Query psy12679
Match_columns 76
No_of_seqs 197 out of 1031
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 16:42:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02790 Kelch-like protein; P 99.8 7.2E-21 1.6E-25 130.2 3.2 74 1-75 47-124 (480)
2 KOG4441|consensus 99.8 1.1E-19 2.5E-24 126.6 4.1 75 1-75 62-138 (571)
3 PHA02713 hypothetical protein; 99.8 4.9E-19 1.1E-23 123.1 4.8 73 1-75 52-127 (557)
4 PHA03098 kelch-like protein; P 99.7 1.4E-17 3.1E-22 114.5 4.9 73 1-75 37-109 (534)
5 PF00651 BTB: BTB/POZ domain; 99.5 9.5E-15 2.1E-19 82.1 3.3 70 1-70 37-110 (111)
6 smart00225 BTB Broad-Complex, 99.5 2.6E-14 5.7E-19 76.5 4.8 64 1-64 25-90 (90)
7 KOG4682|consensus 99.1 4.6E-11 1E-15 80.6 4.2 75 1-75 94-174 (488)
8 KOG2075|consensus 99.1 1.3E-10 2.9E-15 79.6 3.9 74 1-74 145-220 (521)
9 KOG4350|consensus 98.9 7.5E-10 1.6E-14 75.4 3.4 75 1-75 70-149 (620)
10 KOG4591|consensus 98.2 8.7E-07 1.9E-11 55.9 2.2 64 12-75 105-170 (280)
11 KOG1724|consensus 98.0 1.4E-05 3E-10 48.6 4.4 59 13-71 44-127 (162)
12 KOG2716|consensus 97.9 1.7E-05 3.7E-10 50.6 3.9 69 1-70 30-104 (230)
13 PF11822 DUF3342: Domain of un 97.8 5.9E-06 1.3E-10 54.8 0.7 62 12-73 44-106 (317)
14 PF02214 BTB_2: BTB/POZ domain 97.8 3.8E-05 8.3E-10 42.2 3.3 52 11-63 40-94 (94)
15 smart00512 Skp1 Found in Skp1 97.7 7.8E-05 1.7E-09 41.9 4.4 44 13-56 42-104 (104)
16 KOG3473|consensus 97.5 0.0004 8.7E-09 39.1 5.0 54 2-55 43-111 (112)
17 KOG0783|consensus 97.5 5.2E-05 1.1E-09 56.0 1.8 75 1-75 737-819 (1267)
18 PF01466 Skp1: Skp1 family, di 97.1 0.00037 7.9E-09 37.5 2.1 36 38-73 10-45 (78)
19 KOG1665|consensus 96.5 0.0032 7E-08 40.6 3.1 63 3-65 38-105 (302)
20 PF03931 Skp1_POZ: Skp1 family 96.0 0.0085 1.8E-07 30.7 2.7 33 2-34 27-59 (62)
21 COG5201 SKP1 SCF ubiquitin lig 95.9 0.015 3.3E-07 34.5 3.6 60 13-72 39-123 (158)
22 KOG2714|consensus 95.5 0.019 4.1E-07 39.9 3.3 46 15-61 56-102 (465)
23 KOG0511|consensus 95.1 0.025 5.3E-07 39.1 2.9 57 1-57 316-378 (516)
24 KOG3840|consensus 93.3 0.085 1.8E-06 35.6 2.6 47 12-58 138-186 (438)
25 KOG1987|consensus 92.4 0.06 1.3E-06 34.9 0.9 61 13-73 140-203 (297)
26 KOG0783|consensus 90.2 0.45 9.8E-06 36.2 3.6 52 11-62 608-680 (1267)
27 KOG2715|consensus 87.1 0.46 1E-05 29.6 1.7 55 15-69 66-120 (210)
28 KOG2838|consensus 85.2 0.45 9.6E-06 31.9 1.0 64 12-75 299-392 (401)
29 PF00356 LacI: Bacterial regul 84.1 3.4 7.4E-05 19.9 3.9 35 18-56 9-43 (46)
30 KOG2723|consensus 82.8 1.6 3.4E-05 28.0 2.8 49 14-63 52-102 (221)
31 PHA03098 kelch-like protein; P 78.6 1.9 4.2E-05 30.2 2.3 35 38-72 104-138 (534)
32 PF06200 tify: tify domain; I 76.9 2.6 5.5E-05 19.4 1.7 21 32-52 11-35 (36)
33 PF07707 BACK: BTB And C-termi 75.9 1.9 4E-05 23.2 1.4 27 46-72 3-29 (103)
34 KOG4682|consensus 70.2 2.7 5.9E-05 29.6 1.3 33 38-70 169-201 (488)
35 KOG3713|consensus 69.1 3.6 7.8E-05 29.3 1.8 52 13-65 81-134 (477)
36 KOG2838|consensus 68.8 13 0.00027 25.2 4.1 44 14-57 173-219 (401)
37 cd01392 HTH_LacI Helix-turn-he 66.2 13 0.00028 17.4 4.2 36 18-57 7-42 (52)
38 PF09116 gp45-slide_C: gp45 sl 63.9 7 0.00015 22.5 2.0 23 38-60 5-27 (112)
39 smart00875 BACK BTB And C-term 62.9 4.9 0.00011 21.2 1.2 26 46-71 3-28 (101)
40 smart00354 HTH_LACI helix_turn 62.6 20 0.00042 18.3 4.0 35 19-57 11-45 (70)
41 TIGR01481 ccpA catabolite cont 60.2 19 0.00042 23.2 3.8 36 18-57 11-46 (329)
42 KOG4350|consensus 58.1 1.5 3.3E-05 31.0 -1.6 31 39-69 145-175 (620)
43 cd00014 CH Calponin homology d 56.2 30 0.00066 18.5 4.3 39 21-59 31-79 (107)
44 PRK10423 transcriptional repre 55.6 26 0.00057 22.5 3.9 35 18-56 8-42 (327)
45 PRK10727 DNA-binding transcrip 55.6 25 0.00054 22.9 3.8 36 18-57 11-46 (343)
46 PF06404 PSK: Phytosulfokine p 55.6 3.6 7.9E-05 22.3 -0.1 12 24-35 66-77 (81)
47 PF12926 MOZART2: Mitotic-spin 53.6 37 0.00081 18.8 3.6 29 19-50 40-68 (88)
48 PRK09526 lacI lac repressor; R 51.9 32 0.0007 22.3 3.9 35 18-56 15-49 (342)
49 KOG3368|consensus 51.9 11 0.00025 22.4 1.5 26 9-34 77-102 (140)
50 PRK10014 DNA-binding transcrip 50.6 36 0.00079 22.0 4.0 36 18-57 16-51 (342)
51 PRK11303 DNA-binding transcrip 48.4 42 0.00092 21.6 4.0 35 18-56 10-47 (328)
52 TIGR02417 fruct_sucro_rep D-fr 48.2 41 0.0009 21.6 3.9 36 18-57 9-47 (327)
53 TIGR01913 bet_lambda phage rec 47.8 43 0.00094 20.9 3.8 38 24-63 18-55 (188)
54 PHA02790 Kelch-like protein; P 46.8 13 0.00028 26.1 1.5 34 38-71 119-152 (480)
55 PRK09492 treR trehalose repres 45.1 44 0.00096 21.3 3.7 36 18-57 14-49 (315)
56 PRK10401 DNA-binding transcrip 43.6 53 0.0012 21.4 3.9 35 18-56 11-45 (346)
57 KOG4390|consensus 42.6 56 0.0012 23.4 4.0 52 19-70 85-138 (632)
58 PF11227 DUF3025: Protein of u 42.4 21 0.00045 22.9 1.8 41 31-72 19-60 (212)
59 PRK14987 gluconate operon tran 41.6 53 0.0011 21.2 3.7 36 18-57 15-50 (331)
60 PF05225 HTH_psq: helix-turn-h 41.2 28 0.00061 16.4 1.8 29 22-58 2-30 (45)
61 PRK10703 DNA-binding transcrip 40.8 63 0.0014 20.9 3.9 37 18-58 11-47 (341)
62 COG1939 Ribonuclease III famil 40.6 51 0.0011 19.6 3.1 28 21-51 99-126 (132)
63 smart00845 GatB_Yqey GatB doma 40.5 69 0.0015 18.8 3.7 20 19-38 38-57 (147)
64 COG1609 PurR Transcriptional r 39.8 65 0.0014 21.5 3.9 36 18-57 10-45 (333)
65 COG2058 RPP1A Ribosomal protei 39.0 37 0.0008 19.5 2.3 21 31-52 10-30 (109)
66 TIGR03685 L21P_arch 50S riboso 39.0 35 0.00077 19.3 2.2 20 33-52 11-30 (105)
67 cd02144 iodotyrosine_dehalogen 38.9 33 0.00072 20.5 2.3 16 19-34 18-33 (193)
68 cd02135 Arsenite_oxidase Nitro 37.8 37 0.0008 19.6 2.3 16 19-34 17-32 (160)
69 cd05832 Ribosomal_L12p Ribosom 37.7 36 0.00079 19.4 2.1 19 34-52 12-30 (106)
70 cd02148 Nitroreductase_5 Nitro 37.7 36 0.00077 20.5 2.3 14 20-33 20-33 (185)
71 TIGR02405 trehalos_R_Ecol treh 36.1 83 0.0018 20.2 3.9 36 18-57 11-46 (311)
72 PF02637 GatB_Yqey: GatB domai 36.1 89 0.0019 18.2 3.8 20 19-38 39-58 (148)
73 PF15125 TMEM238: TMEM238 prot 35.8 16 0.00035 19.0 0.5 13 31-43 52-64 (65)
74 PRK06402 rpl12p 50S ribosomal 34.9 41 0.00089 19.2 2.1 18 35-52 13-30 (106)
75 PF00633 HHH: Helix-hairpin-he 34.6 42 0.0009 14.5 1.7 17 15-31 14-30 (30)
76 COG2450 Uncharacterized conser 33.6 56 0.0012 19.2 2.5 25 15-39 43-68 (124)
77 cd05831 Ribosomal_P1 Ribosomal 33.1 45 0.00097 18.8 2.0 21 32-52 11-31 (103)
78 smart00483 POLXc DNA polymeras 32.4 50 0.0011 22.3 2.5 24 15-38 51-74 (334)
79 TIGR03553 F420_FbiB_CTERM F420 32.3 49 0.0011 19.9 2.3 15 20-34 17-31 (194)
80 COG3033 TnaA Tryptophanase [Am 32.2 41 0.0009 23.8 2.1 46 19-64 168-228 (471)
81 cd03740 SOCS_SOCS6 SOCS (suppr 31.9 23 0.0005 16.6 0.6 19 55-73 2-20 (41)
82 PHA02277 hypothetical protein 31.8 90 0.002 18.6 3.2 30 18-47 10-42 (150)
83 PF04699 P16-Arc: ARP2/3 compl 31.5 28 0.0006 21.1 1.1 24 17-40 95-118 (152)
84 cd02143 NADH_nitroreductase Ni 31.1 54 0.0012 18.9 2.3 15 38-52 15-29 (147)
85 PF11459 DUF2893: Protein of u 31.1 82 0.0018 16.6 2.7 25 35-59 29-53 (69)
86 PF02291 TFIID-31kDa: Transcri 30.1 31 0.00066 20.3 1.0 17 18-34 28-44 (129)
87 PF05391 Lsm_interact: Lsm int 29.8 14 0.00029 15.0 -0.3 6 1-6 15-20 (21)
88 PF04472 DUF552: Protein of un 29.0 84 0.0018 16.2 2.6 21 14-34 26-46 (73)
89 cd02139 Nitroreductase_3 Nitro 28.8 62 0.0014 18.8 2.3 16 19-34 18-33 (164)
90 cd02137 Nitroreductase_1 Nitro 28.7 66 0.0014 18.5 2.4 17 19-35 18-34 (148)
91 PF07894 DUF1669: Protein of u 28.6 98 0.0021 20.8 3.3 39 20-58 158-200 (284)
92 PRK10339 DNA-binding transcrip 28.5 1E+02 0.0022 19.9 3.4 35 18-56 11-47 (327)
93 cd07979 TAF9 TATA Binding Prot 28.4 55 0.0012 18.8 1.9 17 18-34 17-33 (117)
94 cd03717 SOCS_SOCS_like SOCS (s 28.3 32 0.00069 15.7 0.8 19 55-73 2-20 (39)
95 cd03742 SOCS_Rab40 SOCS (suppr 28.3 23 0.00051 16.9 0.3 18 56-73 3-20 (43)
96 PF09601 DUF2459: Protein of u 27.7 94 0.002 19.1 3.0 23 11-34 90-112 (173)
97 PF12542 CWC25: Pre-mRNA splic 27.7 20 0.00042 19.6 -0.0 9 29-37 7-15 (96)
98 cd02136 Nitroreductase Nitrore 27.5 68 0.0015 18.9 2.3 15 20-34 19-33 (178)
99 PRK05365 malonic semialdehyde 27.3 67 0.0014 19.5 2.3 14 38-51 26-39 (195)
100 PF11834 DUF3354: Domain of un 27.0 50 0.0011 17.3 1.4 23 35-57 19-42 (69)
101 PF07498 Rho_N: Rho terminatio 26.7 81 0.0017 14.6 2.5 27 42-68 5-31 (43)
102 COG0643 CheA Chemotaxis protei 26.6 83 0.0018 23.8 3.0 34 22-55 67-100 (716)
103 PF01922 SRP19: SRP19 protein; 26.4 53 0.0011 18.1 1.6 24 38-61 25-48 (95)
104 COG3040 Blc Bacterial lipocali 26.3 56 0.0012 20.3 1.8 27 31-57 136-162 (174)
105 cd01306 PhnM PhnM is believed 26.2 1.6E+02 0.0036 19.8 4.1 43 18-60 139-181 (325)
106 PF12816 Vps8: Golgi CORVET co 26.1 1E+02 0.0022 19.2 3.0 40 17-56 17-67 (196)
107 PF11971 CAMSAP_CH: CAMSAP CH 26.0 31 0.00067 18.7 0.5 47 21-67 22-69 (85)
108 PF01843 DIL: DIL domain; Int 25.6 56 0.0012 17.9 1.6 34 24-57 36-70 (105)
109 PRK05848 nicotinate-nucleotide 25.5 1.4E+02 0.0031 19.7 3.7 51 10-60 201-260 (273)
110 cd02062 Nitro_FMN_reductase Pr 25.3 83 0.0018 17.0 2.3 15 38-52 14-28 (122)
111 PRK10880 adenine DNA glycosyla 24.7 1.1E+02 0.0024 21.0 3.1 38 13-50 110-147 (350)
112 PF07137 VDE: Violaxanthin de- 24.6 50 0.0011 21.0 1.3 28 31-58 151-178 (198)
113 PF13013 F-box-like_2: F-box-l 24.4 1E+02 0.0022 17.6 2.5 45 9-53 14-58 (109)
114 PRK04021 hypothetical protein; 24.2 1.1E+02 0.0025 16.8 2.6 22 9-30 70-91 (92)
115 PRK13910 DNA glycosylase MutY; 24.0 1.3E+02 0.0029 20.1 3.3 37 13-49 73-109 (289)
116 PF13932 GIDA_assoc_3: GidA as 23.6 66 0.0014 16.8 1.5 14 16-29 58-71 (72)
117 COG3113 Predicted NTP binding 23.3 52 0.0011 18.6 1.1 47 14-60 43-96 (99)
118 cd02151 NADPH_oxidoreductase_2 22.9 94 0.002 18.1 2.3 18 18-35 17-34 (162)
119 PHA02545 45 sliding clamp; Pro 22.8 84 0.0018 20.4 2.1 23 38-60 117-139 (223)
120 KOG3380|consensus 22.7 32 0.0007 20.9 0.2 20 18-37 96-115 (152)
121 PF12112 DUF3579: Protein of u 22.6 18 0.00039 20.2 -0.8 24 17-40 65-88 (92)
122 PF02969 TAF: TATA box binding 22.6 87 0.0019 16.2 1.8 25 47-71 9-33 (66)
123 PRK10765 nitroreductase A; Pro 22.5 91 0.002 19.8 2.3 14 20-33 22-35 (240)
124 cd02149 NfsB_like_nitroreducta 22.4 1E+02 0.0022 17.9 2.4 16 19-34 20-35 (157)
125 PRK09016 quinolinate phosphori 22.4 1.8E+02 0.0039 19.6 3.7 51 10-61 227-284 (296)
126 PF14769 CLAMP: Flagellar C1a 22.0 53 0.0012 18.1 1.0 19 17-35 61-79 (101)
127 PRK08385 nicotinate-nucleotide 21.7 1.8E+02 0.0038 19.4 3.5 51 10-60 201-262 (278)
128 PF00588 SpoU_methylase: SpoU 21.7 90 0.0019 17.9 2.0 22 40-61 11-32 (142)
129 PF12010 DUF3502: Domain of un 21.5 1.8E+02 0.0039 16.8 3.4 46 25-71 85-130 (134)
