Query psy12678
Match_columns 80
No_of_seqs 112 out of 1060
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 16:41:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z8h_A Transcription regulator 99.8 1.5E-19 5.1E-24 111.4 6.4 71 7-77 7-77 (138)
2 3ohu_A Transcription regulator 99.8 1.7E-19 5.7E-24 109.2 6.3 70 8-77 4-73 (125)
3 2ihc_A Transcription regulator 99.8 2.5E-19 8.5E-24 108.7 5.7 68 9-76 2-69 (124)
4 3b84_A Zinc finger and BTB dom 99.8 6.9E-19 2.4E-23 106.1 4.5 62 14-75 2-63 (119)
5 2if5_A Zinc finger and BTB dom 99.7 8.3E-19 2.8E-23 105.4 4.3 59 13-71 2-60 (120)
6 1r29_A B-cell lymphoma 6 prote 99.7 1.2E-18 4E-23 105.7 5.0 62 10-71 3-64 (127)
7 3ga1_A Nucleus accumbens-assoc 99.7 1.7E-18 5.8E-23 105.5 5.3 68 8-75 5-72 (129)
8 3fkc_A Transcriptional regulat 99.7 2.3E-18 7.7E-23 103.7 5.0 62 8-69 3-64 (116)
9 1buo_A POZ domain, protein (pr 99.7 2.6E-18 8.7E-23 103.7 4.6 60 10-69 2-61 (121)
10 2ppi_A Gigaxonin; BTB domain, 99.7 2.3E-18 7.7E-23 107.1 3.9 62 9-70 20-81 (144)
11 2vpk_A Myoneurin; transcriptio 99.7 6.3E-18 2.2E-22 101.1 4.3 60 16-75 2-61 (116)
12 2yy9_A Zinc finger and BTB dom 99.7 1.1E-17 3.7E-22 102.9 4.7 61 15-75 4-64 (135)
13 2q81_A MIZ-1 protein; BTB/POZ 99.7 6.1E-18 2.1E-22 101.9 2.9 58 12-69 3-60 (119)
14 3hve_A Gigaxonin; ubiquitin, c 99.7 4.7E-17 1.6E-21 108.3 3.8 61 11-71 6-66 (256)
15 3i3n_A Kelch-like protein 11; 99.6 8.9E-17 3.1E-21 108.2 3.6 63 10-72 6-71 (279)
16 3htm_A Speckle-type POZ protei 99.6 1.4E-16 4.7E-21 100.1 0.9 57 16-72 14-70 (172)
17 4eoz_A Speckle-type POZ protei 99.5 2.6E-15 8.8E-20 92.0 1.1 52 20-71 9-60 (145)
18 2vkp_A BTB/POZ domain-containi 99.5 6.9E-15 2.4E-19 86.6 1.7 43 29-71 1-47 (109)
19 3m5b_A Zinc finger and BTB dom 99.5 1.8E-14 6.2E-19 87.1 2.2 52 11-64 7-58 (119)
20 3hqi_A Speckle-type POZ protei 99.4 1.4E-13 4.8E-18 93.6 3.7 51 21-71 159-209 (312)
21 4ajy_C Transcription elongatio 97.8 1.7E-05 5.8E-10 45.9 2.8 29 39-68 4-33 (97)
22 2ast_A S-phase kinase-associat 97.2 0.00018 6.1E-09 44.9 2.9 29 39-68 3-32 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 94.5 0.025 8.6E-07 34.4 2.7 30 39-69 4-34 (141)
24 1hv2_A Elongin C, ELC1; protei 91.5 0.13 4.5E-06 29.5 2.5 30 39-69 6-36 (99)
25 2p1m_A SKP1-like protein 1A; F 91.3 0.011 3.7E-07 36.8 -2.5 30 39-69 6-36 (160)
26 2fnj_C Transcription elongatio 91.2 0.15 5.3E-06 29.0 2.6 29 39-68 3-32 (96)
27 3drz_A BTB/POZ domain-containi 75.0 2 6.7E-05 24.6 2.3 32 38-69 7-39 (107)
28 3v7d_A Suppressor of kinetocho 61.2 4.3 0.00015 25.2 1.9 31 38-69 8-39 (169)
29 1vcb_B Protein (elongin C); tu 60.5 4.9 0.00017 23.3 1.9 31 38-69 18-49 (112)
30 1o6d_A Hypothetical UPF0247 pr 40.2 28 0.00097 21.6 3.1 25 19-45 79-103 (163)
31 1ns5_A Hypothetical protein YB 37.9 28 0.00097 21.3 2.9 25 19-45 80-104 (155)
32 1to0_A Hypothetical UPF0247 pr 29.5 87 0.003 19.3 4.1 27 19-46 84-110 (167)
33 2g2c_A Putative molybdenum cof 25.1 1.2E+02 0.004 18.2 4.6 31 14-46 49-79 (167)
34 3drx_A BTB/POZ domain-containi 24.6 49 0.0017 21.2 2.4 31 39-69 14-45 (202)
35 3s82_A S-adenosylmethionine sy 20.6 2.4E+02 0.0082 20.1 5.9 40 19-58 160-208 (407)
36 3iml_A S-adenosylmethionine sy 20.0 2.4E+02 0.0083 20.0 6.0 41 18-58 147-196 (399)
No 1
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.79 E-value=1.5e-19 Score=111.42 Aligned_cols=71 Identities=31% Similarity=0.483 Sum_probs=63.9
Q ss_pred CCCceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceEEe
Q psy12678 7 PVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVD 77 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~~~ 77 (80)
+++..+.+.++.|+..+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.++..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~ 77 (138)
T 2z8h_A 7 SESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVT 77 (138)
T ss_dssp CTTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEE
T ss_pred CCCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEE
Confidence 34577889999999999999999999999999999999999999999999999999999998876544443
No 2
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.79 E-value=1.7e-19 Score=109.23 Aligned_cols=70 Identities=30% Similarity=0.402 Sum_probs=63.2
