RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12669
(157 letters)
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 60.0 bits (145), Expect = 4e-13
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 14/121 (11%)
Query: 24 VNNSQVIELDTDNVDYVRDNYDFVLILFYVKWC-----RFSVAMLPTFDEVLVTLINLLP 78
++ + LDT V FVL+ F ++ + L+
Sbjct: 1 LHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVA--- 57
Query: 79 EPRKFAITKINCDDYESVCEDY--NIVKYPTVKIMRHGSIEK-LEYRRERTVEALVKYVR 135
+ I+ + E Y + YP + R G E + Y V A+ ++++
Sbjct: 58 ---EVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLK 114
Query: 136 E 136
Sbjct: 115 G 115
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 59.7 bits (144), Expect = 6e-13
Identities = 11/114 (9%), Positives = 41/114 (35%), Gaps = 8/114 (7%)
Query: 29 VIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR--KFAIT 86
++LD + + + + + ++ F + F + + +
Sbjct: 4 CVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVK 61
Query: 87 KINCDDYESVCEDY--NIVKYPTVKIMRHGSIE--KLEYRRERTVEALVKYVRE 136
+ +++ + Y + +P++ + + + E +L + T++ L +V
Sbjct: 62 DYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSA 115
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 57.1 bits (137), Expect = 6e-12
Identities = 19/117 (16%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFS-VAMLPTFDEVLVTLINLLPEPRKFA 84
+VI ++ N V Y+ + +L++ +E+++ L + E +
Sbjct: 10 VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVG 69
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREELMDP 141
++ + +V + + + ++ + + E +EY E + + LV+++ + L DP
Sbjct: 70 FGLVDSEKDAAVAKKLGLTEEDSIYVFKE--DEVIEYDGEFSADTLVEFLLDVLEDP 124
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 56.8 bits (136), Expect = 7e-12
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI 85
V+ L N + ++L+ FY WC A+ P + + L E + +
Sbjct: 6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAK---AAGKLKAEGSEIRL 62
Query: 86 TKINCDDYESVCEDYNIVKYPTVKIMRHGS-IEKLEYRRERTVEALVKYVREEL 138
K++ + + + Y + YPT+K R+G EY R + +V ++++
Sbjct: 63 AKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 56.4 bits (135), Expect = 1e-11
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 29 VIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITK 87
V + N + V D+ VLI FY WC A+ P ++E L L +
Sbjct: 4 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEE----LGALYAKSEFKDRVV 59
Query: 88 INCDDYESVCEDYNIVKYPTVKIMRHGS-IEKLEYRRERTVEALVKYVRE 136
I D + I +PT+K+ G+ + + Y RTVE L+K++ E
Sbjct: 60 IAKVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 109
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 55.2 bits (132), Expect = 4e-11
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 25 NNSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
+S V +L N D V D VL+L+Y WC + PT+ E+ T N
Sbjct: 10 QDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN-----ATS 64
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHGS-IEKLEYRRERTVEALVKYVRE 136
+ D E+ I YPT+ + G E + Y+ R++++L +++E
Sbjct: 65 DVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE 118
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 119
Score = 51.4 bits (122), Expect = 9e-10
Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 26 NSQVIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAI 85
+S V++L TD+ + ++D VL F+ WC M P + + TL+ + +
Sbjct: 9 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-----KNITL 63
Query: 86 TKINCDDYESVCEDYNIVKYPTVKIMRHGS-IEKLEYRRERTVEALVKYVREEL 138
+I+C + + +C ++NI +P++KI ++ ++Y RT EA+V+++ ++
Sbjct: 64 AQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS 117
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 47.1 bits (111), Expect = 2e-08
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 29 VIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITK 87
+I L D+ D V +L+ F+ +WC + P DE+ K + K
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE------YQGKLTVAK 57
Query: 88 INCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
