dssp HHCHSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE----EETTTSHHHHHHHH
T ss_pred HhhhccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE----eCCCCCHHHHHHHH
Confidence 2224568999999887 6654 45778888988888
Q ss_pred HH
Q psy12669 135 RE 136 (157)
Q Consensus 135 ~~ 136 (157)
++
T Consensus 161 d~ 162 (162)
T PF13462_consen 161 DK 162 (162)
T ss_dssp HH
T ss_pred cC
Confidence 64
No 183
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.88 E-value=0.00014 Score=58.32 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=74.5
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEe-cCccceeee
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMR-HGSIEKLEY 121 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~ 121 (157)
.++..++.|+.+.|..|.+....+++++.. .+++.+...|..++.+.+++|++...|++.+++ +|+...++|
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-------s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f 437 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASL-------SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKF 437 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhc-------CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEE
Confidence 445578889999999999999999988854 567989889998889999999999999999995 666665689
Q ss_pred ccccCHHHHHHHHHHHcC
Q psy12669 122 RRERTVEALVKYVREELM 139 (157)
Q Consensus 122 ~g~~~~~~l~~~l~~~~~ 139 (157)
.|-..-.++..|+...+.
T Consensus 438 ~g~P~G~Ef~s~i~~i~~ 455 (555)
T TIGR03143 438 HGVPSGHELNSFILALYN 455 (555)
T ss_pred EecCccHhHHHHHHHHHH
Confidence 998777777777777644
No 184
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.82 E-value=0.00037 Score=48.65 Aligned_cols=89 Identities=16% Similarity=0.334 Sum_probs=60.3
Q ss_pred cCCeEEEEEec-CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC----------------------------
Q psy12669 43 NYDFVLILFYV-KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY---------------------------- 93 (157)
Q Consensus 43 ~~~~~lv~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------------- 93 (157)
.++.++|.||+ .||+.|....+.+.++++++++. ++.++.|+.+..
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-----g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~ 109 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-----NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKT 109 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-----CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcH
Confidence 46788889995 78999999999999999998643 466666666522
Q ss_pred hhhHhhCCCC------CCCeEEEEe-cCccceeeecc----ccCHHHHHHHHHHH
Q psy12669 94 ESVCEDYNIV------KYPTVKIMR-HGSIEKLEYRR----ERTVEALVKYVREE 137 (157)
Q Consensus 94 ~~~~~~~~i~------~~P~~~~~~-~g~~~~~~~~g----~~~~~~l~~~l~~~ 137 (157)
.++++.|++. .+|..+++. +|+... .+.+ .++.+++.+.+...
T Consensus 110 ~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~-~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 110 KSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ-ITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred hHHHHHcCCcccCCCceEEEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHhh
Confidence 2456678875 368888887 554443 3322 24556666666544
No 185
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.79 E-value=0.00045 Score=41.15 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=50.7
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH---hhCCCCCCCeEEEEecCccceeeeccc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC---EDYNIVKYPTVKIMRHGSIEKLEYRRE 124 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~---~~~~i~~~P~~~~~~~g~~~~~~~~g~ 124 (157)
+..|..+||++|++.+..+.+ .++.|-.+|++++++.. +..+...+|++++ ++. ... .
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~~~-G 63 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----SWS-G 63 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----EEe-c
Confidence 567899999999998877732 24888889998877543 3356788998854 332 122 4
Q ss_pred cCHHHHHHHHHHHc
Q psy12669 125 RTVEALVKYVREEL 138 (157)
Q Consensus 125 ~~~~~l~~~l~~~~ 138 (157)
.+.+.|.+++....
T Consensus 64 f~~~~l~~~~~~~~ 77 (81)
T PRK10329 64 FRPDMINRLHPAPH 77 (81)
T ss_pred CCHHHHHHHHHhhh
Confidence 77788888776543
No 186
>PHA03050 glutaredoxin; Provisional
Probab=97.77 E-value=0.00013 Score=45.94 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=43.0
Q ss_pred HHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC---C----hhhHhhCCCCCCCeEEE
Q psy12669 38 DYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD---Y----ESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 38 ~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---~----~~~~~~~~i~~~P~~~~ 110 (157)
++.+++++ ++.|..+|||+|++....|++..... . .+-.+|+++ . .++.+..+-+.+|++
T Consensus 7 ~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~-------~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I-- 73 (108)
T PHA03050 7 QQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR-------G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRI-- 73 (108)
T ss_pred HHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc-------C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--
Confidence 45555555 56799999999999998887664321 1 344555554 2 234455678899988
Q ss_pred EecCccc
Q psy12669 111 MRHGSIE 117 (157)
Q Consensus 111 ~~~g~~~ 117 (157)
|-+|+.+
T Consensus 74 fI~g~~i 80 (108)
T PHA03050 74 FFGKTSI 80 (108)
T ss_pred EECCEEE
Confidence 4445444
No 187
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.76 E-value=0.00012 Score=45.40 Aligned_cols=64 Identities=9% Similarity=0.054 Sum_probs=40.6
Q ss_pred HhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChh-------hHhhCCCCCCCeEEEE
Q psy12669 39 YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYES-------VCEDYNIVKYPTVKIM 111 (157)
Q Consensus 39 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-------~~~~~~i~~~P~~~~~ 111 (157)
+.+++++ ++.|..+|||+|++....+.+. ++.+..+|+++.++ +.+..+.+.+|++ |
T Consensus 3 ~~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~------------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--f 66 (99)
T TIGR02189 3 RMVSEKA--VVIFSRSSCCMCHVVKRLLLTL------------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--F 66 (99)
T ss_pred hhhccCC--EEEEECCCCHHHHHHHHHHHHc------------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--E
Confidence 3444444 5679999999999999866543 24445666665432 2333467889987 5
Q ss_pred ecCccce
Q psy12669 112 RHGSIEK 118 (157)
Q Consensus 112 ~~g~~~~ 118 (157)
-+|+.+.
T Consensus 67 i~g~~iG 73 (99)
T TIGR02189 67 VGGKLVG 73 (99)
T ss_pred ECCEEEc
Confidence 5565443
No 188
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.73 E-value=9.3e-05 Score=42.96 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=45.3
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh---CCCCCCCeEEEEecCccceeeecccc
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED---YNIVKYPTVKIMRHGSIEKLEYRRER 125 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~---~~i~~~P~~~~~~~g~~~~~~~~g~~ 125 (157)
..|+.++|++|++....+.+ .++.+-.+|++++++.... .+...+|++++ +|.. +.|..
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~----~~~G~ 63 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL----SWSGF 63 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc----EEecc
Confidence 56888999999999987753 2477888898887755544 47788998744 3321 23345
Q ss_pred CHHHHHH
Q psy12669 126 TVEALVK 132 (157)
Q Consensus 126 ~~~~l~~ 132 (157)
+++.|.+
T Consensus 64 ~~~~~~~ 70 (72)
T TIGR02194 64 RPDKLKA 70 (72)
T ss_pred CHHHHHh
Confidence 6665554
No 189
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.70 E-value=0.00045 Score=46.91 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=28.2
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHH
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTL 73 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~ 73 (157)
.+++.++.|+...||+|+.+.+.+..+.+++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~ 44 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL 44 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC
Confidence 5778999999999999999999999888775
No 190
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.68 E-value=0.00043 Score=40.06 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=44.3
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChh---hHhhCCCCCCCeEEEEecCccceeeeccc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYES---VCEDYNIVKYPTVKIMRHGSIEKLEYRRE 124 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---~~~~~~i~~~P~~~~~~~g~~~~~~~~g~ 124 (157)
++.|..+||++|.+....+.+. ++.+..+|.+++.. +....+...+|.+ |-+|+.+ |
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i-----g- 62 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI-----G- 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE-----e-
Confidence 5779999999999998777632 35666777776542 2233578899987 4556433 2
Q ss_pred cCHHHHHHHH
Q psy12669 125 RTVEALVKYV 134 (157)
Q Consensus 125 ~~~~~l~~~l 134 (157)
..+++.+|+
T Consensus 63 -g~~~l~~~l 71 (72)
T cd03029 63 -GSDDLEKYF 71 (72)
T ss_pred -CHHHHHHHh
Confidence 356666664
No 191
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.67 E-value=0.0002 Score=40.80 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=40.0
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhh----HhhCCCCCCCeEEEEecCccce
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESV----CEDYNIVKYPTVKIMRHGSIEK 118 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~i~~~P~~~~~~~g~~~~ 118 (157)
++.|+++||++|+...+.+.+.. +.+..+|.+.+.+. .+..+...+|++ |.+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------------IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 56799999999999998776443 55677888776543 334567788876 44665544
No 192
>KOG3171|consensus
Probab=97.66 E-value=0.00041 Score=48.31 Aligned_cols=104 Identities=14% Similarity=0.193 Sum_probs=83.4
Q ss_pred CceeecCc-ccHHHhhccC---CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCC
Q psy12669 27 SQVIELDT-DNVDYVRDNY---DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNI 102 (157)
Q Consensus 27 ~~v~~l~~-~~~~~~~~~~---~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i 102 (157)
..|.+++. +.|-+.+++. -.++|++|-+.-+.|..+...+.-+|.++ ..+.|.++-.+. -...++|..
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-------P~vKFckikss~-~gas~~F~~ 209 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-------PIVKFCKIKSSN-TGASDRFSL 209 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-------CceeEEEeeecc-ccchhhhcc
Confidence 35677765 7888877544 35889999999999999999999999886 579999988776 356788999
Q ss_pred CCCCeEEEEecCccceeeec-------cccCHHHHHHHHHHHcC
Q psy12669 103 VKYPTVKIMRHGSIEKLEYR-------RERTVEALVKYVREELM 139 (157)
Q Consensus 103 ~~~P~~~~~~~g~~~~~~~~-------g~~~~~~l~~~l~~~~~ 139 (157)
.++|++.+|++|+.+. .|. ....+.++..|++++--
T Consensus 210 n~lP~LliYkgGeLIg-NFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 210 NVLPTLLIYKGGELIG-NFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred cCCceEEEeeCCchhH-HHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 9999999999999875 332 34678899999998743
No 193
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.61 E-value=0.00015 Score=42.83 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=38.7
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH----hhCCCCCCCeEEEEecCccc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC----EDYNIVKYPTVKIMRHGSIE 117 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~P~~~~~~~g~~~ 117 (157)
++.|+.+||++|++....+++. ++.+-.+|++.+++.. +..+...+|++ |-+|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 3568899999999999888642 2556666777665443 33477889987 4455433
No 194
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.54 E-value=0.00034 Score=40.65 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=38.9
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHh----hCCCC-CCCeEEEEecCccc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCE----DYNIV-KYPTVKIMRHGSIE 117 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~----~~~i~-~~P~~~~~~~g~~~ 117 (157)
++.|+.++|++|++....+++. ++.+-.+|++.+++..+ ..+.. .+|++ |-+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 5678999999999998877642 36677778877654433 35666 89976 4455443
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.51 E-value=0.00067 Score=40.89 Aligned_cols=59 Identities=10% Similarity=0.224 Sum_probs=42.8
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC--CC------------------------------hh
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD--DY------------------------------ES 95 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~------------------------------~~ 95 (157)
+..|+.+.|++|..+.+.+.++.... .+++.+...... .. ..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYAD------DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTA 74 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhc------CCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 46799999999999999999987443 345666555432 21 13
Q ss_pred hHhhCCCCCCCeEEEEe
Q psy12669 96 VCEDYNIVKYPTVKIMR 112 (157)
Q Consensus 96 ~~~~~~i~~~P~~~~~~ 112 (157)
.+.++++.++|++++..
T Consensus 75 ~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 75 LARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHcCCCCCCEEEECC
Confidence 45678999999998765
No 196
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.49 E-value=0.00049 Score=39.95 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=39.7
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChh----hHhhCCCCCCCeEEEEecCccc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYES----VCEDYNIVKYPTVKIMRHGSIE 117 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~~ 117 (157)
++.|+.+||++|++....+++. ++.+-.+|+++.++ +.+..+-..+|++ |-+|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5679999999999999877742 36677778887654 4444567788987 4445443
No 197
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.46 E-value=0.004 Score=38.62 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=64.4
Q ss_pred eec-CcccHHHhhc-cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCe
Q psy12669 30 IEL-DTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107 (157)
Q Consensus 30 ~~l-~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 107 (157)
..+ +.++++++++ .+..++|-|+..--. .....+.++|..+ .....|+... +.++.+.+++. .|.
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~------R~d~~F~~~~---~~~~~~~~~~~-~~~ 69 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEF------HPYIKFFATF---DSKVAKKLGLK-MNE 69 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhh------hcCCEEEEEC---cHHHHHHcCCC-CCc
Confidence 444 4456888887 777777777765323 4566788888887 3456675432 34566777664 688
Q ss_pred EEEEec-Cccceeee-ccccCHHHHHHHHHHH
Q psy12669 108 VKIMRH-GSIEKLEY-RRERTVEALVKYVREE 137 (157)
Q Consensus 108 ~~~~~~-g~~~~~~~-~g~~~~~~l~~~l~~~ 137 (157)
++++++ +.... .| .|..+.+.|.+||...
T Consensus 70 i~l~~~~~e~~~-~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 70 VDFYEPFMEEPV-TIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEEeCCCCCCCc-ccCCCCCCHHHHHHHHHHh
Confidence 999975 33333 58 7788999999999764
No 198
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.38 E-value=0.0038 Score=38.93 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=62.4
Q ss_pred CcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEe
Q psy12669 33 DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMR 112 (157)
Q Consensus 33 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 112 (157)
+.+++++.++.++.++|-|+..--. .....+.+++..+ .....|+... ..++.+.+++ .|++++|+
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~------R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTL------RESFRFAHTS---DKQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhh------hhcCEEEEEC---hHHHHHhcCC--CCceEEEe
Confidence 3456777777788777777766432 4667888888887 3456775543 2466778888 68888884
Q ss_pred cC------ccceeeeccccCHHHHHHHHHHH
Q psy12669 113 HG------SIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 113 ~g------~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
+. ..-...|.|..+.+.|.+|+...
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 31 12222589988899999999864
No 199
>KOG3170|consensus
Probab=97.36 E-value=0.0015 Score=45.15 Aligned_cols=102 Identities=14% Similarity=0.231 Sum_probs=77.9
Q ss_pred CCceeecCcccHHH-hh--ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCC
Q psy12669 26 NSQVIELDTDNVDY-VR--DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNI 102 (157)
Q Consensus 26 ~~~v~~l~~~~~~~-~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i 102 (157)
-+.|.+++..+|-. +. .++--|+|+.|...-+.|+-+...++.++..+ ..+.|+++-.+.. ...|.=
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-------p~iKFVki~at~c---IpNYPe 159 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-------PQIKFVKIPATTC---IPNYPE 159 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC-------CcceEEecccccc---cCCCcc
Confidence 46788999988865 43 34446889999999999999999999999997 5688888766543 234566
Q ss_pred CCCCeEEEEecCccceeeec------cc-cCHHHHHHHHHHHc
Q psy12669 103 VKYPTVKIMRHGSIEKLEYR------RE-RTVEALVKYVREEL 138 (157)
Q Consensus 103 ~~~P~~~~~~~g~~~~~~~~------g~-~~~~~l~~~l~~~~ 138 (157)
...||+++|..|.... .+. |. .+.+++..++.+.-
T Consensus 160 ~nlPTl~VY~~G~lk~-q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 160 SNLPTLLVYHHGALKK-QMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred cCCCeEEEeecchHHh-heehhhhhcCCcCCHHHHHHHHHhcc
Confidence 7889999999997664 443 44 55788888887764
No 200
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00089 Score=39.77 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=36.1
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-----hhHhhC-CCCCCCeEEE
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-----SVCEDY-NIVKYPTVKI 110 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~~~~-~i~~~P~~~~ 110 (157)
++.|..++||+|++....+.+ .++.+..++.++.+ +..++- +.+.+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567889999999999987772 23666666766554 334444 7899998743
No 201
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.29 E-value=0.0018 Score=39.94 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=41.4
Q ss_pred HHHhhccCCeEEEEEe----cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH----hhCCCCCCCeE
Q psy12669 37 VDYVRDNYDFVLILFY----VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC----EDYNIVKYPTV 108 (157)
Q Consensus 37 ~~~~~~~~~~~lv~f~----~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~P~~ 108 (157)
.++.+++++ ++|+-. .+|||+|++....|.+. ++.+..+|++++++.. +..+-..+|.+
T Consensus 5 v~~~i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v 71 (97)
T TIGR00365 5 IKEQIKENP-VVLYMKGTPQFPQCGFSARAVQILKAC------------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL 71 (97)
T ss_pred HHHHhccCC-EEEEEccCCCCCCCchHHHHHHHHHHc------------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 455665555 444333 28999999999877653 2556677887665443 33566788977
Q ss_pred EEEecCccc
Q psy12669 109 KIMRHGSIE 117 (157)
Q Consensus 109 ~~~~~g~~~ 117 (157)
|-+|+.+
T Consensus 72 --fi~g~~i 78 (97)
T TIGR00365 72 --YVKGEFV 78 (97)
T ss_pred --EECCEEE
Confidence 3455443
No 202
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.11 E-value=0.0038 Score=42.76 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.9
Q ss_pred EEecCCChHHHhhhHHHHHHHHHHH
Q psy12669 50 LFYVKWCRFSVAMLPTFDEVLVTLI 74 (157)
Q Consensus 50 ~f~~~~C~~C~~~~~~~~~~~~~~~ 74 (157)
+|+.|.|+.|-..+|.|.++...+.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~ 26 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYG 26 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcC
Confidence 5899999999999999999999984
No 203
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.01 E-value=0.011 Score=42.10 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=44.7
Q ss_pred cCCCCceeecCccc---HHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHH
Q psy12669 23 SVNNSQVIELDTDN---VDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLI 74 (157)
Q Consensus 23 ~~~~~~v~~l~~~~---~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~ 74 (157)
.++++++..+++.+ +-+..++++|.+++|.+-.||+=..-.+.++++++++.