Q ss_pred CCceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceEEe
Q psy12678 8 VDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVD 77 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~~~ 77 (80)
......++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++..+...+.
T Consensus 4 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~ 73 (125)
T 3ohu_A 4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVS 73 (125)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEE
T ss_pred CCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEE
Confidence 4567788999999999999999999999999999999999999999999999999999998876544443
No 3
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=108.68 Aligned_cols=68 Identities=31% Similarity=0.485 Sum_probs=59.7
Q ss_pred CceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceEE
Q psy12678 9 DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV 76 (80)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~~ 76 (80)
.+.+.++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++..+...+
T Consensus 2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i 69 (124)
T 2ihc_A 2 MSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNI 69 (124)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEE
T ss_pred CceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceE
Confidence 35778999999999999999999999999999999999999999999999999999999886554333
No 4
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.75 E-value=6.9e-19 Score=106.06 Aligned_cols=62 Identities=26% Similarity=0.522 Sum_probs=56.9
Q ss_pred eeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678 14 LRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC 75 (80)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~ 75 (80)
++|++|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++....+.
T Consensus 2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~~~i~ 63 (119)
T 3b84_A 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVV 63 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTTCCCEE
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCCCCeEE
Confidence 56789999999999999999999999999999999999999999999999999987644443
No 5
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.75 E-value=8.3e-19 Score=105.39 Aligned_cols=59 Identities=34% Similarity=0.578 Sum_probs=54.0
Q ss_pred EeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678 13 ALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG 71 (80)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~ 71 (80)
.++++.|+..+++.++++|+++.+|||++.++|+.|+|||.||+++|+||++||.++..
T Consensus 2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~ 60 (120)
T 2if5_A 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAV 60 (120)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC---
T ss_pred CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcc
Confidence 46789999999999999999999999999999999999999999999999999988743
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.75 E-value=1.2e-18 Score=105.72 Aligned_cols=62 Identities=24% Similarity=0.421 Sum_probs=57.2
Q ss_pred ceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678 10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG 71 (80)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~ 71 (80)
....++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++..
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~ 64 (127)
T 1r29_A 3 ADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK 64 (127)
T ss_dssp --CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTT
T ss_pred CCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCcc
Confidence 34568899999999999999999999999999999999999999999999999999998755
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=105.49 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=60.7
Q ss_pred CCceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678 8 VDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC 75 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~ 75 (80)
..+.+.++++.++..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++....+.
