RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12669
(157 letters)
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 108 bits (270), Expect = 7e-29
Identities = 45/131 (34%), Positives = 76/131 (58%)
Query: 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI 85
S++ LDT+N+D + +N D L+ FY WCRFS + P F+E + P +
Sbjct: 4 GSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVF 63
Query: 86 TKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEI 145
+++CD + + + Y I KYPT+K+ R+G + K EYR +R+V+AL Y+R++ DP EI
Sbjct: 64 ARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEI 123
Query: 146 PEEENLVNVEN 156
+ + ++
Sbjct: 124 RDLAEITTLDR 134
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 92.0 bits (229), Expect = 5e-25
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 25 NNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
V+ L N + ++L+ FY WC A+ P + + L E +
Sbjct: 5 EEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGK---LKAEGSEIR 61
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHG-SIEKLEYRRERTVEALVKYVREEL 138
+ K++ + + + Y + YPT+K R+G + EY R + +V ++++
Sbjct: 62 LAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 96.1 bits (238), Expect = 4e-24
Identities = 30/133 (22%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 25 NNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
+S V++L TD+ + ++D VL F+ WC M P + + TL+ +
Sbjct: 12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-----KNIT 66
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEK-LEYRRERTVEALVKYVREELMDPTI 143
+ +I+C + + +C ++NI +P++KI ++ + ++Y RT EA+V+++ ++
Sbjct: 67 LAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVA 126
Query: 144 EIPEEENLVNVEN 156
+ + + E
Sbjct: 127 VVADLPAYLANET 139
Score = 83.4 bits (205), Expect = 1e-19
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 23 SVNNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR 81
+S V +L N D V D VL+L+Y WC + PT+ E+ T N
Sbjct: 354 ENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATS--- 410
Query: 82 KFAITKINCDDYESVCEDYNIVKYPTVKIMRHGS-IEKLEYRRERTVEALVKYVREELMD 140
I K++ + + I YPT+ + G E + Y+ R++++L +++E
Sbjct: 411 DVLIAKLDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHF 468
Query: 141 PTIEIPEEE 149
E
Sbjct: 469 DVDGKALYE 477
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 89.8 bits (223), Expect = 7e-24
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 25 NNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
+ V L+ N D + D VL+ FY WC P ++++ TL + P A
Sbjct: 15 EENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDP---PIA 71
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIE 144
+ KI+ + +++ YPT+KI++ G + ++Y RT E +V VRE
Sbjct: 72 VAKIDATSASMLASKFDVSGYPTIKILKKG--QAVDYDGSRTQEEIVAKVREVSQPDWTP 129
Query: 145 IPE 147
PE
Sbjct: 130 PPE 132
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 91.4 bits (227), Expect = 1e-23
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 25 NNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
+ V+ L+ N D + D VL+ FY WC P ++++ L + P
Sbjct: 13 EENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDP---PIP 69
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIE 144
+ KI+ + +++ YPT+KI++ G + ++Y RT E +V VRE
Sbjct: 70 VAKIDATSASVLASRFDVSGYPTIKILKKG--QAVDYEGSRTQEEIVAKVREVSQPDWTP 127
Query: 145 IPEEENLVNVEN 156
PE ++ EN
Sbjct: 128 PPEVTLVLTKEN 139
Score = 81.0 bits (200), Expect = 1e-19
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 25 NNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
+ L +N D V ++ D +L+ FY WC + P +++ L P
Sbjct: 128 PPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSP---PIP 184
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREE 137
+ K++ + + +++ YPT+KI R G +Y R +V Y+ E+
Sbjct: 185 LAKVDATAETDLAKRFDVSGYPTLKIFRKG--RPYDYNGPREKYGIVDYMIEQ 235
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 85.5 bits (212), Expect = 2e-22
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 23 SVNNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR 81
S ++ VIEL D+ D V D+ D ++ FY WC + P + +
Sbjct: 3 SGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKV 62
Query: 82 KFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMD- 140
K A ++ + + Y I +PT+KI + G ++Y RT +V + D
Sbjct: 63 KLA--AVDATVNQVLASRYGIRGFPTIKIFQKGE-SPVDYDGGRTRSDIVSRALDLFSDN 119
Query: 141 -PTIEIPEEE 149
P E+ E
Sbjct: 120 APPPELLESG 129
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 84.8 bits (210), Expect = 4e-22
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 25 NNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
++ VIEL N + V + L+ FY WC + P + + L +++
Sbjct: 15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVK----- 69
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
+ +N D ++S+ Y + +PT+KI + +Y+ RT EA+V L
Sbjct: 70 -VGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSAL 123
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 89.0 bits (220), Expect = 6e-22
Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 5/134 (3%)
Query: 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINL--LPEPRKF 83
+V+ L N V YD VL L+Y + F + L + + E +
Sbjct: 10 KDRVVSLTEKNFKQVLKKYD-VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDI 68
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
++ + + + ++ +++ +E+ E + LV+++ + + DP
Sbjct: 69 GFVMVDAKKEAKLAKKLGFDEEGSLYVLKGD--RTIEFDGEFAADVLVEFLLDLIEDPVE 126
Query: 144 EIPEEENLVNVENC 157
I + + E
Sbjct: 127 IINSKLEVQAFERI 140
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 83.1 bits (206), Expect = 1e-21
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI 85
S V+ L +N D I FY WC + PT++E+ L I
Sbjct: 4 GSTVLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLA---GVKI 59
Query: 86 TKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREE 137
+++C ++C Y++ YPT+ + R G + E+ R +++L ++V +
Sbjct: 60 AEVDCTAERNICSKYSVRGYPTLLLFRGGK-KVSEHSGGRDLDSLHRFVLSQ 110
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 87.6 bits (216), Expect = 4e-21
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 27 SQVIELDTDNVDYV---RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
S V+EL DN + + +L+ F+ WC + + P ++ L
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG------IV 54
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
+ K++C + C Y + YPT+KI R G E Y RT + +V +++++ ++