130 KOG2830|consensus 20.8 34 0.00073 23.4 0.1 35 3-43 53-90 (324)
131 PRK05449 aspartate alpha-decar 20.7 56 0.0012 19.3 0.9 23 33-59 22-44 (126)
132 KOG2879|consensus 20.7 53 0.0011 22.1 0.9 35 21-55 145-179 (298)
133 PRK00979 tetrahydromethanopter 20.3 1E+02 0.0022 21.0 2.2 54 12-65 96-156 (308)
134 PRK10828 putative oxidoreducta 20.3 1.1E+02 0.0024 18.4 2.3 15 20-34 21-35 (183)
135 PRK10702 endonuclease III; Pro 20.3 1.5E+02 0.0032 18.8 2.9 38 13-50 110-147 (211)
136 TIGR00223 panD L-aspartate-alp 20.0 59 0.0013 19.2 0.9 23 33-59 22-44 (126)
137 PF00881 Nitroreductase: Nitro 20.0 78 0.0017 17.9 1.5 18 33-51 10-27 (165)
138 cd06919 Asp_decarbox Aspartate 20.0 59 0.0013 18.8 0.9 23 33-59 21-43 (111)
No 1
>PHA02790 Kelch-like protein; Provisional
Probab=99.81 E-value=7.2e-21 Score=130.18 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=67.0
Q ss_pred ChhhccC--CCCCCCeEEe--CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679 1 MMKYIYA--NPCEHPIVIL--RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK 75 (76)
Q Consensus 1 Fr~lf~~--~e~~~~~i~l--~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~ 75 (76)
||+||++ .|+++ .|.+ .++++++++.||+|+|||++.|+.+||+++++||++||+++++++|++||.+.+++.+
T Consensus 47 FraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~N 124 (480)
T PHA02790 47 FRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEY 124 (480)
T ss_pred HHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcch
Confidence 8999988 35543 4554 4999999999999999999999999999999999999999999999999999999875
No 2
>KOG4441|consensus
Probab=99.78 E-value=1.1e-19 Score=126.64 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=71.9
Q ss_pred ChhhccC--CCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679 1 MMKYIYA--NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK 75 (76)
Q Consensus 1 Fr~lf~~--~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~ 75 (76)
||+||++ .|+.+.+|.+.++++.+++.+++|+|||++.|+.+||++++.||++|||+.+++.|++||.+++.+.+
T Consensus 62 FraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~N 138 (571)
T KOG4441|consen 62 FRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSN 138 (571)
T ss_pred HHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHH
Confidence 8999997 58889999999999999999999999999999999999999999999999999999999999998764
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.76 E-value=4.9e-19 Score=123.10 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=67.4
Q ss_pred ChhhccCC--CC-CCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679 1 MMKYIYAN--PC-EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK 75 (76)
Q Consensus 1 Fr~lf~~~--e~-~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~ 75 (76)
||+||++. |+ .+++|.|+++++++++.+|+|+|||+ |+++||+++|.||++||++.+++.|++||.+++++.+
T Consensus 52 F~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~N 127 (557)
T PHA02713 52 FRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDT 127 (557)
T ss_pred HHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccc
Confidence 89999884 44 47899999999999999999999997 6899999999999999999999999999999998865
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.70 E-value=1.4e-17 Score=114.49 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=68.2
Q ss_pred ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679 1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK 75 (76)
Q Consensus 1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~ 75 (76)
||+||++... +.+|.|++ ++++|+.+|+|+|||++.++.+++.+++.+|++||++.|++.|++++.+.+++++
T Consensus 37 F~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n 109 (534)
T PHA03098 37 FKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN 109 (534)
T ss_pred HHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence 7899988655 78899999 9999999999999999999999999999999999999999999999999988754
No 5
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.52 E-value=9.5e-15 Score=82.10 Aligned_cols=70 Identities=29% Similarity=0.417 Sum_probs=62.1
Q ss_pred ChhhccCC-CCCC--CeEEeCCCCHHHHHHHhhhHhcCccccC-HHhHHHHHHHHhhcCccchhhcChhhHHhh
Q psy12679 1 MMKYIYAN-PCEH--PIVILRDVKEHDMEALLSFMYNGEVRIG-QDQLQEFLKTAQTLQVRGLTDVPPKDHYKF 70 (76)
Q Consensus 1 Fr~lf~~~-e~~~--~~i~l~~v~~~~~~~ll~f~Ytg~l~i~-~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~ 70 (76)
|+.||.+. .... .+|.++++++++|+.+++|+|+|++.++ .+++.+++.+|++|+++.+++.|.+++.+.
T Consensus 37 F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 37 FRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 67788775 2332 3688999999999999999999999998 999999999999999999999999999764
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.52 E-value=2.6e-14 Score=76.52 Aligned_cols=64 Identities=27% Similarity=0.493 Sum_probs=57.8
Q ss_pred ChhhccCCCC--CCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcCh
Q psy12679 1 MMKYIYANPC--EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPP 64 (76)
Q Consensus 1 Fr~lf~~~e~--~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~ 64 (76)
|+.||.+... ....+.++++++.+|+.+++|+|+|++.++.+++.+++.+|++|+++++.+.|+
T Consensus 25 f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 25 FKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 5778876433 567899999999999999999999999999999999999999999999999985
No 7
>KOG4682|consensus
Probab=99.15 E-value=4.6e-11 Score=80.65 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=69.0
Q ss_pred ChhhccC--CCCCCCeEEe----CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhc
Q psy12679 1 MMKYIYA--NPCEHPIVIL----RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNAR 74 (76)
Q Consensus 1 Fr~lf~~--~e~~~~~i~l----~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~ 74 (76)
|++||.+ .|++...|.+ +.|+..++...+.-+|..++.|..+.|..++.||.++|++++.+.|.+-+++.++++
T Consensus 94 f~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspk 173 (488)
T KOG4682|consen 94 FKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPK 173 (488)
T ss_pred HHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChh
Confidence 6889988 5777776665 579999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy12679 75 K 75 (76)
Q Consensus 75 ~ 75 (76)
+
T Consensus 174 t 174 (488)
T KOG4682|consen 174 T 174 (488)
T ss_pred h
Confidence 5
No 8
>KOG2075|consensus
Probab=99.07 E-value=1.3e-10 Score=79.59 Aligned_cols=74 Identities=26% Similarity=0.250 Sum_probs=67.1
Q ss_pred ChhhccCC--CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhc
Q psy12679 1 MMKYIYAN--PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNAR 74 (76)
Q Consensus 1 Fr~lf~~~--e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~ 74 (76)
|.+||.+. +....+|.+++|.+.+|..+|.|+|+..+.+..+++..++.+|+++-++.+.+.|.+++.+.+.+.
T Consensus 145 FdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~ 220 (521)
T KOG2075|consen 145 FDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMAD 220 (521)
T ss_pred HHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCh
Confidence 67788773 444679999999999999999999999999999999999999999999999999999998887653
No 9
>KOG4350|consensus
Probab=98.93 E-value=7.5e-10 Score=75.38 Aligned_cols=75 Identities=17% Similarity=0.385 Sum_probs=66.7
Q ss_pred ChhhccC--CCCCCCeEEeCCCCHHHHHHHhhhHhcCcccc---CHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679 1 MMKYIYA--NPCEHPIVILRDVKEHDMEALLSFMYNGEVRI---GQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK 75 (76)
Q Consensus 1 Fr~lf~~--~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i---~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~ 75 (76)
||+|+-+ .|+.+..|.|++-+.++|+.+|.|||||++.+ .++-..+.|..|.+++++++..+-.+|+.+.++-++
T Consensus 70 FRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~N 149 (620)
T KOG4350|consen 70 FRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNEN 149 (620)
T ss_pred HHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccc
Confidence 7888765 57888999999999999999999999999965 678888999999999999999999999998887654
No 10
>KOG4591|consensus
Probab=98.20 E-value=8.7e-07 Score=55.89 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=54.5
Q ss_pred CCeEEeCCCCHHHHHHHhhhHhcCccccC--HHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679 12 HPIVILRDVKEHDMEALLSFMYNGEVRIG--QDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK 75 (76)
Q Consensus 12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~--~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~ 75 (76)
..+..+.+++++++...+.++||.++... ..-+.++.+.|..+|+..+.+.|++-+-.-++.++
T Consensus 105 se~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~N 170 (280)
T KOG4591|consen 105 SEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDN 170 (280)
T ss_pred hhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhh
Confidence 44667889999999999999999999874 45667899999999999999999988777666654
No 11
>KOG1724|consensus
Probab=97.99 E-value=1.4e-05 Score=48.63 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=51.5
Q ss_pred CeEEeCCCCHHHHHHHhhhHhcCcc-------------------------ccCHHhHHHHHHHHhhcCccchhhcChhhH
Q psy12679 13 PIVILRDVKEHDMEALLSFMYNGEV-------------------------RIGQDQLQEFLKTAQTLQVRGLTDVPPKDH 67 (76)
Q Consensus 13 ~~i~l~~v~~~~~~~ll~f~Ytg~l-------------------------~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l 67 (76)
..|.|++|++.+|+.+++|++-.+- .++..++.+++.||++|+|++|.+.|++..
T Consensus 44 ~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~v 123 (162)
T KOG1724|consen 44 DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTV 123 (162)
T ss_pred CccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 4799999999999999999998552 245679999999999999999999999988
Q ss_pred Hhhh
Q psy12679 68 YKFL 71 (76)
Q Consensus 68 ~~~~ 71 (76)
...+
T Consensus 124 a~mi 127 (162)
T KOG1724|consen 124 ANMI 127 (162)
T ss_pred HHHH
Confidence 7665
No 12
>KOG2716|consensus
Probab=97.91 E-value=1.7e-05 Score=50.62 Aligned_cols=69 Identities=17% Similarity=0.392 Sum_probs=54.3
Q ss_pred ChhhccCC---CC-CCCeEEeCCCCHHHHHHHhhhHhcCcccc--CHHhHHHHHHHHhhcCccchhhcChhhHHhh
Q psy12679 1 MMKYIYAN---PC-EHPIVILRDVKEHDMEALLSFMYNGEVRI--GQDQLQEFLKTAQTLQVRGLTDVPPKDHYKF 70 (76)
Q Consensus 1 Fr~lf~~~---e~-~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i--~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~ 70 (76)
|++||.+. +. ....|.|+ =||..|..||+||=.|.+.+ +..++.++++=|.+|.+.+|++.|...+...