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~~~~~i~ 72 (129)
T 3ga1_A 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVE 72 (129)
T ss_dssp --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHCCCSEEE
T ss_pred CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCCCCCEEE
Confidence 45688899999999999999999999999999999999999999999999999999999887444333
No 8
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.73 E-value=2.3e-18 Score=103.69 Aligned_cols=62 Identities=31% Similarity=0.427 Sum_probs=58.2
Q ss_pred CCceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCC
Q psy12678 8 VDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSI 69 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~ 69 (80)
.++.+.+.++.|+..+++.++++|+++.+|||++.++|+.|+|||.||+++|+||+++|.++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~ 64 (116)
T 3fkc_A 3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA 64 (116)
T ss_dssp -CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC
T ss_pred cCceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC
Confidence 34677888999999999999999999999999999999999999999999999999999887
No 9
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.73 E-value=2.6e-18 Score=103.70 Aligned_cols=60 Identities=25% Similarity=0.367 Sum_probs=56.8
Q ss_pred ceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCC
Q psy12678 10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSI 69 (80)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~ 69 (80)
+.+.++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++
T Consensus 2 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~ 61 (121)
T 1buo_A 2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN 61 (121)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC
T ss_pred CceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC
Confidence 356788999999999999999999999999999999999999999999999999999876
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=107.14 Aligned_cols=62 Identities=29% Similarity=0.427 Sum_probs=56.3
Q ss_pred CceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCC
Q psy12678 9 DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSID 70 (80)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~ 70 (80)
-+.+.+.++.|+..+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.++.
T Consensus 20 ~~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~ 81 (144)
T 2ppi_A 20 FQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP 81 (144)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC
T ss_pred eeeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCC
Confidence 46678899999999999999999999999999999999999999999999999999998764
No 11
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.71 E-value=6.3e-18 Score=101.08 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=54.3
Q ss_pred echhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678 16 WNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC 75 (80)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~ 75 (80)
.+.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++....+.
T Consensus 2 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~~~i~ 61 (116)
T 2vpk_A 2 MSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVF 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCSCEE
T ss_pred chhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCCCCCeEE
Confidence 357899999999999999999999999999999999999999999999999987444443
No 12
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.70 E-value=1.1e-17 Score=102.88 Aligned_cols=61 Identities=25% Similarity=0.467 Sum_probs=50.8
Q ss_pred eechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678 15 RWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC 75 (80)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~ 75 (80)
.++.|...+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.++....+.
T Consensus 4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~~~i~ 64 (135)
T 2yy9_A 4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVV 64 (135)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC----CCEE
T ss_pred ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCCCCeEE
Confidence 4578999999999999999999999999999999999999999999999999987644333
No 13
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.69 E-value=6.1e-18 Score=101.88 Aligned_cols=58 Identities=33% Similarity=0.556 Sum_probs=53.6
Q ss_pred eEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCC
Q psy12678 12 FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSI 69 (80)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~ 69 (80)
..++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++
T Consensus 3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~ 60 (119)
T 2q81_A 3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ 60 (119)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC
T ss_pred cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC
Confidence 4567789999999999999999999999999999999999999999999999999875
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.65 E-value=4.7e-17 Score=108.32 Aligned_cols=61 Identities=28% Similarity=0.405 Sum_probs=49.4
Q ss_pred eeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678 11 QFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG 71 (80)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~ 71 (80)
...+.++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||+++..
