RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12678
         (80 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 57.1 bits (137), Expect = 6e-13
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 14 LRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          +++    + +L +   LR  +   DV +      F AHK VL ACS  F ++   
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD 57


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
          protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 54.6 bits (131), Expect = 6e-12
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 14 LRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFK 63
          L+     T +L     +R      DV +  D   F AH+ VL+  S  F+
Sbjct: 6  LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE 55


>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 310

 Score = 26.8 bits (59), Expect = 0.27
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 36  FVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVDTA 79
           FV   L     SF+     L+     FKTL +S +G+   +   
Sbjct: 67  FVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVM 110


>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
          40051]}
          Length = 845

 Score = 23.3 bits (50), Expect = 4.4
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 1  MGGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFV 37
          M  VG  + +        F ++I+   R +R +  F+
Sbjct: 55 MSQVGDVITEDEPE---KFYSTIIKKVRFIRGKGSFI 88


>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3
          and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 22.5 bits (48), Expect = 6.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 16 WNDFQTSILSSFRHLRDEEDFVDVTL 41
          +ND+ + I   +   +D +  V+VTL
Sbjct: 12 YNDYTSHITCRWADTQDAQRLVNVTL 37


>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase
          {Thermobifida fusca [TaxId: 2021]}
          Length = 235

 Score = 22.4 bits (46), Expect = 8.0
 Identities = 6/38 (15%), Positives = 13/38 (34%)

Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVV 54
           DF  ++  +     +  DF    +   G   +  +V 
Sbjct: 11 KDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVS 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,854
Number of extensions: 11730
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 7
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)