T Consensus 78 ~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~ 132 (237)
T PF00837_consen 78 PAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFS 132 (237)
T ss_pred CCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhh
Confidence 34578899999877 44566899999999999999999999999999999985
No 204
>PRK10638 glutaredoxin 3; Provisional
Probab=96.97 E-value=0.0034 Score=37.36 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=38.6
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhh----HhhCCCCCCCeEEEEecCccc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESV----CEDYNIVKYPTVKIMRHGSIE 117 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~i~~~P~~~~~~~g~~~ 117 (157)
++.|..+||++|++....+++. ++.+..+|++.+++. .+..+...+|++ |-+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5678889999999999877742 355666777766533 344577789977 3356444
No 205
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.94 E-value=0.0049 Score=37.37 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=39.6
Q ss_pred HhhccCCeEEEEEec----CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH----hhCCCCCCCeEEE
Q psy12669 39 YVRDNYDFVLILFYV----KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC----EDYNIVKYPTVKI 110 (157)
Q Consensus 39 ~~~~~~~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~P~~~~ 110 (157)
+.+++++ ++|+-.+ +||++|++....+.... +.+..+|++++++.. +..+-+.+|++
T Consensus 3 ~~i~~~~-vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v-- 67 (90)
T cd03028 3 KLIKENP-VVLFMKGTPEEPRCGFSRKVVQILNQLG------------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL-- 67 (90)
T ss_pred hhhccCC-EEEEEcCCCCCCCCcHHHHHHHHHHHcC------------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--
Confidence 4454444 4443332 79999999987775532 556667776665443 34577789987
Q ss_pred EecCccc
Q psy12669 111 MRHGSIE 117 (157)
Q Consensus 111 ~~~g~~~ 117 (157)
|-+|+.+
T Consensus 68 fi~g~~i 74 (90)
T cd03028 68 YVNGELV 74 (90)
T ss_pred EECCEEE
Confidence 4456433
No 206
>KOG1752|consensus
Probab=96.84 E-value=0.011 Score=36.84 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-hhHhh----CCCCCCCeEEEE
Q psy12669 37 VDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-SVCED----YNIVKYPTVKIM 111 (157)
Q Consensus 37 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~----~~i~~~P~~~~~ 111 (157)
+++.+.+++ +|.|..+||++|+++...|.. + .....+..+|-..+. ++-+. -+-+.+|.+ |
T Consensus 7 v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~------~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--F 72 (104)
T KOG1752|consen 7 VRKMISENP--VVIFSKSSCPYCHRAKELLSD----L------GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--F 72 (104)
T ss_pred HHHHhhcCC--EEEEECCcCchHHHHHHHHHh----C------CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--E
Confidence 455665554 366999999999998887777 3 345677777776543 33322 345678876 4
Q ss_pred ecCccc
Q psy12669 112 RHGSIE 117 (157)
Q Consensus 112 ~~g~~~ 117 (157)
-+|+-+
T Consensus 73 I~Gk~i 78 (104)
T KOG1752|consen 73 IGGKFI 78 (104)
T ss_pred ECCEEE
Confidence 455433
No 207
>PRK10824 glutaredoxin-4; Provisional
Probab=96.78 E-value=0.0054 Score=38.99 Aligned_cols=66 Identities=11% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHhhccCCeEEEEEec----CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh----CCCCCCCeE
Q psy12669 37 VDYVRDNYDFVLILFYV----KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED----YNIVKYPTV 108 (157)
Q Consensus 37 ~~~~~~~~~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~----~~i~~~P~~ 108 (157)
.++.+++++ ++|+-.+ ||||+|++....|.... +.+..+|.+.+.++... -+-+.+|.+
T Consensus 8 v~~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI 74 (115)
T PRK10824 8 IQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQALSACG------------ERFAYVDILQNPDIRAELPKYANWPTFPQL 74 (115)
T ss_pred HHHHHhcCC-EEEEECCCCCCCCCchHHHHHHHHHHcC------------CCceEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 455665555 4443333 69999999998776653 23344566655544433 355667765
Q ss_pred EEEecCccc
Q psy12669 109 KIMRHGSIE 117 (157)
Q Consensus 109 ~~~~~g~~~ 117 (157)
|-+|+-+
T Consensus 75 --FI~G~~I 81 (115)
T PRK10824 75 --WVDGELV 81 (115)
T ss_pred --EECCEEE
Confidence 4456444
No 208
>KOG2640|consensus
Probab=96.77 E-value=0.00059 Score=50.05 Aligned_cols=88 Identities=28% Similarity=0.504 Sum_probs=67.5
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEe-CCCChhhHhhCCCCCCCeEEEEecCccceeee
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN-CDDYESVCEDYNIVKYPTVKIMRHGSIEKLEY 121 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd-~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~ 121 (157)
+..++-+.||+.|||..+..+|.++-....+ . .+....++ ...-+....+|++.+.|++.+-...-.. +|
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~------~-~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~--~~ 145 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLF------S-SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPA--SY 145 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhc------c-ccccccHHHHhhcccchhccccccCCcceeeccccch--hh
Confidence 3668999999999999999999998777665 1 23333322 2234577789999999998776644343 69
Q ss_pred ccccCHHHHHHHHHHHcC
Q psy12669 122 RRERTVEALVKYVREELM 139 (157)
Q Consensus 122 ~g~~~~~~l~~~l~~~~~ 139 (157)
.|.++...+++|..+.++
T Consensus 146 ~~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 146 RGERDLASLVNFYTEITP 163 (319)
T ss_pred cccccHHHHHHHHHhhcc
Confidence 999999999999999886
No 209
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.64 E-value=0.066 Score=32.78 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=53.4
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeec
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYR 122 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~ 122 (157)
.++..++.|..+. ..|......+++++.. ..++.+-..+.+. ..|++.+..+|+...++|.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~l-------SdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~ 78 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASL-------SDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFA 78 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHh-------CCceEEEEecCCC-----------CCCEEEEecCCCcccEEEE
Confidence 4555666776665 8999998888888866 3566665433221 3699999888766556899
Q ss_pred cccCHHHHHHHHHH
Q psy12669 123 RERTVEALVKYVRE 136 (157)
Q Consensus 123 g~~~~~~l~~~l~~ 136 (157)
|-..-.++..++..
T Consensus 79 GiP~GhEf~Slila 92 (94)
T cd02974 79 GIPMGHEFTSLVLA 92 (94)
T ss_pred ecCCchhHHHHHHH
Confidence 98887788877754
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=96.43 E-value=0.014 Score=40.91 Aligned_cols=66 Identities=20% Similarity=0.363 Sum_probs=39.8
Q ss_pred HHHhhccCCeEEEEE----ecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh----CCCCCCCeE
Q psy12669 37 VDYVRDNYDFVLILF----YVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED----YNIVKYPTV 108 (157)
Q Consensus 37 ~~~~~~~~~~~lv~f----~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~----~~i~~~P~~ 108 (157)
.++.+++++ ++|.- +.|+|++|++....+.+. ++.+..+|++++++..+. .+-..+|.+
T Consensus 106 v~~li~~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqV 172 (204)
T PTZ00062 106 IERLIRNHK-ILLFMKGSKTFPFCRFSNAVVNMLNSS------------GVKYETYNIFEDPDLREELKVYSNWPTYPQL 172 (204)
T ss_pred HHHHHhcCC-EEEEEccCCCCCCChhHHHHHHHHHHc------------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeE
Confidence 344555554 44433 337999999988777632 366777888877655433 355667766
Q ss_pred EEEecCccc
Q psy12669 109 KIMRHGSIE 117 (157)
Q Consensus 109 ~~~~~g~~~ 117 (157)
+ -+|+.+
T Consensus 173 f--I~G~~I 179 (204)
T PTZ00062 173 Y--VNGELI 179 (204)
T ss_pred E--ECCEEE
Confidence 4 345433
No 211
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.25 E-value=0.013 Score=45.59 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=36.5
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH---hh---------CCCCCCCeEEE
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC---ED---------YNIVKYPTVKI 110 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~---~~---------~~i~~~P~~~~ 110 (157)
++.|..+|||+|++....+.+. ++.+-.+|+++.++.. ++ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 5679999999999988666542 3667788888765322 22 36778998854
No 212
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.025 Score=46.02 Aligned_cols=88 Identities=14% Similarity=0.150 Sum_probs=67.9
Q ss_pred CCCCceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHH---HHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhC
Q psy12669 24 VNNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTF---DEVLVTLINLLPEPRKFAITKINCDDYESVCEDY 100 (157)
Q Consensus 24 ~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~ 100 (157)
.++-+...=.++.|+++...++|+++-+-..||.-|+-|..+= ++++..++ ..+.-++||-++-+++-+.|
T Consensus 23 ~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN------~~FV~IKVDREERPDvD~~Y 96 (667)
T COG1331 23 HNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN------ENFVPVKVDREERPDVDSLY 96 (667)
T ss_pred CCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH------hCceeeeEChhhccCHHHHH
Confidence 3445566667889999999999999999999999999997633 55677774 45788899999988777665
Q ss_pred C--------CCCCCeEEEE-ecCccc
Q psy12669 101 N--------IVKYPTVKIM-RHGSIE 117 (157)
Q Consensus 101 ~--------i~~~P~~~~~-~~g~~~ 117 (157)
. -.++|..++. ++|++.
T Consensus 97 m~~~q~~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 97 MNASQAITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred HHHHHHhccCCCCceeEEECCCCcee
Confidence 3 5589987666 577664
No 213
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.89 E-value=0.22 Score=31.18 Aligned_cols=91 Identities=9% Similarity=0.150 Sum_probs=57.8
Q ss_pred CcccHHHhhccC-CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEE
Q psy12669 33 DTDNVDYVRDNY-DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 33 ~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 111 (157)
+.+++++.+..+ +.++|-|+..--+ .....+.++|..+ .....|+...- .++.+++++. .|.+++|
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~------Rdd~~F~~t~~---~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSL------REDYKFHHTFD---SEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhc------ccCCEEEEECh---HHHHHhcCCC-CCceEEE
Confidence 345677777665 6777767665322 3567788888887 45677755432 4666777775 4667777
Q ss_pred ecCccc------eeeeccc-cCHHH-HHHHHHH
Q psy12669 112 RHGSIE------KLEYRRE-RTVEA-LVKYVRE 136 (157)
Q Consensus 112 ~~g~~~------~~~~~g~-~~~~~-l~~~l~~ 136 (157)
++.... ...|.|. .+.++ |..|+.+
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 433221 2257777 56655 9999975
No 214
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.33 E-value=0.056 Score=36.17 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=40.0
Q ss_pred HHHhhccCCeEEEEEecCCChHHHhh-hHHHHHHHHHHHhcCCCCCce-EEEEEeCCCC---hhhHhhCCC
Q psy12669 37 VDYVRDNYDFVLILFYVKWCRFSVAM-LPTFDEVLVTLINLLPEPRKF-AITKINCDDY---ESVCEDYNI 102 (157)
Q Consensus 37 ~~~~~~~~~~~lv~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~~v-~~~~vd~~~~---~~~~~~~~i 102 (157)
+.+...++..+++.|.+.||+.|... .+.+.+...++++. ++ .++.+..+.. .+.++++++
T Consensus 23 L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-----g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 23 LSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-----GVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred HHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-----CCCEEEEEECCCHHHHHHHHHhhCC
Confidence 33433444566777788999999999 99999999888654 24 3555555532 234445554
No 215
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.21 E-value=0.13 Score=29.78 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=47.0
Q ss_pred EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEE
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 111 (157)
.+..|-+...+.+++....+.++-+... .++..+-.+|..+++++++.++|-..||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-----~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-----GGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-----CCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 4555666666777777777777665543 56899999999999999999999999997644
No 216
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=94.83 E-value=0.8 Score=31.25 Aligned_cols=27 Identities=11% Similarity=0.314 Sum_probs=23.5
Q ss_pred EEEEEecCCChHHHhhhHHHHHHHHHH
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDEVLVTL 73 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~~~~~~ 73 (157)
++..|+..-||+|-...+.+.++.+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~ 27 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEY 27 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999988887
No 217
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.80 E-value=0.34 Score=38.84 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=54.9
Q ss_pred CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccc
Q psy12669 45 DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRE 124 (157)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~ 124 (157)
+++-+.++.+.|..|.++...+++++.. .+++.+-..+.+ ...|++.+..+|+...++|.|-
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~-------s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~ 80 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASL-------SDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGI 80 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHh-------CCceEEEEccCC-----------CCCCEEEEEcCCccceEEEEec
Confidence 3443444455799999999988888866 456666442211 2479999988887777799998
Q ss_pred cCHHHHHHHHHHHcC
Q psy12669 125 RTVEALVKYVREELM 139 (157)
Q Consensus 125 ~~~~~l~~~l~~~~~ 139 (157)
..-.++..|+...+.
T Consensus 81 P~g~Ef~s~i~~i~~ 95 (517)
T PRK15317 81 PMGHEFTSLVLALLQ 95 (517)
T ss_pred CccHHHHHHHHHHHH
Confidence 888888888777644
No 218
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=94.63 E-value=0.45 Score=27.40 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=48.9
Q ss_pred EEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-ChhhHhhCCCCCCCeEEEEecCccceeeeccccCHH
Q psy12669 50 LFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-YESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVE 128 (157)
Q Consensus 50 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~ 128 (157)
.++.++|++|++.+-.++...- .+.+..++..+ ..++.+...-..+|++. .+|..+ .+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----------~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l-------~dS~ 61 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----------PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL-------TDSA 61 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----------EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE-------ESHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----------eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE-------eCHH
Confidence 3788999999998755543332 34555555554 34556666677899986 555533 3677
Q ss_pred HHHHHHHHHcCCC
Q psy12669 129 ALVKYVREELMDP 141 (157)
Q Consensus 129 ~l~~~l~~~~~~~ 141 (157)
.|.+++.+..+.+
T Consensus 62 ~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 62 AIIEYLEERYPGP 74 (75)
T ss_dssp HHHHHHHHHSTSS
T ss_pred HHHHHHHHHcCCC
Confidence 8999998887654
No 219
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=94.54 E-value=0.67 Score=29.02 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=71.0
Q ss_pred CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH----hhCCCC-CCCeEEEEe--cCcc
Q psy12669 44 YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC----EDYNIV-KYPTVKIMR--HGSI 116 (157)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~-~~P~~~~~~--~g~~ 116 (157)
+...+|-|--+.-+.-.++.+.+.++|+++.. ..++.++-||-+..+-+. +.|+|. .-|.+-+.+ +...
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~----np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadS 95 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTD----NPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADS 95 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCc----CCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccc
Confidence 46678889999999999999999999999863 357999999999987665 346765 359998885 5556
Q ss_pred ceeeeccc---cCHHHHHHHHHHHc
Q psy12669 117 EKLEYRRE---RTVEALVKYVREEL 138 (157)
Q Consensus 117 ~~~~~~g~---~~~~~l~~~l~~~~ 138 (157)
+..+..+. .+++.+..|+...+
T Consensus 96 vW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 96 VWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred eeEecccccccCcHHHHHHHHHhhC
Confidence 65455444 67899999998753
No 220
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.27 E-value=0.4 Score=38.43 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=55.3
Q ss_pred CCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeecc
Q psy12669 44 YDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRR 123 (157)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g 123 (157)
++..++.|.. .|..|.+....+++++.. .+++.+...+.+. ...|++.+..+|+...++|.|
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~-------s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g 80 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASL-------SDKISLTQNTADT----------LRKPSFTILRDGADTGIRFAG 80 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHh-------CCCeEEEEecCCc----------CCCCeEEEecCCcccceEEEe
Confidence 4444555555 799999999888888866 4567775433221 345999888888777678999
Q ss_pred ccCHHHHHHHHHHHcC
Q psy12669 124 ERTVEALVKYVREELM 139 (157)
Q Consensus 124 ~~~~~~l~~~l~~~~~ 139 (157)
-..-.++..|+...+.
T Consensus 81 ~P~g~Ef~s~i~~i~~ 96 (515)
T TIGR03140 81 IPGGHEFTSLVLAILQ 96 (515)
T ss_pred cCCcHHHHHHHHHHHH
Confidence 8887888888877544
No 221
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.06 E-value=0.23 Score=33.01 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=36.0
Q ss_pred EEEEecC------CChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH----hhCCC----CCCCeEEEEec
Q psy12669 48 LILFYVK------WCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC----EDYNI----VKYPTVKIMRH 113 (157)
Q Consensus 48 lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~i----~~~P~~~~~~~ 113 (157)
+|.|+++ +|++|++....|+.. ++.+-.+|++.+.++. +.++- ..+|.++ -+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~ 67 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VD 67 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--EC
Confidence 4556666 899999988777543 3667788887765443 33443 5678664 34
Q ss_pred Cccc
Q psy12669 114 GSIE 117 (157)
Q Consensus 114 g~~~ 117 (157)
|+.+
T Consensus 68 G~~I 71 (147)
T cd03031 68 GRYL 71 (147)
T ss_pred CEEE
Confidence 5433
No 222
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=93.95 E-value=0.39 Score=27.64 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=40.6
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccccCH
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTV 127 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~ 127 (157)
+..|+.+.|++|++.+-.+....-. .....+|.....++ +.-+-..+|+++.=.+|.... -.+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~----------y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~-----l~eS 65 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP----------YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ-----LVDS 65 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc----------eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE-----EEcH
Confidence 3467889999999998555443322 22223332222233 334456789886432211111 2356
Q ss_pred HHHHHHHHHHc
Q psy12669 128 EALVKYVREEL 138 (157)
Q Consensus 128 ~~l~~~l~~~~ 138 (157)
..|.+++.+.+
T Consensus 66 ~~I~~yL~~~~ 76 (77)
T cd03040 66 SVIISTLKTYL 76 (77)
T ss_pred HHHHHHHHHHc
Confidence 67778887765
No 223
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.87 Score=32.58 Aligned_cols=28 Identities=11% Similarity=0.395 Sum_probs=20.8
Q ss_pred CeEEEEEecCCChHHHhhhHHHHHHHHH
Q psy12669 45 DFVLILFYVKWCRFSVAMLPTFDEVLVT 72 (157)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~ 72 (157)
+.+++.|....|++|++..+.+.+....
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~ 112 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYID 112 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhh
Confidence 5688888888899997777777664333
No 224
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.65 E-value=0.42 Score=28.74 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=55.1
Q ss_pred eEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeecccc
Q psy12669 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRER 125 (157)
Q Consensus 46 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~ 125 (157)
.++=.|.+..-+.+++....+.++-+..- .+...+-.+|..+++++++.++|-..||++---+ .+.. +..|..
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l-----~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P-~P~r-riiGdl 76 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEF-----QGVYALKVIDVLKNPQLAEEDKILATPTLSKILP-PPVR-KIIGDL 76 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhc-----CCceEEEEEEcccCHhHHhHCCEEEecHHhhcCC-CCcc-eeeccc
Confidence 45556777777888888877777755442 4668999999999999999999999999755433 2444 567765
Q ss_pred C
Q psy12669 126 T 126 (157)
Q Consensus 126 ~ 126 (157)
+
T Consensus 77 s 77 (87)
T TIGR02654 77 S 77 (87)
T ss_pred c
Confidence 4
No 225
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.50 E-value=0.42 Score=29.64 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=57.1
Q ss_pred CeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccc
Q psy12669 45 DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRE 124 (157)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~ 124 (157)
..++=.|.+..-+.+++....+.++-+... .+...+-.+|..+++++++.++|-..||++---+ .+.. +..|.