Sbjct: 55 PLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE-EAGAYDGPRTADGIVSHLKKQAGPASV 113
Query: 144 EIPEEEN 150
+ EE
Sbjct: 114 PLRTEEE 120
Score = 80.3 bits (197), Expect = 1e-18
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
Query: 38 DYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVC 97
+ V + VLI FY WC + P + E L L + I K++ + V
Sbjct: 364 EIVNNENKDVLIEFYAPWCGHCKNLEPKYKE----LGEKLSKDPNIVIAKMDATAND-VP 418
Query: 98 EDYNIVKYPTVKIMRHGS-IEKLEYRRERTVEALVKYVREELMDPTIEIPEEEN 150
Y + +PT+ + +Y R + + Y++ E +P + E+
Sbjct: 419 SPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPVIQEEKPK 472
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 85.4 bits (211), Expect = 1e-20
Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
Query: 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWC------RFSVAMLPTFDEVLVTLINLLPEP 80
+VI ++ N V Y+ + +L++ R + L E
Sbjct: 13 DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVL-----ED 67
Query: 81 RKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMD 140
+ ++ + +V + + + ++ + + E +EY E + + LV+++ + L D
Sbjct: 68 KGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKED--EVIEYDGEFSADTLVEFLLDVLED 125
Query: 141 PTIEIPEEENLVNVENC 157
P I E L EN
Sbjct: 126 PVELIEGERELQAFENI 142
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 78.9 bits (195), Expect = 6e-20
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 27 SQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI 85
S+V+EL + D V D V +L+YV W R SVA + +D+ L + F
Sbjct: 15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDD-LSMSQSQKRNHLTFVA 73
Query: 86 TKINCDDYESVCEDYNIVKYPTVKIMRHG-SIEKLEYRRERTVEALVKYVRE 136
+I+ + Y V E + +PT++ E EY +R + + +V +
Sbjct: 74 ARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 78.1 bits (193), Expect = 1e-19
Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 9/127 (7%)
Query: 23 SVNNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRK 82
S ++ V + +N + + +I FY WC + P ++ E +
Sbjct: 3 SGSSGNVRVITDENWRELLE--GDWMIEFYAPWCPACQNLQPEWESFAEWG-----EDLE 55
Query: 83 FAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPT 142
I K++ + + + I PT+ + G E Y+ RT + + ++ ++
Sbjct: 56 VNIAKVDVTEQPGLSGRFIINALPTIYHCKDG--EFRRYQGPRTKKDFINFISDKEWKSI 113
Query: 143 IEIPEEE 149
+
Sbjct: 114 EPVSSWF 120
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 79.8 bits (196), Expect = 7e-19
Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 21/149 (14%)
Query: 25 NNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
++ + EL + D + + L+ FY WC + TF + L +
Sbjct: 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRK----AAKRLDGVVQV 70
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKL----------------EYRRERTV 127
A + + +++C Y++ +PT+ + R I+ Y RT+
Sbjct: 71 AAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTL 130
Query: 128 EALVKYVREELMDPTIEIPEEENLVNVEN 156
+V + + + + L ++
Sbjct: 131 APIVDFSLSRIRSYVKKFVRIDTLGSLLR 159
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 76.7 bits (188), Expect = 3e-17
Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 27 SQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI 85
I+L + V ++ FY W S P F+ + + K
Sbjct: 657 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG------KVRA 710
Query: 86 TKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKL---EYRRERTVEALVKYVREEL--MD 140
K++C Y C+ I YP+VK+ ++ +K E R + + + +L +
Sbjct: 711 GKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQ 770
Query: 141 PTIEIPEEE 149
++ ++E
Sbjct: 771 SQVKRNKDE 779
Score = 76.3 bits (187), Expect = 4e-17
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 10/128 (7%)
Query: 21 VGSVNNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEP 80
NS V L N + + L+ F+ W S A+LP + L
Sbjct: 434 AKESVNSHVTTLGPQNFP--ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYG----- 486
Query: 81 RKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMD 140
+ + ++C +E +C YNI YPT + SI EY + E +++++ +
Sbjct: 487 -QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIH--EYEGHHSAEQILEFIEDLRNP 543
Query: 141 PTIEIPEE 148
+ +
Sbjct: 544 SVVSLTPS 551
Score = 75.6 bits (185), Expect = 8e-17
Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI 85
+ ++I L+ D ++ + + FY S + PT+ E + I
Sbjct: 115 DPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEV------DGLLRI 168
Query: 86 TKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEI 145
+NC D +C + YP++ I R G +Y +R+ E+LV + + + E+
Sbjct: 169 GAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV-KYNGDRSKESLVAFAMQHVRSTVTEL 227
Query: 146 PEEE 149
Sbjct: 228 STGN 231
Score = 67.5 bits (164), Expect = 4e-14
Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 13/131 (9%)
Query: 26 NSQVIELDTDNVDYV---RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRK 82
N V+ L + + R + + ++ FY W S ++P + + TL
Sbjct: 542 NPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG------L 595
Query: 83 FAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRR----ERTVEALVKYVREEL 138
+ ++C Y S C N+ +YP ++ S + +Y R +L + L
Sbjct: 596 INVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL 655
Query: 139 MDPTIEIPEEE 149
+I++ +
Sbjct: 656 PQASIDLTPQT 666
Score = 47.1 bits (111), Expect = 5e-07
Identities = 13/120 (10%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
+ + + + + + D L + + + A P ++ L N +
Sbjct: 332 HNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLKN-----EHIQVV 386
Query: 87 KINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLE-YRRERTVEALVKYVREELMDPTIEI 145
+ +C +C D V P++ + + ++ E + ++ + ++ + +E + +
Sbjct: 387 RFDCSSAPGICSDLY-VFQPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTL 445
Score = 45.9 bits (108), Expect = 1e-06
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 7/131 (5%)
Query: 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
S V EL T N + + + + +C L + + ++ + L
Sbjct: 222 STVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGM--LDGLVNVG-- 277
Query: 87 KINCDDYESVCEDYNIVKYPTV---KIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
++CD +S+C+ + T EK +++A Y+ P
Sbjct: 278 WVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDF 337
Query: 144 EIPEEENLVNV 154
E+ L +
Sbjct: 338 ELLSANQLEDR 348
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 71.6 bits (176), Expect = 6e-17
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 8/127 (6%)
Query: 25 NNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