T Consensus 30 fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 30 FKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 56777663 22 22346654 79999999999999888877 5567789999999999999999999876544
No 13
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.81 E-value=5.9e-06 Score=54.75 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=54.8
Q ss_pred CCeEEeC-CCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhh
Q psy12679 12 HPIVILR-DVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNA 73 (76)
Q Consensus 12 ~~~i~l~-~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~ 73 (76)
.+.|.|. ..+..+|+=|++|+......++++||-.++-.|++|||++|++.|-.|+.+++++
T Consensus 44 ~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~ 106 (317)
T PF11822_consen 44 WEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSE 106 (317)
T ss_pred CCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHH
Confidence 3445543 4789999999999999999999999999999999999999999999999888764
No 14
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.76 E-value=3.8e-05 Score=42.20 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=39.6
Q ss_pred CCCeEEeCCCCHHHHHHHhhhHhc-CccccC-HHhHHHHHHHHhhcCccch-hhcC
Q psy12679 11 EHPIVILRDVKEHDMEALLSFMYN-GEVRIG-QDQLQEFLKTAQTLQVRGL-TDVP 63 (76)
Q Consensus 11 ~~~~i~l~~v~~~~~~~ll~f~Yt-g~l~i~-~~~v~~ll~aA~~lqi~~l-~~~C 63 (76)
....+.+ |-+|..|+.||+|+-+ |.+..+ ...+..+++-|.+++++++ ++.|
T Consensus 40 ~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 40 DDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp TTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 4556666 4799999999999999 677764 6788899999999999999 8887
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.73 E-value=7.8e-05 Score=41.90 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=37.4
Q ss_pred CeEEeCCCCHHHHHHHhhhHhcCcc-------------------ccCHHhHHHHHHHHhhcCc
Q psy12679 13 PIVILRDVKEHDMEALLSFMYNGEV-------------------RIGQDQLQEFLKTAQTLQV 56 (76)
Q Consensus 13 ~~i~l~~v~~~~~~~ll~f~Ytg~l-------------------~i~~~~v~~ll~aA~~lqi 56 (76)
..|.+++|++..++.+++|++-.+- .++.+.+.+++.||++|+|
T Consensus 42 ~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 42 NPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred CCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5899999999999999999985421 1677799999999999986
No 16
>KOG3473|consensus
Probab=97.50 E-value=0.0004 Score=39.12 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=45.6
Q ss_pred hhhccC----CCCCCCeEEeCCCCHHHHHHHhhhH-----hcCc------cccCHHhHHHHHHHHhhcC
Q psy12679 2 MKYIYA----NPCEHPIVILRDVKEHDMEALLSFM-----YNGE------VRIGQDQLQEFLKTAQTLQ 55 (76)
Q Consensus 2 r~lf~~----~e~~~~~i~l~~v~~~~~~~ll~f~-----Ytg~------l~i~~~~v~~ll~aA~~lq 55 (76)
|+||.+ .+...++|.++++.+..++.+.+|+ |++. ..|+++-+.++|-||++|.
T Consensus 43 raml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 43 RAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred HHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 678875 2566789999999999999999887 7776 3679999999999999986
No 17
>KOG0783|consensus
Probab=97.50 E-value=5.2e-05 Score=55.95 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=57.7
Q ss_pred ChhhccCC--CCCCCeEEeCCCCHHHHHHHhhhHh-cCcccc-----CHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679 1 MMKYIYAN--PCEHPIVILRDVKEHDMEALLSFMY-NGEVRI-----GQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN 72 (76)
Q Consensus 1 Fr~lf~~~--e~~~~~i~l~~v~~~~~~~ll~f~Y-tg~l~i-----~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~ 72 (76)
|.+||... |+..-.+...-+.++.|+.+|+|+| +.++.+ ..+-+-+++..|+.|-|.+|+..|+..+...+|
T Consensus 737 F~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~ 816 (1267)
T KOG0783|consen 737 FSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLN 816 (1267)
T ss_pred HHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 56777653 4444334444456999999999999 556654 556788899999999999999999999988887
Q ss_pred hcC
Q psy12679 73 ARK 75 (76)
Q Consensus 73 ~~~ 75 (76)
-++
T Consensus 817 lk~ 819 (1267)
T KOG0783|consen 817 LKT 819 (1267)
T ss_pred ccc
Confidence 654
No 18
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=97.12 E-value=0.00037 Score=37.45 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=29.8
Q ss_pred ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhh
Q psy12679 38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNA 73 (76)
Q Consensus 38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~ 73 (76)
.++.+.+.+++.||++|+|++|.+.|+.++...+.-
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~g 45 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKG 45 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcC
Confidence 347789999999999999999999999999887754
No 19
>KOG1665|consensus
Probab=96.50 E-value=0.0032 Score=40.61 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=48.8
Q ss_pred hhccCC----CCCCCeEEeCCCCHHHHHHHhhhHhcCcccc-CHHhHHHHHHHHhhcCccchhhcChh
Q psy12679 3 KYIYAN----PCEHPIVILRDVKEHDMEALLSFMYNGEVRI-GQDQLQEFLKTAQTLQVRGLTDVPPK 65 (76)
Q Consensus 3 ~lf~~~----e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i-~~~~v~~ll~aA~~lqi~~l~~~C~~ 65 (76)
+||..+ +..+.--.+-|-+|.-|+.||+|+-.|++.. +.-++..+|+.|++|||-++++.-++
T Consensus 38 ~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 38 AMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 577663 2223344555689999999999999999865 66789999999999999998876544
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.04 E-value=0.0085 Score=30.68 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=23.3
Q ss_pred hhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhc
Q psy12679 2 MKYIYANPCEHPIVILRDVKEHDMEALLSFMYN 34 (76)
Q Consensus 2 r~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Yt 34 (76)
+.|+.+.......|.+++|++..++.+++|++-
T Consensus 27 ~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 27 KNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp HHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence 455554222222799999999999999999974
No 21
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.015 Score=34.50 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=47.4
Q ss_pred CeEEeCCCCHHHHHHHhhhHhcCcc-------------------------ccCHHhHHHHHHHHhhcCccchhhcChhhH
Q psy12679 13 PIVILRDVKEHDMEALLSFMYNGEV-------------------------RIGQDQLQEFLKTAQTLQVRGLTDVPPKDH 67 (76)
Q Consensus 13 ~~i~l~~v~~~~~~~ll~f~Ytg~l-------------------------~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l 67 (76)
-.+..++|...+|..+++|+-..+- .++.+.+.++.-||++|.++.|.+.||...
T Consensus 39 ~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKiv 118 (158)
T COG5201 39 YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIV 118 (158)
T ss_pred CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 3467789999999999999964432 134556778999999999999999999887
Q ss_pred Hhhhh
Q psy12679 68 YKFLN 72 (76)
Q Consensus 68 ~~~~~ 72 (76)
...+.
T Consensus 119 aemir 123 (158)
T COG5201 119 AEMIR 123 (158)
T ss_pred HHHHc
Confidence 65543
No 22
>KOG2714|consensus
Probab=95.47 E-value=0.019 Score=39.91 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=39.3
Q ss_pred EEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHH-HHhhcCccchhh
Q psy12679 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLK-TAQTLQVRGLTD 61 (76)
Q Consensus 15 i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~-aA~~lqi~~l~~ 61 (76)
|.| |=+|+.|..||+|+=||++.++.-....++. =|.+|++.++++
T Consensus 56 iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 56 IFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred eEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHH
Confidence 444 4799999999999999999997766666666 999999999887
No 23
>KOG0511|consensus
Probab=95.05 E-value=0.025 Score=39.11 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=46.8
Q ss_pred ChhhccCC--CCC----CCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 1 MMKYIYAN--PCE----HPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 1 Fr~lf~~~--e~~----~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
|+.||.++ ++. .+...+++....+.+.++.|+|+.+..+.++-..+++-.|+++.+.
T Consensus 316 fk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 316 FKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA 378 (516)
T ss_pred HHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence 67888773 321 2345677888999999999999999999999999999999998765
No 24
>KOG3840|consensus
Probab=93.32 E-value=0.085 Score=35.65 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCeEEe-CCCCHHHHHHHhhhHhcCccccC-HHhHHHHHHHHhhcCccc
Q psy12679 12 HPIVIL-RDVKEHDMEALLSFMYNGEVRIG-QDQLQEFLKTAQTLQVRG 58 (76)
Q Consensus 12 ~~~i~l-~~v~~~~~~~ll~f~Ytg~l~i~-~~~v~~ll~aA~~lqi~~ 58 (76)
..+..+ .|++..+|+.||+|--||.+.-+ .-.|.++-+|+++|-|+.
T Consensus 138 rgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlipF 186 (438)
T KOG3840|consen 138 RDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVPF 186 (438)
T ss_pred CCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEeec
Confidence 345554 68999999999999999998754 357899999999998764
No 25
>KOG1987|consensus
Probab=92.40 E-value=0.06 Score=34.93 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=50.4
Q ss_pred CeEEeCCCCHHHHHHHhhhHhcCccccCHHhHH---HHHHHHhhcCccchhhcChhhHHhhhhh
Q psy12679 13 PIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQ---EFLKTAQTLQVRGLTDVPPKDHYKFLNA 73 (76)
Q Consensus 13 ~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~---~ll~aA~~lqi~~l~~~C~~~l~~~~~~ 73 (76)
..+.+.+.+++.++.+..|.|+..-.-..+.+. ..+.+|..++.+.+...|...+...++.
T Consensus 140 ~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~ 203 (297)
T KOG1987|consen 140 KLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIET 203 (297)
T ss_pred ccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHh
Confidence 344677899999999999999987666666665 8899999999999999999988776543
No 26
>KOG0783|consensus
Probab=90.17 E-value=0.45 Score=36.22 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=36.4
Q ss_pred CCCeEEeCCCCHHHHHHHhhhHhcCccc--------------cCHHhHHH-------HHHHHhhcCccchhhc
Q psy12679 11 EHPIVILRDVKEHDMEALLSFMYNGEVR--------------IGQDQLQE-------FLKTAQTLQVRGLTDV 62 (76)
Q Consensus 11 ~~~~i~l~~v~~~~~~~ll~f~Ytg~l~--------------i~~~~v~~-------ll~aA~~lqi~~l~~~ 62 (76)
....|.+.++.|..|+.||+|+||..+- +-++|... +...+.++++..+...
T Consensus 608 ~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~ 680 (1267)
T KOG0783|consen 608 SHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPF 680 (1267)
T ss_pred cCceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhh
Confidence 3457778999999999999999999542 22334444 6666677766665543
No 27
>KOG2715|consensus
Probab=87.14 E-value=0.46 Score=29.56 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=45.8
Q ss_pred EEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHh
Q psy12679 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYK 69 (76)
Q Consensus 15 i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~ 69 (76)
-.+-|-+|.-|.-+|+|+-.|++.++.-.-+.+|+-|.++.++++++.-.+.+.+
T Consensus 66 AYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 66 AYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred ceEeccCcchHHHHHHHHhcchhhhhhhhhhccchhhhccCChHHHHHHHHHHHH
Confidence 3455678999999999999999999996667799999999999888776655543
No 28
>KOG2838|consensus
Probab=85.18 E-value=0.45 Score=31.89 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=47.0
Q ss_pred CCeEEeCC-CCHHHHH-HHhhhHhcCccccC----------------------------HHhHHHHHHHHhhcCccchhh
Q psy12679 12 HPIVILRD-VKEHDME-ALLSFMYNGEVRIG----------------------------QDQLQEFLKTAQTLQVRGLTD 61 (76)
Q Consensus 12 ~~~i~l~~-v~~~~~~-~ll~f~Ytg~l~i~----------------------------~~~v~~ll~aA~~lqi~~l~~ 61 (76)
..+|.+.+ |-|..+. .++.|+||..+.++ .....++++.|.+|.+..+++
T Consensus 299 PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQ 378 (401)
T KOG2838|consen 299 PKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQ 378 (401)
T ss_pred CceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566544 5566665 47899999988542 134567889999999999999
Q ss_pred cChhhHHhhhhhcC
Q psy12679 62 VPPKDHYKFLNARK 75 (76)
Q Consensus 62 ~C~~~l~~~~~~~~ 75 (76)
+|+.-+.+...+++
T Consensus 379 a~e~Vir~acaadl 392 (401)
T KOG2838|consen 379 ACEDVIRKACAADL 392 (401)
T ss_pred HHHHHHHhhhhhhc
Confidence 99998888776653
No 29
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=84.10 E-value=3.4 Score=19.86 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQV 56 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi 56 (76)
-|++...+..+|+ |.-.++++..+.++++|..++-
T Consensus 9 agvS~~TVSr~ln----~~~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 9 AGVSKSTVSRVLN----GPPRVSEETRERILEAAEELGY 43 (46)
T ss_dssp HTSSHHHHHHHHT----TCSSSTHHHHHHHHHHHHHHTB
T ss_pred HCcCHHHHHHHHh----CCCCCCHHHHHHHHHHHHHHCC
Confidence 4678888777666 7789999999999999998875
No 30
>KOG2723|consensus
Probab=82.81 E-value=1.6 Score=28.03 Aligned_cols=49 Identities=6% Similarity=0.158 Sum_probs=39.3
Q ss_pred eEEeCCCCHHHHHHHhhhHhcCccccCH--HhHHHHHHHHhhcCccchhhcC
Q psy12679 14 IVILRDVKEHDMEALLSFMYNGEVRIGQ--DQLQEFLKTAQTLQVRGLTDVP 63 (76)
Q Consensus 14 ~i~l~~v~~~~~~~ll~f~Ytg~l~i~~--~~v~~ll~aA~~lqi~~l~~~C 63 (76)
...|. =+...|+.+++|+=|..+.+++ .++..+.+-|++++++.....+
T Consensus 52 ~~fID-RDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l 102 (221)
T KOG2723|consen 52 RYFID-RDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYL 102 (221)
T ss_pred cEEEc-CCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHH
Confidence 44443 4677999999999997777777 7889999999999999766543
No 31
>PHA03098 kelch-like protein; Provisional
Probab=78.60 E-value=1.9 Score=30.16 Aligned_cols=35 Identities=6% Similarity=-0.012 Sum_probs=31.4
Q ss_pred ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679 38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN 72 (76)
Q Consensus 38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~ 72 (76)
.++.+|..+++..|..+..+.|.+.|.+++.+...