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l-----~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P-~P~r-riiGD 78 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEF-----KGVYALKVIDVLKNPQLAEEDKILATPTLAKILP-PPVR-KIIGD 78 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhc-----CCceEEEEEEcccCHhHHhHCCeEEecHHhhcCC-CCcc-eeecc
Confidence 456667888888888888888877755442 4668999999999999999999999999754432 3444 67787
Q ss_pred cC
Q psy12669 125 RT 126 (157)
Q Consensus 125 ~~ 126 (157)
.+
T Consensus 79 ls 80 (103)
T PRK09301 79 LS 80 (103)
T ss_pred cc
Confidence 54
No 226
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.46 Score=31.95 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=58.3
Q ss_pred cCCeEEEEEec-CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC---------------------ChhhHhhC
Q psy12669 43 NYDFVLILFYV-KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD---------------------YESVCEDY 100 (157)
Q Consensus 43 ~~~~~lv~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~~~~~~ 100 (157)
.++.++++||- .+++.|-...-.|.....++++. +..++.|-.|. +.++++.|
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-----~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~y 103 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-----GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAY 103 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-----CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHh
Confidence 46678888875 67899999999999999998755 35555555442 34677778
Q ss_pred CCCC------------CCeEEEEec-Cccceeeecc---ccCHHHHHHHHHHH
Q psy12669 101 NIVK------------YPTVKIMRH-GSIEKLEYRR---ERTVEALVKYVREE 137 (157)
Q Consensus 101 ~i~~------------~P~~~~~~~-g~~~~~~~~g---~~~~~~l~~~l~~~ 137 (157)
++-. .++.+++.. |.... .+.. ...++.+.+++.+.
T Consensus 104 gv~~~k~~~gk~~~~~~R~TfvId~dG~I~~-~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 104 GVWGEKKMYGKEYMGIERSTFVIDPDGKIRY-VWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred CcccccccCccccccccceEEEECCCCeEEE-EecCCCCcccHHHHHHHHHHh
Confidence 7632 467777764 55443 3432 24456666666553
No 227
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.01 E-value=0.38 Score=27.32 Aligned_cols=57 Identities=9% Similarity=0.226 Sum_probs=34.6
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-ChhhHhhCCCCCCCeEEEEecCcc
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-YESVCEDYNIVKYPTVKIMRHGSI 116 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~i~~~P~~~~~~~g~~ 116 (157)
+.|+.+||++|.+.+-.+..... .+....+|... .+++.+......+|++. ..+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----------~~e~~~v~~~~~~~~~~~~np~~~vP~L~-~~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----------TVELREVELKNKPAEMLAASPKGTVPVLV-LGNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE-ECCCcE
Confidence 45788999999988755544332 24455555543 34555555667899884 333543
No 228
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=92.40 E-value=2.1 Score=28.10 Aligned_cols=91 Identities=10% Similarity=0.152 Sum_probs=59.9
Q ss_pred hccCCeEEEEEecCCChHHHhhhHHH---HHHHHHHHhcCCCCCceEEEEEeCCCCh------------------hhHhh
Q psy12669 41 RDNYDFVLILFYVKWCRFSVAMLPTF---DEVLVTLINLLPEPRKFAITKINCDDYE------------------SVCED 99 (157)
Q Consensus 41 ~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------~~~~~ 99 (157)
.++.|+.+|+.+++.-..+..+-... +.+..-+ .+++.+-.-|++... ...+.
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl------~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~ 91 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYL------SQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRN 91 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHH------HcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHh
Confidence 44578999999999875444433322 3333344 235777777776643 13455
Q ss_pred CCCCCCCeEEEEe-c-C--ccceeeeccccCHHHHHHHHHHHc
Q psy12669 100 YNIVKYPTVKIMR-H-G--SIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 100 ~~i~~~P~~~~~~-~-g--~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
++...+|.+.+.. . + ..+. +..|..+++++..-+...+
T Consensus 92 ~~~~~fP~~avI~~~~~~~~vl~-~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 92 IKTDQLPAILIIMGKRSSNEVLN-VIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred cCcCCCCeEEEEEecCCceEEEE-EEECCCCHHHHHHHHHHHH
Confidence 7899999998874 2 2 2334 7899999999998887654
No 229
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.29 E-value=0.58 Score=26.48 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=27.5
Q ss_pred EEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEE
Q psy12669 50 LFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVK 109 (157)
Q Consensus 50 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 109 (157)
.++.++|++|++.+-.+....-. +....++........+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~----------~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP----------VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC----------eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 57788999999887655544322 223334433222222333445688773
No 230
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=91.81 E-value=3.2 Score=30.18 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=26.2
Q ss_pred hhccCCeEEEEEecCCChHHHhhhHHHHHHHHHH
Q psy12669 40 VRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTL 73 (157)
Q Consensus 40 ~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~ 73 (157)
...++|+.+++..+.|||.|...+=.+..+-..+
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf 87 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRF 87 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhc
Confidence 4467899999999999999998875554444454
No 231
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.4 Score=27.91 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=37.4
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC--------------h--hhHhhCCCCCCCeEEEEe
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY--------------E--SVCEDYNIVKYPTVKIMR 112 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------~--~~~~~~~i~~~P~~~~~~ 112 (157)
+.|++.-||.|..+...++++.-+| -.|++..+ + +-++..+--++|++ +..
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y------------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPal-l~~ 71 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY------------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPAL-LTD 71 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc------------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEE-EeC
Confidence 6799999999999988877765443 33444332 1 22455677789987 456
Q ss_pred cCccc
Q psy12669 113 HGSIE 117 (157)
Q Consensus 113 ~g~~~ 117 (157)
+|+.+
T Consensus 72 d~~vV 76 (85)
T COG4545 72 DGKVV 76 (85)
T ss_pred CCcEE
Confidence 66655
No 232
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.47 E-value=0.44 Score=27.60 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=39.0
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC----hhhHhhCCCCCCCeEEEEecCccceeeeccc
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY----ESVCEDYNIVKYPTVKIMRHGSIEKLEYRRE 124 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~ 124 (157)
..++.++|++|.+.+-.+.... +.+-.++++.. +++.+.-+-..+|+++.-.+|. . .
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g------------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~-~------l 63 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE------------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGV-Q------M 63 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC------------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCe-E------E
Confidence 4577789999998775554433 33444455432 2333333456789874322232 2 2
Q ss_pred cCHHHHHHHHHHH
Q psy12669 125 RTVEALVKYVREE 137 (157)
Q Consensus 125 ~~~~~l~~~l~~~ 137 (157)
.+...|.+|+.+.
T Consensus 64 ~es~~I~~yL~~~ 76 (77)
T cd03041 64 FESADIVKYLFKT 76 (77)
T ss_pred EcHHHHHHHHHHh
Confidence 4456777777653
No 233
>KOG2792|consensus
Probab=91.35 E-value=2.8 Score=30.54 Aligned_cols=96 Identities=13% Similarity=0.175 Sum_probs=61.4
Q ss_pred cCCeEEEEEecCCCh-HHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC--------------------------hh
Q psy12669 43 NYDFVLILFYVKWCR-FSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY--------------------------ES 95 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~-~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------------------~~ 95 (157)
.++-++++|--+.|| -|-.....+.++.+.+.+...-...-.|+.+|-..+ ++
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 466789999888886 477777777777776655431111236888887543 25
Q ss_pred hHhhCCCCCCC-------------eEEEE---ecCccceeeeccc-cCHHHHHHHHHHHcCC
Q psy12669 96 VCEDYNIVKYP-------------TVKIM---RHGSIEKLEYRRE-RTVEALVKYVREELMD 140 (157)
Q Consensus 96 ~~~~~~i~~~P-------------~~~~~---~~g~~~~~~~~g~-~~~~~l~~~l~~~~~~ 140 (157)
+|++|.|..-+ ++++| ++|+.+. |.|. .+++++.+-|.+.+.+
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd--~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVD--YYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceeh--hhcccCCHHHHHHHHHHHHHh
Confidence 56666553211 34455 4666665 6665 8899999998887654
No 234
>PHA03075 glutaredoxin-like protein; Provisional
Probab=91.07 E-value=0.47 Score=30.04 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.9
Q ss_pred CeEEEEEecCCChHHHhhhHHHHHHHHHH
Q psy12669 45 DFVLILFYVKWCRFSVAMLPTFDEVLVTL 73 (157)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~ 73 (157)
+.+++.|..|.|+-|+.....+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 46899999999999999999987776665
No 235
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=3.4 Score=27.72 Aligned_cols=105 Identities=15% Similarity=0.349 Sum_probs=64.8
Q ss_pred ceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-----------hhh
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-----------ESV 96 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~~ 96 (157)
.+..++.+.+.-.--+++.++|-=.|+-|+.-- ....++.+.+.|++. .+.+...-|+.. .++
T Consensus 9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~-----Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK-----GFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred eeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC-----CcEEEeccccccccCCCCCHHHHHHH
Confidence 344455544443334788888888999998766 445677888888744 477777777642 122
Q ss_pred Hh-hCCCCC------------------------------------CCeEEEEecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 97 CE-DYNIVK------------------------------------YPTVKIMRHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 97 ~~-~~~i~~------------------------------------~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
|+ .|+++- +=-+++=++|+.+. ||.-..+++++...|++.+.
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~-Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVK-RFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEE-eeCCCCChhhHHHHHHHHhc
Confidence 32 122210 11222225777887 88888888888888777654
No 236
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=90.77 E-value=4.4 Score=28.55 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=60.5
Q ss_pred cHHHhhccCCeEEEEEecCCCh-HHHhhhHHHHHHHHHHHhcCCCCCce--EEEEEeCCCC-------------------
Q psy12669 36 NVDYVRDNYDFVLILFYVKWCR-FSVAMLPTFDEVLVTLINLLPEPRKF--AITKINCDDY------------------- 93 (157)
Q Consensus 36 ~~~~~~~~~~~~lv~f~~~~C~-~C~~~~~~~~~~~~~~~~~~~~~~~v--~~~~vd~~~~------------------- 93 (157)
.+...--++++++|.|.=..|+ -|-.....+..+.+.+.+.. ..++ .++.+|-+.+
T Consensus 59 ~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~--~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ 136 (207)
T COG1999 59 PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE--GDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIG 136 (207)
T ss_pred EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc--CCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeee
Confidence 3433333788999998766674 58888888888887775322 3444 4455554432
Q ss_pred --------hhhHhhCCCCC---------------CCeEEEEe-cCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 94 --------ESVCEDYNIVK---------------YPTVKIMR-HGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 94 --------~~~~~~~~i~~---------------~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+++++.|++.. -..++++. +|+... .|.+...++.+.+.++..+.
T Consensus 137 ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~-~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 137 LTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG-TYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred eeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE-EecCCCChHHHHHHHHHHhh
Confidence 13334444331 22334443 666666 66666668888888877654
No 237
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=90.45 E-value=5.4 Score=29.10 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=68.7
Q ss_pred CCceeecCcccHHHhhccCCeEEEEEecCC-ChH-HHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh----
Q psy12669 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKW-CRF-SVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED---- 99 (157)
Q Consensus 26 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~-C~~-C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~---- 99 (157)
.+...+|++.+-+-+-.=++++-|.+|.+- =+. -....+.+..+-+.|+... .+++.+-.+|.+.+++.+++
T Consensus 6 ~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s--~g~i~v~~iDp~~~~~~~~~~~~~ 83 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYS--PGKIKVEFIDPDENPSEAEEKAKE 83 (271)
T ss_pred CCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhC--CCceEEEEECCCCChHHHHHHHHh
Confidence 456677777776655444456555555543 222 4556667777777777665 55899999999777766655
Q ss_pred CCCCC----------------CCeEEEEecCccceeeecc----ccCHHHHHHHHHHHcCC
Q psy12669 100 YNIVK----------------YPTVKIMRHGSIEKLEYRR----ERTVEALVKYVREELMD 140 (157)
Q Consensus 100 ~~i~~----------------~P~~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~~~~ 140 (157)
+||.. ++.+++-..++...+.+.. ...+..|...|.+....
T Consensus 84 ~Gi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~ 144 (271)
T PF09822_consen 84 YGIQPVQIEIVDNGKASIVTVYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTSD 144 (271)
T ss_pred cCCCccceeecccccccceeecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhcc
Confidence 77766 5555554444333223332 23466777777776554
No 238
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=90.26 E-value=0.86 Score=29.64 Aligned_cols=46 Identities=7% Similarity=0.099 Sum_probs=34.5
Q ss_pred CChhhHhhCCCCCCCeEEEEecCc-----------cceeeeccccCHHHHHHHHHHHc
Q psy12669 92 DYESVCEDYNIVKYPTVKIMRHGS-----------IEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 92 ~~~~~~~~~~i~~~P~~~~~~~g~-----------~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
=++.+.++|+|+.+|++++.+++. ... ...|..+.+.-.+.+.+.-
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d-~v~Gdvsl~~ALe~ia~~g 115 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYD-VVYGNVSLKGALEKMAQDG 115 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCee-EEEecccHHHHHHHHHHhC
Confidence 348999999999999999998774 223 5678777776666666543
No 239
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.00 E-value=2.1 Score=28.10 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=49.9
Q ss_pred EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCC--CeEEEEecCccceeeeccc
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY--PTVKIMRHGSIEKLEYRRE 124 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~--P~~~~~~~g~~~~~~~~g~ 124 (157)
-++.+++|.|+=|..+...++ . +.+.+-.+..++-..+-++++|..- .+--..-+|.. ..|-
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk----~--------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~----vEGH 90 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK----A--------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYY----VEGH 90 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH----h--------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEE----Eecc
Confidence 467799999999998876554 1 3477777777777777778887631 22112224432 3466
Q ss_pred cCHHHHHHHHHHHc
Q psy12669 125 RTVEALVKYVREEL 138 (157)
Q Consensus 125 ~~~~~l~~~l~~~~ 138 (157)
..+++|..++.+.-
T Consensus 91 VPa~aI~~ll~~~p 104 (149)
T COG3019 91 VPAEAIARLLAEKP 104 (149)
T ss_pred CCHHHHHHHHhCCC
Confidence 67788888877643
No 240
>KOG2507|consensus
Probab=89.66 E-value=5.8 Score=31.04 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=61.2
Q ss_pred ccCCeEEEEEecCCChHHHhhh-HHHHHH--HHHHHhcCCCCCceEEEEEeCCC--ChhhHhhCCCCCCCeEEEEe-cCc
Q psy12669 42 DNYDFVLILFYVKWCRFSVAML-PTFDEV--LVTLINLLPEPRKFAITKINCDD--YESVCEDYNIVKYPTVKIMR-HGS 115 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~-~~~~~~--~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~-~g~ 115 (157)
+.++.++|.|-+-.-....++. -.|..- ...+ ...+..++|+... .-.+..-|.+..+|++++.. .|.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l------s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGt 89 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL------SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGT 89 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh------hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCc
Confidence 4566677777776666666666 234332 2222 2345566666553 34566778999999999996 888
Q ss_pred cceeeeccccCHHHHHHHHHHHc
Q psy12669 116 IEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 116 ~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
++. ...|...+++|..-|.+..
T Consensus 90 pLe-vitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 90 PLE-VITGFVTADELASSIEKVW 111 (506)
T ss_pred eeE-EeeccccHHHHHHHHHHHH
Confidence 888 7899999999988887764
No 241
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.53 E-value=0.39 Score=29.72 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=43.3
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh----hhHhhCCCCCCCeEEEEe-cCccce---ee
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE----SVCEDYNIVKYPTVKIMR-HGSIEK---LE 120 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~i~~~P~~~~~~-~g~~~~---~~ 120 (157)
..|+.++|+.|++....+++. ++.+-.+|..+.+ ++.+-.+-.+.+.--+++ +|.... ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCc
Confidence 568999999999997655542 3556666766532 333333333333333443 222221 01
Q ss_pred eccccCHHHHHHHHHHH
Q psy12669 121 YRRERTVEALVKYVREE 137 (157)
Q Consensus 121 ~~g~~~~~~l~~~l~~~ 137 (157)
-....+.+++.+++.+.