+N D Y I PT+ + ++G + + L +++ L
Sbjct: 58 LNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA-TKVGALSKGQLKEFLDANL 107
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 46.7 bits (110), Expect = 3e-08
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 7/110 (6%)
Query: 29 VIELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKI 88
+ L N VL+ F+ WC P V K + K+
Sbjct: 2 TMTLTDANFQQAIQGDKPVLVDFWAAWCG------PCRMMAPVLEEFAEAHADKVTVAKL 55
Query: 89 NCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
N D+ + I+ PT+ + + G K + + E L + + L
Sbjct: 56 NVDENPETTSQFGIMSIPTLILFKGGEPVK-QLIGYQPKEQLEAQLADVL 104
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 40.2 bits (93), Expect = 9e-06
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 26 NSQVIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
+ VI + + V VL+ F+ WC M P + T +
Sbjct: 1 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY------SDRLK 54
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
+ K+ D + + Y + P +++++ I + + L+ ++ L
Sbjct: 55 VVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILD-STEGVISKDKLLSFLDTHL 107
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 39.6 bits (92), Expect = 2e-05
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL+ K E+L + + + + E++ + + + ++P
Sbjct: 39 VLLSSDPKRTPEVSDNPVMIGELLREF-----PDYTWQVAIADLEQSEAIGDRFGVFRFP 93
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPTIE 144
+ G+ L+ +R L++P E
Sbjct: 94 ATLVFTGGNYRG-VLNGIHPWAELINLMR-GLVEPQQE 129
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 38.2 bits (88), Expect = 7e-05
Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 26 NSQVIELDT-----DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEP 80
QVI T ++ + + + +++ F WC + P F E+
Sbjct: 3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF------- 55
Query: 81 RKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVRE 136
K++ D+ ++V E++N+ PT ++ G + ++ + L V +
Sbjct: 56 PNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDG--KLVDKTVGADKDGLPTLVAK 109
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 37.6 bits (86), Expect = 8e-05
Identities = 14/109 (12%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 31 ELDTDNVDYVRD-NYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
L + +R+ + D +++F C + + + + K +
Sbjct: 1 NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKG--KILGDMVE 58
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
+Y + YN++ P + I +G +++E+ + ++ + L
Sbjct: 59 AIEYPEWADQYNVMAVPKIVIQVNGE-DRVEFEGAYPEKMFLEKLLSAL 106
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 37.6 bits (86), Expect = 1e-04
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 29 VIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITK 87
++ D V ++ VL+ F+ WC + P DE+ K K
Sbjct: 3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGE------YKDKLKCVK 56
Query: 88 INCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
+N D+ +V +Y I PT+ + + G + +V+ V + L
Sbjct: 57 LNTDESPNVASEYGIRSIPTIMVFKGGKKCE-TIIGAVPKATIVQTVEKYL 106
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 36.1 bits (83), Expect = 4e-04
Identities = 9/90 (10%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+L+ + E+L + + + + E++ + +N+ ++P
Sbjct: 33 ILLSSDPRRTPEVSDNPVMIAELLREFPQF-----DWQVAVADLEQSEAIGDRFNVRRFP 87
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVRE 136
+ G + L+ +R
Sbjct: 88 ATLVFTDGKLRG-ALSGIHPWAELLTLMRS 116
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 35.1 bits (80), Expect = 4e-04
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 11/92 (11%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+ +F C + + D K + KI+ +Y ++ P
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVD------EAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVP 57
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
+ I + + + E L + + +E+
Sbjct: 58 AIAIN-----GVVRFVGAPSREELFEAINDEM 84
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 35.3 bits (80), Expect = 5e-04