++ V + D V D VLI FY WC + P + L +
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTS----LGKKYKGQKDL 60
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLE--YRRERTVEALVKYVREELMDP 141
I K++ + + Y + +PT+ G + R +E L K++ E
Sbjct: 61 VIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHA-TK 119
Query: 142 TIEIPEE 148
EE
Sbjct: 120 RSRTKEE 126
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 69.7 bits (171), Expect = 2e-16
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 25 NNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
+ V + N + V D+ VLI FY WC A+ P ++E+ +
Sbjct: 5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAK-SEFKDRV 63
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEK-LEYRRERTVEALVKYVREE 137
I K++ + I +PT+K+ G+ + + Y RTVE L+K++ E
Sbjct: 64 VIAKVDATANDV---PDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 68.9 bits (168), Expect = 4e-15
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 25 NNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
+ + L D V V + + F+ WC +A PT+ + +
Sbjct: 10 PSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDV---KAWRPAL 66
Query: 84 AITKINCDDYE--SVCEDYNIVKYPTVKIMRHGSI---EKLEYRRERTVEALVKYVREEL 138
+ ++C + +VC D+NI +PTV+ + + V+ L + + + L
Sbjct: 67 YLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDAL 126
Query: 139 MDPTIEIPEEE 149
P
Sbjct: 127 ESHHDTWPPAC 137
Score = 42.3 bits (99), Expect = 1e-05
Identities = 9/120 (7%), Positives = 37/120 (30%), Gaps = 12/120 (10%)
Query: 17 SDVVVGSVNNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINL 76
D + + L+ + + R+N +++ ++F + + +
Sbjct: 130 HDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLSQHK------ 183
Query: 77 LPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVRE 136
A+ ++ + +V + + +P+ ++ + Y++
Sbjct: 184 -----GVAVRRV-LNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQR 237
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 68.6 bits (167), Expect = 2e-14
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 25 NNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
+ V L N + D V + FY WC + P +D+ L +
Sbjct: 247 DKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDK----LGETYKDHENI 302
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEK-LEYRRERTVEALVKYVRE 136
I K++ E E + +PT+K + ++Y ERT++ K++
Sbjct: 303 VIAKMDSTANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLES 354
Score = 48.5 bits (115), Expect = 2e-07
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 9/127 (7%)
Query: 29 VIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITK 87
VIE ++LF K L F F
Sbjct: 119 VIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAA----ESFKGKILFIFID 174
Query: 88 INCDDYESVCEDYNI--VKYPTVKIMRHGSIEK--LEYRRERTVEALVKYVREELMDPTI 143
+ D + + E + + + P V+++ E T E + ++ L
Sbjct: 175 SDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK 234
Query: 144 EIPEEEN 150
+
Sbjct: 235 PHLMSQE 241
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 68.1 bits (165), Expect = 2e-14
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 5/135 (3%)
Query: 25 NNSQVIELDTDNVD--YVRDNYDFVLILFYVKWCRFSVAMLPTFDEV--LVTLINLLPEP 80
+S V++L D+ + ++LFY C TF + + + +
Sbjct: 21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDAL 80
Query: 81 RKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG-SIEKLEYRRERTVEALVKYVREELM 139
+ +NC +C Y+I P + S E ++E + +
Sbjct: 81 QIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEV 140
Query: 140 DPTIEIPEEENLVNV 154
D ++
Sbjct: 141 DELESEVRRLVNKHM 155
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 67.3 bits (163), Expect = 6e-14
Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 9/138 (6%)
Query: 25 NNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
++ + LD D+V V + + F+ WC ++A PT+ E+ + + P
Sbjct: 10 SSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRP---AL 66
Query: 84 AITKINCDDYE--SVCEDYNIVKYPTVKIMRHGSI---EKLEYRRERTVEALVKYVREEL 138
+ ++C + +VC ++NI +PTV+ + + V+ L + + L
Sbjct: 67 NLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDAL 126
Query: 139 MDPTIEIPEEENLVNVEN 156
P +
Sbjct: 127 ESHRDTWPPACPPLEPAK 144
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 65.4 bits (159), Expect = 9e-14
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 16/134 (11%)
Query: 29 VIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKI 88
+ LDT V FVL+ F ++ F L + ++
Sbjct: 7 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKR----LAENSASSDDLLVAEV 60
Query: 89 NCDDYES-----VCEDYNIVK--YPTVKIMRHGSIEK-LEYRRERTVEALVKYVREE--L 138
DY + E Y + K YP + R G E + Y V A+ ++++ +
Sbjct: 61 GISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVY 120
Query: 139 MDPTIEIPEEENLV 152
+ +P + L
Sbjct: 121 LGMPGCLPVYDALA 134
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 62.0 bits (151), Expect = 2e-13
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 27 SQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI 85
I+L + V ++ FY WC P F+ + + K
Sbjct: 3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG------KVRA 56
Query: 86 TKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKL---EYRRERTVEALVKYVREELMDPT 142
K++C Y C+ I YP+VK+ ++ +K E R + + + +L
Sbjct: 57 GKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQ 116
Query: 143 IEIPE 147
++
Sbjct: 117 SQVKR 121
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 60.1 bits (145), Expect = 7e-12
Identities = 16/125 (12%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 22 GSVNNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR 81
GSV + ++LD + + + + + ++ F + F + +
Sbjct: 11 GSVTCTGCVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKD-- 66
Query: 82 KFAITKINCDDYES-----VCEDYNIVK--YPTVKIMRHGS--IEKLEYRRERTVEALVK 132
I + DY + + Y + +P++ + + + +L + T++ L
Sbjct: 67 -LLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKA 125
Query: 133 YVREE 137
+V
Sbjct: 126 FVSAN 130
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 49.9 bits (119), Expect = 3e-08
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 48 LILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPT 107
+ FY C + PT+ E + LL I +NC D +C + YP+
Sbjct: 118 FVNFYSPGCSHCHDLAPTWREFAKEVDGLLR------IGAVNCGDDRMLCRMKGVNSYPS 171
Query: 108 VKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEI 145
+ I R G ++Y +R+ E+LV + + + E+
Sbjct: 172 LFIFRSGMA-AVKYNGDRSKESLVAFAMQHVRSTVTEL 208