T Consensus 70 ~~~~ls~~e~~~~l~~~ 86 (105)
T cd02977 70 DKDELSDEEALELMAEH 86 (105)
T ss_pred cccCCCHHHHHHHHHhC
Confidence 12346778888888775
No 242
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=88.82 E-value=0.85 Score=24.89 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=30.7
Q ss_pred EEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh--hhHhhCCCCCCCeEEE
Q psy12669 50 LFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE--SVCEDYNIVKYPTVKI 110 (157)
Q Consensus 50 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~i~~~P~~~~ 110 (157)
.|+.++|+.|.+..-.+...... +....++..... ++-+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~----------~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP----------YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC----------cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57788999999887666555322 334444443322 2344456678897743
No 243
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=88.69 E-value=1.4 Score=24.81 Aligned_cols=52 Identities=6% Similarity=0.001 Sum_probs=32.2
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC----CChhhHhhCCCCCCCeEEE
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD----DYESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~P~~~~ 110 (157)
..|+.++|++|++.+-.+....-. .....++.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357888999999998776555332 333444432 2334555555668898854
No 244
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=88.15 E-value=5.2 Score=27.23 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=40.2
Q ss_pred eecCcccHHHhhccCCeEEEEEecCCC-hHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q psy12669 30 IELDTDNVDYVRDNYDFVLILFYVKWC-RFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD 91 (157)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~lv~f~~~~C-~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~ 91 (157)
..-+.+.+...--.+++++|.|.-..| ..|-.....+.++.+.+.+. ..++.++.|.+|
T Consensus 38 ~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~---~~~v~~v~ISvD 97 (174)
T PF02630_consen 38 TDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE---GKDVQFVFISVD 97 (174)
T ss_dssp EETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT---TTTEEEEEEESS
T ss_pred EcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc---cCceEEEEEEeC
Confidence 333444444333368899999888888 67999999999998888765 245666666665
No 245
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.14 E-value=2.7 Score=25.98 Aligned_cols=71 Identities=11% Similarity=0.202 Sum_probs=43.4
Q ss_pred cHHHhhccCCeEEEEEe---cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCC-CCCCCeE-EE
Q psy12669 36 NVDYVRDNYDFVLILFY---VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYN-IVKYPTV-KI 110 (157)
Q Consensus 36 ~~~~~~~~~~~~lv~f~---~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~-i~~~P~~-~~ 110 (157)
-+++.+++++.++-.=- .|.|+.+.+....+... +.+.|..+|+-.++++.+.+. ...+||+ -+
T Consensus 7 ~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~-----------g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQL 75 (105)
T COG0278 7 RIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC-----------GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQL 75 (105)
T ss_pred HHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc-----------CCcceeEEeeccCHHHHhccHhhcCCCCCcee
Confidence 34556655554332223 35677776665444322 227799999999988877554 4567776 56
Q ss_pred EecCccc
Q psy12669 111 MRHGSIE 117 (157)
Q Consensus 111 ~~~g~~~ 117 (157)
|-+|+.+
T Consensus 76 yi~GEfv 82 (105)
T COG0278 76 YVNGEFV 82 (105)
T ss_pred eECCEEe
Confidence 6677655
No 246
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=88.10 E-value=0.28 Score=29.23 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=42.5
Q ss_pred EecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEE
Q psy12669 51 FYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIM 111 (157)
Q Consensus 51 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 111 (157)
|-+..-+.+......+..+.+... .+++.+-.+|..+++++++.++|-..||++--
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l-----~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~ 58 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYL-----GGRYELEVIDVLEQPELAEEDRIVATPTLIKE 58 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHC-----TTTEEEEEEETTTSHSHHTTTEEECHHHHHTT
T ss_pred EECCCChHHHHHHHHHHHHHHhhC-----CCcEEEEEEEcccCHhHHhHCCeeecceEeec
Confidence 344444566666667776665532 57899999999999999999999999997543
No 247
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=88.09 E-value=0.99 Score=25.46 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=39.7
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-ChhhHhhCCCCCCCeEEEEecCccceeeeccccCH
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-YESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTV 127 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~ 127 (157)
..|+.++|+.|++..-.+....-. .....+|... .+++.+......+|++. .+|.. ..+.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----------~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~-------l~es 62 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----------VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV-------LYES 62 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----------cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE-------EEcH
Confidence 467889999999998666544333 2333344433 23445545566889764 33322 1345
Q ss_pred HHHHHHHHH
Q psy12669 128 EALVKYVRE 136 (157)
Q Consensus 128 ~~l~~~l~~ 136 (157)
..|..|+.+
T Consensus 63 ~aI~~yL~~ 71 (73)
T cd03059 63 RIIMEYLDE 71 (73)
T ss_pred HHHHHHHHh
Confidence 566666654
No 248
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.42 E-value=0.67 Score=28.89 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=23.6
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY 93 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 93 (157)
..|+.|+|+.|++....+++- ++.+-.+|..+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------------CCCeEEEecccC
Confidence 568999999999987555432 356666777655
No 249
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.30 E-value=1.6 Score=31.16 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=34.3
Q ss_pred hhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHHHHcCCCcee
Q psy12669 95 SVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIE 144 (157)
Q Consensus 95 ~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 144 (157)
..+++++|+++|++++ +| .. ...|...++.+..-|.+.+......
T Consensus 175 ~~A~e~gI~gVP~fv~--d~-~~--~V~Gaq~~~v~~~al~~~~~~~~~~ 219 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DG-KY--AVSGAQPYDVLEDALRQLLAEKAEE 219 (225)
T ss_pred HHHHHCCCccCceEEE--cC-cE--eecCCCCHHHHHHHHHHHHhccccc
Confidence 3456799999999987 22 22 3689999999999999998765433
No 250
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=4.5 Score=31.20 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=68.5
Q ss_pred ceeecCcccHHHhhc-cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCC
Q psy12669 28 QVIELDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 106 (157)
....++++-++++.+ .+..-+=.|++-.|.+|-..-..+.-.+.- ..++....+|..-..+-.+.-+|..+|
T Consensus 99 ~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvl-------Np~I~H~~IdGa~Fq~Evear~IMaVP 171 (520)
T COG3634 99 HPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVL-------NPRIKHTAIDGALFQDEVEARNIMAVP 171 (520)
T ss_pred CCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhc-------CCCceeEEecchhhHhHHHhccceecc
Confidence 334456666666543 566778889999999998887777766654 468999999987665556666999999
Q ss_pred eEEEEecCccceeeeccccCHHHHHHHHHH
Q psy12669 107 TVKIMRHGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 107 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
|++ -+|+.. -.|..+.++|..-+..
T Consensus 172 tvf--lnGe~f---g~GRmtleeilaki~~ 196 (520)
T COG3634 172 TVF--LNGEEF---GQGRMTLEEILAKIDT 196 (520)
T ss_pred eEE--Ecchhh---cccceeHHHHHHHhcC
Confidence 974 456544 3677777777766654
No 251
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=86.67 E-value=0.78 Score=28.83 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=42.7
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh----hhHhhCCCCCCCeEEEEe-cCccce-eeec
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE----SVCEDYNIVKYPTVKIMR-HGSIEK-LEYR 122 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~i~~~P~~~~~~-~g~~~~-~~~~ 122 (157)
..|+.++|+.|++...-+++ .++.|-.+|..+++ ++.+-++-.+.|..-+++ +|.... ....
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLK 69 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcc
Confidence 46899999999998865543 23667777776543 222223333455555554 332221 0011
Q ss_pred c---ccCHHHHHHHHHHH
Q psy12669 123 R---ERTVEALVKYVREE 137 (157)
Q Consensus 123 g---~~~~~~l~~~l~~~ 137 (157)
+ ..+.+++.+.+.+.
T Consensus 70 ~~~~~~s~~e~~~~l~~~ 87 (111)
T cd03036 70 DKLPSLSEEEALELLSSD 87 (111)
T ss_pred cccccCCHHHHHHHHHhC
Confidence 1 23556777777764
No 252
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=86.39 E-value=1 Score=29.29 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=23.7
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE 94 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 94 (157)
+..|+.++|+.|++....+++ .++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~------------~gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE------------HDIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH------------cCCCcEEeeccCCh
Confidence 456899999999997754433 23556666765543
No 253
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=85.44 E-value=4.3 Score=25.62 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEec
Q psy12669 61 AMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRH 113 (157)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 113 (157)
.+.+.+..+.+...+.. . . .++.=++.+.++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~---~-~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDD---P-C----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccC---C-C----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 66777776666654331 1 1 33334489999999999999999887
No 254
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=84.26 E-value=2.8 Score=23.64 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=31.5
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC----ChhhHhhCCCCCCCeEE
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD----YESVCEDYNIVKYPTVK 109 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~P~~~ 109 (157)
..|+.++|++|++..-.+....-. +....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~----------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE----------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC----------CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 358889999999777655544322 3444455432 24555555566889985
No 255
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=83.28 E-value=1.3 Score=28.00 Aligned_cols=34 Identities=6% Similarity=0.008 Sum_probs=24.9
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE 94 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 94 (157)
..|+.++|+.|++....+++ .++.+-.+|..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------------cCCceEEEecCCCh
Confidence 36899999999999866654 13567777776654
No 256
>KOG0912|consensus
Probab=83.12 E-value=8.8 Score=28.89 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=63.0
Q ss_pred ceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHH-HHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCC--CCC
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTF-DEVLVTLINLLPEPRKFAITKINCDDYESVCEDYN--IVK 104 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~-~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~--i~~ 104 (157)
-|.++|-+|.++...++.|.+++|+.+.-.... ..+ ..+++++-+. ...+.+...|+..-.--.+.+| -..
T Consensus 211 LVREiTFeN~EELtEEGlPflILf~~kdD~~s~---k~F~~aI~ReL~~e---~~~in~l~ADG~~f~hpL~HlgKs~~D 284 (375)
T KOG0912|consen 211 LVREITFENAEELTEEGLPFLILFRKKDDKESE---KIFKNAIARELDDE---TLAINFLTADGKVFKHPLRHLGKSPDD 284 (375)
T ss_pred hhhhhhhccHHHHhhcCCceEEEEecCCcccHH---HHHHHHHHHHhhhh---hhccceeecCcceecchHHHhCCCccc
Confidence 467788888888888999999999998754432 333 3345555333 3458888888886544344444 234
Q ss_pred CCeEEEEe--cCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 105 YPTVKIMR--HGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 105 ~P~~~~~~--~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
.|.+.+=. .--.-+ .+.....+..|.+|+.+...
T Consensus 285 LPviaIDsF~Hmylfp-~f~di~~pGkLkqFv~DL~s 320 (375)
T KOG0912|consen 285 LPVIAIDSFRHMYLFP-DFNDINIPGKLKQFVADLHS 320 (375)
T ss_pred CcEEEeeccceeeecC-chhhhcCccHHHHHHHHHhC
Confidence 56553311 111112 23444555688888877543
No 257
>PRK12559 transcriptional regulator Spx; Provisional
Probab=82.55 E-value=1.9 Score=28.04 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=22.8
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY 93 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 93 (157)
+..|+.++|+.|++...-+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------------CCCeEEEEeeCC
Confidence 4578999999999977544332 355566666544
No 258
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=82.46 E-value=1.9 Score=27.15 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=40.3
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh----hhHhhCCCCCCCeEEEEe-cCccceeee--
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE----SVCEDYNIVKYPTVKIMR-HGSIEKLEY-- 121 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~i~~~P~~~~~~-~g~~~~~~~-- 121 (157)
..|+.++|+.|++....+++. ++.+-.+|..+++ ++.+-+.-.+.|.--+++ +|.... ..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~------------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k-~l~~ 69 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH------------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFK-NLNI 69 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHH-HcCC
Confidence 468889999999988665542 3556666665542 222222222234333444 333221 11
Q ss_pred -ccccCHHHHHHHHHHH
Q psy12669 122 -RRERTVEALVKYVREE 137 (157)
Q Consensus 122 -~g~~~~~~l~~~l~~~ 137 (157)
....+.+++.+.+.+.
T Consensus 70 ~~~~ls~~e~i~~l~~~ 86 (115)
T cd03032 70 DIDELSLSELIRLISEH 86 (115)
T ss_pred CcccCCHHHHHHHHHhC
Confidence 1235556777777663
No 259
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=82.31 E-value=5.2 Score=28.73 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=41.8
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY 93 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 93 (157)
.+..++|-+-..+|..|......++.+..++.+.+ -.+|.|..||--..
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g--~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEG--LSNISFMVVNHQGE 73 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCC--CCceEEEEEcCCCc
Confidence 46778888888899999999999999999987776 57899999997643
No 260
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=82.05 E-value=5.4 Score=23.68 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=32.6
Q ss_pred EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-hhhHhhCCCCCCCeEEE
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-ESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~~P~~~~ 110 (157)
.+..|+.+.|++|++..-.+....- .+....++.... +++.+......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl----------~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI----------PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC----------CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 3555778889999987655544332 244445554433 33555555678898853
No 261
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=81.08 E-value=9.4 Score=23.96 Aligned_cols=58 Identities=14% Similarity=0.309 Sum_probs=42.1
Q ss_pred eecCcccHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC
Q psy12669 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY 93 (157)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 93 (157)
..++.+.++--.-+++++||.=.|+.|+.-. ....+.++.+.+++. .+.+...-|+..
T Consensus 7 ~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-----gl~ILaFPcnqF 64 (108)
T PF00255_consen 7 KDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-----GLEILAFPCNQF 64 (108)
T ss_dssp EBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-----TEEEEEEEBSTT
T ss_pred eCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-----CeEEEeeehHHh
Confidence 3444444433223678888888899999988 777999999999643 588888888753
No 262
>KOG1422|consensus
Probab=80.05 E-value=19 Score=25.58 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=45.5
Q ss_pred CChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCC-CCCeEEEEecCccceeeeccccCHHHHHHH
Q psy12669 55 WCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIV-KYPTVKIMRHGSIEKLEYRRERTVEALVKY 133 (157)
Q Consensus 55 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~-~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~ 133 (157)
.|+.|+++.-.+. .. .-.+.+-.||..+.++-..+..-. ..| ++.|.. .+..+.+.|.++
T Consensus 20 dcpf~qr~~m~L~---~k-------~~~f~vttVd~~~kp~~f~~~sp~~~~P-~l~~d~--------~~~tDs~~Ie~~ 80 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LK-------GVPFKVTTVDLSRKPEWFLDISPGGKPP-VLKFDE--------KWVTDSDKIEEF 80 (221)
T ss_pred CChhHHHHHHHHH---Hc-------CCCceEEEeecCCCcHHHHhhCCCCCCC-eEEeCC--------ceeccHHHHHHH
Confidence 4888888877766 22 235788899999888777654433 344 333332 223667889999
Q ss_pred HHHHcCCC
Q psy12669 134 VREELMDP 141 (157)
Q Consensus 134 l~~~~~~~ 141 (157)
|++.++++
T Consensus 81 Lee~l~~p 88 (221)
T KOG1422|consen 81 LEEKLPPP 88 (221)
T ss_pred HHHhcCCC
Confidence 99988864
No 263
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.66 E-value=4.6 Score=28.26 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=33.7
Q ss_pred hhhHhhCCCCCCCeEEEEecCccceeeecc--ccCHHHHHHHHHHHcC
Q psy12669 94 ESVCEDYNIVKYPTVKIMRHGSIEKLEYRR--ERTVEALVKYVREELM 139 (157)
Q Consensus 94 ~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g--~~~~~~l~~~l~~~~~ 139 (157)
..+++++++.++||+.+-.+|+... --.| ..+.+.+..++.+.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~-l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYV-LGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEe-ccCCcccCCcHHHHHHHHHHHh
Confidence 3567889999999999999998765 2344 3566888888877653
No 264
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=78.60 E-value=35 Score=27.91 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=51.5
Q ss_pred CCCCceeecCcccHHHhhccCCeEEEEEecC-CCh-HHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhh-----
Q psy12669 24 VNNSQVIELDTDNVDYVRDNYDFVLILFYVK-WCR-FSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESV----- 96 (157)
Q Consensus 24 ~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~-~C~-~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----- 96 (157)
...+...+|++.+-+-+-+=++++-|.+|.+ .-+ .-+.....+.++-++|+... +++.+-.+|-..+++.
T Consensus 27 lT~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s---~~i~~~~iDP~~~~~~e~~~~ 103 (552)
T TIGR03521 27 LTEDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYN---PNIKFRFVNPLEEEDEQGEEI 103 (552)
T ss_pred cCCCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhC---CCeEEEEeCCCCcchhhhhHH
Confidence 3467888999887776554456655555443 322 33455667777777776663 4599999998876432
Q ss_pred ---HhhCCCCCCC
Q psy12669 97 ---CEDYNIVKYP 106 (157)
Q Consensus 97 ---~~~~~i~~~P 106 (157)
+.++||...+
T Consensus 104 ~~~~~~~gi~~~~ 116 (552)
T TIGR03521 104 LDSLAQYGIKPAN 116 (552)
T ss_pred HHHHHHcCCCcce
Confidence 3347877655
No 265
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=78.13 E-value=13 Score=22.69 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=43.5
Q ss_pred CChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 55 WCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 55 ~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
-|+.+- .+.++.+.+.+.+.. .+++.+....|-.-. +.-|++++|+++.- ...|..+++++...+
T Consensus 15 ~C~~~g--~~l~~~l~~~l~~~~--~~~v~v~~~~clG~c--------~~gp~vvvyP~~~g---~wy~~v~p~~v~~Iv 79 (97)
T cd03062 15 RCGICG--PPLAAELRAELPEHG--PGGVRVWEVSHVGGH--------KFAGNVIIYPKGDG---IWYGRVTPEHVPPIV 79 (97)
T ss_pred ChhhcC--HHHHHHHHHHHHHhC--CCceEEEeCCcCCcc--------CcCCEEEEEeCCCe---eEEeecCHHHHHHHH
Confidence 455543 356677777775443 234665555443322 33499999993222 345678888899999
Q ss_pred HHHcCC
Q psy12669 135 REELMD 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
.+.+..
T Consensus 80 ~~hl~~ 85 (97)
T cd03062 80 DRLILG 85 (97)
T ss_pred HHHhcC
Confidence 888764
No 266
>KOG4277|consensus
Probab=77.95 E-value=21 Score=26.93 Aligned_cols=92 Identities=17% Similarity=0.320 Sum_probs=52.4
Q ss_pred eeecCcc--cHHHhhccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh-CCCCCC
Q psy12669 29 VIELDTD--NVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED-YNIVKY 105 (157)
Q Consensus 29 v~~l~~~--~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~-~~i~~~ 105 (157)
+..++.+ .|.....++++.+|+|.+.. -|.+++...... ..+.+.+.= +...+++-. -..+..
T Consensus 136 I~pi~enQ~~fehlq~Rhq~ffVf~Gtge-------~PL~d~fidAAS------e~~~~a~Ff-SaseeVaPe~~~~kem 201 (468)
T KOG4277|consen 136 IEPINENQIEFEHLQARHQPFFVFFGTGE-------GPLFDAFIDAAS------EKFSVARFF-SASEEVAPEENDAKEM 201 (468)
T ss_pred eeecChhHHHHHHHhhccCceEEEEeCCC-------CcHHHHHHHHhh------hheeeeeee-ccccccCCcccchhhc
Confidence 4455543 34556688999999888653 234444433321 123333322 222334333 346678
Q ss_pred CeEEEEecCccceeeeccccCHHHHHHHHHHH
Q psy12669 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
|.+.+|++..... .. ..+-+++..|+++.
T Consensus 202 paV~VFKDetf~i-~d--e~dd~dLseWinRE 230 (468)
T KOG4277|consen 202 PAVAVFKDETFEI-ED--EGDDEDLSEWINRE 230 (468)
T ss_pred cceEEEccceeEE-Ee--cCchhHHHHHHhHh
Confidence 9999999764332 22 34567889999875
No 267
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=77.77 E-value=3.3 Score=26.96 Aligned_cols=34 Identities=6% Similarity=0.151 Sum_probs=22.8
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY 93 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 93 (157)
+..|+.++|+.|++...-+++ .++.+-.+|..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------------~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA------------HQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------------cCCCeEEEECCCC
Confidence 346888999999997644332 2466666676654
No 268
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=74.35 E-value=8 Score=29.37 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=57.1
Q ss_pred ChHHHhhhHHHHHHHHHHHhcC-CCCCceEEEEEeCCCC-h--hhHhhCCCCC--CCeEEEEecCccceeeeccccCHHH
Q psy12669 56 CRFSVAMLPTFDEVLVTLINLL-PEPRKFAITKINCDDY-E--SVCEDYNIVK--YPTVKIMRHGSIEKLEYRRERTVEA 129 (157)
Q Consensus 56 C~~C~~~~~~~~~~~~~~~~~~-~~~~~v~~~~vd~~~~-~--~~~~~~~i~~--~P~~~~~~~g~~~~~~~~g~~~~~~ 129 (157)
||.|-+..-.+.+..+...+.. .....+.++.+.|--| + ..-..+++.+ -|...+|..|+.+. +..+..-.++
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~-~~~~~~~~ee 342 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIK-KLPEEDIVEE 342 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEE-ecChhhHHHH
Confidence 9999888877766655554332 1133477777777533 1 1123466653 69999999999998 7888888888
Q ss_pred HHHHHHHHcCC
Q psy12669 130 LVKYVREELMD 140 (157)
Q Consensus 130 l~~~l~~~~~~ 140 (157)
+...+.+....