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~ 138 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIE 138 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999877653
No 32
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=76.86 E-value=2.6 Score=19.42 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=14.7
Q ss_pred HhcCccc----cCHHhHHHHHHHHh
Q psy12679 32 MYNGEVR----IGQDQLQEFLKTAQ 52 (76)
Q Consensus 32 ~Ytg~l~----i~~~~v~~ll~aA~ 52 (76)
.|.|++. ++++.+++++..|.
T Consensus 11 fY~G~V~Vfd~v~~~Ka~~im~lA~ 35 (36)
T PF06200_consen 11 FYGGQVCVFDDVPPDKAQEIMLLAS 35 (36)
T ss_pred EECCEEEEeCCCCHHHHHHHHHHhc
Confidence 5777773 57777887777764
No 33
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=75.93 E-value=1.9 Score=23.23 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=22.3
Q ss_pred HHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679 46 EFLKTAQTLQVRGLTDVPPKDHYKFLN 72 (76)
Q Consensus 46 ~ll~aA~~lqi~~l~~~C~~~l~~~~~ 72 (76)
+++..|..++.+.+.+.|.+|+.++..
T Consensus 3 ~i~~~A~~~~~~~L~~~~~~~i~~nf~ 29 (103)
T PF07707_consen 3 SIYRLAEKYGLEELAEACLRFIAKNFN 29 (103)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 578899999999999999999987653
No 34
>KOG4682|consensus
Probab=70.23 E-value=2.7 Score=29.57 Aligned_cols=33 Identities=3% Similarity=-0.052 Sum_probs=29.7
Q ss_pred ccCHHhHHHHHHHHhhcCccchhhcChhhHHhh
Q psy12679 38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKF 70 (76)
Q Consensus 38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~ 70 (76)
.++++++...++||.+|++.++.+-|.+.+.-.
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 579999999999999999999999999887543
No 35
>KOG3713|consensus
Probab=69.14 E-value=3.6 Score=29.29 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=36.8
Q ss_pred CeEEeCCCCHHHHHHHhhhHhcCccccCHH-hHHHHHHHHhhcCccc-hhhcChh
Q psy12679 13 PIVILRDVKEHDMEALLSFMYNGEVRIGQD-QLQEFLKTAQTLQVRG-LTDVPPK 65 (76)
Q Consensus 13 ~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~-~v~~ll~aA~~lqi~~-l~~~C~~ 65 (76)
++...+ =+|..|..+++|-+||++....+ -.....+=-++.+|++ -++.||.
T Consensus 81 ~EyfFD-R~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~~~le~CC~ 134 (477)
T KOG3713|consen 81 NEYFFD-RHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDEAHLESCCW 134 (477)
T ss_pred Ceeeec-cChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCChhhhhHHhH
Confidence 344433 58999999999999999987654 3444666677888854 3456664
No 36
>KOG2838|consensus
Probab=68.84 E-value=13 Score=25.23 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=31.2
Q ss_pred eEEeCCCCHHHHHHHhhhHhcCccccCH---HhHHHHHHHHhhcCcc
Q psy12679 14 IVILRDVKEHDMEALLSFMYNGEVRIGQ---DQLQEFLKTAQTLQVR 57 (76)
Q Consensus 14 ~i~l~~v~~~~~~~ll~f~Ytg~l~i~~---~~v~~ll~aA~~lqi~ 57 (76)
.+..-++.-+.|+.+|.+.|||+..... .|+.-+-+.+.-++-.
T Consensus 173 dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 173 DIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred hhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 3455688999999999999999986544 3455555555555543
No 37
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=66.21 E-value=13 Score=17.45 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
-|++...+..+++ |.-.+++.....+++++..++..
T Consensus 7 ~gvs~~tvs~~l~----g~~~vs~~~~~~i~~~~~~l~~~ 42 (52)
T cd01392 7 AGVSVATVSRVLN----GKPRVSEETRERVLAAAEELGYR 42 (52)
T ss_pred HCcCHHHHHHHHc----CCCCCCHHHHHHHHHHHHHhCCC
Confidence 3678888777665 88889999999999999998864
No 38
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=63.88 E-value=7 Score=22.54 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=17.8
Q ss_pred ccCHHhHHHHHHHHhhcCccchh
Q psy12679 38 RIGQDQLQEFLKTAQTLQVRGLT 60 (76)
Q Consensus 38 ~i~~~~v~~ll~aA~~lqi~~l~ 60 (76)
.+..+...+++.||..|+++.+.
T Consensus 5 ~L~~edl~ql~kas~~l~l~dl~ 27 (112)
T PF09116_consen 5 ELKAEDLQQLMKASRTLGLPDLC 27 (112)
T ss_dssp EE-HHHHHHHHHHHHHCT--EEE
T ss_pred EecHHHHHHHHHHHHhcCCCeEE
Confidence 57889999999999999998864
No 39
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=62.88 E-value=4.9 Score=21.19 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=18.8
Q ss_pred HHHHHHhhcCccchhhcChhhHHhhh
Q psy12679 46 EFLKTAQTLQVRGLTDVPPKDHYKFL 71 (76)
Q Consensus 46 ~ll~aA~~lqi~~l~~~C~~~l~~~~ 71 (76)
+++..|+.++.+.+.+.|.+++.+..
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~nf 28 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKNF 28 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 35667788888888888888766543
No 40
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=62.61 E-value=20 Score=18.33 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=29.6
Q ss_pred CCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 19 DVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
|++...+..+++ |+-.++++....+.++|..++-.
T Consensus 11 gvS~~TVSr~ln----~~~~v~~~t~~~i~~~~~~~gy~ 45 (70)
T smart00354 11 GVSKATVSRVLN----GNGRVSEETREKVLAAMEELGYI 45 (70)
T ss_pred CCCHHHHHHHHC----CCCCCCHHHHHHHHHHHHHhCCC
Confidence 678888777664 88889999999999999999874
No 41
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=60.21 E-value=19 Score=23.19 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
-|||......+|+ |.-.|++++.+.++++|..|+-.
T Consensus 11 agvS~~TVSrvLn----~~~~vs~~tr~rV~~~a~~lgY~ 46 (329)
T TIGR01481 11 AGVSMATVSRVVN----GNPNVKPATRKKVLEVIKRLDYR 46 (329)
T ss_pred hCCCHHHHHHHhC----CCCCCCHHHHHHHHHHHHHHCCC
Confidence 5789999888886 77789999999999999999863
No 42
>KOG4350|consensus
Probab=58.08 E-value=1.5 Score=31.01 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=26.9
Q ss_pred cCHHhHHHHHHHHhhcCccchhhcChhhHHh
Q psy12679 39 IGQDQLQEFLKTAQTLQVRGLTDVPPKDHYK 69 (76)
Q Consensus 39 i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~ 69 (76)
+..+||-.++.||..++++++.+.|..|+-.
T Consensus 145 L~~~NvCmifdaA~ly~l~~Lt~~C~mfmDr 175 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTDLTDYCMMFMDR 175 (620)
T ss_pred HcccceeeeeeHHHHhcchHHHHHHHHHHhc
Confidence 3567888899999999999999999988754
No 43
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=56.22 E-value=30 Score=18.48 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=31.2
Q ss_pred CHHHHHHHhhhHhcCccccC----------HHhHHHHHHHHhhcCccch
Q psy12679 21 KEHDMEALLSFMYNGEVRIG----------QDQLQEFLKTAQTLQVRGL 59 (76)
Q Consensus 21 ~~~~~~~ll~f~Ytg~l~i~----------~~~v~~ll~aA~~lqi~~l 59 (76)
+...+-.+++.++.+.+... .+|+...+.+|..++++..
T Consensus 31 dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~ 79 (107)
T cd00014 31 DGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVV 79 (107)
T ss_pred chHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCcee
Confidence 46678888898888877442 3799999999999999876
No 44
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=55.64 E-value=26 Score=22.49 Aligned_cols=35 Identities=6% Similarity=0.098 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQV 56 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi 56 (76)
-|||....+.+|+ |.-.|++++.+.++++|..|+-
T Consensus 8 agVS~~TVSrvLn----~~~~vs~~tr~rV~~~a~~lgY 42 (327)
T PRK10423 8 AGVSTSTVSHVIN----KDRFVSEAITAKVEAAIKELNY 42 (327)
T ss_pred hCCcHHHHHHHhC----CCCCCCHHHHHHHHHHHHHHCC
Confidence 5789999988885 7778999999999999999985
No 45
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=55.60 E-value=25 Score=22.92 Aligned_cols=36 Identities=6% Similarity=0.104 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
-|||...+..+|+ |+-.|++++-+.++++|..|+-.
T Consensus 11 aGVS~~TVSrvLn----~~~~Vs~~tr~rV~~~a~elgY~ 46 (343)
T PRK10727 11 AGVSVATVSRVIN----NSPKASEASRLAVHSAMESLSYH 46 (343)
T ss_pred hCCCHHHHHHHhC----CCCCCCHHHHHHHHHHHHHHCCC
Confidence 4789999888885 77789999999999999999853
No 46
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=55.57 E-value=3.6 Score=22.28 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=8.7
Q ss_pred HHHHHhhhHhcC
Q psy12679 24 DMEALLSFMYNG 35 (76)
Q Consensus 24 ~~~~ll~f~Ytg 35 (76)
.+..-+|||||-
T Consensus 66 tL~AHlDYIYTQ 77 (81)
T PF06404_consen 66 TLAAHLDYIYTQ 77 (81)
T ss_pred HHHHHhhheecc
Confidence 344678999984
No 47
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=53.56 E-value=37 Score=18.76 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhhhHhcCccccCHHhHHHHHHH
Q psy12679 19 DVKEHDMEALLSFMYNGEVRIGQDQLQEFLKT 50 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~a 50 (76)
++++++|+.+++.+= ..+.++-+..+|..
T Consensus 40 ~~dp~VFriildLL~---~nVsP~AI~qmLK~ 68 (88)
T PF12926_consen 40 PMDPEVFRIILDLLR---LNVSPDAIFQMLKS 68 (88)
T ss_pred CcChHHHHHHHHHHH---cCCCHHHHHHHHHH
Confidence 468889999988875 56677777776654
No 48
>PRK09526 lacI lac repressor; Reviewed
Probab=51.95 E-value=32 Score=22.26 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQV 56 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi 56 (76)
-|||...++.+|+ |.-.|++++-+.++++|..|+-
T Consensus 15 aGVS~~TVSrvLn----~~~~vs~~tr~rV~~~a~elgY 49 (342)
T PRK09526 15 AGVSYQTVSRVLN----QASHVSAKTREKVEAAMAELNY 49 (342)
T ss_pred hCCCHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHCC
Confidence 5789999988886 7778999999999999999985
No 49
>KOG3368|consensus
Probab=51.90 E-value=11 Score=22.43 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=21.2
Q ss_pred CCCCCeEEeCCCCHHHHHHHhhhHhc
Q psy12679 9 PCEHPIVILRDVKEHDMEALLSFMYN 34 (76)
Q Consensus 9 e~~~~~i~l~~v~~~~~~~ll~f~Yt 34 (76)
+++-..|-+.|-....++.+|+++|+
T Consensus 77 ptglk~vl~Tdpk~~~ir~vLq~IYs 102 (140)
T KOG3368|consen 77 PTGLKFVLNTDPKAGSIRDVLQYIYS 102 (140)
T ss_pred CCCcEEEEecCCCcccHHHHHHHHHH
Confidence 33445666789999999999999998
No 50
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=50.58 E-value=36 Score=22.03 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
-|||...++..|+ |+-.|+++.-+.++++|..|+-.
T Consensus 16 agVS~~TVSr~Ln----~~~~vs~~tr~~V~~~a~elgY~ 51 (342)
T PRK10014 16 AGVSVSTVSLVLS----GKGRISTATGERVNQAIEELGFV 51 (342)
T ss_pred hCCCHHHHHHHHC----CCCCCCHHHHHHHHHHHHHhCCC
Confidence 5789999988886 77789999999999999999863
No 51
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=48.37 E-value=42 Score=21.57 Aligned_cols=35 Identities=9% Similarity=0.285 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHhhhHhcCcc---ccCHHhHHHHHHHHhhcCc
Q psy12679 18 RDVKEHDMEALLSFMYNGEV---RIGQDQLQEFLKTAQTLQV 56 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l---~i~~~~v~~ll~aA~~lqi 56 (76)
-|||....+.+|+ |+- .|++++.+.++++|..|+-
T Consensus 10 aGVS~~TVSrvLn----~~~~~~~Vs~~tr~rV~~~a~elgY 47 (328)
T PRK11303 10 AGVSRTTASYVIN----GKAKQYRVSDKTVEKVMAVVREHNY 47 (328)
T ss_pred hCCCHHHHHHHHc----CCCCCCCcCHHHHHHHHHHHHHhCC
Confidence 4789999888886 665 6999999999999999985
No 52
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=48.18 E-value=41 Score=21.65 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHhhhHhcCcc---ccCHHhHHHHHHHHhhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEV---RIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l---~i~~~~v~~ll~aA~~lqi~ 57 (76)
-|||......+|+ |.- .|++++.+.++++|..|+-.
T Consensus 9 aGVS~~TVSrvLn----~~~~~~~vs~~tr~rV~~~a~~lgY~ 47 (327)
T TIGR02417 9 AGVSKTTASYVIN----GKAKEYRISQETVERVMAVVREQGYQ 47 (327)
T ss_pred hCCCHHHHHHHHc----CCCCCCccCHHHHHHHHHHHHHhCCC
Confidence 5789999888885 665 59999999999999999863
No 53
>TIGR01913 bet_lambda phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes.