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 42.9 bits (101), Expect = 4e-06
Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 13/127 (10%)
Query: 31 ELDTDNVD-YVRDNYD-FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKI 88
++ VD +++ D +L+ + E+L + +
Sbjct: 21 PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-----PQFDWQVAVA 75
Query: 89 NCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEE 148
+ + E++ + +N+ ++P + G + R LM ++ P
Sbjct: 76 DLEQSEAIGDRFNVRRFPATLVFTDGKL------RGALSGIHPWAELLTLMRSIVDTPAA 129
Query: 149 ENLVNVE 155
+ V +E
Sbjct: 130 QETVQLE 136
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 42.0 bits (99), Expect = 6e-06
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 23 SVNNSQVIELDT-----DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLL 77
+ QVI T + + ++ V++ F WC + P F + L
Sbjct: 12 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFAD-------LA 64
Query: 78 PEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
+ K++ D+ +SV D+ I PT ++ G
Sbjct: 65 KKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEG 101
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 40.4 bits (95), Expect = 3e-05
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 26 NSQVIELDT-----DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEP 80
QVI T ++ + + + +++ F WC + P F E L +
Sbjct: 3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAE-------LAKKF 55
Query: 81 RKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
K++ D+ ++V E++N+ PT ++ G
Sbjct: 56 PNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDG 89
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 40.4 bits (95), Expect = 3e-05
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 25 NNSQVIELDTDNV--DYVRDNYD-FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR 81
++ V ++++ + + D V++ F WC S + P F L +
Sbjct: 9 HHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHS-------LSEKYS 61
Query: 82 KFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
+++ DD + V + + PT + + G
Sbjct: 62 NVIFLEVDVDDCQDVASECEVKSMPTFQFFKKG 94
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 40.0 bits (94), Expect = 4e-05
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 23 SVNNSQVIELDTDN-----VDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLL 77
+ VI T + +D V+I F WC + P F E
Sbjct: 2 AAEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAE-------YA 54
Query: 78 PEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
+ K++ D+ + V E YN+ PT ++ G
Sbjct: 55 KKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDG 91
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 39.7 bits (93), Expect = 5e-05
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 23 SVNNSQVIELDTD-----NVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLL 77
+ VI + ++ V+I F WC + P F E
Sbjct: 10 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAE-------YA 62
Query: 78 PEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
+ K++ D+ + V E YN+ PT ++ G
Sbjct: 63 KKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDG 99
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 39.8 bits (93), Expect = 5e-05
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 12/97 (12%)
Query: 23 SVNNSQVIELDTD-----NVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLL 77
+ V + T + + VL F +WC S + P + E L
Sbjct: 20 ELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIE-------LS 72
Query: 78 PEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
I+ D+ + I PT +R G
Sbjct: 73 ENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDG 109
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 39.7 bits (93), Expect = 5e-05
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 23 SVNNSQVIELDTD-----NVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLL 77
+ ++VI + + ++ V+I F WC M P F + L
Sbjct: 8 AAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFAD-------LA 60
Query: 78 PEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
+ K++ D+ + + E +++ PT M+ G
Sbjct: 61 KKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEG 97
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 40.8 bits (95), Expect = 5e-05
Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 10/131 (7%)
Query: 9 FSVLILVLSDVVVGSVNNSQVIELDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFD 67
F+ + + DV N L + +R+ + D +++F C + +
Sbjct: 104 FAAFLEDIVDVSREETN------LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAH 157
Query: 68 EVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTV 127
+ + N K + +Y + YN++ P + I +G +++E+
Sbjct: 158 KF--AIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGE-DRVEFEGAYPE 214
Query: 128 EALVKYVREEL 138
+ ++ + L
Sbjct: 215 KMFLEKLLSAL 225
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 39.7 bits (93), Expect = 6e-05
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 25 NNSQVIELDTDN--VDYVRDNYD-FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR 81
S IEL + ++I F WC+ + F
Sbjct: 18 GQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKN--------QLNYY 69
Query: 82 KFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
+ I+ D + + + +NI PT + +
Sbjct: 70 YVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNL 102
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 40.4 bits (94), Expect = 8e-05
Identities = 11/121 (9%), Positives = 38/121 (31%), Gaps = 12/121 (9%)
Query: 19 VVVGSVNNSQVIELDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLL 77
+ + + +L ++ ++ + + +F C + + + +
Sbjct: 110 INGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFAL------ 163
Query: 78 PEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREE 137
I+ + + + E + +V P + I + E+ + A + Y+
Sbjct: 164 -ANDYITSKVIDASENQDLAEQFQVVGVPKIVINK----GVAEFVGAQPENAFLGYIMAV 218
Query: 138 L 138
Sbjct: 219 Y 219
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 38.8 bits (91), Expect = 8e-05
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V++ F WC + P F L + +++ DD + V + + P
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS-------LSEKYSNVIFLEVDVDDCQDVASESEVKSMP 75
Query: 107 TVKIMRHG 114
T + + G
Sbjct: 76 TFQFFKKG 83
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 38.8 bits (91), Expect = 8e-05
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 35 DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE 94
+ + + VL+ + C ML + +L +I D +
Sbjct: 9 EELATYIEEQQLVLLFIKTENCGVCDVMLRKVNY-------VLENYNYVEKIEILLQDMQ 61