T Consensus 343 l~~~i~~~~~~ 353 (361)
T COG0821 343 LEALIEAYAEE 353 (361)
T ss_pred HHHHHHHHHHH
Confidence 88888776543
No 269
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.07 E-value=4.9 Score=27.60 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=25.7
Q ss_pred hhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 95 SVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 95 ~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
+.+.+.||.++|++++ +|+. ...|..+.+.+.+.|
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~~---~~~G~~~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGKY---AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCeE---eecCCCCHHHHHHHh
Confidence 4556789999999877 4431 367888888887654
No 270
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=70.71 E-value=6.8 Score=24.74 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=22.9
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY 93 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 93 (157)
+..|+.|.|..|++...-+++ .++.+-.+|..+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~------------~gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA------------AGHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH------------cCCCcEEeehhcC
Confidence 356899999999987744432 2366666676554
No 271
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=70.37 E-value=8.6 Score=26.15 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=23.9
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHH
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTL 73 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~ 73 (157)
+.+|+.+.||.|-...+.+.++.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 56789999999999999999999887
No 272
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=69.82 E-value=7.3 Score=29.81 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=50.1
Q ss_pred ChHHHhhhHHHHHHHHHHHhcCCC-CCceEEEEEeCCCC-h-hh-HhhCCCC-C-CCeEEEEecCccceeee-ccccCHH
Q psy12669 56 CRFSVAMLPTFDEVLVTLINLLPE-PRKFAITKINCDDY-E-SV-CEDYNIV-K-YPTVKIMRHGSIEKLEY-RRERTVE 128 (157)
Q Consensus 56 C~~C~~~~~~~~~~~~~~~~~~~~-~~~v~~~~vd~~~~-~-~~-~~~~~i~-~-~P~~~~~~~g~~~~~~~-~g~~~~~ 128 (157)
||.|-+..-.+..+++++++.... +..+.++.+.|--| + +. -.++|+- + --...+|+.|+.+. +. ....-.+
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~-k~~~ee~~vd 349 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVK-KVIPEEEIVD 349 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEE-EE-CSTCHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEE-ecCCHHHHHH
Confidence 999988888888887777655321 34789999999755 2 21 1246665 3 33488999999998 66 6666677
Q ss_pred HHHHHHHHH
Q psy12669 129 ALVKYVREE 137 (157)
Q Consensus 129 ~l~~~l~~~ 137 (157)
.|.+.++++
T Consensus 350 ~L~~~I~~~ 358 (359)
T PF04551_consen 350 ELIELIEEH 358 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 787777664
No 273
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=69.40 E-value=23 Score=21.48 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=41.5
Q ss_pred cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh-CCCCCCCeEEEEecCccceeeeccccCHHHHH
Q psy12669 53 VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED-YNIVKYPTVKIMRHGSIEKLEYRRERTVEALV 131 (157)
Q Consensus 53 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~-~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~ 131 (157)
..+|++|++.+-.+.... -...+..+|..+.++...+ .....+|++. .+|..+ .+...|.
T Consensus 19 ~g~cpf~~rvrl~L~eKg----------i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i-------~eS~~I~ 79 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKG----------VVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK-------TDNNKIE 79 (91)
T ss_pred CCCChhHHHHHHHHHHCC----------CceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe-------cCHHHHH
Confidence 357999998876554432 2345566776654444444 4467899664 344322 4566788
Q ss_pred HHHHHHcCC
Q psy12669 132 KYVREELMD 140 (157)
Q Consensus 132 ~~l~~~~~~ 140 (157)
+++.+...+
T Consensus 80 eYLde~~~~ 88 (91)
T cd03061 80 EFLEETLCP 88 (91)
T ss_pred HHHHHHccC
Confidence 888876554
No 274
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=69.26 E-value=16 Score=20.22 Aligned_cols=52 Identities=4% Similarity=-0.038 Sum_probs=30.3
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC----CChhhHhhCCCCCCCeEEE
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD----DYESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~P~~~~ 110 (157)
..|+.+.|+.|.+.+-.+....-. .....+|.. +.+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP----------YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC----------cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 357888999999877555544322 334444432 2234444444567898853
No 275
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=67.56 E-value=26 Score=22.56 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhh----------HhhCCCCCCCeEEEEecCccceeeeccccCHHHHHH
Q psy12669 63 LPTFDEVLVTLINLLPEPRKFAITKINCDDYESV----------CEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVK 132 (157)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----------~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~ 132 (157)
.|.+-+++..++... +..+.+.+.|...++.. -++-|...+|.++ -+|+.+. .-.+.+-++|.+
T Consensus 23 d~eL~~~a~~~~~Lk--~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl--VdGeiv~--~G~YPt~eEl~~ 96 (123)
T PF06953_consen 23 DPELVRFAADLDWLK--EQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL--VDGEIVK--TGRYPTNEELAE 96 (123)
T ss_dssp -HHHHHHHHHHHHHH--HTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE--ETTEEEE--ESS---HHHHHH
T ss_pred CHHHHHHHHHHHHHH--hCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE--ECCEEEE--ecCCCCHHHHHH
Confidence 444444443333222 34699999999987532 2345888899654 3676664 455678899999
Q ss_pred HHHHHcCC
Q psy12669 133 YVREELMD 140 (157)
Q Consensus 133 ~l~~~~~~ 140 (157)
|+.-....
T Consensus 97 ~~~i~~~~ 104 (123)
T PF06953_consen 97 WLGISFSE 104 (123)
T ss_dssp HHT--GGG
T ss_pred HhCCCccc
Confidence 98665443
No 276
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=67.28 E-value=8.3 Score=26.17 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=23.9
Q ss_pred hhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHH
Q psy12669 95 SVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 95 ~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l 134 (157)
+.+.++||.++|++++ +|+ .+.|....+.+...+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~----~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE----MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe----eecccccHHHHHHHh
Confidence 4456789999999977 453 356777777666554
No 277
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=65.96 E-value=18 Score=25.57 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=29.5
Q ss_pred ChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHHH
Q psy12669 93 YESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 93 ~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
++.+.++|+|..+|++++.-. .... ...|..+.+.-.+.+.+
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD-~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYD-IIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCC-EEEecccHHHHHHHHHh
Confidence 478899999999999999743 3333 56777776555544443
No 278
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=65.93 E-value=22 Score=27.31 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=51.4
Q ss_pred ChHHHhhhHHHHHHHHHHHhcCCC-CCceEEEEEeCC-CChh--hHhhCCCCC-CCeEEEEecCccceeeeccccCHHHH
Q psy12669 56 CRFSVAMLPTFDEVLVTLINLLPE-PRKFAITKINCD-DYES--VCEDYNIVK-YPTVKIMRHGSIEKLEYRRERTVEAL 130 (157)
Q Consensus 56 C~~C~~~~~~~~~~~~~~~~~~~~-~~~v~~~~vd~~-~~~~--~~~~~~i~~-~P~~~~~~~g~~~~~~~~g~~~~~~l 130 (157)
||.|.+-......++.++.+.+.. +..+.++...|- +.+. ...++||-+ -+...+|..|+.+. +..+..-.+.+
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~-kv~~~~~~~~l 349 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIK-TLPEENIVEEL 349 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEee-eeChHhHHHHH
Confidence 888888877776666665544311 234888888884 4332 234577654 56688899999987 66665555555
Q ss_pred HHHHHHH
Q psy12669 131 VKYVREE 137 (157)
Q Consensus 131 ~~~l~~~ 137 (157)
.+-+.+.
T Consensus 350 ~~~i~~~ 356 (360)
T PRK00366 350 EAEIEAY 356 (360)
T ss_pred HHHHHHH
Confidence 5555443
No 279
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=65.25 E-value=23 Score=20.06 Aligned_cols=55 Identities=7% Similarity=-0.128 Sum_probs=32.1
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC----ChhhHhhCCCCCCCeEEEEecCc
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD----YESVCEDYNIVKYPTVKIMRHGS 115 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~P~~~~~~~g~ 115 (157)
..|+.+.|+.|++.+-.+.... -.+.+..+|... .+++.+.-.-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~g----------l~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKG----------LRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcC----------CCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 4678888999987764333332 234455566532 23455444556789885 3554
No 280
>KOG1651|consensus
Probab=63.89 E-value=44 Score=22.82 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=36.4
Q ss_pred ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q psy12669 42 DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD 92 (157)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~ 92 (157)
-+++.+||.=-|+.|+.-..-...+..+.++|+.. .+.+...-|+.
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~-----Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ-----GLEILAFPCNQ 77 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhC-----CeEEEEecccc
Confidence 36788888888999999888888999999999744 47777777763
No 281
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=63.68 E-value=11 Score=24.04 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=17.8
Q ss_pred EEEEecCCChHHHhhhHHHHHHH
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVL 70 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~ 70 (157)
+..|+.|.|..|++...-+++-.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 45689999999999886665433
No 282
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=63.53 E-value=17 Score=21.31 Aligned_cols=35 Identities=9% Similarity=0.164 Sum_probs=20.7
Q ss_pred CCCeEEEEe-cCccceeeeccccCHHHHHHHHHHHc
Q psy12669 104 KYPTVKIMR-HGSIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 104 ~~P~~~~~~-~g~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
.-|+++++. +|+.+..--....+.+.+.+|+.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 359999997 66665512234579999999998753
No 283
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=63.16 E-value=68 Score=24.78 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=71.5
Q ss_pred CceeecCcccHHH-hh-ccCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhH----hhC
Q psy12669 27 SQVIELDTDNVDY-VR-DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC----EDY 100 (157)
Q Consensus 27 ~~v~~l~~~~~~~-~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~ 100 (157)
..+..++..++-+ .- +-+...+|-|--..-+.-.++...+.++|++..+. .++.++-||-+..+-+. +.|
T Consensus 249 ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~n----p~LsivwIDPD~fPllv~yWE~tF 324 (383)
T PF01216_consen 249 PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDN----PDLSIVWIDPDDFPLLVPYWEKTF 324 (383)
T ss_dssp -SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-----TT--EEEE-GGG-HHHHHHHHHHH
T ss_pred hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcC----CceeEEEECCCCCchhHHHHHhhc
Confidence 3456777776533 33 23567888888888999999999999999886433 47999999999887554 457
Q ss_pred CCC-CCCeEEEEe--cCccceeeecc---ccCHHHHHHHHHHHcCCCcee
Q psy12669 101 NIV-KYPTVKIMR--HGSIEKLEYRR---ERTVEALVKYVREELMDPTIE 144 (157)
Q Consensus 101 ~i~-~~P~~~~~~--~g~~~~~~~~g---~~~~~~l~~~l~~~~~~~~~~ 144 (157)
+|. .-|.+-+.+ +...++....+ ..+++.+..|+.+.+...+..
T Consensus 325 ~Idl~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 325 GIDLSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp TT-TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred CccccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 775 459998886 44455534443 247899999999999765543
No 284
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=62.70 E-value=9.4 Score=23.69 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=36.0
Q ss_pred EecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCC--CCCeEEE-EecCc
Q psy12669 51 FYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIV--KYPTVKI-MRHGS 115 (157)
Q Consensus 51 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~--~~P~~~~-~~~g~ 115 (157)
||-.+|+.|......+.+... .+.+.+..+.-....++.+.+++. ..-+.++ ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--------GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--------CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 788899999999887776621 256777766444444445566654 3444444 35665
No 285
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=59.85 E-value=36 Score=21.02 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=41.6
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCC--C--------CCCCeE-EEEecCccc
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYN--I--------VKYPTV-KIMRHGSIE 117 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~--i--------~~~P~~-~~~~~g~~~ 117 (157)
|.+|.+.+....+....-+++...+.. .++.|-.+|+..+++.-+.+. + .+.|.. -+|.+++..
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a-----~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEA-----KKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYC 77 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHH-----TT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEE
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHH-----cCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEE
Confidence 444555566677777777777777753 479999999998654332211 1 222222 467777666
Q ss_pred eeeeccc---cCHHHHHHHH
Q psy12669 118 KLEYRRE---RTVEALVKYV 134 (157)
Q Consensus 118 ~~~~~g~---~~~~~l~~~l 134 (157)
+ .|... ...+.+.+|+
T Consensus 78 G-dye~f~ea~E~~~L~~fL 96 (99)
T PF04908_consen 78 G-DYEDFEEANENGELEEFL 96 (99)
T ss_dssp E-EHHHHHHHHCTT-HHHHH
T ss_pred e-eHHHHHHHHhhCHHHHHh
Confidence 5 45432 3334444444
No 286
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=59.62 E-value=11 Score=27.68 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=39.4
Q ss_pred CCCChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHHHHcCCCceeccCccccc
Q psy12669 90 CDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENLV 152 (157)
Q Consensus 90 ~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 152 (157)
|+-.++.+++++|..+|--+.+.+. ... +.. ..+.+++.+.+.+.-..+.+..++..++.
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~~~-~y~-D~~-~i~~~~~y~~~~~~~~~p~TS~ps~~~~~ 68 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIIDGK-TYR-DGV-DITPEEFYEKLKESKELPKTSQPSPGEFL 68 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEECCE-Eee-cCC-CCCHHHHHHHHHhcCCCCCcCCCCHHHHH
Confidence 3445778899999999988877643 221 111 37889999998765444455555555543
No 287
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=58.52 E-value=12 Score=23.40 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=22.4
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY 93 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 93 (157)
..|+.+.|..|++...-+++ .++.+-.+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~------------~~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE------------AGIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH------------CCCCeEEEecccC
Confidence 46889999999998744433 2355666676554
No 288
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=58.19 E-value=55 Score=23.78 Aligned_cols=79 Identities=11% Similarity=0.118 Sum_probs=48.7
Q ss_pred EEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEE--EeCCCC----------------hhhHhhCCCCCCCeE
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITK--INCDDY----------------ESVCEDYNIVKYPTV 108 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~--vd~~~~----------------~~~~~~~~i~~~P~~ 108 (157)
|+=.|++..|.-|-.....+.+++++ +++.-.. ||..+. ..+.+.|+-++++|=
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~--------~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTP 115 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADD--------PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTP 115 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccC--------CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCc
Confidence 44458888899998888888888766 3355444 443332 244456777777665
Q ss_pred EEEecCccceeeeccccCHHHHHHHHHHH
Q psy12669 109 KIMRHGSIEKLEYRRERTVEALVKYVREE 137 (157)
Q Consensus 109 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 137 (157)
-.+-+|+... . ..+...|.+-|...
T Consensus 116 QavvnGr~~~---~-Gad~~~i~~~i~a~ 140 (261)
T COG5429 116 QAVVNGRVHA---N-GADPGAIEDAIAAM 140 (261)
T ss_pred hheeechhhh---c-CCCHHHHHHHHHHh
Confidence 5555665442 2 25566666666554
No 289
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=57.16 E-value=13 Score=23.36 Aligned_cols=74 Identities=9% Similarity=0.150 Sum_probs=39.9
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-------hhHhhCCCCCCCe-EEEEe-cCccce-
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-------SVCEDYNIVKYPT-VKIMR-HGSIEK- 118 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~~~~~~~i~~~P~-~~~~~-~g~~~~- 118 (157)
..|+.+.|..|++...-+++- ++.+-.+|..+.+ .+.+..+ .+. --+++ +|....
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------------~i~~~~~di~~~p~t~~el~~~l~~~g---~~~~~~lin~~~~~~~~ 66 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------------GIEPEVVKYLKNPPTKSELEAIFAKLG---LTVAREMIRTKEALYKE 66 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------------CCCeEEEeccCCCcCHHHHHHHHHHcC---CchHHHHHhcCCcHHHH
Confidence 468999999999987655542 3555566765543 3444444 222 11343 333221
Q ss_pred eeec-cccCHHHHHHHHHHH
Q psy12669 119 LEYR-RERTVEALVKYVREE 137 (157)
Q Consensus 119 ~~~~-g~~~~~~l~~~l~~~ 137 (157)
.... ...+.+++.+.+.+.
T Consensus 67 l~~~~~~ls~~e~i~~l~~~ 86 (114)
T TIGR00014 67 LGLSDPNLSDQELLDAMVAH 86 (114)
T ss_pred cCCCccCCCHHHHHHHHHHC
Confidence 0011 135566777777664
No 290
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=56.22 E-value=9.7 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.7
Q ss_pred CCCCCCeEEEEecCccceeeecc
Q psy12669 101 NIVKYPTVKIMRHGSIEKLEYRR 123 (157)
Q Consensus 101 ~i~~~P~~~~~~~g~~~~~~~~g 123 (157)
-.+-||++++.++|..+.++|..
T Consensus 41 Y~R~Ypv~lV~pDGSTI~Iry~E 63 (116)
T PF09776_consen 41 YARLYPVLLVRPDGSTINIRYHE 63 (116)
T ss_pred hhhhccEEEEecCCCEEEEeccC
Confidence 34579999999999998777764
No 291
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.71 E-value=9.6 Score=25.91 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=17.1
Q ss_pred hhHhhCCCCCCCeEEEEecCc
Q psy12669 95 SVCEDYNIVKYPTVKIMRHGS 115 (157)
Q Consensus 95 ~~~~~~~i~~~P~~~~~~~g~ 115 (157)
+.+.++||.++|++++...+.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 445678999999999998665
No 292
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=54.31 E-value=37 Score=18.94 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=38.4
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC----CChhhHhhCCCCCCCeEEEEecCccceeeecc
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD----DYESVCEDYNIVKYPTVKIMRHGSIEKLEYRR 123 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g 123 (157)
+-.|+.+.|+.|.+..-.+....-. +....++.. ..+++.+......+|++. .+|..+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~----------~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l------ 63 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD----------YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKL------ 63 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC----------cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEE------
Confidence 4456677799998887655554322 334444432 234455555667899874 234322
Q ss_pred ccCHHHHHHHHH
Q psy12669 124 ERTVEALVKYVR 135 (157)
Q Consensus 124 ~~~~~~l~~~l~ 135 (157)
.+...|..|+.
T Consensus 64 -~es~aI~~yL~ 74 (76)
T cd03053 64 -FESRAITRYLA 74 (76)
T ss_pred -EcHHHHHHHHh
Confidence 33455666654
No 293
>COG3411 Ferredoxin [Energy production and conversion]
Probab=53.91 E-value=31 Score=19.48 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=22.6
Q ss_pred CCeEEEEecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 105 YPTVKIMRHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 105 ~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
=|++++|++| ++ .+..++++....+++++.