Probab=47.84 E-value=43 Score=20.93 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=32.7
Q ss_pred HHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcC
Q psy12679 24 DMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVP 63 (76)
Q Consensus 24 ~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C 63 (76)
....+=.++|.| ..+++.+...+..|..+++..+.+.|
T Consensus 18 ~~~~ik~~~~~g--~~t~~~~~~~l~~c~~~gLnP~lkei 55 (188)
T TIGR01913 18 IGTIIKTYLNPG--DASDDQFIMFLEVCQAKGLNPFTKEV 55 (188)
T ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHhCCCcccCcE
Confidence 445677899999 88999999999999999999887765
No 54
>PHA02790 Kelch-like protein; Provisional
Probab=46.76 E-value=13 Score=26.10 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=30.5
Q ss_pred ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhh
Q psy12679 38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFL 71 (76)
Q Consensus 38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~ 71 (76)
.++++|-.+++..|+.++.+.|.+.+.+|+.+..
T Consensus 119 ~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 119 DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 5788999999999999999999999998887664
No 55
>PRK09492 treR trehalose repressor; Provisional
Probab=45.07 E-value=44 Score=21.35 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
-|||...++.+|+ |.-.|++++-+.++++|..|+-.
T Consensus 14 agVS~~TVSrvLn----~~~~vs~~tr~rV~~~a~elgY~ 49 (315)
T PRK09492 14 SGVGKSTVSRVLN----NESGVSEETRERVEAVINQHGFS 49 (315)
T ss_pred hCCCHHHHhHHhC----CCCCCCHHHHHHHHHHHHHHCCC
Confidence 5789999888886 66789999999999999999853
No 56
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=43.58 E-value=53 Score=21.41 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQV 56 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi 56 (76)
-|||...++.+|+ |.-.|++++-+.++++|..|+-
T Consensus 11 aGVS~~TVSrvLn----~~~~Vs~~tr~kV~~~a~elgY 45 (346)
T PRK10401 11 AGVSVATVSRVLN----NSALVSADTREAVMKAVSELGY 45 (346)
T ss_pred hCCCHHHHHHHHC----CCCCCCHHHHHHHHHHHHHHCC
Confidence 4789999888886 6667999999999999999985
No 57
>KOG4390|consensus
Probab=42.64 E-value=56 Score=23.39 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=36.5
Q ss_pred CCCHHHHHHHhhhHhcCccccCHHh-HHHHHHHHhhcC-ccchhhcChhhHHhh
Q psy12679 19 DVKEHDMEALLSFMYNGEVRIGQDQ-LQEFLKTAQTLQ-VRGLTDVPPKDHYKF 70 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Ytg~l~i~~~~-v~~ll~aA~~lq-i~~l~~~C~~~l~~~ 70 (76)
|-+|+.|+.+|+|--||++.-+... +...=+--.+++ +++++.-||-.-++.
T Consensus 85 DRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeELaF~Gl~PeligDCCyEeYkD 138 (632)
T KOG4390|consen 85 DRDPDIFRHVLNFYRTGKLHYPRHECISAYDEELAFYGLVPELIGDCCYEEYKD 138 (632)
T ss_pred cCChHHHHHHHHHhhcCcccCchHHHHHHhhhhhhHhcccHHHHhhhhhHHHhh
Confidence 4689999999999999999876533 333333344566 588888887544443
No 58
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=42.39 E-value=21 Score=22.91 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=34.2
Q ss_pred hHh-cCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679 31 FMY-NGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN 72 (76)
Q Consensus 31 f~Y-tg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~ 72 (76)
+|| ||++.-. +|..+++.+---+..+..+.++..--.+.+.
T Consensus 19 ~I~~tG~VPTR-~NwHDfFNaLvWl~fPrtK~~lN~lh~~~Ia 60 (212)
T PF11227_consen 19 RIFETGQVPTR-DNWHDFFNALVWLAFPRTKAALNALHAAAIA 60 (212)
T ss_pred HHHHcCCCCCC-CchHHHhhHHHHHhCHHHHHHHHHHHHHHHH
Confidence 566 9999988 9999999999999999998887766555554
No 59
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=41.64 E-value=53 Score=21.24 Aligned_cols=36 Identities=8% Similarity=0.051 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
-|||...++.+|+ |.-.++++.-+.++++|..|+-.
T Consensus 15 agVS~~TVSrvLn----~~~~vs~~tr~rV~~~a~elgY~ 50 (331)
T PRK14987 15 VGVTKMTVSRFLR----NPEQVSVALRGKIAAALDELGYI 50 (331)
T ss_pred hCCCHHHhhhhhC----CCCCCCHHHHHHHHHHHHHhCCC
Confidence 4789999888885 77789999999999999999853
No 60
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=41.23 E-value=28 Score=16.40 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=16.8
Q ss_pred HHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccc
Q psy12679 22 EHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRG 58 (76)
Q Consensus 22 ~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~ 58 (76)
.+.++.-|+.+-.|++. +-.||..|+|+.
T Consensus 2 ee~l~~Ai~~v~~g~~S--------~r~AA~~ygVp~ 30 (45)
T PF05225_consen 2 EEDLQKAIEAVKNGKMS--------IRKAAKKYGVPR 30 (45)
T ss_dssp HHHHHHHHHHHHTTSS---------HHHHHHHHT--H
T ss_pred HHHHHHHHHHHHhCCCC--------HHHHHHHHCcCH
Confidence 45566666666666543 445888888875
No 61
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=40.80 E-value=63 Score=20.94 Aligned_cols=37 Identities=5% Similarity=0.108 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRG 58 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~ 58 (76)
-|||....+.+|+ |+-.|++++-+.++++|..|+-..
T Consensus 11 agVS~~TVSrvLn----~~~~vs~~tr~~V~~~a~elgY~p 47 (341)
T PRK10703 11 AGVSTTTVSHVIN----KTRFVAEETRNAVWAAIKELHYSP 47 (341)
T ss_pred hCCCHHHHHHHHc----CCCCCCHHHHHHHHHHHHHHCCCc
Confidence 4788889888885 777899999999999999998543
No 62
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=40.55 E-value=51 Score=19.58 Aligned_cols=28 Identities=25% Similarity=0.593 Sum_probs=20.5
Q ss_pred CHHHHHHHhhhHhcCccccCHHhHHHHHHHH
Q psy12679 21 KEHDMEALLSFMYNGEVRIGQDQLQEFLKTA 51 (76)
Q Consensus 21 ~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA 51 (76)
-+.+|+.++.|+| +.=..+.++++++-+
T Consensus 99 ~sTgfEAliGyLy---L~~~~eRL~ell~~~ 126 (132)
T COG1939 99 MSTGFEALIGYLY---LTKQEERLEELLNKV 126 (132)
T ss_pred HhhhHHHHHHHHH---HcccHHHHHHHHHHH
Confidence 3678999999999 444566777776654
No 63
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=40.51 E-value=69 Score=18.82 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=18.0
Q ss_pred CCCHHHHHHHhhhHhcCccc
Q psy12679 19 DVKEHDMEALLSFMYNGEVR 38 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Ytg~l~ 38 (76)
.++++.|..+++.++.|++.
T Consensus 38 ~i~~~~l~~li~lv~~g~It 57 (147)
T smart00845 38 PITPEHLAELLKLIEDGTIS 57 (147)
T ss_pred CCCHHHHHHHHHHHHcCCCc
Confidence 58899999999999999884
No 64
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=39.80 E-value=65 Score=21.46 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
-|||......+|+ |.-.|++++.+.++++|..|+-.
T Consensus 10 AGVS~sTVSrvln----~~~~Vs~eTr~kV~~a~~elgY~ 45 (333)
T COG1609 10 AGVSKATVSRVLN----GSPYVSEETREKVLAAIKELGYR 45 (333)
T ss_pred hCCCHHHHHHHHc----CCCCCCHHHHHHHHHHHHHHCCC
Confidence 5788888877777 77799999999999999999864
No 65
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=39.00 E-value=37 Score=19.52 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=14.9
Q ss_pred hHhcCccccCHHhHHHHHHHHh
Q psy12679 31 FMYNGEVRIGQDQLQEFLKTAQ 52 (76)
Q Consensus 31 f~Ytg~l~i~~~~v~~ll~aA~ 52 (76)
+.+.|+ .|+.+++..+++++.
T Consensus 10 L~~agk-ei~e~~l~~vl~aaG 30 (109)
T COG2058 10 LHLAGK-EITEDNLKSVLEAAG 30 (109)
T ss_pred HHHccC-cCCHHHHHHHHHHcC
Confidence 445566 778888888887764
No 66
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=38.97 E-value=35 Score=19.31 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=15.4
Q ss_pred hcCccccCHHhHHHHHHHHh
Q psy12679 33 YNGEVRIGQDQLQEFLKTAQ 52 (76)
Q Consensus 33 Ytg~l~i~~~~v~~ll~aA~ 52 (76)
|.|...++.+++..++.+|.
T Consensus 11 ~~~g~~iT~e~I~~IL~AAG 30 (105)
T TIGR03685 11 HSAGKEINEENLKAVLEAAG 30 (105)
T ss_pred HhcCCCCCHHHHHHHHHHhC
Confidence 34444888899999988887
No 67
>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.
Probab=38.88 E-value=33 Score=20.46 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=9.9
Q ss_pred CCCHHHHHHHhhhHhc
Q psy12679 19 DVKEHDMEALLSFMYN 34 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Yt 34 (76)
.|+.+.++.||+-.-.
T Consensus 18 ~v~~e~l~~il~aa~~ 33 (193)
T cd02144 18 PVPREVIENCIRTAGT 33 (193)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3666666666665544
No 68
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=37.81 E-value=37 Score=19.56 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=9.6
Q ss_pred CCCHHHHHHHhhhHhc
Q psy12679 19 DVKEHDMEALLSFMYN 34 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Yt 34 (76)
.|+.+.++.+++..-.
T Consensus 17 ~v~~e~l~~il~aA~~ 32 (160)
T cd02135 17 APDREQLEQILEAAAR 32 (160)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3566666666666554
No 69
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=37.71 E-value=36 Score=19.40 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=14.5
Q ss_pred cCccccCHHhHHHHHHHHh
Q psy12679 34 NGEVRIGQDQLQEFLKTAQ 52 (76)
Q Consensus 34 tg~l~i~~~~v~~ll~aA~ 52 (76)
.|...++.+++..++.+|.
T Consensus 12 ~~G~eITae~I~~IL~AAG 30 (106)
T cd05832 12 YAGKEINEENLKKVLEAAG 30 (106)
T ss_pred hcCCCCCHHHHHHHHHHhC
Confidence 3444888888888888887
No 70
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=37.69 E-value=36 Score=20.52 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=7.1
Q ss_pred CCHHHHHHHhhhHh
Q psy12679 20 VKEHDMEALLSFMY 33 (76)
Q Consensus 20 v~~~~~~~ll~f~Y 33 (76)
|+.+.++.||+=.-
T Consensus 20 I~~e~l~~ileaa~ 33 (185)
T cd02148 20 VSDEQLRAIYDLVK 33 (185)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555433
No 71
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=36.15 E-value=83 Score=20.20 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
-|||....+..|+ |.-.|++++-+.++++|..++-.
T Consensus 11 agVS~sTVSr~Ln----~~~~vs~~tr~rV~~~a~~lgY~ 46 (311)
T TIGR02405 11 AGVGKSTVSRVLN----NEPKVSIETRERVEQVIQQSGFV 46 (311)
T ss_pred hCCCHHHHHHHhC----CCCCCCHHHHHHHHHHHHHHCCC
Confidence 5789999888886 77789999999999999999853
No 72
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=36.10 E-value=89 Score=18.23 Aligned_cols=20 Identities=10% Similarity=0.473 Sum_probs=17.6
Q ss_pred CCCHHHHHHHhhhHhcCccc
Q psy12679 19 DVKEHDMEALLSFMYNGEVR 38 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Ytg~l~ 38 (76)
.++|+.|..+++.+..|++.
T Consensus 39 ~i~~~~l~~li~l~~~~~Is 58 (148)
T PF02637_consen 39 PISPEHLAELINLLEDGKIS 58 (148)
T ss_dssp SSTHHHHHHHHHHHHTTSSG
T ss_pred CCCHHHHHHHHHHHHcCCCC
Confidence 38999999999999999774
No 73
>PF15125 TMEM238: TMEM238 protein family
Probab=35.79 E-value=16 Score=19.01 Aligned_cols=13 Identities=23% Similarity=0.846 Sum_probs=9.3
Q ss_pred hHhcCccccCHHh
Q psy12679 31 FMYNGEVRIGQDQ 43 (76)
Q Consensus 31 f~Ytg~l~i~~~~ 43 (76)
+=|||+++++++.
T Consensus 52 ~WYtgNIe~~~ee 64 (65)
T PF15125_consen 52 FWYTGNIEVSPEE 64 (65)
T ss_pred HHHhcCCcCChhh
Confidence 4588888877653
No 74
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=34.90 E-value=41 Score=19.18 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=12.9
Q ss_pred CccccCHHhHHHHHHHHh
Q psy12679 35 GEVRIGQDQLQEFLKTAQ 52 (76)
Q Consensus 35 g~l~i~~~~v~~ll~aA~ 52 (76)
+...++.++|..++.++.