T Consensus 6 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~ 66 (256)
T 3hve_A 6 GSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPP 66 (256)
T ss_dssp ----CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----
T ss_pred CCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCC
Confidence 4668899999999999999999999999999999999999999999999999999987643
No 15
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.64 E-value=8.9e-17 Score=108.20 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=55.4
Q ss_pred ceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeC---CeEEeceeeeecccCHHHHHhhcCCCCC
Q psy12678 10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACD---GCSFTAHKVVLSACSPYFKTLLKSIDGR 72 (80)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~---g~~~~~Hk~vLaa~S~~F~~~f~~~~~~ 72 (80)
+...+.++.|+..+++.|+++|+++.+|||+|.|+ |+.|+|||.||+++|+||++||+++..+
T Consensus 6 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e 71 (279)
T 3i3n_A 6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSE 71 (279)
T ss_dssp CEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC----
T ss_pred cccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCcc
Confidence 35678999999999999999999999999999998 9999999999999999999999987543
No 16
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.4e-16 Score=100.08 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=50.5
Q ss_pred echhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCC
Q psy12678 16 WNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR 72 (80)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~ 72 (80)
+...++.+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.++..+
T Consensus 14 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e 70 (172)
T 3htm_A 14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEE 70 (172)
T ss_dssp SCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCG
T ss_pred CCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccc
Confidence 334456788999999999999999999999999999999999999999999987543
No 17
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.50 E-value=2.6e-15 Score=91.96 Aligned_cols=52 Identities=27% Similarity=0.459 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678 20 QTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG 71 (80)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~ 71 (80)
++.+.+.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.++..
T Consensus 9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~ 60 (145)
T 4eoz_A 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME 60 (145)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSH
T ss_pred hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCc
Confidence 3467889999999999999999999999999999999999999999988643
No 18
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.48 E-value=6.9e-15 Score=86.60 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=36.9
Q ss_pred HHhhCCCceeEEEEeCC----eEEeceeeeecccCHHHHHhhcCCCC
Q psy12678 29 HLRDEEDFVDVTLACDG----CSFTAHKVVLSACSPYFKTLLKSIDG 71 (80)
Q Consensus 29 ~~~~~~~~~Dv~l~v~g----~~~~~Hk~vLaa~S~~F~~~f~~~~~ 71 (80)
++++++.+|||++.++| +.|+|||.||+++|+||++||.++..
T Consensus 1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~ 47 (109)
T 2vkp_A 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLA 47 (109)
T ss_dssp CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----
T ss_pred CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcc
Confidence 36789999999999998 89999999999999999999998754
No 19
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.45 E-value=1.8e-14 Score=87.12 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=44.7
Q ss_pred eeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHH
Q psy12678 11 QFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKT 64 (80)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~ 64 (80)
......+.+...+++.|+ |+++.+|||++.++|+.|+|||+|||++|+||++
T Consensus 7 p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~ 58 (119)
T 3m5b_A 7 PIRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR 58 (119)
T ss_dssp CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC
T ss_pred CCCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc
Confidence 344555667778888886 7789999999999999999999999999999985
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.39 E-value=1.4e-13 Score=93.56 Aligned_cols=51 Identities=27% Similarity=0.457 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678 21 TSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG 71 (80)
Q Consensus 21 ~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~ 71 (80)
..+.+.++++++++.++||+|.|+|+.|+|||.|||++|+||++||.++..
T Consensus 159 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~ 209 (312)
T 3hqi_A 159 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME 209 (312)
T ss_dssp CCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC---
T ss_pred chHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCcc
Confidence 467889999999999999999999999999999999999999999988643
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=97.75 E-value=1.7e-05 Score=45.93 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=25.7
Q ss_pred EEEEe-CCeEEeceeeeecccCHHHHHhhcC
Q psy12678 39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKS 68 (80)
Q Consensus 39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~ 68 (80)
|+|+. +|+.|.+||.+ |++|+||++||.+
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~ 33 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG 33 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHh
Confidence 55654 78999999999 9999999999987
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=97.25 E-value=0.00018 Score=44.91 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=26.3
Q ss_pred EEEEe-CCeEEeceeeeecccCHHHHHhhcC
Q psy12678 39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKS 68 (80)
Q Consensus 39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~ 68 (80)
|+|+. +|+.|.+||.+ |++|+||+.||.+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~ 32 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLED 32 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTS
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHh
Confidence 67765 79999999999 9999999999987
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=94.54 E-value=0.025 Score=34.43 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=26.2
Q ss_pred EEEEe-CCeEEeceeeeecccCHHHHHhhcCC
Q psy12678 39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKSI 69 (80)
Q Consensus 39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~~ 69 (80)
|+|+. +|+.|.+|+.+ |..|.+++.||.+.