T Consensus 17 gPvl~vYpeg--vW---Y~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEG--VW---YTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCC--ee---EeccCHHHHHHHHHHHHh
Confidence 4999999998 33 345778888888888754
No 294
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=52.45 E-value=24 Score=22.71 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=16.8
Q ss_pred EEEEEecCCChHHHhhhHHHHH
Q psy12669 47 VLILFYVKWCRFSVAMLPTFDE 68 (157)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~~~~ 68 (157)
.+..|+.|.|..|++...-+++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHH
Confidence 3557888999999998765543
No 295
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=51.48 E-value=11 Score=27.66 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=36.5
Q ss_pred CCChhhHhhCCCCCCCeEEEEecCccceeeecc-ccCHHHHHHHHHHHcCCCceeccCcccccc
Q psy12669 91 DDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRR-ERTVEALVKYVREELMDPTIEIPEEENLVN 153 (157)
Q Consensus 91 ~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 153 (157)
+-.++..++++|..+|..+.+.+. . ..+| ..+.+++.+.+.+.-..+.+..++..++.+
T Consensus 11 dl~~~~~~~~~i~vvPl~i~~~~~-~---y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~ 70 (280)
T PF02645_consen 11 DLPPELAEEYGIYVVPLNIIIDGK-E---YRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEE 70 (280)
T ss_dssp ---HHHHHHTTEEEE--EEEETTE-E---EETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHH
T ss_pred CCCHHHHHhCCeEEEeEEEecCCe-E---EecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHH
Confidence 344688899999999988887752 1 1344 578999999997765555566666666543
No 296
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=51.10 E-value=5 Score=26.10 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHHHHhh
Q psy12669 1 MLPCRLAAFSVLILVLSDV 19 (157)
Q Consensus 1 m~~~~l~~~~~~~~~~~~~ 19 (157)
|.+|.|.++.++|+.+.++
T Consensus 1 m~pr~l~~LavLL~~A~Lf 19 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAALF 19 (143)
T ss_dssp -------------------
T ss_pred Ccccccccccccccccccc
Confidence 7889888877777765443
No 297
>PHA02151 hypothetical protein
Probab=51.00 E-value=9.4 Score=25.71 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=13.6
Q ss_pred hccCCeEEEEEecCCCh
Q psy12669 41 RDNYDFVLILFYVKWCR 57 (157)
Q Consensus 41 ~~~~~~~lv~f~~~~C~ 57 (157)
++.+..-+|+||..||.
T Consensus 200 inr~h~~~v~fy~kwct 216 (217)
T PHA02151 200 INRNHDRYVHFYKKWCT 216 (217)
T ss_pred ecccCceEEEEehhhcc
Confidence 35566789999999995
No 298
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=50.96 E-value=23 Score=21.34 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=18.7
Q ss_pred cCCCCceeecCcccHHHhhccCCeEEEEEecC
Q psy12669 23 SVNNSQVIELDTDNVDYVRDNYDFVLILFYVK 54 (157)
Q Consensus 23 ~~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~ 54 (157)
....+...+++..+|.+.+++++..=|.+...
T Consensus 21 ~~~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~ 52 (110)
T PF06480_consen 21 NSNNSQTKEISYSEFLQMLEKGNVKKVVIQND 52 (110)
T ss_dssp -----SSEE--HHHHHHTGGGT-EEEEEEETT
T ss_pred hcccCCCcEECHHHHHHHHHcCCEEEEEEECC
Confidence 44567888999999998888888766666544
No 299
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=50.61 E-value=28 Score=22.05 Aligned_cols=75 Identities=9% Similarity=0.151 Sum_probs=48.2
Q ss_pred ChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-hhHhhCC--CCCCCeEEEEecCccce---eeeccc---cC
Q psy12669 56 CRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-SVCEDYN--IVKYPTVKIMRHGSIEK---LEYRRE---RT 126 (157)
Q Consensus 56 C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~--i~~~P~~~~~~~g~~~~---~~~~g~---~~ 126 (157)
|++|..++-.+.....- ..++.+..|+.-..+ ++....| =++.|++++=. |.... -.+.|. .+
T Consensus 24 Cp~c~~iEGlLa~~P~l-------~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~-~~~~~~~~~~~~~~rfi~d 95 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDL-------RERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD-GAPSPDDAGSHGGRRFIDD 95 (112)
T ss_pred CCchHHHHhHHhhChhh-------hhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC-CCCCcccccccCCeEEeCC
Confidence 99999999888766544 356889999998875 3344444 35889876543 33221 022222 46
Q ss_pred HHHHHHHHHHHc
Q psy12669 127 VEALVKYVREEL 138 (157)
Q Consensus 127 ~~~l~~~l~~~~ 138 (157)
++.|..++.+.-
T Consensus 96 ~~~I~~~La~r~ 107 (112)
T PF11287_consen 96 PRRILRYLAERH 107 (112)
T ss_pred HHHHHHHHHHHc
Confidence 778888876653
No 300
>KOG1364|consensus
Probab=50.38 E-value=48 Score=25.43 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=44.5
Q ss_pred CceEEEEEeCCCChhhHhhCCCCCCCeEEEEe--cCccceeeeccccCHHHHHHHHHHHcCCC
Q psy12669 81 RKFAITKINCDDYESVCEDYNIVKYPTVKIMR--HGSIEKLEYRRERTVEALVKYVREELMDP 141 (157)
Q Consensus 81 ~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~--~g~~~~~~~~g~~~~~~l~~~l~~~~~~~ 141 (157)
.....+..|-.+...+..-|.+...|.+.++. -|+.+. +..|...+++|..-+++++..-
T Consensus 131 ~~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~-~ws~vi~~~~fl~~l~~Fi~~~ 192 (356)
T KOG1364|consen 131 QRWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVK-RWSGVIEPEQFLSDLNEFIDSC 192 (356)
T ss_pred ceEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhh-hhccccCHHHHHHHHHHHHhcC
Confidence 34444455555666777788999999888885 677777 7788888988888888887643
No 301
>KOG2244|consensus
Probab=49.63 E-value=22 Score=29.08 Aligned_cols=105 Identities=11% Similarity=0.152 Sum_probs=66.2
Q ss_pred ceeecCcccHHHhhccCCeEEEEEecCCChHHHhhhH-HH--HHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh-----
Q psy12669 28 QVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLP-TF--DEVLVTLINLLPEPRKFAITKINCDDYESVCED----- 99 (157)
Q Consensus 28 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~----- 99 (157)
+...-..+.|+++.++++++++-.--+.|..|.-++. .| ++.++.+. .++.-++||-++.+++-+-
T Consensus 96 dwypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~iln------enfv~ikVDREERPDVDK~YM~Fv 169 (786)
T KOG2244|consen 96 DWYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILN------ENFVKIKVDREERPDVDKLYMAFV 169 (786)
T ss_pred ccCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHh------hhhhhhccChhhcCchHHHHHHHH
Confidence 3444456778888899999999998888999998875 33 33555553 2455567777777766552
Q ss_pred ---CCCCCCCeEEEEe-c------Cccce-eeeccccCHHHHHHHHHHHc
Q psy12669 100 ---YNIVKYPTVKIMR-H------GSIEK-LEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 100 ---~~i~~~P~~~~~~-~------g~~~~-~~~~g~~~~~~l~~~l~~~~ 138 (157)
.+--++|--++.. + |...+ ..-.|......+.+-|.+..
T Consensus 170 ~assg~GGWPmsV~LTPdL~PlvgGTYFPP~d~~g~~gF~TvL~~I~~~w 219 (786)
T KOG2244|consen 170 VASSGGGGWPMSVFLTPDLKPLVGGTYFPPNDNYGRPGFKTVLKKIKDAW 219 (786)
T ss_pred HhccCCCCCceeEEeCCCcccccCCcccCCCCCCCCccHHHHHHHHHHHH
Confidence 3556777655553 2 22221 12345666677776665543
No 302
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=49.18 E-value=87 Score=21.68 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=33.0
Q ss_pred eEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-hhhHhhCCCCCCCeEE
Q psy12669 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-ESVCEDYNIVKYPTVK 109 (157)
Q Consensus 46 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~~P~~~ 109 (157)
..+-.|+.+.|+.|.+..-.+.... -.+....+|.... +++-+...-..+|++.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~g----------l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~ 63 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKG----------VSVEIEQVEKDNLPQDLIDLNPYQSVPTLV 63 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCC----------CCCEEEeCCcccCCHHHHHhCCCCCCCEEE
Confidence 3455666788999999885554432 2344556665433 3444444456789885
No 303
>KOG1731|consensus
Probab=48.55 E-value=34 Score=28.08 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=37.7
Q ss_pred CceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 81 RKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 81 ~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+++.+..+-..+...+.+ +++...|+..+|++|+... -.....+.+...+.|.+.++
T Consensus 214 ~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~-l~~~~~s~~~y~~~I~~~lg 270 (606)
T KOG1731|consen 214 KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQP-LWPSSSSRSAYVKKIDDLLG 270 (606)
T ss_pred CCcceEEEecchhccccc-cCCCCchhhhhhcCCcccc-cccccccHHHHHHHHHHHhc
Confidence 456666666666666666 9999999999999998875 23333444344444544444
No 304
>PRK10853 putative reductase; Provisional
Probab=48.40 E-value=25 Score=22.33 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=23.0
Q ss_pred EEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC
Q psy12669 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY 93 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 93 (157)
+..|+.+.|..|++...-+++- ++.+-.+|.-+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------------~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------------GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------------CCCcEEeehccC
Confidence 3468889999999987655432 355566666544
No 305
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=47.97 E-value=39 Score=24.42 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=23.0
Q ss_pred CchhhHHHHHHHHHHHHhhhcccCCCCceeecCcccHHH
Q psy12669 1 MLPCRLAAFSVLILVLSDVVVGSVNNSQVIELDTDNVDY 39 (157)
Q Consensus 1 m~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 39 (157)
|+.|.+.++..+++++......-.+....+.+|+.|+.+
T Consensus 6 ~~~r~ls~~~~liav~~~~~~~~qpa~a~~vfdpSN~~Q 44 (252)
T COG5314 6 MRARALSMIAILIAVAFPSYAGVQPAQALIVFDPSNYAQ 44 (252)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCCccceeeecchHHHH
Confidence 344556655444444443334444456788888888875
No 306
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=45.56 E-value=53 Score=18.17 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=28.7
Q ss_pred EEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-ChhhHhhCCCCCCCeEE
Q psy12669 50 LFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-YESVCEDYNIVKYPTVK 109 (157)
Q Consensus 50 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~i~~~P~~~ 109 (157)
.|+.+.|++|.+.+-.+..... +-.+....+|..+ .+++.+......+|++.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~--------~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 55 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGL--------GDDVELVLVNPWSDDESLLAVNPLGKIPALV 55 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCC--------CCCcEEEEcCcccCChHHHHhCCCCCCCEEE
Confidence 4677889999977654444111 1124444554332 34444444566789764
No 307
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=45.54 E-value=25 Score=19.49 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHhhhcccC--CCCceeecCcccHH
Q psy12669 4 CRLAAFSVLILVLSDVVVGSV--NNSQVIELDTDNVD 38 (157)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~ 38 (157)
.++.++.++.+.+.++...++ ..+...+.+.++++
T Consensus 3 ~Kl~vialLC~aLva~vQ~APQYa~GeeP~YDEdd~d 39 (65)
T PF10731_consen 3 SKLIVIALLCVALVAIVQSAPQYAPGEEPSYDEDDDD 39 (65)
T ss_pred chhhHHHHHHHHHHHHHhcCcccCCCCCCCcCcccCc
Confidence 344444444444333332221 12444555555554
No 308
>PRK09810 entericidin A; Provisional
Probab=44.62 E-value=38 Score=17.26 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=6.9
Q ss_pred CchhhHHHHHHHHHHHH
Q psy12669 1 MLPCRLAAFSVLILVLS 17 (157)
Q Consensus 1 m~~~~l~~~~~~~~~~~ 17 (157)
|+.+.+.++++.+++++
T Consensus 1 mMkk~~~l~~~~~~~L~ 17 (41)
T PRK09810 1 MMKRLIVLVLLASTLLT 17 (41)
T ss_pred ChHHHHHHHHHHHHHHh
Confidence 54444444433333333
No 309
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=44.34 E-value=65 Score=20.55 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=27.1
Q ss_pred CCCCeEEEEecCccceeeeccccCHHHHHHHHHHHc
Q psy12669 103 VKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 103 ~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
.++|.+++|++-+.+. -+.--.+.+.+.+-+++..
T Consensus 81 p~~PiL~YFkE~qsiH-FlPiiFd~~~L~~~l~~r~ 115 (116)
T PF11317_consen 81 PGFPILFYFKETQSIH-FLPIIFDPKQLREQLEERC 115 (116)
T ss_pred CCCCEEEEEecCCcce-eeeeecCHHHHHHHHHHhC
Confidence 3689999999888876 4555688888888887654
No 310
>PRK10026 arsenate reductase; Provisional
Probab=43.63 E-value=36 Score=22.47 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=16.5
Q ss_pred EEEEecCCChHHHhhhHHHHH
Q psy12669 48 LILFYVKWCRFSVAMLPTFDE 68 (157)
Q Consensus 48 lv~f~~~~C~~C~~~~~~~~~ 68 (157)
+..|+.+.|..|++...-+++
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN 24 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456889999999998865543
No 311
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=43.25 E-value=25 Score=26.80 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=39.7
Q ss_pred ChHHHhhhHHHHHHHHHHHhcCC-CCCceEEEEEeCCCC-hhhH--hhCCCCC--CCeEEEEecCccceeeecc
Q psy12669 56 CRFSVAMLPTFDEVLVTLINLLP-EPRKFAITKINCDDY-ESVC--EDYNIVK--YPTVKIMRHGSIEKLEYRR 123 (157)
Q Consensus 56 C~~C~~~~~~~~~~~~~~~~~~~-~~~~v~~~~vd~~~~-~~~~--~~~~i~~--~P~~~~~~~g~~~~~~~~g 123 (157)
||.|-+..-.+..++++..+... .+..+.++.+.|--| +.=+ .+++|-+ .-...+|++|+.+. +..+
T Consensus 262 CPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~-kv~~ 334 (346)
T TIGR00612 262 CPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKA-KQPE 334 (346)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeE-ecCH
Confidence 77777766655555544433211 045688888888644 2112 2466653 35578899998876 4443
No 312
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=43.00 E-value=35 Score=15.36 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHHHH
Q psy12669 3 PCRLAAFSVLILVLS 17 (157)
Q Consensus 3 ~~~l~~~~~~~~~~~ 17 (157)
++++++.++.++.++
T Consensus 7 mKkil~~l~a~~~La 21 (25)
T PF08139_consen 7 MKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHh
Confidence 355544444444333
No 313
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=42.75 E-value=27 Score=21.63 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=37.0
Q ss_pred EecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCh-------hhHhhCCCCCCCeEEEEe-cCccceeeec
Q psy12669 51 FYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE-------SVCEDYNIVKYPTVKIMR-HGSIEKLEYR 122 (157)
Q Consensus 51 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~~~~~~~i~~~P~~~~~~-~g~~~~~~~~ 122 (157)
|+.+.|..|++...-+++- ++.+-.+|..+.+ ++.+.++.. .--+++ +|.... ...
T Consensus 1 Y~~~~C~t~rka~~~L~~~------------gi~~~~~d~~k~p~s~~el~~~l~~~~~~---~~~lin~~~~~~k-~l~ 64 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------------GIEYEFIDYKKEPLSREELRELLSKLGNG---PDDLINTRSKTYK-ELG 64 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------------T--EEEEETTTS---HHHHHHHHHHHTSS---GGGGB-TTSHHHH-HTT
T ss_pred CcCCCCHHHHHHHHHHHHc------------CCCeEeehhhhCCCCHHHHHHHHHHhccc---HHHHhcCccchHh-hhh
Confidence 6789999999988766542 3556677887653 333344422 111222 332222 112
Q ss_pred ----cccCHHHHHHHHHHH
Q psy12669 123 ----RERTVEALVKYVREE 137 (157)
Q Consensus 123 ----g~~~~~~l~~~l~~~ 137 (157)
...+.+++.+.+.+.
T Consensus 65 ~~~~~~~s~~e~i~~l~~~ 83 (110)
T PF03960_consen 65 KLKKDDLSDEELIELLLEN 83 (110)
T ss_dssp HHHCTTSBHHHHHHHHHHS
T ss_pred hhhhhhhhhHHHHHHHHhC
Confidence 346678888888765
No 314
>KOG0911|consensus
Probab=39.81 E-value=96 Score=22.32 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=38.0
Q ss_pred cCCeEEEEE----ecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCC-CCCCCeE-EEEecCcc
Q psy12669 43 NYDFVLILF----YVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYN-IVKYPTV-KIMRHGSI 116 (157)
Q Consensus 43 ~~~~~lv~f----~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~-i~~~P~~-~~~~~g~~ 116 (157)
+.+++++.- -.|.|+..++....++. .++.+...|+-.+.++..... ...+||+ -+|-+|+.
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~------------~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEF 204 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQS------------HNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEF 204 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHH------------cCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEe
Confidence 344544433 23567777766654432 246789999998888766543 3456765 45666743
Q ss_pred c
Q psy12669 117 E 117 (157)
Q Consensus 117 ~ 117 (157)
+
T Consensus 205 i 205 (227)
T KOG0911|consen 205 I 205 (227)
T ss_pred c
Confidence 3
No 315
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=39.75 E-value=1.1e+02 Score=20.56 Aligned_cols=44 Identities=5% Similarity=0.100 Sum_probs=35.6
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCC-ceEEEEEeCCC
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR-KFAITKINCDD 92 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~-~v~~~~vd~~~ 92 (157)
.++-..+.++++..+.|.-+...+..+++.+. + ++.+-.+++.+
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~------~~~v~i~~~~~~~ 170 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFF------ELDVEIEHVECMH 170 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTT------EEEEEEEEEECCC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhC------CCCeEEEEecccC
Confidence 34567888999999999999999999999983 4 67777777654
No 316
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=38.60 E-value=90 Score=18.84 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=23.2
Q ss_pred ChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHh
Q psy12669 56 CRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCE 98 (157)
Q Consensus 56 C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~ 98 (157)
+.-.++....=+.+..-+.. .++.|-.+|++.+++..+
T Consensus 9 ~~g~~~~k~~~~~v~~lL~~-----k~I~f~eiDI~~d~~~r~ 46 (92)
T cd03030 9 SSGSTEIKKRQQEVLGFLEA-----KKIEFEEVDISMNEENRQ 46 (92)
T ss_pred ccccHHHHHHHHHHHHHHHH-----CCCceEEEecCCCHHHHH
Confidence 44455555555555555542 368899999987765443
No 317
>PRK13617 psbV cytochrome c-550; Provisional
Probab=37.03 E-value=29 Score=23.74 Aligned_cols=10 Identities=20% Similarity=-0.001 Sum_probs=7.9
Q ss_pred cCCChHHHhh
Q psy12669 53 VKWCRFSVAM 62 (157)
Q Consensus 53 ~~~C~~C~~~ 62 (157)
...|..|+..