T Consensus 13 ~g~~it~e~I~~IL~AAG 30 (106)
T PRK06402 13 AGKEINEDNLKKVLEAAG 30 (106)
T ss_pred cCCCCCHHHHHHHHHHcC
Confidence 333778888888887776
No 75
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=34.62 E-value=42 Score=14.48 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=12.4
Q ss_pred EEeCCCCHHHHHHHhhh
Q psy12679 15 VILRDVKEHDMEALLSF 31 (76)
Q Consensus 15 i~l~~v~~~~~~~ll~f 31 (76)
..++||.+..-+.+++|
T Consensus 14 ~~lpGIG~~tA~~I~~~ 30 (30)
T PF00633_consen 14 MKLPGIGPKTANAILSF 30 (30)
T ss_dssp HTSTT-SHHHHHHHHHH
T ss_pred HhCCCcCHHHHHHHHhC
Confidence 45788988888888775
No 76
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=33.59 E-value=56 Score=19.23 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=19.5
Q ss_pred EEeCCC-CHHHHHHHhhhHhcCcccc
Q psy12679 15 VILRDV-KEHDMEALLSFMYNGEVRI 39 (76)
Q Consensus 15 i~l~~v-~~~~~~~ll~f~Ytg~l~i 39 (76)
|.+-.+ ++..+..+.+++|.|++-+
T Consensus 43 Ikvaei~~~~Dl~~~~~eiy~GNIvI 68 (124)
T COG2450 43 IKVAEISSYEDLEEAKREIYAGNIVI 68 (124)
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCEEE
Confidence 344444 7889999999999999854
No 77
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=33.15 E-value=45 Score=18.77 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.5
Q ss_pred HhcCccccCHHhHHHHHHHHh
Q psy12679 32 MYNGEVRIGQDQLQEFLKTAQ 52 (76)
Q Consensus 32 ~Ytg~l~i~~~~v~~ll~aA~ 52 (76)
+|.+...++.++|..++.++.
T Consensus 11 L~d~~~~~Tae~I~~ilkAaG 31 (103)
T cd05831 11 LHDDGIEITADNINALLKAAG 31 (103)
T ss_pred HccCCCCCCHHHHHHHHHHcC
Confidence 567788888899988888887
No 78
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=32.37 E-value=50 Score=22.29 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=21.8
Q ss_pred EEeCCCCHHHHHHHhhhHhcCccc
Q psy12679 15 VILRDVKEHDMEALLSFMYNGEVR 38 (76)
Q Consensus 15 i~l~~v~~~~~~~ll~f~Ytg~l~ 38 (76)
-.|+||.....+.|-+++=||++.
T Consensus 51 ~~lpgIG~~ia~kI~Eil~tG~~~ 74 (334)
T smart00483 51 KGLPGIGDKIKKKIEEIIETGKSS 74 (334)
T ss_pred hcCCCccHHHHHHHHHHHHhCcHH
Confidence 358999999999999999999986
No 79
>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain. Coenzyme F420 differs between the Archaea and the Actinobacteria, where the numbers of glutamate residues attached are 2 (Archaea) or 5-6 (Mycobacterium). The enzyme in the Archaea is homologous to the N-terminal domain of FbiB from Mycobacterium bovis, and is responsible for glutamate ligation. Therefore it seems likely that the C-terminal domain of FbiB, modeled by this alignment, is involved in additional glutamate ligation.
Probab=32.25 E-value=49 Score=19.92 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=8.5
Q ss_pred CCHHHHHHHhhhHhc
Q psy12679 20 VKEHDMEALLSFMYN 34 (76)
Q Consensus 20 v~~~~~~~ll~f~Yt 34 (76)
|+.+.++.||+-.-.
T Consensus 17 V~~e~l~~il~aA~~ 31 (194)
T TIGR03553 17 VDPDAVRAAVAAALT 31 (194)
T ss_pred CCHHHHHHHHHHHHh
Confidence 566666666664443
No 80
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=32.24 E-value=41 Score=23.77 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=35.9
Q ss_pred CCCHHHHHHHhhhHhcCcc---------------ccCHHhHHHHHHHHhhcCccchhhcCh
Q psy12679 19 DVKEHDMEALLSFMYNGEV---------------RIGQDQLQEFLKTAQTLQVRGLTDVPP 64 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Ytg~l---------------~i~~~~v~~ll~aA~~lqi~~l~~~C~ 64 (76)
+++.+-++.+++=.=-.++ .++-.|+.++.+.|+.++|+-+.++|.
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhh
Confidence 5777788887763332222 568899999999999999999999886
No 81
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=31.87 E-value=23 Score=16.57 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=13.2
Q ss_pred CccchhhcChhhHHhhhhh
Q psy12679 55 QVRGLTDVPPKDHYKFLNA 73 (76)
Q Consensus 55 qi~~l~~~C~~~l~~~~~~ 73 (76)
++.++...|...+-+.+..
T Consensus 2 ~v~sLqhLCR~~Ir~~~~~ 20 (41)
T cd03740 2 QVRSLQYLCRFVIRQYTRI 20 (41)
T ss_pred CcccHHHHHHHHHHHHcch
Confidence 5677888888777666543
No 82
>PHA02277 hypothetical protein
Probab=31.78 E-value=90 Score=18.56 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhhhHhcCccc---cCHHhHHHH
Q psy12679 18 RDVKEHDMEALLSFMYNGEVR---IGQDQLQEF 47 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~---i~~~~v~~l 47 (76)
.++|-..+...++|+-||++. |....-.++
T Consensus 10 K~iS~~Dm~~W~e~V~tg~v~gK~v~ek~~KqL 42 (150)
T PHA02277 10 KGISQADMEKWIEAVVQGTVDGKQVDEKTAKQL 42 (150)
T ss_pred hhccHHHHHHHHHHHHhCcccccccchhhHHHH
Confidence 478999999999999999995 444444433
No 83
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=31.54 E-value=28 Score=21.10 Aligned_cols=24 Identities=13% Similarity=0.461 Sum_probs=17.7
Q ss_pred eCCCCHHHHHHHhhhHhcCccccC
Q psy12679 17 LRDVKEHDMEALLSFMYNGEVRIG 40 (76)
Q Consensus 17 l~~v~~~~~~~ll~f~Ytg~l~i~ 40 (76)
+..++.+....|+.|+|-|--..+
T Consensus 95 v~~L~~~~~D~LMKYiYkg~~~~~ 118 (152)
T PF04699_consen 95 VKSLDSDQQDILMKYIYKGMESPS 118 (152)
T ss_dssp HCCS-HHHHHHHHHHHHHHTTS--
T ss_pred HHhCCHHHHhHHHHHHHHhccCcc
Confidence 467899999999999999855433
No 84
>cd02143 NADH_nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor. This family is involved in the reduction of flavin or nitroaromatic compounds by using NAD(P)H as electron donor in a obligatory two-electron transfer. Nitrogenase is homodimer. Each subunit contains one FMN molecule. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=31.10 E-value=54 Score=18.90 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=7.9
Q ss_pred ccCHHhHHHHHHHHh
Q psy12679 38 RIGQDQLQEFLKTAQ 52 (76)
Q Consensus 38 ~i~~~~v~~ll~aA~ 52 (76)
.++++.+.+++++|.
T Consensus 15 ~i~~~~l~~il~aa~ 29 (147)
T cd02143 15 PVPRETIERLLDIAR 29 (147)
T ss_pred CCCHHHHHHHHHHHh
Confidence 455555555555543
No 85
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=31.07 E-value=82 Score=16.55 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=14.1
Q ss_pred CccccCHHhHHHHHHHHhhcCccch
Q psy12679 35 GEVRIGQDQLQEFLKTAQTLQVRGL 59 (76)
Q Consensus 35 g~l~i~~~~v~~ll~aA~~lqi~~l 59 (76)
|-..+.+..++.+++.+...++..+
T Consensus 29 gL~nLrp~~lq~LL~~C~svKvkRL 53 (69)
T PF11459_consen 29 GLRNLRPRVLQELLEHCTSVKVKRL 53 (69)
T ss_pred HHhhcCHHHHHHHHHHCccHHHHHH
Confidence 4445666666666666655554433
No 86
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=30.08 E-value=31 Score=20.33 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHhhhHhc
Q psy12679 18 RDVKEHDMEALLSFMYN 34 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Yt 34 (76)
.+..+.+...+++|+|-
T Consensus 28 ~~yeprVv~qLLEfayR 44 (129)
T PF02291_consen 28 TEYEPRVVNQLLEFAYR 44 (129)
T ss_dssp --B-THHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 44578899999999984
No 87
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=29.83 E-value=14 Score=14.99 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=4.1
Q ss_pred Chhhcc
Q psy12679 1 MMKYIY 6 (76)
Q Consensus 1 Fr~lf~ 6 (76)
||.||.
T Consensus 15 Frkmfl 20 (21)
T PF05391_consen 15 FRKMFL 20 (21)
T ss_pred HHHHHc
Confidence 677774
No 88
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=29.02 E-value=84 Score=16.16 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=16.2
Q ss_pred eEEeCCCCHHHHHHHhhhHhc
Q psy12679 14 IVILRDVKEHDMEALLSFMYN 34 (76)
Q Consensus 14 ~i~l~~v~~~~~~~ll~f~Yt 34 (76)
.+.+.+++.+..+.+++|+-.
T Consensus 26 ivnl~~l~~~~~~Ri~Dfl~G 46 (73)
T PF04472_consen 26 IVNLENLDDEEAQRILDFLSG 46 (73)
T ss_dssp EEE-TTS-HHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHhc
Confidence 566789999999999999864
No 89
>cd02139 Nitroreductase_3 Nitroreductase-like family 3. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=28.80 E-value=62 Score=18.85 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=11.2
Q ss_pred CCCHHHHHHHhhhHhc
Q psy12679 19 DVKEHDMEALLSFMYN 34 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Yt 34 (76)
.++.+.++.+++....
T Consensus 18 ~v~~e~l~~ll~aa~~ 33 (164)
T cd02139 18 PVEEEKLERILEAARL 33 (164)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 4677777777776665
No 90
>cd02137 Nitroreductase_1 Nitroreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=28.69 E-value=66 Score=18.45 Aligned_cols=17 Identities=6% Similarity=0.284 Sum_probs=10.9
Q ss_pred CCCHHHHHHHhhhHhcC
Q psy12679 19 DVKEHDMEALLSFMYNG 35 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Ytg 35 (76)
.|+.+.++.+++..-..
T Consensus 18 ~v~~e~l~~il~~a~~a 34 (148)
T cd02137 18 KIPREELKEILELATLA 34 (148)
T ss_pred CCCHHHHHHHHHHHHHC
Confidence 46667777777766543
No 91
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=28.55 E-value=98 Score=20.78 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=33.9
Q ss_pred CCHHHHHHHhhhHhcCcccc----CHHhHHHHHHHHhhcCccc
Q psy12679 20 VKEHDMEALLSFMYNGEVRI----GQDQLQEFLKTAQTLQVRG 58 (76)
Q Consensus 20 v~~~~~~~ll~f~Ytg~l~i----~~~~v~~ll~aA~~lqi~~ 58 (76)
-+.++|..|++=.+...+.+ +..++...++.+..++|..
T Consensus 158 TD~dIf~DLleAa~kR~VpVYiLLD~~~~~~Fl~Mc~~~~v~~ 200 (284)
T PF07894_consen 158 TDVDIFCDLLEAANKRGVPVYILLDEQNLPHFLEMCEKLGVNL 200 (284)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEEechhcChHHHHHHHHCCCCh
Confidence 38999999999998888754 9999999999999999853
No 92
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=28.45 E-value=1e+02 Score=19.86 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHhhhHhcCcc--ccCHHhHHHHHHHHhhcCc
Q psy12679 18 RDVKEHDMEALLSFMYNGEV--RIGQDQLQEFLKTAQTLQV 56 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l--~i~~~~v~~ll~aA~~lqi 56 (76)
-|||....+.+|+ |.- .|++++-+.++++|..|+-
T Consensus 11 agVS~~TVSrvln----~~~~~~vs~~tr~rV~~~a~~lgY 47 (327)
T PRK10339 11 AGVSLATVSRVLN----DDPTLNVKEETKHRILEIAEKLEY 47 (327)
T ss_pred hCCCHHhhhhhhc----CCCCCCcCHHHHHHHHHHHHHhCC
Confidence 5789999888886 553 5999999999999999985
No 93
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=28.39 E-value=55 Score=18.77 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHhhhHhc
Q psy12679 18 RDVKEHDMEALLSFMYN 34 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Yt 34 (76)
..+++.+...+++|+|.
T Consensus 17 ~~~~~~v~~~Lle~~~r 33 (117)
T cd07979 17 TEYEPRVINQLLEFAYR 33 (117)
T ss_pred CccCHHHHHHHHHHHHH
Confidence 46889999999999985
No 94
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=28.33 E-value=32 Score=15.72 Aligned_cols=19 Identities=16% Similarity=-0.001 Sum_probs=13.0
Q ss_pred CccchhhcChhhHHhhhhh
Q psy12679 55 QVRGLTDVPPKDHYKFLNA 73 (76)
Q Consensus 55 qi~~l~~~C~~~l~~~~~~ 73 (76)
++.++...|...+-+.+..
T Consensus 2 ~~~sLq~LCR~~Ir~~~~~ 20 (39)
T cd03717 2 SVRSLQHLCRFVIRQCTRR 20 (39)
T ss_pred CCCCHHHHHHHHHHHHccc
Confidence 4567777888777776543
No 95
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.30 E-value=23 Score=16.87 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=12.9
Q ss_pred ccchhhcChhhHHhhhhh
Q psy12679 56 VRGLTDVPPKDHYKFLNA 73 (76)
Q Consensus 56 i~~l~~~C~~~l~~~~~~ 73 (76)
+.+|...|+..+.+..+.
T Consensus 3 ~~SLQ~LCR~~I~~~t~~ 20 (43)
T cd03742 3 VLSLQDLCCRAIVSCTPV 20 (43)
T ss_pred cccHHHHHHHHHHHhCCc
Confidence 567788888887776653
No 96
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=27.70 E-value=94 Score=19.06 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=17.5
Q ss_pred CCCeEEeCCCCHHHHHHHhhhHhc
Q psy12679 11 EHPIVILRDVKEHDMEALLSFMYN 34 (76)
Q Consensus 11 ~~~~i~l~~v~~~~~~~ll~f~Yt 34 (76)
....+.|. ++...++.|+.|+-.