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 29 VIELDTDNVD-YVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITK 87
V +++ + +V ++ V++ F+ WC + P DE+ K A+ K
Sbjct: 1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG------KIAVYK 54
Query: 88 INCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
+N D+ + YNI PTV ++G ++ L + + L
Sbjct: 55 LNTDEAPGIATQYNIRSIPTVLFFKNGERKE-SIIGAVPKSTLTDSIEKYL 104
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 34.8 bits (79), Expect = 9e-04
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 27 SQVIELDTDN-----VDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPR 81
VI +D+ + ++ + +++ F WC + P F+ +
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY------AG 55
Query: 82 KFAITKINCDDYESVCEDYNIVKYPTVKIMRHGS-IEKLEYRRERTVEALVK 132
K K++ D +V E I PT + + G + L + ++ALV
Sbjct: 56 KVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVA 107
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 34.0 bits (77), Expect = 0.002
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 27 SQVIELDTDNVDYV--RDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFA 84
+V E++ D + V++ + +WC AM P ++
Sbjct: 6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYE------KLAEEYLDVIF 59
Query: 85 ITKINCDDYESVCEDYNIVKYPTVKIMRHGSI 116
+ + +++ ++ I PT KI++ S+
Sbjct: 60 LKLDCNQENKTLAKELGIRVVPTFKILKENSV 91
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 32.4 bits (73), Expect = 0.007
Identities = 11/92 (11%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
++ F ++ C + + P F ++ + + +++ + NI P
Sbjct: 24 AVVKFTMRGCGPCLRIAPAFS-------SMSNKYPQAVFLEVDVHQCQGTAATNNISATP 76
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
T + R+ +++ + L + +++ L
Sbjct: 77 TFQFFRNK--VRIDQYQGADAVGLEEKIKQHL 106
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 32.1 bits (72), Expect = 0.008
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 26 NSQVIELDT-----DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEP 80
QVI T + + ++ V++ F WC + P F +L +
Sbjct: 5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFA-------DLAKKL 57
Query: 81 RKFAITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
K++ D+ +SV D+ I PT ++ G + L+ + L + + L
Sbjct: 58 PNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEG--KILDKVVGAKKDELQSTIAKHL 113
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 31.6 bits (71), Expect = 0.009
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 45 DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK 104
DF +Y C ++ + + V + T I+ +++ + N++
Sbjct: 16 DFEFETYYSLSCHNCPDVVQALNLMAV-------LNPRIKHTAIDGGTFQNEITERNVMG 68
Query: 105 YPTVKIMRHGSIEKLEYRRERTVEALVKYV 134
P V + K + T+ +V V
Sbjct: 69 VPAVFVN-----GKEFGQGRMTLTEIVAKV 93
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 31.6 bits (71), Expect = 0.012
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V++ F WC + P F + N +++ DD + V + + P
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSN-------VIFLEVDVDDCQDVASECEVKCMP 75
Query: 107 TVKIMRHGS-IEKLEYRRERTVEALVK 132
T + + G + + + +EA +
Sbjct: 76 TFQFFKKGQKVGEFSGANKEKLEATIN 102
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 31.1 bits (69), Expect = 0.014
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
+ LF C A + P + IN + +Y I+ P
Sbjct: 5 KIELFTSPMCPHCPAAKRVVE------EVANEMPDAVEVEYINVMENPQKAMEYGIMAVP 58
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
T+ I E+ T EALV+ +++ L
Sbjct: 59 TIVINGDV-----EFIGAPTKEALVEAIKKRL 85
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 30.7 bits (68), Expect = 0.033
Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 4/111 (3%)
Query: 25 NNSQVIELDT-DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKF 83
+N + +E+ T D + K C + T V+ +
Sbjct: 6 DNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHI--YFIN 63
Query: 84 AITKINCDDYESVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYV 134
+ +D ++ Y I P + G + + + + +
Sbjct: 64 SEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQ-INVRCDSSMSAQEIKDFA 113