T Consensus 67 ~~~C~~CH~~ 76 (170)
T PRK13617 67 NTSCGTCHAG 76 (170)
T ss_pred HcchhhhccC
Confidence 7789999943
No 318
>KOG0833|consensus
Probab=36.46 E-value=25 Score=24.09 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=13.1
Q ss_pred cCCChHHHhhhHHHHHH
Q psy12669 53 VKWCRFSVAMLPTFDEV 69 (157)
Q Consensus 53 ~~~C~~C~~~~~~~~~~ 69 (157)
.+=|+.|+++..++.+.
T Consensus 102 ~tPCG~CRQfl~Ef~~~ 118 (173)
T KOG0833|consen 102 TTPCGVCRQFLREFGNA 118 (173)
T ss_pred CCCcHHHHHHHHHHhhc
Confidence 34499999999887664
No 319
>COG5510 Predicted small secreted protein [Function unknown]
Probab=36.06 E-value=67 Score=16.59 Aligned_cols=8 Identities=13% Similarity=0.164 Sum_probs=3.7
Q ss_pred CchhhHHH
Q psy12669 1 MLPCRLAA 8 (157)
Q Consensus 1 m~~~~l~~ 8 (157)
|+.+.+++
T Consensus 1 mmk~t~l~ 8 (44)
T COG5510 1 MMKKTILL 8 (44)
T ss_pred CchHHHHH
Confidence 45554433
No 320
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=35.91 E-value=59 Score=18.60 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=23.4
Q ss_pred EecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 111 MRHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 111 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
+++|+.+..+|....+..++.+|+.....
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~ 37 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGP 37 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 35888776588888999999999987654
No 321
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=35.37 E-value=67 Score=19.15 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=4.5
Q ss_pred HHHHHHHhhhcc
Q psy12669 11 VLILVLSDVVVG 22 (157)
Q Consensus 11 ~~~~~~~~~~~~ 22 (157)
++++++..++..
T Consensus 36 IIiLlImlfqsS 47 (85)
T PF10717_consen 36 IIILLIMLFQSS 47 (85)
T ss_pred HHHHHHHHHhcc
Confidence 333333334433
No 322
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=35.23 E-value=1.3e+02 Score=19.80 Aligned_cols=65 Identities=8% Similarity=0.055 Sum_probs=43.7
Q ss_pred cCCeEEEEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCC-CeEEEEe-cCc
Q psy12669 43 NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY-PTVKIMR-HGS 115 (157)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~-P~~~~~~-~g~ 115 (157)
.+++-.|.+|--.|+-|-....-+.+.-. .+.+.|..+..+....+.+..++..- +..+++. +|+
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~--------~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~ 71 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQ--------GGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQ 71 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhcc--------CCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCc
Confidence 35567788999999999985443333211 46899999888887777777776532 5555554 443
No 323
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=35.17 E-value=69 Score=16.95 Aligned_cols=8 Identities=38% Similarity=0.422 Sum_probs=4.0
Q ss_pred CchhhHHH
Q psy12669 1 MLPCRLAA 8 (157)
Q Consensus 1 m~~~~l~~ 8 (157)
|+-+.+.+
T Consensus 1 MmKk~i~~ 8 (48)
T PRK10081 1 MVKKTIAA 8 (48)
T ss_pred ChHHHHHH
Confidence 55554444
No 324
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=34.76 E-value=27 Score=20.92 Aligned_cols=30 Identities=10% Similarity=0.305 Sum_probs=21.2
Q ss_pred eeccccCHHHHHHHHHHHcCCCceeccCccccccc
Q psy12669 120 EYRRERTVEALVKYVREELMDPTIEIPEEENLVNV 154 (157)
Q Consensus 120 ~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 154 (157)
.|...-+-++|.+|+.++++. ++.+.+|+|
T Consensus 25 ty~nt~sG~~Iv~~L~~n~~~-----~s~~~aE~f 54 (84)
T cd04436 25 TYQNTSSGSEIVSWLQENMPE-----KDLDAAEAF 54 (84)
T ss_pred cccCcccHHHHHHHHHHcCCC-----CCHHHHHHH
Confidence 455556678999999999875 555555554
No 325
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.74 E-value=1.4e+02 Score=21.54 Aligned_cols=49 Identities=10% Similarity=0.224 Sum_probs=36.2
Q ss_pred ChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccce
Q psy12669 56 CRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEK 118 (157)
Q Consensus 56 C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~ 118 (157)
=.||.+++..+.++++++ +..+.++--|++-....++ .++.+++|+.+.
T Consensus 168 mkHsv~iMk~Lrrla~el------~KtiviVlHDINfAS~YsD--------~IVAlK~G~vv~ 216 (252)
T COG4604 168 MKHSVQIMKILRRLADEL------GKTIVVVLHDINFASCYSD--------HIVALKNGKVVK 216 (252)
T ss_pred hHHHHHHHHHHHHHHHHh------CCeEEEEEecccHHHhhhh--------heeeecCCEEEe
Confidence 389999999999999998 4556666666655443333 478889998774
No 326
>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.90 E-value=2.1e+02 Score=21.67 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=50.8
Q ss_pred CeEEEEEecCCChHHHhhh-HHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCC-CCCCeEEEEecCccceeeec
Q psy12669 45 DFVLILFYVKWCRFSVAML-PTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNI-VKYPTVKIMRHGSIEKLEYR 122 (157)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~-~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i-~~~P~~~~~~~g~~~~~~~~ 122 (157)
+..+|-=++..-.-|.++- |....+-..+.... ..++.+=. |..++- +-.||++-++.| +|.
T Consensus 132 RdiLVCTHgn~D~cCarfG~P~Y~~~r~~~a~l~--~~~lRvWq---------~SHfgGHrFAPTlidlP~G-----qyy 195 (316)
T COG4759 132 RDILVCTHGNVDVCCARFGYPFYQQLRAQYADLN--LENLRVWQ---------SSHFGGHRFAPTLIDLPQG-----QYY 195 (316)
T ss_pred ceEEEecCCChhhhhhhcCcHHHHHHHHhhhhcc--ccceEEEE---------ecccCccccCchhhcCCCC-----cee
Confidence 4677777777777788885 44455555554332 23344443 223332 234999999998 788
Q ss_pred cccCHHHHHHHHHHHcC
Q psy12669 123 RERTVEALVKYVREELM 139 (157)
Q Consensus 123 g~~~~~~l~~~l~~~~~ 139 (157)
|-++.+.+...+.+...
T Consensus 196 G~Ld~~~~~~l~~r~gd 212 (316)
T COG4759 196 GHLDPESLDSLLTRTGD 212 (316)
T ss_pred eecCHHHHHHHHhccCc
Confidence 88888888888876543
No 327
>PRK10387 glutaredoxin 2; Provisional
Probab=33.88 E-value=1.5e+02 Score=20.16 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=14.0
Q ss_pred EEecCCChHHHhhhHHHHHH
Q psy12669 50 LFYVKWCRFSVAMLPTFDEV 69 (157)
Q Consensus 50 ~f~~~~C~~C~~~~~~~~~~ 69 (157)
.++.+.|++|.+..-.+...
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~ 22 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLK 22 (210)
T ss_pred EEeCCCCchHHHHHHHHHHc
Confidence 35677799999877655444
No 328
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=31.57 E-value=44 Score=21.74 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=9.9
Q ss_pred CchhhHHHHHHHHHH
Q psy12669 1 MLPCRLAAFSVLILV 15 (157)
Q Consensus 1 m~~~~l~~~~~~~~~ 15 (157)
|+.|||+--++++.+
T Consensus 1 MmtcRLLCalLvlaL 15 (143)
T PF01456_consen 1 MMTCRLLCALLVLAL 15 (143)
T ss_pred CchHHHHHHHHHHHH
Confidence 899998774444333
No 329
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=31.42 E-value=41 Score=21.06 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=13.5
Q ss_pred hhhHhhCCCCCCCeEE
Q psy12669 94 ESVCEDYNIVKYPTVK 109 (157)
Q Consensus 94 ~~~~~~~~i~~~P~~~ 109 (157)
.+++++++++.||.++
T Consensus 83 ddLa~rL~l~hYPvLi 98 (105)
T TIGR03765 83 DDLAERLGLRHYPVLI 98 (105)
T ss_pred HHHHHHhCCCcccEEE
Confidence 4788999999999764
No 330
>KOG4052|consensus
Probab=31.16 E-value=1.2e+02 Score=20.72 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=16.6
Q ss_pred EEecCCChHHHhhhHHHHHHHHH
Q psy12669 50 LFYVKWCRFSVAMLPTFDEVLVT 72 (157)
Q Consensus 50 ~f~~~~C~~C~~~~~~~~~~~~~ 72 (157)
.++.+-|.-|+-..-+++.-...
T Consensus 30 vrlpsKCEvCkllatEleA~l~e 52 (190)
T KOG4052|consen 30 VRLPSKCEVCKLLATELEAKLEE 52 (190)
T ss_pred ccccchhHHHHHHHHHHHHHHhh
Confidence 46777899998888777665433
No 331
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=31.03 E-value=1e+02 Score=17.08 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=36.6
Q ss_pred EEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-ChhhHhhCCC-CCCCeEEEEecCccceeeeccccCH
Q psy12669 50 LFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-YESVCEDYNI-VKYPTVKIMRHGSIEKLEYRRERTV 127 (157)
Q Consensus 50 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~P~~~~~~~g~~~~~~~~g~~~~ 127 (157)
.++.+.|++|.+..-.+....-. .....++... .+++.+.... ..+|++.. +|..+ .+.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~----------~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l-------~eS 63 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP----------YEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPI-------CES 63 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC----------CEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEe-------ehH
Confidence 46678899999888665554322 3333444432 2333333333 57898853 34222 334
Q ss_pred HHHHHHHHH
Q psy12669 128 EALVKYVRE 136 (157)
Q Consensus 128 ~~l~~~l~~ 136 (157)
..|..++.+
T Consensus 64 ~aI~~yL~~ 72 (74)
T cd03058 64 LIIVEYIDE 72 (74)
T ss_pred HHHHHHHHh
Confidence 566666654
No 332
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=30.93 E-value=84 Score=20.87 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHhhhcccCCCCceeecCcccHHHh
Q psy12669 4 CRLAAFSVLILVLSDVVVGSVNNSQVIELDTDNVDYV 40 (157)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 40 (157)
|++..+++.+++....++..+........+++++..+
T Consensus 2 r~~~s~~Lv~~~~~Lvsc~~p~~~~p~tysp~~l~~i 38 (142)
T TIGR03042 2 RSLASLLLVLLLTFLVSCSGPAAAVPPTYSPAQLAQI 38 (142)
T ss_pred hhHHHHHHHHHHHHHHHcCCCcccCCCCCCHHHHHHH
Confidence 4444433333333333433332233445666666543
No 333
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=30.74 E-value=1e+02 Score=17.17 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=29.8
Q ss_pred EEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCC---CChhhHhhCCCCCCCeEEE
Q psy12669 50 LFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD---DYESVCEDYNIVKYPTVKI 110 (157)
Q Consensus 50 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~---~~~~~~~~~~i~~~P~~~~ 110 (157)
.|+.+.|+.|.+..-.+.... -.+....+|.. ..+++.+......+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~g----------i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNG----------LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcC----------CceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 466777888887765554332 23555556654 2344454445667898854
No 334
>PRK13791 lysozyme inhibitor; Provisional
Probab=30.54 E-value=66 Score=20.40 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=8.5
Q ss_pred CchhhHHHHHHHHHHHHhhhc
Q psy12669 1 MLPCRLAAFSVLILVLSDVVV 21 (157)
Q Consensus 1 m~~~~l~~~~~~~~~~~~~~~ 21 (157)
|+..+.+++.+++++++..+.
T Consensus 1 ~~~mk~~~~~~~~~~ls~~~~ 21 (113)
T PRK13791 1 MMKRKLIPFTLFLAALSASTT 21 (113)
T ss_pred CchHHHHHHHHHHHHHhhhhh
Confidence 343333344444444443333
No 335
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.33 E-value=68 Score=23.84 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=37.6
Q ss_pred eCCCChhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHHHHHHHcCCCceeccCccccc
Q psy12669 89 NCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENLV 152 (157)
Q Consensus 89 d~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 152 (157)
.++-.+++.++++|..+|--+.+.++.... ....+.+++..-....-..+.+..++.+++.
T Consensus 10 t~dl~~~~~~~~~I~vlPL~V~~~g~~y~D---~~~l~~~~~~~~~~~~~~~p~TSqPs~~~~~ 70 (282)
T COG1307 10 TADLPPELAEKLDITVLPLSVIIDGESYFD---GVELSPDQFYYEMAEKGELPKTSQPSPGEFE 70 (282)
T ss_pred CCCCCHHHHHhCCeEEEeEEEEECCEEeec---cccCCHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 456678889999999999888887542221 1235666655555544444555555555543
No 336
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=29.93 E-value=88 Score=21.73 Aligned_cols=36 Identities=14% Similarity=0.320 Sum_probs=21.6
Q ss_pred HhhCCCCCCCeEEEEec-CccceeeeccccCHHHHHHHH
Q psy12669 97 CEDYNIVKYPTVKIMRH-GSIEKLEYRRERTVEALVKYV 134 (157)
Q Consensus 97 ~~~~~i~~~P~~~~~~~-g~~~~~~~~g~~~~~~l~~~l 134 (157)
+.+.||.++|++++=.+ |+.. .|-|..-.+.+.+++
T Consensus 172 A~~~Gv~GVP~fvv~~~~~~~e--~fwG~Drl~~~~~~l 208 (209)
T cd03021 172 ALKYGAFGLPWIVVTNDKGKTE--MFFGSDRFEQVADFL 208 (209)
T ss_pred HHHcCCCCCCEEEEEcCCCCcc--ceecCCcHHHHHHHh
Confidence 35579999999977442 3212 366655555555443
No 337
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=29.71 E-value=44 Score=23.59 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=20.2
Q ss_pred CCCceeecCcccHHHhhccCCeEEEEEec
Q psy12669 25 NNSQVIELDTDNVDYVRDNYDFVLILFYV 53 (157)
Q Consensus 25 ~~~~v~~l~~~~~~~~~~~~~~~lv~f~~ 53 (157)
+....--++++.|+++...++|++..|++
T Consensus 80 ~~~hPhglsd~~Fd~lFT~DkPViFafHG 108 (203)
T PF09363_consen 80 PSEHPHGLSDEEFDALFTKDKPVIFAFHG 108 (203)
T ss_dssp TTT-TTS--HHHHHHHH-SSS-EEEEESS
T ss_pred CCCCCCcCCHHHHHHhcCCCCCEEEEcCC
Confidence 34566778999999999999999999976
No 338
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=29.48 E-value=42 Score=22.24 Aligned_cols=16 Identities=13% Similarity=0.490 Sum_probs=13.6
Q ss_pred hhhHhhCCCCCCCeEE
Q psy12669 94 ESVCEDYNIVKYPTVK 109 (157)
Q Consensus 94 ~~~~~~~~i~~~P~~~ 109 (157)
.+++++++++.||.++
T Consensus 121 ddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLI 136 (142)
T ss_pred HHHHHHhCCCcccEEe
Confidence 4888999999999764
No 339
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=29.12 E-value=2.5e+02 Score=21.11 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=59.9
Q ss_pred ceeecCcccHHH-----hhccCCeEEEE---EecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhh
Q psy12669 28 QVIELDTDNVDY-----VRDNYDFVLIL---FYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCED 99 (157)
Q Consensus 28 ~v~~l~~~~~~~-----~~~~~~~~lv~---f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~ 99 (157)
...+|+..+=+. ++..+.++++. |.|-.--.=++....+.++.+.+ +..+.|+.-|.++.-.++.
T Consensus 132 yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l------~kTivfVTHDidEA~kLad- 204 (309)
T COG1125 132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL------GKTIVFVTHDIDEALKLAD- 204 (309)
T ss_pred CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh------CCEEEEEecCHHHHHhhhc-
Confidence 345566554442 34445555554 77766555556666777777777 5778999999988877776
Q ss_pred CCCCCCCeEEEEecCccceeeeccc--cCHHHHHHHHHHHcCCC
Q psy12669 100 YNIVKYPTVKIMRHGSIEKLEYRRE--RTVEALVKYVREELMDP 141 (157)
Q Consensus 100 ~~i~~~P~~~~~~~g~~~~~~~~g~--~~~~~l~~~l~~~~~~~ 141 (157)
.+.+++.|+.+. |..+ .-...=.+|+...++..
T Consensus 205 -------ri~vm~~G~i~Q--~~~P~~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 205 -------RIAVMDAGEIVQ--YDTPDEILANPANDFVEDFFGES 239 (309)
T ss_pred -------eEEEecCCeEEE--eCCHHHHHhCccHHHHHHHhccc
Confidence 477888887764 4322 11222345566655543
No 340
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=27.49 E-value=80 Score=17.03 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHhhh
Q psy12669 3 PCRLAAFSVLILVLSDVV 20 (157)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~ 20 (157)
||++.++..+++++.-..
T Consensus 1 MRTL~LLaAlLLlAlqaQ 18 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQ 18 (52)
T ss_pred CcHHHHHHHHHHHHHHHh
Confidence 466777666555554333
No 341
>PRK13620 psbV cytochrome c-550; Provisional
Probab=27.39 E-value=15 Score=25.98 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=7.7
Q ss_pred cCCChHHHh
Q psy12669 53 VKWCRFSVA 61 (157)
Q Consensus 53 ~~~C~~C~~ 61 (157)
..||..|+-
T Consensus 112 ~~~Ca~CHV 120 (215)
T PRK13620 112 AYACGQCHV 120 (215)
T ss_pred HhhhhhccC
Confidence 889999993
No 342
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=27.28 E-value=1.7e+02 Score=18.48 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=53.7
Q ss_pred HHhhccCCeEEEEEe-cCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC-Ch-----------hhHhhCCCCC
Q psy12669 38 DYVRDNYDFVLILFY-VKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD-YE-----------SVCEDYNIVK 104 (157)
Q Consensus 38 ~~~~~~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~-----------~~~~~~~i~~ 104 (157)
++..-.+++++| |- ++.-+.-+.....+.+....+. +.++.++.+--+. .. .+.++|++..