Query: 95 SVCEDYNIVKYPTVKIMRHG 114
+ Y + PTV + +G
Sbjct: 62 EIAGRYAVFTGPTVLLFYNG 81
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 39.4 bits (92), Expect = 2e-04
Identities = 15/96 (15%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 22 GSVNNSQ-VIELDTDNV-DYVRDNYDF-VLILFYVKWCRFSVAMLPTFDEVLVTLINLLP 78
GS + + ++ ++ N+ + + VL F+ + + + + P + +
Sbjct: 1 GSHMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY----- 55
Query: 79 EPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
+F + K++CD + + + + PTV + ++G
Sbjct: 56 -NGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNG 90
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 38.1 bits (89), Expect = 2e-04
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 27 SQVIELDTDNV--DYVRDNYD-FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
S++IEL D + + + V++ F+ WC + P F E L E
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKE--------LSEKYDA 64
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
K++ D E YNI PT +++G
Sbjct: 65 IFVKVDVDKLEETARKYNISAMPTFIAIKNG 95
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 37.8 bits (88), Expect = 3e-04
Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 23 SVNNSQVIELDTDNVDY-VRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR 81
S+N S +IE + V D+ V+++FY C + AM P F+E +
Sbjct: 2 SLNGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS------ 55
Query: 82 KFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDP 141
+IN E Y + PT K HG V + + + +
Sbjct: 56 SAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPV------WEQVGQIYPSILKNAVRD 109
Query: 142 TIEIPEEE 149
++ EE
Sbjct: 110 MLQHGEEC 117
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 37.9 bits (88), Expect = 3e-04
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+++ F+ W M E L E + + K+ + V E Y I P
Sbjct: 35 LVVHFWAPWAPQCAQMNEVMAE-------LAKELPQVSFVKLEAEGVPEVSEKYEISSVP 87
Query: 107 TVKIMRHG 114
T ++
Sbjct: 88 TFLFFKNS 95
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 37.5 bits (87), Expect = 3e-04
Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTL-INLLPEPRKFA 84
+ ++I + + + ++ Y K C P + + + ++
Sbjct: 15 DGRLIYITPEEFRQLLQGD--AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSL 72
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
I + + PT+ + G
Sbjct: 73 IGERELSAARLEMNKAGVEGTPTLVFYKEG 102
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 36.5 bits (85), Expect = 5e-04
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
++ F ++ C + + P F + + + +++ + NI P
Sbjct: 24 AVVKFTMRGCGPCLRIAPAFSS-------MSNKYPQAVFLEVDVHQCQGTAATNNISATP 76
Query: 107 TVKIMRHG 114
T + R+
Sbjct: 77 TFQFFRNK 84
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 36.6 bits (85), Expect = 6e-04
Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
S + ++ T+ + ++ F+ C M D+ + AI+
Sbjct: 2 SAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDK-------FGARAPQVAIS 54
Query: 87 KINCDDYESVCEDYNIVKYPTVKIMRHG 114
++ + + ++ + PT+ +R G
Sbjct: 55 SVDSEARPELMKELGFERVPTLVFIRDG 82
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 36.1 bits (84), Expect = 7e-04
Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 29 VIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKI 88
VI LD+ N D +++ ++ F+ +WC + + P +E L + + K+
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEE-------LAEDYPQVGFGKL 53
Query: 89 NCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTI 143
N D+ + Y ++ PTV + G + + A+ + E + +
Sbjct: 54 NSDENPDIAARYGVMSLPTVIFFKDGEPV------DEIIGAVPREEIEIRIKNLL 102
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 36.2 bits (84), Expect = 7e-04
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 25 NNSQVIEL-DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
+ + + +L + + D ++I FY WC M P + L+
Sbjct: 10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTK-------LIQAYPDV 62
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
K + D+ + ++ + PT + + G
Sbjct: 63 RFVKCDVDESPDIAKECEVTAMPTFVLGKDG 93
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 36.2 bits (84), Expect = 8e-04
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 28 QVIELDTD-----NVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRK 82
VI +D+ + ++ + +++ F WC + P F+ + K
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY------AGK 56
Query: 83 FAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
K++ D +V E I PT + + G
Sbjct: 57 VIFLKVDVDAVAAVAEAAGITAMPTFHVYKDG 88
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 36.4 bits (84), Expect = 0.001
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 28 QVIELDTDN-VDYVR--DNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
++ E+ + V+ V + +V+I Y + + + RKF
Sbjct: 11 ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVL----------ARKFP 60
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEK 118
TK S E Y+ PT+ + ++G IE
Sbjct: 61 ETKFVKAIVNSCIEHYHDNCLPTIFVYKNGQIEG 94
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 35.8 bits (83), Expect = 0.001
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+++ F+ W A+ F+ I+ P + I+ D+ + E + I P
Sbjct: 24 IVLYFHTSWAEPCKALKQVFEA-----ISNEPSNSNVSFLSIDADENSEISELFEISAVP 78
Query: 107 TVKIMRHGSI 116
I+ G+I
Sbjct: 79 YFIIIHKGTI 88
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 35.4 bits (82), Expect = 0.002
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
V+E D L+ F+ WC + P +E+ + +
Sbjct: 33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG------RLKVV 86
Query: 87 KINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIE 144
K+N D++ + Y + PT+ + R G+ V A + V EE + P +E
Sbjct: 87 KVNVDEHPGLAARYGVRSVPTLVLFRRGAPV------ATWVGASPRRVLEERLRPYLE 138
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.002
Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 34/156 (21%)
Query: 14 LVLSDVVVGSVNNSQVIEL------------DTDNVDYVRDNYDFVLILFYVKWCRFSVA 61
LVL + V N++ D++ + L +
Sbjct: 248 LVLLN-----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 62 MLPTFDEVLVTLINLLPE------PRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGS 115
+ + L LP PR+ +I + D + +++ V + + S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 116 IEKL---EYRRERTVEALVKYVREELMDPTIEIPEE 148
+ L EYR+ + R + P+ IP
Sbjct: 363 LNVLEPAEYRK--------MFDRLSVFPPSAHIPTI 390
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 35.1 bits (81), Expect = 0.002
Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 28 QVIEL-DTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
V+++ + + + F WC + ++ + E
Sbjct: 20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEK-------IAYEFPTVKFA 72
Query: 87 KINCDDYESVCEDYNIVKYPTVKIMRHG 114
K++ D+ + +++ PT I R G
Sbjct: 73 KVDADNNSEIVSKCRVLQLPTFIIARSG 100
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 35.4 bits (81), Expect = 0.003
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 31 ELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPE-PRKFAITKI 88
+D VD ++ + V++ F RF D + V L L+ P + ++
Sbjct: 19 LVDEATVDDFIAHSGKIVVLFFRGDAVRF----PEAAD-LAVVLPELINAFPGRLVAAEV 73
Query: 89 NCDDYESVCEDYNIVKYPTVKIMRHG 114
+ + + + P++ +++
Sbjct: 74 AAEAERGLMARFGVAVCPSLAVVQPE 99
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 35.1 bits (81), Expect = 0.003
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 28 QVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITK 87
+VI + +D + + ++I F+ WC + P F E K K
Sbjct: 39 EVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG------KVRFVK 92
Query: 88 INCDDYESVCEDYNIVKYPTVKIMRHG 114
+N + ++ + I PT+ + R+G
Sbjct: 93 VNTEAEPALSTRFRIRSIPTIMLYRNG 119
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 34.9 bits (80), Expect = 0.004
Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+++ F + + + L + AI ++ D + ++I P
Sbjct: 26 LVLRFGRDEDPVCLQLDDILSKTSSDL------SKMAAIYLVDVDQTAVYTQYFDISYIP 79
Query: 107 TVKIMRHG 114
+ +G
Sbjct: 80 STVFFFNG 87
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 34.8 bits (80), Expect = 0.004
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 22 GSVNNSQVIELDTDNV---DYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLP 78
GS +S I+ D + RD ++ F+ W + P + ++ +
Sbjct: 1 GSSGSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKY----- 55
Query: 79 EPRKFAITKINCDDYESVCEDYNIVKY------PTVKIMRHG 114
K++ Y V Y + PT+ + + G
Sbjct: 56 NCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGG 97
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 34.2 bits (79), Expect = 0.004
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+++ F+ +WC + P + L E + K++ D E Y++ P
Sbjct: 22 IVVDFFAQWCGPCRNIAPKVEA-------LAKEIPEVEFAKVDVDQNEEAAAKYSVTAMP 74
Query: 107 TVKIMRHG 114
T ++ G
Sbjct: 75 TFVFIKDG 82
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 34.2 bits (79), Expect = 0.004
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 23 SVNNSQVIELDTD-NVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR 81
++ V + + D + + V++ F+ +WC + P ++E
Sbjct: 4 HHHHHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEE-------CSKTYT 56
Query: 82 KFAITKINCDDYESVCEDYNIVKYPTVKIMRHG 114
K K++ D+ V E NI PT K+ ++G
Sbjct: 57 KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNG 89
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 33.4 bits (77), Expect = 0.006
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V++ F+ WC + P E L + K++ D+ E + +YNI P
Sbjct: 23 VVLDFFATWCGPCKMISPKLVE----LSTQFADNVVVL--KVDVDECEDIAMEYNISSMP 76
Query: 107 TVKIMRHG 114
T +++G
Sbjct: 77 TFVFLKNG 84
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 33.6 bits (77), Expect = 0.008
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105
+V+I Y + + + RKF TK S + Y+
Sbjct: 25 WVIIHLYRSSIPMCLLVNQHLSLL----------ARKFPETKFVKAIVNSCIQHYHDNCL 74
Query: 106 PTVKIMRHGSIEK 118
PT+ + ++G IE
Sbjct: 75 PTIFVYKNGQIEA 87
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 34.1 bits (78), Expect = 0.008
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 46 FVLILFYVKWCRFSVAMLPTF--DEVLVTLINLLPEPRKFAITKINCDDYE--SVCEDYN 101
+++I + +E + +I F ++ D E + Y
Sbjct: 44 WLMINIQNVQDFACQCLNRDVWSNEAVKNIIR-----EHFIFWQVYHDSEEGQRYIQFYK 98
Query: 102 IVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVRE 136
+ +P V I+ + +KL + V + + V
Sbjct: 99 LGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTG 133
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 33.6 bits (77), Expect = 0.012
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
+V +D + + +L+ F+ WC M P F TL + +
Sbjct: 47 GKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG------QVRLA 100
Query: 87 KINCDDYESVCEDYNIVKYPTVKIMRHG 114
KI+ + +V + I P + G
Sbjct: 101 KIDTQAHPAVAGRHRIQGIPAFILFHKG 128
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 33.0 bits (76), Expect = 0.012
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V++ FY WC + P ++ + + K++ D+ V + + P
Sbjct: 27 VVVDFYATWCGPCKMIAPMIEK-------FSEQYPQADFYKLDVDELGDVAQKNEVSAMP 79
Query: 107 TVKIMRHG 114
T+ + ++G
Sbjct: 80 TLLLFKNG 87
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 32.7 bits (75), Expect = 0.016
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V+I F+ WC + P F+++ T P K K++ D+ + ++ I P
Sbjct: 36 VVIDFWATWCGPCKMIGPVFEKISDT-----PAGDKVGFYKVDVDEQSQIAQEVGIRAMP 90
Query: 107 TVKIMRHG 114
T ++G
Sbjct: 91 TFVFFKNG 98
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 32.3 bits (74), Expect = 0.019
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
++ IE+ N D + VL+ F+ +WC + P +E+ K +
Sbjct: 1 AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG------KLLVA 54
Query: 87 KINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIP 146
K++ D+ Y ++ PTV + + G E V A K + ++ +
Sbjct: 55 KLDVDENPKTAMRYRVMSIPTVILFKDGQPV------EVLVGAQPKRNYQAKIEKHLPAT 108
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 32.3 bits (74), Expect = 0.020
Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI 85
+ L +N D V N VL+ + +WC P + +V K
Sbjct: 3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG------KAVF 56
Query: 86 TKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIE 144
++N D+ + + + Y+++ PT I +G + + V A+ + E ++ ++
Sbjct: 57 GRLNVDENQKIADKYSVLNIPTTLIFVNGQLV------DSLVGAVDEDTLESTVNKYLK 109
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 32.3 bits (74), Expect = 0.022
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 27 SQVIELDTDNVD-YVRDNYD-FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
+V E++ D V+ D V++ + +WC S AM P +++ L E
Sbjct: 5 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEK-------LAEEYLDVI 57
Query: 85 ITKINCD-DYESVCEDYNIVKYPTVKIMRHGSI 116
K++C+ + +++ ++ I PT KI++ S+
Sbjct: 58 FLKLDCNQENKTLAKELGIRVVPTFKILKENSV 90
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 31.6 bits (72), Expect = 0.033
