BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12678
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 2 GGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPY 61
G + VD + + D + ILS R + DV + +G F H+ VL+ACS Y
Sbjct: 1 GSMAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQY 60
Query: 62 FKTLLKS 68
FK L S
Sbjct: 61 FKKLFTS 67
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 12 FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
+ + D + ILS R + DV + +G F H+ VL+ACS YFK L S
Sbjct: 1 IGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTS 57
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
+L R D T DG F AHK VL+ACS YFK L
Sbjct: 12 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKML 54
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
+L R D T DG F AHK VL+ACS YFK L
Sbjct: 14 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKML 56
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
Q + +F SIL R + + DV++ G +F AH+ VL+A S YF+ L +
Sbjct: 7 QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN 65
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
Length = 124
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 12 FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKT 64
FA + T++L S R ++ DVT+ +G F AH+ VL+ACS YF +
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHS 57
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 12 FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKT 64
FA + T++L S R ++ DVT+ +G F AH+ VL+ACS YF +
Sbjct: 12 FAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHS 64
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 GGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPY 61
G +G+P+ + T+IL R ++ DVTL + F AH+ VL+ACS Y
Sbjct: 1 GPLGSPM---YVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEY 57
Query: 62 F 62
F
Sbjct: 58 F 58
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 18 DFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
+ S+L+S R F DVT+ + F AHK +LSA S YF L
Sbjct: 15 QYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQL 62
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 18 DFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
+ S+L+S R F DVT+ + F AHK +LSA S YF L
Sbjct: 13 QYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQL 60
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain
Of Human Gigaxonin
Length = 144
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
Q A+ +L + R+E F D L DG K +L+A SPY +T L
Sbjct: 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLN 78
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
+L + R+E F D L DG K +L+A SPY +T L
Sbjct: 18 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKL 61
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
+L + R+E F D L DG K +L+A SPY +T L
Sbjct: 18 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKL 61
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The
Krueppel Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
+L R++ + D TL G F AH VL+ CS +F++L
Sbjct: 11 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSL 53
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 21 TSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV 76
+ +L + LR + DV + F AHK VL ACS F ++ R L V
Sbjct: 14 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSV 69
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
+L R++ + D TL G F AH VL+ CS +F+ +
Sbjct: 12 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRI 54
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 14 LRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
+++ + +L + LR + DV + F AHK VL ACS F ++
Sbjct: 10 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSI 61
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 30 LRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
L + F D L G F AHK +L+A SP F + +
Sbjct: 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 205
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At
2.8a Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At
3.1a Resolution
Length = 297
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 13 ALRWNDFQTSILSSFRHLRDEED-----FVDVTLACDGC---SFTAHKVVLSACSPYFKT 64
++ DF+ S S R E F D+TL G F AH+ VL+A + YF
Sbjct: 22 SMEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTP 81
Query: 65 LL 66
LL
Sbjct: 82 LL 83
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
Length = 279
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 18 DFQTSILSSFRHLRDEED-----FVDVTLACDGC---SFTAHKVVLSACSPYFKTLL 66
DF+ S S R E F D+TL G F AH+ VL+A + YF LL
Sbjct: 9 DFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLL 65
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 36 FVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
F D L G F AHK +L+A SP F + +
Sbjct: 25 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 56
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From
Pseudomonas Putida
Length = 509
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV 76
N Q S + R L ED +AC G S A VL + SP F + G+R +
Sbjct: 195 NGTQASTAYALRGLFYAEDLYAAAIACGGLSVEA---VLGSRSP-FDARIHEARGQRGQI 250
Query: 77 DTA 79
DTA
Sbjct: 251 DTA 253
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Inhibited With L-Cysteine
pdb|1B8F|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Length = 507
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV 76
N Q S + R L ED +AC G S A VL + SP F + G+R +
Sbjct: 193 NGTQASTAYALRGLFYAEDLYAAAIACGGLSVEA---VLGSRSP-FDARIHEARGQRGQI 248
Query: 77 DTA 79
DTA
Sbjct: 249 DTA 251
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From
Pseudomonas Putida
Length = 507
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV 76
N Q S + R L ED +AC G S A VL + SP F + G+R +
Sbjct: 193 NGTQASTAYALRGLFYAEDLYAAAIACGGLSVEA---VLGSRSP-FDARIHEARGQRGQI 248
Query: 77 DTA 79
DTA
Sbjct: 249 DTA 251
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 507
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV 76
N Q S + R L ED +AC G S A VL + SP F + G+R +
Sbjct: 193 NGTQASTAYALRGLFYAEDLYAAAIACGGLSVEA---VLGSRSP-FDARIHEARGQRGQI 248
Query: 77 DTA 79
DTA
Sbjct: 249 DTA 251
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV 76
N Q S + R L ED +AC G S A VL + SP F + G+R +
Sbjct: 195 NGTQASTAYALRGLFYAEDLYAAAIACGGLSVEA---VLGSRSP-FDARIHEARGQRGQI 250
Query: 77 DTA 79
DTA
Sbjct: 251 DTA 253
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 36 FVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
F D L G F AHK +L+A SP F +
Sbjct: 34 FTDCCLCVAGQEFQAHKAILAARSPVFSAXFE 65
>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Closed Form At 1.15 A
Resolution
pdb|2OLO|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Open Form At 1.9a Resolution
Length = 397
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 39 VTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR 72
V++ D ++ A KVVL AC PY LL+ + R
Sbjct: 186 VSVTTDRGTYRAGKVVL-ACGPYTNDLLEPLGAR 218
>pdb|2Q6U|A Chain A, Semet-Substituted Form Of Nikd
Length = 384
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 39 VTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR 72
V++ D ++ A KVVL AC PY LL+ + R
Sbjct: 185 VSVTTDRGTYRAGKVVL-ACGPYTNDLLEPLGAR 217
>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase
Essential For Nikkomycin Biosynthesis: Open Form At
1.55a Resolution
Length = 397
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 39 VTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR 72
V++ D ++ A KVVL AC PY LL+ + R
Sbjct: 186 VSVTTDRGTYRAGKVVL-ACGPYTNDLLEPLGAR 218
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR 72
ILS H+ +ED D +AC A ++ C+ + K +LK ++ R
Sbjct: 797 ILSFIDHIAGDEDHTDGVVAC------AAGLIGDLCTAFGKDVLKLVEAR 840
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR 72
ILS H+ +ED D +AC A ++ C+ + K +LK ++ R
Sbjct: 797 ILSFIDHIAGDEDHTDGVVAC------AAGLIGDLCTAFGKDVLKLVEAR 840
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR 72
ILS H+ +ED D +AC A ++ C+ + K +LK ++ R
Sbjct: 797 ILSFIDHIAGDEDHTDGVVAC------AAGLIGDLCTAFGKDVLKLVEAR 840
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR 72
ILS H+ +ED D +AC A ++ C+ + K +LK ++ R
Sbjct: 672 ILSFIDHIAGDEDHTDGVVAC------AAGLIGDLCTAFGKDVLKLVEAR 715
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 22/34 (64%)
Query: 27 FRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSP 60
+++ +D+ + V+ +C CS + H++ ++ C+P
Sbjct: 514 WKYRKDKTLYHPVSGSCMDCSESDHRIFMNTCNP 547
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 38 DVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVDTA 79
D T+ F AH+ VL++ S YF + +S + +D +
Sbjct: 24 DCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQS 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,300,386
Number of Sequences: 62578
Number of extensions: 71180
Number of successful extensions: 249
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 36
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)