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~ 34 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL 34 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc
Confidence 67776 78999999998 89999999999763
No 24
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=91.45 E-value=0.13 Score=29.47 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=26.2
Q ss_pred EEEEe-CCeEEeceeeeecccCHHHHHhhcCC
Q psy12678 39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKSI 69 (80)
Q Consensus 39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~~ 69 (80)
|+|+. +|+.|.+++.+ |..|.+++.||.++
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~ 36 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGP 36 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSS
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcc
Confidence 67765 89999999997 89999999999874
No 25
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=91.25 E-value=0.011 Score=36.83 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=12.2
Q ss_pred EEEEe-CCeEEeceeeeecccCHHHHHhhcCC
Q psy12678 39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKSI 69 (80)
Q Consensus 39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~~ 69 (80)
|+|.. +|+.|.+|+.+ |..|.+|+.||.+.
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~ 36 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD 36 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc
Confidence 56664 79999999998 88999999999765
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=91.23 E-value=0.15 Score=28.98 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=25.3
Q ss_pred EEEEe-CCeEEeceeeeecccCHHHHHhhcC
Q psy12678 39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKS 68 (80)
Q Consensus 39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~ 68 (80)
|+|+. +|+.|.+++.+ |..|.+++.||.+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~ 32 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG 32 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHc
Confidence 56665 88999999997 8899999999986
No 27
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=74.98 E-value=2 Score=24.63 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.2
Q ss_pred eEEEEeCCeEEeceeeeecccC-HHHHHhhcCC
Q psy12678 38 DVTLACDGCSFTAHKVVLSACS-PYFKTLLKSI 69 (80)
Q Consensus 38 Dv~l~v~g~~~~~Hk~vLaa~S-~~F~~~f~~~ 69 (80)
-|+|-|||+.|...+..|+... .+|.+||..+
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~ 39 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQAD 39 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTC
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcC
Confidence 3677899999999999998765 5778888754
No 28
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=61.22 E-value=4.3 Score=25.15 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=25.2
Q ss_pred eEEEEe-CCeEEeceeeeecccCHHHHHhhcCC
Q psy12678 38 DVTLAC-DGCSFTAHKVVLSACSPYFKTLLKSI 69 (80)
Q Consensus 38 Dv~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~~ 69 (80)
-|+|+. +|+.|.+++.+ |..|..++.|+...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~ 39 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDM 39 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc
Confidence 466765 78999999998 77899999999754
No 29
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=60.45 E-value=4.9 Score=23.29 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=25.5
Q ss_pred eEEEE-eCCeEEeceeeeecccCHHHHHhhcCC
Q psy12678 38 DVTLA-CDGCSFTAHKVVLSACSPYFKTLLKSI 69 (80)
Q Consensus 38 Dv~l~-v~g~~~~~Hk~vLaa~S~~F~~~f~~~ 69 (80)
-|+|+ .+|..|.+.+. .|..|..++.|+.+.
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~ 49 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGP 49 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhc
Confidence 36776 48899999999 478899999999753
No 30
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=40.23 E-value=28 Score=21.58 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHhhCCCceeEEEEeCC
Q psy12678 19 FQTSILSSFRHLRDEEDFVDVTLACDG 45 (80)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~Dv~l~v~g 45 (80)