T Consensus 90 ~~~~~~i~-ls~~~y~~L~~~I~~ 112 (173)
T PF09601_consen 90 GEDVRPIR-LSEAQYRRLVAFIRA 112 (173)
T ss_pred CCceEEEE-cCHHHHHHHHHHHHH
Confidence 34556665 899999999998864
No 97
>PF12542 CWC25: Pre-mRNA splicing factor; InterPro: IPR022209 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF10197 from PFAM. There is a single completely conserved residue Y that may be functionally important. Cwc25 has been identified to associate with pre-mRNA splicing factor Cef1/Ntc85, a component of the Prp19-associated complex (NTC) involved in spliceosome activation. Cwc25 is neither tightly associated with NTC nor required for spliceosome activation, but is required for the first catalytic reaction.
Probab=27.70 E-value=20 Score=19.61 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.5
Q ss_pred hhhHhcCcc
Q psy12679 29 LSFMYNGEV 37 (76)
Q Consensus 29 l~f~Ytg~l 37 (76)
|+|||.|..
T Consensus 7 LeWMY~~~~ 15 (96)
T PF12542_consen 7 LEWMYEGPP 15 (96)
T ss_pred ccccccCCc
Confidence 789999883
No 98
>cd02136 Nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=27.46 E-value=68 Score=18.90 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=9.2
Q ss_pred CCHHHHHHHhhhHhc
Q psy12679 20 VKEHDMEALLSFMYN 34 (76)
Q Consensus 20 v~~~~~~~ll~f~Yt 34 (76)
++.+.++.|++..-+
T Consensus 19 v~~e~l~~il~~a~~ 33 (178)
T cd02136 19 VPRETIEEILAAAQR 33 (178)
T ss_pred CCHHHHHHHHHHHHh
Confidence 566666666666554
No 99
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=27.26 E-value=67 Score=19.52 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=7.2
Q ss_pred ccCHHhHHHHHHHH
Q psy12679 38 RIGQDQLQEFLKTA 51 (76)
Q Consensus 38 ~i~~~~v~~ll~aA 51 (76)
.|+.+.+..++++|
T Consensus 26 ~I~~e~l~~ileaa 39 (195)
T PRK05365 26 PVSDEQLRELYDLV 39 (195)
T ss_pred CCCHHHHHHHHHHH
Confidence 44555555555554
No 100
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=27.02 E-value=50 Score=17.28 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=16.6
Q ss_pred CccccCHHhHHHHHHHH-hhcCcc
Q psy12679 35 GEVRIGQDQLQEFLKTA-QTLQVR 57 (76)
Q Consensus 35 g~l~i~~~~v~~ll~aA-~~lqi~ 57 (76)
|++-.-++++++++.+| .+|++.
T Consensus 19 GKvi~lP~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 19 GKVIWLPDSLEELLKIASEKFGFS 42 (69)
T ss_pred CEEEEcCccHHHHHHHHHHHhCCC
Confidence 77777778888877655 567764
No 101
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=26.65 E-value=81 Score=14.61 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=18.1
Q ss_pred HhHHHHHHHHhhcCccchhhcChhhHH
Q psy12679 42 DQLQEFLKTAQTLQVRGLTDVPPKDHY 68 (76)
Q Consensus 42 ~~v~~ll~aA~~lqi~~l~~~C~~~l~ 68 (76)
-++.++...|..++|+.....=.+-|.
T Consensus 5 ~~~~eL~~iAk~lgI~~~~~~~K~eLI 31 (43)
T PF07498_consen 5 MTLSELREIAKELGIEGYSKMRKQELI 31 (43)
T ss_dssp S-HHHHHHHHHCTT-TTGCCS-HHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcCCHHHHH
Confidence 467889999999999887665544444
No 102
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=26.57 E-value=83 Score=23.79 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=29.1
Q ss_pred HHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcC
Q psy12679 22 EHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQ 55 (76)
Q Consensus 22 ~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lq 55 (76)
...++.+++-++.|++.++.+-+.-++++.+.++
T Consensus 67 ~H~~E~~ld~~r~g~~~~~~~l~d~~l~~~D~l~ 100 (716)
T COG0643 67 AHAMEDLLDALRNGELELTSELLDLLLEALDALE 100 (716)
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhhhhHHHH
Confidence 5678899999999999999988888888866654
No 103
>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....
Probab=26.44 E-value=53 Score=18.13 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=18.5
Q ss_pred ccCHHhHHHHHHHHhhcCccchhh
Q psy12679 38 RIGQDQLQEFLKTAQTLQVRGLTD 61 (76)
Q Consensus 38 ~i~~~~v~~ll~aA~~lqi~~l~~ 61 (76)
.+..-++.++..|+..|+++..++
T Consensus 25 aV~~P~~~EI~~a~~~Lgl~~~~E 48 (95)
T PF01922_consen 25 AVENPTLEEIADACKKLGLPCVVE 48 (95)
T ss_dssp SBSS--HHHHHHHHHHTTSEEEEE
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEc
Confidence 455668999999999999988766
No 104
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=26.30 E-value=56 Score=20.33 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=23.4
Q ss_pred hHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679 31 FMYNGEVRIGQDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 31 f~Ytg~l~i~~~~v~~ll~aA~~lqi~ 57 (76)
|+|+-..++++++.+.+++-|..++..
T Consensus 136 WlLsRtP~~s~~~~~~ml~~ak~~Gfd 162 (174)
T COG3040 136 WLLSRTPTLSQETLKRMLEIAKRRGFD 162 (174)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 678888889999999999999988763
No 105
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=26.21 E-value=1.6e+02 Score=19.85 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchh
Q psy12679 18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLT 60 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~ 60 (76)
.+.+.+.+..++.-....+-..+.+++..+.++|..++++-..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~A~~~gl~vas 181 (325)
T cd01306 139 YGLSDEEVEEAILERKARAAAYAPANRSELAALARARGIPLAS 181 (325)
T ss_pred cCCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHCCCcEEE
Confidence 5678888888888888877788889999999999999986533
No 106
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=26.09 E-value=1e+02 Score=19.18 Aligned_cols=40 Identities=10% Similarity=0.246 Sum_probs=24.2
Q ss_pred eCCCCHHHHHHHhhhH-hcCccc----------cCHHhHHHHHHHHhhcCc
Q psy12679 17 LRDVKEHDMEALLSFM-YNGEVR----------IGQDQLQEFLKTAQTLQV 56 (76)
Q Consensus 17 l~~v~~~~~~~ll~f~-Ytg~l~----------i~~~~v~~ll~aA~~lqi 56 (76)
|+.++|++++.+++|. -.|+.. ++.=++..++..+...++
T Consensus 17 i~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~L 67 (196)
T PF12816_consen 17 IKSLPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGL 67 (196)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCC
Confidence 5678999999999875 444432 122234445555555554
No 107
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=25.99 E-value=31 Score=18.72 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=32.4
Q ss_pred CHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhc-CccchhhcChhhH
Q psy12679 21 KEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTL-QVRGLTDVPPKDH 67 (76)
Q Consensus 21 ~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~l-qi~~l~~~C~~~l 67 (76)
+.-++-.++.|-+.+.+....=+..+-+..++.+ .+.-+.+.|.+.+
T Consensus 22 DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l 69 (85)
T PF11971_consen 22 DGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHL 69 (85)
T ss_pred cHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHc
Confidence 6778899999999999877655555555555443 3566666666654
No 108
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=25.58 E-value=56 Score=17.88 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.6
Q ss_pred HHHHHhhhHhcCccccC-HHhHHHHHHHHhhcCcc
Q psy12679 24 DMEALLSFMYNGEVRIG-QDQLQEFLKTAQTLQVR 57 (76)
Q Consensus 24 ~~~~ll~f~Ytg~l~i~-~~~v~~ll~aA~~lqi~ 57 (76)
.+..+.+++-...+... .+....+.+|++.|+++
T Consensus 36 nls~l~~W~~~~~l~~~~~~~l~~l~Qa~~lL~~~ 70 (105)
T PF01843_consen 36 NLSELEDWARSHGLEEAAEEHLQPLSQAANLLQLR 70 (105)
T ss_dssp HHHHHHHCCCCTTSTTH-HHHCHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhc
Confidence 45577778777777655 88889999999999994
No 109
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.52 E-value=1.4e+02 Score=19.68 Aligned_cols=51 Identities=10% Similarity=0.269 Sum_probs=36.8
Q ss_pred CCCCeEEeCCCCHHHHHHHhhhHhcCcc--------ccCHHhHHHHHHH-HhhcCccchh
Q psy12679 10 CEHPIVILRDVKEHDMEALLSFMYNGEV--------RIGQDQLQEFLKT-AQTLQVRGLT 60 (76)
Q Consensus 10 ~~~~~i~l~~v~~~~~~~ll~f~Ytg~l--------~i~~~~v~~ll~a-A~~lqi~~l~ 60 (76)
..-+.|.+.+.+++.++..+..+=.+.. -|+++|+.++..+ ++.+.+..+.
T Consensus 201 ~GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~ 260 (273)
T PRK05848 201 AGADIVMCDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGSLI 260 (273)
T ss_pred cCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeChhh
Confidence 3457899999999999999997543211 3589999998877 5666555443
No 110
>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.
Probab=25.31 E-value=83 Score=17.01 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=9.5
Q ss_pred ccCHHhHHHHHHHHh
Q psy12679 38 RIGQDQLQEFLKTAQ 52 (76)
Q Consensus 38 ~i~~~~v~~ll~aA~ 52 (76)
.++++.+.+++++|.
T Consensus 14 ~i~~~~l~~l~~~~~ 28 (122)
T cd02062 14 PVPEEVLEKILEAAR 28 (122)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666666666654
No 111
>PRK10880 adenine DNA glycosylase; Provisional
Probab=24.72 E-value=1.1e+02 Score=21.05 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=30.7
Q ss_pred CeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHH
Q psy12679 13 PIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKT 50 (76)
Q Consensus 13 ~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~a 50 (76)
.-..|+||.+..-..++.|.|.-...+-+.||..++.-
T Consensus 110 ~L~~LpGIG~~TA~aIl~~af~~~~~iVD~nV~RV~~R 147 (350)
T PRK10880 110 EVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLAR 147 (350)
T ss_pred HHhcCCCccHHHHHHHHHHHCCCCeecccHHHHHHHHH
Confidence 45678999999999999999976666667788877543
No 112
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=24.64 E-value=50 Score=20.98 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=20.9
Q ss_pred hHhcCccccCHHhHHHHHHHHhhcCccc
Q psy12679 31 FMYNGEVRIGQDQLQEFLKTAQTLQVRG 58 (76)
Q Consensus 31 f~Ytg~l~i~~~~v~~ll~aA~~lqi~~ 58 (76)
++||-.-.++++.+.++-+||..-++.-
T Consensus 151 vVYtrs~~lP~s~~p~l~~aa~k~G~d~ 178 (198)
T PF07137_consen 151 VVYTRSPTLPESIVPELRRAAKKAGIDF 178 (198)
T ss_dssp EEEESSSS--GGGHHHHHHHHHHTT--G
T ss_pred EEEeCCCCCChHHhHHHHHHHHHhCCCH
Confidence 5678788899999999999999988753
No 113
>PF13013 F-box-like_2: F-box-like domain
Probab=24.39 E-value=1e+02 Score=17.59 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=33.5
Q ss_pred CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhh
Q psy12679 9 PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQT 53 (76)
Q Consensus 9 e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~ 53 (76)
+.+...+.+.|...+.++.|.+++...........+..+......
T Consensus 14 p~~~~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 14 PPNRQSLTLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH 58 (109)
T ss_pred CCCccccchhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 444456678999999999999999988876666666655555444
No 114
>PRK04021 hypothetical protein; Reviewed
Probab=24.23 E-value=1.1e+02 Score=16.81 Aligned_cols=22 Identities=5% Similarity=0.209 Sum_probs=17.7
Q ss_pred CCCCCeEEeCCCCHHHHHHHhh
Q psy12679 9 PCEHPIVILRDVKEHDMEALLS 30 (76)
Q Consensus 9 e~~~~~i~l~~v~~~~~~~ll~ 30 (76)
.+....+.+.+++++.+...|.
T Consensus 70 ~sr~K~v~i~g~~~e~l~~~L~ 91 (92)
T PRK04021 70 TSREKDLLVKGISLEEVKKKLK 91 (92)
T ss_pred CcCceEEEEecCCHHHHHHHhc
Confidence 4567789999999999887764
No 115
>PRK13910 DNA glycosylase MutY; Provisional
Probab=24.00 E-value=1.3e+02 Score=20.07 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=30.0
Q ss_pred CeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHH
Q psy12679 13 PIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLK 49 (76)
Q Consensus 13 ~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~ 49 (76)
.-..|+||.+..-..++.|.|.-...+-+.||..++.
T Consensus 73 ~L~~LpGIG~kTA~aIl~~af~~~~~~VD~nV~RVl~ 109 (289)
T PRK13910 73 SLLKLPGIGAYTANAILCFGFREKSACVDANIKRVLL 109 (289)
T ss_pred HHHhCCCCCHHHHHHHHHHHCCCCcCcccHHHHHHHH
Confidence 3566899999999999999998766667777777764
No 116
>PF13932 GIDA_assoc_3: GidA associated domain 3; PDB: 3CES_C 3CP2_A 3G05_A 3CP8_A 2ZXI_B 2ZXH_A.
