BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12679
         (76 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I6E|A Chain A, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|B Chain B, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|C Chain C, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|D Chain D, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|E Chain E, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|F Chain F, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|G Chain G, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|H Chain H, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
          Length = 301

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 22  EHDMEALLSFMYNGEVRIGQDQLQEF 47
           E   E+LL+  Y+G +RIG D L+E+
Sbjct: 137 EGTAESLLAAGYDGVLRIGDDALREW 162


>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
           Resolution
 pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
           Resolution
          Length = 297

 Score = 26.2 bits (56), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 25  MEALLSFMYNGEVRIGQDQLQEFLKTA 51
           +EA++ +MY G +R+    + E L+ A
Sbjct: 111 VEAVIEYMYTGRIRVSTGSVHEVLELA 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,110,231
Number of Sequences: 62578
Number of extensions: 62606
Number of successful extensions: 96
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 6
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)