Identities = 11/95 (11%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 23 SVNNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRK 82
S ++ +++ VL+ F+ WC + + +
Sbjct: 2 SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPS-------IAEANKD 54
Query: 83 FAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIE 117
K++ D + + Y + P + ++ E
Sbjct: 55 VTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNE 89
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 31.6 bits (72), Expect = 0.041
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 27 SQVIELDTDNVD-YVRDNYD-FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
+V E++ D V+ D V++ + +WC AM P +++ L E
Sbjct: 18 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK-------LAEEYLDVI 70
Query: 85 ITKINCD-DYESVCEDYNIVKYPTVKIMRHGSI 116
K++C+ + +++ ++ I PT KI++ S+
Sbjct: 71 FLKLDCNQENKTLAKELGIRVVPTFKILKENSV 103
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 29.6 bits (67), Expect = 0.15
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+ LF C A +EV + P + IN + +Y I+ P
Sbjct: 5 KIELFTSPMCPHCPAAKRVVEEVANEM------PDAVEVEYINVMENPQKAMEYGIMAVP 58
Query: 107 TVKIMRHGSI 116
T+ I
Sbjct: 59 TIVINGDVEF 68
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 29.2 bits (66), Expect = 0.22
Identities = 11/98 (11%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
L++F K C + P +E+ + F ++ ++ +++ + +++ P
Sbjct: 25 CLVMFSRKNCHVCQKVTPVLEELRLNYEE------SFGFYYVDVEEEKTLFQRFSLKGVP 78
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIE 144
+ + G + + + E+++ +E
Sbjct: 79 QILYFKDGEYK------GKMAGDVEDDEVEQMIADVLE 110
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 29.6 bits (66), Expect = 0.22
Identities = 15/100 (15%), Positives = 23/100 (23%), Gaps = 14/100 (14%)
Query: 25 NNSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
N + D + K C + T V+ K
Sbjct: 10 NIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVV--------AETKAH 61
Query: 85 ITKINCDDYE------SVCEDYNIVKYPTVKIMRHGSIEK 118
I IN ++ + Y I P + G I
Sbjct: 62 IYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINV 101
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 29.3 bits (66), Expect = 0.28
Identities = 11/70 (15%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+++ F+ KWC+ D++ + + K++ D ES+ +++ P
Sbjct: 45 IVLYFFAKWCQACTMQSTEMDKLQKYYGK------RIYLLKVDLDKNESLARKFSVKSLP 98
Query: 107 TVKIMRHGSI 116
T+ ++++ ++
Sbjct: 99 TIILLKNKTM 108
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 29.4 bits (66), Expect = 0.29
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
++ + + + ++ ++ FY WC + P +E+ K I
Sbjct: 34 KKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG------KIYIY 87
Query: 87 KINCDDYESVCEDYNIVKYPTVKIMRHG 114
K+N D + D+ I PT+ +
Sbjct: 88 KVNVDKEPELARDFGIQSIPTIWFVPMK 115
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 28.4 bits (64), Expect = 0.38
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 29 VIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKI 88
+ L N VL+ F+ WC M P +E + K + K+
Sbjct: 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAKL 55
Query: 89 NCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIE 144
N D+ + I+ PT+ + + G ++ + K E + ++
Sbjct: 56 NVDENPETTSQFGIMSIPTLILFKGGRPV------KQLIGYQPKEQLEAQLADVLQ 105
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 28.4 bits (64), Expect = 0.47
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC + P+ + + + K I K+N D+ Y ++ P
Sbjct: 26 VLVDFWAAWCGPCRQIAPSLEAIAAEYGD------KIEIVKLNIDENPGTAAKYGVMSIP 79
Query: 107 TVKIMRHGSIEK 118
T+ + + G + K
Sbjct: 80 TLNVYQGGEVAK 91
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 28.6 bits (64), Expect = 0.58
Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 27 SQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAIT 86
++V + + ++ + ++ FY WC + P DE+ + I
Sbjct: 21 AKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG------QIVIY 74
Query: 87 KINCDDYESVCEDYNIVKYPTVKIMRHG 114
K++ + + + + I P++ +
Sbjct: 75 KVDTEKEQELAGAFGIRSIPSILFIPME 102
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 28.5 bits (63), Expect = 0.68
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 47 VLILFYVKWCRFSVAM-LPTF-DEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK 104
V++ F C M L + D + ++IN + + + D+ + E I++
Sbjct: 50 VMLDFTGYGCVNCRKMELAVWTDPKVSSIIN-----NDYVLITLYVDNKTPLTEPVKIME 104
Query: 105 YPTVKIMR 112
T + +R
Sbjct: 105 NGTERTLR 112
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 28.0 bits (62), Expect = 0.96
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 19/104 (18%)
Query: 47 VLILFYVKWCRFSVAMLP-TFDEVLVTLINLLPEPRKFAITKINCDDYES---VCEDYNI 102
L++F WC A+ ++ LI + F + KI+ +++ + + Y
Sbjct: 32 TLLVFGANWCTDCRALDKSLRNQKNTALIA-----KHFEVVKIDVGNFDRNLELSQAYGD 86
Query: 103 VK---YPTV-------KIMRHGSIEKLEYRRERTVEALVKYVRE 136
P V K+ +L R+ + + + + +
Sbjct: 87 PIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAK 130
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 27.7 bits (62), Expect = 1.0
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC + P +E+ + K++ D ++ +V P
Sbjct: 33 VLVDFWATWCGPCKMVAPVLEEIATERAT------DLTVAKLDVDTNPETARNFQVVSIP 86
Query: 107 TVKIMRHGSIEK 118
T+ + + G K
Sbjct: 87 TLILFKDGQPVK 98
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 26.9 bits (60), Expect = 1.1
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+ +F C + + DE K + KI+ +Y ++ P
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEF------GDKIDVEKIDIMVDREKAIEYGLMAVP 57
Query: 107 TVKI 110
+ I
Sbjct: 58 AIAI 61
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 27.3 bits (61), Expect = 1.2
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
L+ F+ C + P +E+ K I K++ D+ S Y ++ P
Sbjct: 22 QLVDFWATACGPCKMIAPVLEELAADYEG------KADILKLDVDENPSTAAKYEVMSIP 75
Query: 107 TVKIMRHGSIEK 118
T+ + + G
Sbjct: 76 TLIVFKDGQPVD 87
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.3
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 13/35 (37%)
Query: 115 SIEKLE-----YRRERTVEALVKYVREELMDPTIE 144
+++KL+ Y + + AL + T+E
Sbjct: 21 ALKKLQASLKLYADD-SAPALA-------IKATME 47
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 26.9 bits (60), Expect = 1.6
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ +WC + P E+ K + K+N DD Y + P
Sbjct: 23 VLVDFWAEWCGPCKMIGPALGEIGKEFAG------KVTVAKVNIDDNPETPNAYQVRSIP 76
Query: 107 TVKIMRHGSIEK 118
T+ ++R G +
Sbjct: 77 TLMLVRDGKVID 88