T Consensus 4 ~~~~w~~R~lvv-~aps~~d~~~~~q~~~L~~~~~~l~-----eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~ 77 (118)
T PF13778_consen 4 DQFRWKNRLLVV-FAPSADDPRYQQQLEELQNNRCGLD-----ERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPP 77 (118)
T ss_pred hHhcCcCceEEE-ECCCCCCHHHHHHHHHHHhhhhccc-----cCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCC
Confidence 334445555433 33 3344555555666666444443 3456666653332 22 6677888653
Q ss_pred -CCeEEEE-ecCccceeeeccccCHHHHHHHHHH
Q psy12669 105 -YPTVKIM-RHGSIEKLEYRRERTVEALVKYVRE 136 (157)
Q Consensus 105 -~P~~~~~-~~g~~~~~~~~g~~~~~~l~~~l~~ 136 (157)
.-++++. ++|+... ++.+..+.+.|-..|..
T Consensus 78 ~~f~~vLiGKDG~vK~-r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 78 GGFTVVLIGKDGGVKL-RWPEPIDPEELFDTIDA 110 (118)
T ss_pred CceEEEEEeCCCcEEE-ecCCCCCHHHHHHHHhC
Confidence 3345555 5776666 89999999999887754
No 343
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.25 E-value=2.4e+02 Score=20.42 Aligned_cols=50 Identities=6% Similarity=0.150 Sum_probs=29.9
Q ss_pred ccHHHhhccCCeEEEE--EecC----CChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEe
Q psy12669 35 DNVDYVRDNYDFVLIL--FYVK----WCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89 (157)
Q Consensus 35 ~~~~~~~~~~~~~lv~--f~~~----~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd 89 (157)
.++.++..+..-.+|+ ++.| -|+-|......|+-....+. ..++.++.|.
T Consensus 64 ~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~-----~~dv~lv~Vs 119 (247)
T COG4312 64 KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLE-----HHDVTLVAVS 119 (247)
T ss_pred hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHh-----hcCceEEEEe
Confidence 3455555433333333 2344 59999999999966655554 3346666654
No 344
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=26.20 E-value=1.3e+02 Score=18.83 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=9.5
Q ss_pred CchhhHHHHHHHHHHHHhhhcc
Q psy12669 1 MLPCRLAAFSVLILVLSDVVVG 22 (157)
Q Consensus 1 m~~~~l~~~~~~~~~~~~~~~~ 22 (157)
|++|++..+ ++.++++++..+
T Consensus 3 ~~mk~~~~l-~~~l~LS~~s~~ 23 (104)
T PRK14864 3 MVMRRFASL-LLTLLLSACSAL 23 (104)
T ss_pred hHHHHHHHH-HHHHHHhhhhhc
Confidence 456664443 333444444333
No 345
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=25.98 E-value=86 Score=18.69 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHHH
Q psy12669 3 PCRLAAFSVLILVL 16 (157)
Q Consensus 3 ~~~l~~~~~~~~~~ 16 (157)
.||++++.++...+
T Consensus 2 aRRlwiLslLAVtL 15 (100)
T PF05984_consen 2 ARRLWILSLLAVTL 15 (100)
T ss_pred chhhHHHHHHHHHH
Confidence 46777766554443
No 346
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=25.95 E-value=99 Score=17.74 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=23.9
Q ss_pred EecCccceeeeccccCHHHHHHHHHHHcCC
Q psy12669 111 MRHGSIEKLEYRRERTVEALVKYVREELMD 140 (157)
Q Consensus 111 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~ 140 (157)
+++|..+..+|....+..++.+|+......
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~ 42 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFS 42 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCC
Confidence 468887765888889999999999877543
No 347
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=25.86 E-value=44 Score=21.91 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=9.5
Q ss_pred CChHHHhhhHHH
Q psy12669 55 WCRFSVAMLPTF 66 (157)
Q Consensus 55 ~C~~C~~~~~~~ 66 (157)
=|+.|+++..+|
T Consensus 87 PCG~CRQ~i~Ef 98 (134)
T COG0295 87 PCGACRQVLAEF 98 (134)
T ss_pred CcHHHHHHHHHh
Confidence 399999987655
No 348
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=25.86 E-value=1e+02 Score=18.09 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=21.1
Q ss_pred CeEEEEecCccceeeeccccCHHHHHHHHHHHc
Q psy12669 106 PTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138 (157)
Q Consensus 106 P~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 138 (157)
.++.+|..|+.+ ..|..+.+++.+-+.+..
T Consensus 50 ~t~~IF~sGki~---itGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 50 ATVLIFSSGKIV---ITGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp EEEEEETTSEEE---EEEESSHHHHHHHHHHHH
T ss_pred EEEEEEcCCEEE---EEecCCHHHHHHHHHHHH
Confidence 577888888766 467777777777666543
No 349
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=25.50 E-value=1.2e+02 Score=17.67 Aligned_cols=28 Identities=7% Similarity=0.134 Sum_probs=22.8
Q ss_pred ecCccceeeeccccCHHHHHHHHHHHcC
Q psy12669 112 RHGSIEKLEYRRERTVEALVKYVREELM 139 (157)
Q Consensus 112 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 139 (157)
++|+.+..+|....+..++.+|+....+
T Consensus 12 pdG~r~~~rF~~~~tv~~l~~~v~~~~~ 39 (79)
T cd01770 12 ADGKRLVQKFNSSHRVSDVRDFIVNARP 39 (79)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHhCC
Confidence 5887775588888889999999998653
No 350
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=24.54 E-value=2.5e+02 Score=19.45 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=12.6
Q ss_pred EecCCChHHHhhhHHHHHH
Q psy12669 51 FYVKWCRFSVAMLPTFDEV 69 (157)
Q Consensus 51 f~~~~C~~C~~~~~~~~~~ 69 (157)
++...|++|.+..-.+...
T Consensus 3 y~~~~sp~~~kvr~~L~~~ 21 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLK 21 (209)
T ss_pred ecCCCCChHHHHHHHHHHc
Confidence 5567799998766544433
No 351
>PRK11622 hypothetical protein; Provisional
Probab=24.47 E-value=3.4e+02 Score=21.06 Aligned_cols=8 Identities=0% Similarity=0.123 Sum_probs=5.6
Q ss_pred ccHHHhhc
Q psy12669 35 DNVDYVRD 42 (157)
Q Consensus 35 ~~~~~~~~ 42 (157)
.++++++.
T Consensus 27 ~~~~~~~~ 34 (401)
T PRK11622 27 KDWQQILE 34 (401)
T ss_pred CCHHHHHH
Confidence 56888764
No 352
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=24.12 E-value=63 Score=20.55 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=12.2
Q ss_pred HhhCCCCCCCeEEEE
Q psy12669 97 CEDYNIVKYPTVKIM 111 (157)
Q Consensus 97 ~~~~~i~~~P~~~~~ 111 (157)
+..+||+.+|.+++=
T Consensus 76 Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD 90 (114)
T ss_pred HHHhCccccCEEEEc
Confidence 567999999998654
No 353
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.36 E-value=1.3e+02 Score=20.96 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=8.3
Q ss_pred CcccHHHhhccCCe
Q psy12669 33 DTDNVDYVRDNYDF 46 (157)
Q Consensus 33 ~~~~~~~~~~~~~~ 46 (157)
+..++++.+++..|
T Consensus 43 TaaDLdk~Ls~~gP 56 (210)
T COG5661 43 TAADLDKALSKSGP 56 (210)
T ss_pred cHHHHHHHHHhcCC
Confidence 34566667766555
No 354
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=23.04 E-value=1.9e+02 Score=20.28 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHhhhc
Q psy12669 5 RLAAFSVLILVLSDVVV 21 (157)
Q Consensus 5 ~l~~~~~~~~~~~~~~~ 21 (157)
++++++ +++++.+++.
T Consensus 3 ~i~~l~-l~lll~~C~~ 18 (216)
T PF11153_consen 3 KILLLL-LLLLLTGCST 18 (216)
T ss_pred HHHHHH-HHHHHHhhcC
Confidence 343333 3334444443
No 355
>PHA02131 hypothetical protein
Probab=22.85 E-value=47 Score=18.11 Aligned_cols=22 Identities=0% Similarity=0.080 Sum_probs=16.5
Q ss_pred CCCCCCeEEEEecCccceeeec
Q psy12669 101 NIVKYPTVKIMRHGSIEKLEYR 122 (157)
Q Consensus 101 ~i~~~P~~~~~~~g~~~~~~~~ 122 (157)
.-.++.+.+.|++|+.+.-.|.
T Consensus 25 ~~~g~~c~imfk~~~v~dctfk 46 (70)
T PHA02131 25 YRFGISCWIMFKNDQVIDCTFK 46 (70)
T ss_pred eecceEEEEEEcCCCEEEeeec
Confidence 4457789999999998864443
No 356
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.73 E-value=2.1e+02 Score=20.65 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=21.9
Q ss_pred eEEEEEec-CCChHHHhhhHHHHHHHHHH
Q psy12669 46 FVLILFYV-KWCRFSVAMLPTFDEVLVTL 73 (157)
Q Consensus 46 ~~lv~f~~-~~C~~C~~~~~~~~~~~~~~ 73 (157)
.+-|++|+ .-||.|-.-.+.++++...+
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~ 33 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEY 33 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhc
Confidence 34455555 56999999999999998887
No 357
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.65 E-value=47 Score=18.31 Aligned_cols=13 Identities=8% Similarity=0.191 Sum_probs=9.6
Q ss_pred CCChHHHhhhHHH
Q psy12669 54 KWCRFSVAMLPTF 66 (157)
Q Consensus 54 ~~C~~C~~~~~~~ 66 (157)
|-|+.|+++...+
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 4599999886543
No 358
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=22.45 E-value=93 Score=21.38 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=26.1
Q ss_pred cccCCCCceeecCcccHHHhh--ccCCeEEEEEecCC
Q psy12669 21 VGSVNNSQVIELDTDNVDYVR--DNYDFVLILFYVKW 55 (157)
Q Consensus 21 ~~~~~~~~v~~l~~~~~~~~~--~~~~~~lv~f~~~~ 55 (157)
+++....+...++.+++=+.+ ..++|++|.|--..
T Consensus 27 CIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G 63 (180)
T PF14097_consen 27 CISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKG 63 (180)
T ss_pred EEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 456666788889999888766 36679999996543
No 359
>PHA02091 hypothetical protein
Probab=22.36 E-value=1.2e+02 Score=16.85 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=15.2
Q ss_pred cCCeEEEEEecCC-----ChHHHhhh
Q psy12669 43 NYDFVLILFYVKW-----CRFSVAML 63 (157)
Q Consensus 43 ~~~~~lv~f~~~~-----C~~C~~~~ 63 (157)
...-|++++|.|- |..|+++.
T Consensus 43 d~~~w~lnvygp~~~~~i~~~~~~~f 68 (72)
T PHA02091 43 DRGMWTLNVYGPLGKAQICRDQQKFF 68 (72)
T ss_pred CCceEEEEeecccchhhcchhHHhhh
Confidence 3456999999985 67777654
No 360
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=22.22 E-value=93 Score=15.65 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=18.7
Q ss_pred eeeccccCHHHHHHHHHHHcCCCcee
Q psy12669 119 LEYRRERTVEALVKYVREELMDPTIE 144 (157)
Q Consensus 119 ~~~~g~~~~~~l~~~l~~~~~~~~~~ 144 (157)
+.|+|=.+.++|.+|++..-+..+..
T Consensus 12 ~~fSgHad~~~L~~~i~~~~p~~vil 37 (43)
T PF07521_consen 12 IDFSGHADREELLEFIEQLNPRKVIL 37 (43)
T ss_dssp SGCSSS-BHHHHHHHHHHHCSSEEEE
T ss_pred EeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 35788899999999999995543433
No 361
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=22.01 E-value=2.4e+02 Score=20.40 Aligned_cols=25 Identities=4% Similarity=0.124 Sum_probs=16.9
Q ss_pred CceeecCcccHHHhhccCCeEEEEE
Q psy12669 27 SQVIELDTDNVDYVRDNYDFVLILF 51 (157)
Q Consensus 27 ~~v~~l~~~~~~~~~~~~~~~lv~f 51 (157)
.++..++-+++++-+...++..|.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~p~aViF 68 (237)
T TIGR01672 44 APIHWISVAQIENSLEGRPPIAVSF 68 (237)
T ss_pred CCeeEEEHHHHHHhcCCCCCeEEEE
Confidence 3567777777877777777655555
No 362
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=21.88 E-value=35 Score=22.53 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=11.3
Q ss_pred CChHHHhhhHHHHH
Q psy12669 55 WCRFSVAMLPTFDE 68 (157)
Q Consensus 55 ~C~~C~~~~~~~~~ 68 (157)
.|++|++..|.+--
T Consensus 11 ~CPhCRQ~ipALtL 24 (163)
T TIGR02652 11 RCPHCRQNIPALTL 24 (163)
T ss_pred cCchhhcccchhee
Confidence 49999999987643
No 363
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=21.77 E-value=76 Score=20.15 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.4
Q ss_pred HhhCCCCCCCeEEE
Q psy12669 97 CEDYNIVKYPTVKI 110 (157)
Q Consensus 97 ~~~~~i~~~P~~~~ 110 (157)
+-.+||+.+|.+++
T Consensus 77 Aw~lGi~k~PAVV~ 90 (113)
T TIGR03757 77 AWQLGVTKIPAVVV 90 (113)
T ss_pred HHHcCCccCCEEEE
Confidence 45799999998854
No 364
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=21.76 E-value=34 Score=22.54 Aligned_cols=14 Identities=14% Similarity=0.365 Sum_probs=11.3
Q ss_pred CChHHHhhhHHHHH
Q psy12669 55 WCRFSVAMLPTFDE 68 (157)
Q Consensus 55 ~C~~C~~~~~~~~~ 68 (157)
.|++|++..|.+--
T Consensus 8 ~CPhCRq~ipALtL 21 (161)
T PF09654_consen 8 QCPHCRQTIPALTL 21 (161)
T ss_pred cCchhhcccchhee
Confidence 49999999987643
No 365
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.09 E-value=77 Score=22.37 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=6.5
Q ss_pred eEEEEEecCCChH
Q psy12669 46 FVLILFYVKWCRF 58 (157)
Q Consensus 46 ~~lv~f~~~~C~~ 58 (157)
.++=.+|..-.|.
T Consensus 78 ~vLGk~~k~aspe 90 (202)
T COG2854 78 LVLGKYYKTASPE 90 (202)
T ss_pred HHhccccccCCHH
Confidence 3455556554443
No 366
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=20.46 E-value=3.4e+02 Score=19.56 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=42.5
Q ss_pred CCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCC-hhhHhhCCCCCCCeEEEEecCccceeeeccccCHHHHHH
Q psy12669 54 KWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDY-ESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVK 132 (157)
Q Consensus 54 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~~P~~~~~~~g~~~~~~~~g~~~~~~l~~ 132 (157)
+.|++|++..-.+... +-.+.+..+|..+. +++.+......+|++.. +|..+ .+...|..
T Consensus 17 ~~cp~~~rv~i~L~ek----------gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l-------~ES~aI~e 77 (236)
T TIGR00862 17 GNCPFSQRLFMILWLK----------GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVK-------TDVNKIEE 77 (236)
T ss_pred CCCHhHHHHHHHHHHc----------CCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEe-------ecHHHHHH
Confidence 4589999888666541 23466777787654 45555445567998864 44322 34567777
Q ss_pred HHHHHcCC
Q psy12669 133 YVREELMD 140 (157)
Q Consensus 133 ~l~~~~~~ 140 (157)
++.+..++
T Consensus 78 YL~e~~~~ 85 (236)
T TIGR00862 78 FLEETLCP 85 (236)
T ss_pred HHHHHcCC
Confidence 77766543
No 367
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=20.14 E-value=1.9e+02 Score=16.50 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=34.5
Q ss_pred ChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCCChhhHhhCCCCCCCeEEEEecCccceeee--ccccCHHHHHHH
Q psy12669 56 CRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEY--RRERTVEALVKY 133 (157)
Q Consensus 56 C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~--~g~~~~~~l~~~ 133 (157)
|..|. ..+....++..+.+.+ .+++.-+.... ...-++-++-+|+.+..+. .|..+.+.+.+.
T Consensus 8 C~~C~-~~~~a~~l~~~l~~~f--p~~~~~v~~~~------------~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~ 72 (76)
T PF10262_consen 8 CTSCG-YRPRALELAQELLQTF--PDRIAEVELSP------------GSTGAFEVTVNGELIFSKLESGRFPDPDEIVQL 72 (76)
T ss_dssp ETTTT-CHHHHHHHHHHHHHHS--TTTCSEEEEEE------------ESTT-EEEEETTEEEEEHHHHTSSS-HHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHHC--CCcceEEEEEe------------ccCCEEEEEEccEEEEEehhcCCCCCHHHHHHH
Confidence 55565 4555666666666555 33221111111 1123566777787775333 245778888887
Q ss_pred HHH
Q psy12669 134 VRE 136 (157)
Q Consensus 134 l~~ 136 (157)
|.+
T Consensus 73 I~~ 75 (76)
T PF10262_consen 73 IRD 75 (76)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 368
>PRK12411 cytidine deaminase; Provisional
Probab=20.01 E-value=64 Score=21.00 Aligned_cols=12 Identities=8% Similarity=0.157 Sum_probs=9.6
Q ss_pred CChHHHhhhHHH
Q psy12669 55 WCRFSVAMLPTF 66 (157)
Q Consensus 55 ~C~~C~~~~~~~ 66 (157)
=|+.|+++..+|
T Consensus 85 PCG~CRQ~l~Ef 96 (132)
T PRK12411 85 PCGACRQVMVEL 96 (132)
T ss_pred CchhHHHHHHHh
Confidence 499999997655
No 369
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=20.01 E-value=1.8e+02 Score=16.11 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=29.8
Q ss_pred EEEecCCChHHHhhhHHHHHHHHHHHhcCCCCCceEEEEEeCCC----ChhhHhhCCCCCCCeEE
Q psy12669 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDD----YESVCEDYNIVKYPTVK 109 (157)
Q Consensus 49 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~P~~~ 109 (157)
..|+.+.++.|++..-.+...... +....++..+ .+++.+......+|++.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~----------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 56 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIP----------FEECPIDLRKGEQLTPEFKKINPFGKVPAIV 56 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCC----------cEEEEecCCCCCcCCHHHHHhCcCCCCCEEE
Confidence 356777888888776544443322 3444455432 23455555667899885
Done!