.+..+.+.|++.+.++ .|+++++||
T Consensus 79 sS~~fA~~l~~~~~~G--~~i~FvIGG 103 (163)
T 1o6d_A 79 SSEEFADFLKDLEMKG--KDITILIGG 103 (163)
T ss_dssp CHHHHHHHHHHHHHHT--CCEEEEECC
T ss_pred CHHHHHHHHHHHHhcC--CeEEEEEEC
Confidence 4567778888888888 699999998
No 31
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=37.89 E-value=28 Score=21.33 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhhCCCceeEEEEeCC
Q psy12678 19 FQTSILSSFRHLRDEEDFVDVTLACDG 45 (80)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~Dv~l~v~g 45 (80)
.+..+.+.|++.+.++ .|+++++||
T Consensus 80 sS~~fA~~l~~~~~~g--~~i~FvIGG 104 (155)
T 1ns5_A 80 DTPQLAAELERWKLDG--RDVSLLIGG 104 (155)
T ss_dssp CHHHHHHHHHHHHHHC--SCEEEEECB
T ss_pred CHHHHHHHHHHHHhcC--CeEEEEEEC
Confidence 4566778888888888 699999998
No 32
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=29.47 E-value=87 Score=19.34 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhhCCCceeEEEEeCCe
Q psy12678 19 FQTSILSSFRHLRDEEDFVDVTLACDGC 46 (80)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~Dv~l~v~g~ 46 (80)
.+..+.+.|++++.++. .|+++++||-
T Consensus 84 sS~~fA~~l~~~~~~G~-~~i~FvIGGa 110 (167)
T 1to0_A 84 TSEELADTIDKLATYGK-SKVTFVIGGS 110 (167)
T ss_dssp CHHHHHHHHHHHHTTTC-CEEEEEECCS
T ss_pred CHHHHHHHHHHHHhcCC-ceEEEEEECC
Confidence 45567788888887774 3999999983
No 33
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=25.10 E-value=1.2e+02 Score=18.20 Aligned_cols=31 Identities=3% Similarity=0.081 Sum_probs=24.0
Q ss_pred eeechhHHHHHHHHHHHhhCCCceeEEEEeCCe
Q psy12678 14 LRWNDFQTSILSSFRHLRDEEDFVDVTLACDGC 46 (80)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~ 46 (80)
...++....+.+.++++.+++ +|++|..||-
T Consensus 49 ~iv~Dd~~~I~~~l~~a~~~~--~DlVittGG~ 79 (167)
T 2g2c_A 49 VVVPEGYDTVVEAIATALKQG--ARFIITAGGT 79 (167)
T ss_dssp EEECSSHHHHHHHHHHHHHTT--CSEEEEESCC
T ss_pred EEeCCCHHHHHHHHHHHHhCC--CCEEEECCCC
Confidence 345677778888898887654 8999999874
No 34
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=24.59 E-value=49 Score=21.22 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=24.8
Q ss_pred EEEEeCCeEEeceeeeecccC-HHHHHhhcCC
Q psy12678 39 VTLACDGCSFTAHKVVLSACS-PYFKTLLKSI 69 (80)
Q Consensus 39 v~l~v~g~~~~~Hk~vLaa~S-~~F~~~f~~~ 69 (80)
|+|-|||+.|...+..|.... .+|..||.+.
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~ 45 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQAD 45 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCC
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCc
Confidence 667899999999999998754 4778888754
No 35
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=20.58 E-value=2.4e+02 Score=20.14 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhhCCCc----ee----EEEEe-CCeEEeceeeeeccc
Q psy12678 19 FQTSILSSFRHLRDEEDF----VD----VTLAC-DGCSFTAHKVVLSAC 58 (80)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~----~D----v~l~v-~g~~~~~Hk~vLaa~ 58 (80)
....+...|.++|+++.+ .| ||+.. +|+..+.|.+|+++.
T Consensus 160 lAH~L~~rla~~Rk~g~l~~LrPD~KtQVTveY~~~~P~rv~tvViStQ 208 (407)
T 3s82_A 160 LAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIEFEDDVPVRLDTVVISTQ 208 (407)
T ss_dssp HHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCeecCCCceEEEEEEECCceeeEEEEEEEee
Confidence 466788899999998754 44 66644 578999999999763
No 36
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=20.04 E-value=2.4e+02 Score=20.04 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhhCCCc----ee----EEEEe-CCeEEeceeeeeccc
Q psy12678 18 DFQTSILSSFRHLRDEEDF----VD----VTLAC-DGCSFTAHKVVLSAC 58 (80)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~----~D----v~l~v-~g~~~~~Hk~vLaa~ 58 (80)
.....+...|.++|+++.+ .| ||+.. +|+..+.|.+|+++.
T Consensus 147 ~lAH~L~~rl~~~Rk~g~l~~LrPD~KtQVTveY~~~~P~rv~tvViStQ 196 (399)
T 3iml_A 147 HLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGKPHSIDTVVLSTQ 196 (399)
T ss_dssp HHHHHHHHHHHHHHHTTSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCeecCCCceEEEEEEECCceeeEEEEEEEee
Confidence 3466788899999998754 34 66654 578999999999763
Done!