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 27.5 bits (61), Expect = 1.7
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 33 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 86
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIEIPEEENLVNV 154
T+ + ++G + V AL K +E +D + E+ V V
Sbjct: 87 TLLLFKNGEVA------ATKVGALSKGQLKEFLDANLAGSAMESTVMV 128
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 27.0 bits (60), Expect = 1.9
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + + P DE+ K + K+N D Y I P
Sbjct: 43 ILVDFWAEWCGPAKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 96
Query: 107 TVKIMRHGSIEK 118
T+ + ++G +
Sbjct: 97 TLLLFKNGEVAA 108
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 26.6 bits (58), Expect = 1.9
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 24/92 (26%)
Query: 49 ILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCD------DYESVCEDYNI 102
++ WC F + + C C + I
Sbjct: 17 TMYGAYWCPHCQDQKELFGAAFDQ------------VPYVECSPNGPGTPQAQECTEAGI 64
Query: 103 VKYPTVKIMRHGSIEKLEYRRERTVEALVKYV 134
YPT I +G Y R++EAL
Sbjct: 65 TSYPTWII--NGRT----YTGVRSLEALAVAS 90
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 26.5 bits (59), Expect = 2.2
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC + P DE+ + K K+N D+ +V +Y I P
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKD------KLKCVKLNTDESPNVASEYGIRSIP 75
Query: 107 TVKIMRHGSIEK 118
T+ + + G +
Sbjct: 76 TIMVFKGGKKCE 87
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 26.5 bits (59), Expect = 2.2
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC + P +E+ K + K+N D+ + Y I P
Sbjct: 22 VLVDFWAPWCGPCRMIAPIIEELAKEYEG------KVKVVKVNVDENPNTAAQYGIRSIP 75
Query: 107 TVKIMRHGSIEK 118
T+ + ++G +
Sbjct: 76 TLLLFKNGQVVD 87
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 26.9 bits (59), Expect = 2.4
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105
+++ Y R A+ + + L E KI + + ++
Sbjct: 122 TIVVNIYEDGVRGCDALNSSLEC-------LAAEYPMVKFCKIRASNTG-AGDRFSSDVL 173
Query: 106 PTVKIMRHGSIEK 118
PT+ + + G +
Sbjct: 174 PTLLVYKGGELIS 186
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 26.4 bits (59), Expect = 2.4
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V++ F+ WC + P DE+ K A+ K+N D+ + YNI P
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSG------KIAVYKLNTDEAPGIATQYNIRSIP 74
Query: 107 TVKIMRHGSIEK 118
TV ++G ++
Sbjct: 75 TVLFFKNGERKE 86
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 26.5 bits (59), Expect = 2.5
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ F+ WC M P + T + + + K+ D + + Y + P
Sbjct: 28 VLVYFWASWCGPCQLMSPLINLAANTYSD------RLKVVKLEIDPNPTTVKKYKVEGVP 81
Query: 107 TVKIMRHGSIEK 118
+++++ I
Sbjct: 82 ALRLVKGEQILD 93
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 26.7 bits (58), Expect = 3.1
Identities = 11/129 (8%), Positives = 32/129 (24%), Gaps = 14/129 (10%)
Query: 9 FSVLILVLSDVVVGSVNNSQVIELDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFD 67
L+ V+ + L+ + ++ + C + +
Sbjct: 108 IRALVEVIMRLSEDESG------LEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAH 161
Query: 68 EVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTV 127
+ + + + Y ++ P++ I L +
Sbjct: 162 MFAYEAWKQGNP--VILSEAVEAYENPDIADKYGVMSVPSIAIN-----GYLVFVGVPYE 214
Query: 128 EALVKYVRE 136
E + YV+
Sbjct: 215 EDFLDYVKS 223
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_H 4a1c_H 4a1e_H
Length = 215
Score = 26.6 bits (58), Expect = 3.2
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 81 RKFAITKINCDDYESVCEDYNI------VKYPTVKIMRHGSIEKLEYRR 123
+K+ TK+ Y + + VK I G + +LE R
Sbjct: 169 QKWGFTKLTRAQYSRLRNQKKLVTDGSNVKV----IGERGPLSRLELFR 213
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 26.6 bits (58), Expect = 3.5
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK-- 104
++++ + WC A+ P F E + F + + D+ E ED++
Sbjct: 49 LMVIIHKSWCGACKALKPKFAE----STEISELSHNFVMVNLE-DEEEPKDEDFSPDGGY 103
Query: 105 YPTVKIM 111
P + +
Sbjct: 104 IPRILFL 110
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 26.2 bits (58), Expect = 3.7
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V++ F+ +WC + P ++++ K + K++ DD+ + +Y + P
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHG------KVVMAKVDIDDHTDLAIEYEVSAVP 87
Query: 107 TVKIMRHGSI 116
TV M++G +
Sbjct: 88 TVLAMKNGDV 97
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 25.7 bits (57), Expect = 3.8
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL F+ WC S + P +E+ + + K I KI+ D+ + Y ++ P
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGD------KLKIVKIDVDENQETAGKYGVMSIP 73
Query: 107 TVKIMRHGSIEK 118
T+ +++ G + +
Sbjct: 74 TLLVLKDGEVVE 85
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 25.3 bits (56), Expect = 6.4
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ F+ +WC + P DE+ K + K+N D Y I P
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQG------KLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 107 TVKIMRHGSIEK 118
T+ + ++G +
Sbjct: 77 TLLLFKNGEVAA 88
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 25.4 bits (56), Expect = 6.6
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 47 VLILFYVKWCRFSVAMLP-TF-DEVLVTLINLLPEPRKFAITKINCDDYES--VCEDYNI 102
V++ F+ + C + M D + L+ +F + ++ D E + Y +
Sbjct: 22 VMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE-----ARFVVASVSVDTPEGQELARRYRV 76
Query: 103 VKYPTVKIM 111
PT +
Sbjct: 77 PGTPTFVFL 85
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 25.1 bits (55), Expect = 6.7
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+I+F C + V M + ++ + + Y+ P
Sbjct: 29 TIIMFKTDTCPYCVEMQKELSY----VSKEREGKFNIYYARLEEEKNIDLAYKYDANIVP 84
Query: 107 TV 108
T
Sbjct: 85 TT 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 7.0
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 63 LPTFDEVLVTLINLLPEPRKFAIT 86
LP +V ++L+N + ++
Sbjct: 360 LPAGKQVEISLVN---GAKNLVVS 380
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc,
PSI-biology, structural genomics; 1.91A {Legionella
pneumophila subsp}
Length = 297
Score = 25.4 bits (56), Expect = 10.0
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 126 TVEALVKYVREELMDPTIEIPEEENLVNVEN 156
++ LV R +L I ENL +
Sbjct: 254 SITQLVLMNRYQLNPVNINTAMAENLYFQSH 284
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,505,933
Number of extensions: 147454
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 122
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)