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 30.5 bits (68), Expect = 0.049
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
V+I F W + M + + N I ++ + + Y +
Sbjct: 25 VVIRFGHDWDPTCMKMDEVLYSIAEKVKN------FAVIYLVDITEVPDFNKMYELYDPC 78
Query: 107 TVKIMRHG 114
TV
Sbjct: 79 TVMFFFRN 86
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 29.4 bits (65), Expect = 0.072
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 30 IELDTDNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKIN 89
I D + + V++ F+ +WC + P ++E T K++
Sbjct: 4 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-------MVFIKVD 56
Query: 90 CDDYESVCEDYNIVKYPTVKIMRHGS-IEKLEYRRERTVEALVK 132
D+ V E NI PT K+ ++GS ++ L + ++ L++
Sbjct: 57 VDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIE 100
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 30.0 bits (67), Expect = 0.081
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 46 FVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKY 105
+++ Y R A+ + + + KI + + ++
Sbjct: 122 TIVVNIYEDGVRGCDALNSSLECLAAEYPM-------VKFCKIRASNTG-AGDRFSSDVL 173
Query: 106 PTVKIMRHG 114
PT+ + + G
Sbjct: 174 PTLLVYKGG 182
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein
C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Length = 100
Score = 28.9 bits (64), Expect = 0.11
Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 15/96 (15%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVKYP 106
VL LF C + I + + E Y P
Sbjct: 18 VLTLFTKAPCPLCDEAKEVLQP--------YKDRFILQEVDITLPENSTWYERYKF-DIP 68
Query: 107 TVKIMRHGSIEKLEYRRERTVEALVKYVREELMDPT 142
+ + +R L K + +L P+
Sbjct: 69 VFHLNGQ---FLMMHRVNT--SKLEKQL-RKLSGPS 98
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 28.4 bits (62), Expect = 0.26
Identities = 10/95 (10%), Positives = 22/95 (23%), Gaps = 7/95 (7%)
Query: 45 DFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDYNIVK 104
+ L++ WC L D + I+ E ++
Sbjct: 55 RYRLLVAGEMWCPDCQINLAALDF-------AQRLQPNIELAIISKGRAEDDLRQRLALE 107
Query: 105 YPTVKIMRHGSIEKLEYRRERTVEALVKYVREELM 139
+ ++ E R V + +
Sbjct: 108 RIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQAL 142
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 27.1 bits (59), Expect = 0.54
Identities = 13/111 (11%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 29 VIELDT-DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITK 87
V+++ + + + + F WC + + + E K
Sbjct: 10 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPME-------KIAYEFPTVKFAK 62
Query: 88 INCDDYESVCEDYNIVKYPTVKIMRHGSI--EKLEYRRERTVEALVKYVRE 136
++ D+ + +++ PT I R G + + + L +++
Sbjct: 63 VDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKD 113
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 25.9 bits (56), Expect = 1.8
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 47 VLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYESVCEDY 100
V F WC S A P + E + F + I+ D+ +DY
Sbjct: 31 VFFYFSASWCPPSRAFTPQLID----FYKAHAEKKNFEVMLISWDESAEDFKDY 80
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 24.4 bits (52), Expect = 4.7
Identities = 12/104 (11%), Positives = 27/104 (25%), Gaps = 4/104 (3%)
Query: 35 DNVDYVRDNYDFVLILFYVKWCRFSVAMLPTFDEVLVTLINLLPEPRKFAITKINCDDYE 94
D + ++++ + WC A+ P F E + F + + ++
Sbjct: 16 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAE----STEISELSHNFVMVNLEDEEEP 71
Query: 95 SVCEDYNIVKYPTVKIMRHGSIEKLEYRRERTVEALVKYVREEL 138
+ Y + S + KY
Sbjct: 72 KDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSA 115
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 197
Score = 24.4 bits (53), Expect = 5.9
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 124 ERTVEALVKYVREELMDPTIEIPEEENLVNV 154
+ +EAL + R L+ ++ + NL+++
Sbjct: 20 AQEIEALKEQTRSMLLATGRKLADTLNLIDI 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 611,326
Number of extensions: 28492
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 39
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.9 bits)