Probab=23.61 E-value=66 Score=16.80 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=9.3
Q ss_pred EeCCCCHHHHHHHh
Q psy12679 16 ILRDVKEHDMEALL 29 (76)
Q Consensus 16 ~l~~v~~~~~~~ll 29 (76)
.|+||+|.++..|+
T Consensus 58 rI~GvtPa~i~~Ll 71 (72)
T PF13932_consen 58 RIPGVTPAAISLLL 71 (72)
T ss_dssp TSTTS-HHHHHHHH
T ss_pred hCCCCCHHHHHHHh
Confidence 36788888877664
No 117
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=23.28 E-value=52 Score=18.59 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=30.9
Q ss_pred eEEeC---CCCHHHHHHHhhhHhcCccccC---HHhHH-HHHHHHhhcCccchh
Q psy12679 14 IVILR---DVKEHDMEALLSFMYNGEVRIG---QDQLQ-EFLKTAQTLQVRGLT 60 (76)
Q Consensus 14 ~i~l~---~v~~~~~~~ll~f~Ytg~l~i~---~~~v~-~ll~aA~~lqi~~l~ 60 (76)
.|.+. .++..++..+++|+=..+..-. -..+. .+...|+.|++++.+
T Consensus 43 ~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p~~L~tLa~Ly~l~~~l 96 (99)
T COG3113 43 RIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVPEQLRTLAELYNLSDWL 96 (99)
T ss_pred EEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCcHHHHHHHHHhCcHhhh
Confidence 44444 4689999999999987655322 22222 367778888887654
No 118
>cd02151 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=22.88 E-value=94 Score=18.10 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHhhhHhcC
Q psy12679 18 RDVKEHDMEALLSFMYNG 35 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg 35 (76)
..|+.+.++.|++.....
T Consensus 17 ~~v~~e~l~~il~aa~~a 34 (162)
T cd02151 17 EPVEKEKVDALLKAALRA 34 (162)
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 347888888888887765
No 119
>PHA02545 45 sliding clamp; Provisional
Probab=22.81 E-value=84 Score=20.37 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.4
Q ss_pred ccCHHhHHHHHHHHhhcCccchh
Q psy12679 38 RIGQDQLQEFLKTAQTLQVRGLT 60 (76)
Q Consensus 38 ~i~~~~v~~ll~aA~~lqi~~l~ 60 (76)
.+..+...+++.+|..|+++.+.
T Consensus 117 ~L~aedl~ql~kas~~l~l~dl~ 139 (223)
T PHA02545 117 ELKAEDLQQLLKASRVLGLDDLA 139 (223)
T ss_pred EEcHHHHHHHHHHHHhcCCCeEE
Confidence 67889999999999999998764
No 120
>KOG3380|consensus
Probab=22.74 E-value=32 Score=20.90 Aligned_cols=20 Identities=15% Similarity=0.639 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHhhhHhcCcc
Q psy12679 18 RDVKEHDMEALLSFMYNGEV 37 (76)
Q Consensus 18 ~~v~~~~~~~ll~f~Ytg~l 37 (76)
+.++-+....|+.|+|.|--
T Consensus 96 ~~Ls~e~~DiLmKYiYkGm~ 115 (152)
T KOG3380|consen 96 KKLSTEEIDILMKYIYKGME 115 (152)
T ss_pred HHhhHHHHHHHHHHHHHHhc
Confidence 45667778899999999843
No 121
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=22.59 E-value=18 Score=20.16 Aligned_cols=24 Identities=17% Similarity=0.528 Sum_probs=18.8
Q ss_pred eCCCCHHHHHHHhhhHhcCccccC
Q psy12679 17 LRDVKEHDMEALLSFMYNGEVRIG 40 (76)
Q Consensus 17 l~~v~~~~~~~ll~f~Ytg~l~i~ 40 (76)
|..+.|.+|+.+++|+-..++.+.
T Consensus 65 L~~~~P~af~fvm~FA~dN~L~v~ 88 (92)
T PF12112_consen 65 LRDIEPMAFDFVMNFAKDNDLQVR 88 (92)
T ss_dssp HHHH-HHHHHHHHHHHHHHTEEEE
T ss_pred hhhcChHHHHHHHHHHHHCCCeee
Confidence 356889999999999988777654
No 122
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=22.55 E-value=87 Score=16.20 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=11.3
Q ss_pred HHHHHhhcCccchhhcChhhHHhhh
Q psy12679 47 FLKTAQTLQVRGLTDVPPKDHYKFL 71 (76)
Q Consensus 47 ll~aA~~lqi~~l~~~C~~~l~~~~ 71 (76)
+-..|+-++|+.+-+-|...|...+
T Consensus 9 vk~iAes~Gi~~l~de~a~~La~dv 33 (66)
T PF02969_consen 9 VKDIAESLGISNLSDEAAKALAEDV 33 (66)
T ss_dssp HHHHHHHTT---B-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3345566666666665555555443
No 123
>PRK10765 nitroreductase A; Provisional
Probab=22.50 E-value=91 Score=19.84 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=7.5
Q ss_pred CCHHHHHHHhhhHh
Q psy12679 20 VKEHDMEALLSFMY 33 (76)
Q Consensus 20 v~~~~~~~ll~f~Y 33 (76)
|+.+.++.||+-.-
T Consensus 22 v~~e~l~~ileaA~ 35 (240)
T PRK10765 22 ISEAQREAIINAAR 35 (240)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555443
No 124
>cd02149 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.
Probab=22.40 E-value=1e+02 Score=17.89 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=9.8
Q ss_pred CCCHHHHHHHhhhHhc
Q psy12679 19 DVKEHDMEALLSFMYN 34 (76)
Q Consensus 19 ~v~~~~~~~ll~f~Yt 34 (76)
.|+.+.++.+++-.-.
T Consensus 20 ~v~~e~l~~il~~a~~ 35 (157)
T cd02149 20 KISDEDLEEILEALRL 35 (157)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3666666666665543
No 125
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=22.37 E-value=1.8e+02 Score=19.61 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=37.6
Q ss_pred CCCCeEEeCCCCHHHHHHHhhhHhcCcc------ccCHHhHHHHHHH-HhhcCccchhh
Q psy12679 10 CEHPIVILRDVKEHDMEALLSFMYNGEV------RIGQDQLQEFLKT-AQTLQVRGLTD 61 (76)
Q Consensus 10 ~~~~~i~l~~v~~~~~~~ll~f~Ytg~l------~i~~~~v~~ll~a-A~~lqi~~l~~ 61 (76)
...+.|.+++++++.++..+..+- +++ -|+.+|+.++-.+ .+.+.+..+..
T Consensus 227 ~gaDiI~LDn~s~e~~~~av~~~~-~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 227 AGADIIMLDNFTTEQMREAVKRTN-GRALLEVSGNVTLETLREFAETGVDFISVGALTK 284 (296)
T ss_pred cCCCEEEeCCCChHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHhcCCCEEEeCcccc
Confidence 356789999999999999999764 444 3588899988776 46655554443
No 126
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=22.01 E-value=53 Score=18.06 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=15.3
Q ss_pred eCCCCHHHHHHHhhhHhcC
Q psy12679 17 LRDVKEHDMEALLSFMYNG 35 (76)
Q Consensus 17 l~~v~~~~~~~ll~f~Ytg 35 (76)
++-.+.+..+.+++|+.++
T Consensus 61 ~~iFs~~~~~~i~~y~~~t 79 (101)
T PF14769_consen 61 IGIFSVDQVKAIIDYFHNT 79 (101)
T ss_pred cCcCCHHHHHHHHHHHHHH
Confidence 5557899999999998764
No 127
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.75 E-value=1.8e+02 Score=19.38 Aligned_cols=51 Identities=16% Similarity=0.382 Sum_probs=37.3
Q ss_pred CCCCeEEeCCCCHHHHHHHhhhHhc----Ccc------ccCHHhHHHHHHH-HhhcCccchh
Q psy12679 10 CEHPIVILRDVKEHDMEALLSFMYN----GEV------RIGQDQLQEFLKT-AQTLQVRGLT 60 (76)
Q Consensus 10 ~~~~~i~l~~v~~~~~~~ll~f~Yt----g~l------~i~~~~v~~ll~a-A~~lqi~~l~ 60 (76)
...+.|.+++++++.++..+.++=. +++ -|+.+|+.++..+ ++.+.+..+.
T Consensus 201 agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt 262 (278)
T PRK08385 201 AGADIIMLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALT 262 (278)
T ss_pred cCcCEEEECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhh
Confidence 3457899999999999999998732 333 3588999998877 4665554443
No 128
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=21.68 E-value=90 Score=17.85 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.1
Q ss_pred CHHhHHHHHHHHhhcCccchhh
Q psy12679 40 GQDQLQEFLKTAQTLQVRGLTD 61 (76)
Q Consensus 40 ~~~~v~~ll~aA~~lqi~~l~~ 61 (76)
++.|+..++++|..++++++.-
T Consensus 11 ~p~NlG~i~Rta~afG~~~v~l 32 (142)
T PF00588_consen 11 DPGNLGAIIRTAAAFGVDGVIL 32 (142)
T ss_dssp SHHHHHHHHHHHHHTTESEEEE
T ss_pred CcCcHHHHHHHHHHhCCchhhe
Confidence 6789999999999999977653
No 129
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=21.46 E-value=1.8e+02 Score=16.82 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhh
Q psy12679 25 MEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFL 71 (76)
Q Consensus 25 ~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~ 71 (76)
...-..-+++|.+. .+..+.++.+...--++..+++.+.+=+-..+
T Consensus 85 ~~~Y~~~L~~G~vd-~e~~~~~~~~kLk~AGidkV~~E~QkQlda~~ 130 (134)
T PF12010_consen 85 WSEYYPPLETGLVD-PEEALPEFNEKLKAAGIDKVIAELQKQLDAFL 130 (134)
T ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 33445668899998 78888888888888888888877665554433
No 130
>KOG2830|consensus
Probab=20.85 E-value=34 Score=23.38 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=24.9
Q ss_pred hhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCccc---cCHHh
Q psy12679 3 KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVR---IGQDQ 43 (76)
Q Consensus 3 ~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~---i~~~~ 43 (76)
+||++|| .|.+|+...++-|+-=.|-|.+. ++.++
T Consensus 53 ~lFSsNE------~iedIsT~sLkyLlVpyflg~Lt~k~~~~~~ 90 (324)
T KOG2830|consen 53 ALFSSNE------TIEDISTNSLKYLLVPYFLGKLTEKQINEDR 90 (324)
T ss_pred Hhhcccc------hhhhccccccchhhhHHHHHHHHHHhhcCch
Confidence 4677765 45678888888888888888773 45555
No 131
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=20.67 E-value=56 Score=19.29 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=17.4
Q ss_pred hcCccccCHHhHHHHHHHHhhcCccch
Q psy12679 33 YNGEVRIGQDQLQEFLKTAQTLQVRGL 59 (76)
Q Consensus 33 Ytg~l~i~~~~v~~ll~aA~~lqi~~l 59 (76)
|-|.+.|++ +++++|..+....+
T Consensus 22 Y~GSitID~----~Ll~aagi~p~E~V 44 (126)
T PRK05449 22 YEGSITIDE----DLLDAAGILENEKV 44 (126)
T ss_pred cceeEEECH----HHHHhcCCCCCCEE
Confidence 778888886 67888888766543
No 132
>KOG2879|consensus
Probab=20.67 E-value=53 Score=22.10 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=20.5
Q ss_pred CHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcC
Q psy12679 21 KEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQ 55 (76)
Q Consensus 21 ~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lq 55 (76)
.+..+..++.|+|+|+-.-.-+-+.++=..+...+
T Consensus 145 ~~~~~~n~l~fL~~gr~~tlie~il~~~si~~~~~ 179 (298)
T KOG2879|consen 145 KALGMLNLLSFLYRGRMYTLIEAILGLGSILHFPY 179 (298)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhccchhhhccc
Confidence 45567888888998876544444444333333333
No 133
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=20.34 E-value=1e+02 Score=20.98 Aligned_cols=54 Identities=4% Similarity=0.001 Sum_probs=38.2
Q ss_pred CCeEEeCCCCHHHHHHHhhhH----hcCcccc---CHHhHHHHHHHHhhcCccchhhcChh
Q psy12679 12 HPIVILRDVKEHDMEALLSFM----YNGEVRI---GQDQLQEFLKTAQTLQVRGLTDVPPK 65 (76)
Q Consensus 12 ~~~i~l~~v~~~~~~~ll~f~----Ytg~l~i---~~~~v~~ll~aA~~lqi~~l~~~C~~ 65 (76)
...+.|+.-++++...-+.+. |.|+.-+ +.+.=.+.+.++..+++..++-+|-+
T Consensus 96 d~Pl~IDSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~eel~llk~yg~aavIvLa~d 156 (308)
T PRK00979 96 DLPFLIDSTSPEARIAAAKYATELGLADRAIYNSINPSIEEEEIEALKESDIKAAIVLAFD 156 (308)
T ss_pred CCCEEEeCCCHHHHHHHHHHhhhcCCCCceEEEeccCCCCHHHHHHHHHhCCceEEEEEcC
Confidence 346677888899999999987 7888744 32222255889999998777666644
No 134
>PRK10828 putative oxidoreductase; Provisional
Probab=20.32 E-value=1.1e+02 Score=18.38 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=8.4
Q ss_pred CCHHHHHHHhhhHhc
Q psy12679 20 VKEHDMEALLSFMYN 34 (76)
Q Consensus 20 v~~~~~~~ll~f~Yt 34 (76)
++.+.++.+|+-.-.
T Consensus 21 v~~e~i~~ileaA~~ 35 (183)
T PRK10828 21 PTGEQLQNILRAGMR 35 (183)
T ss_pred cCHHHHHHHHHHHHh
Confidence 456666666664443
No 135
>PRK10702 endonuclease III; Provisional
Probab=20.31 E-value=1.5e+02 Score=18.76 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=28.2
Q ss_pred CeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHH
Q psy12679 13 PIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKT 50 (76)
Q Consensus 13 ~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~a 50 (76)
.-..|+||.+..-..++-|.|.-...+-+.++..++.-
T Consensus 110 ~Ll~lpGVG~ktA~~ill~a~~~~~~~VDt~v~Rv~~r 147 (211)
T PRK10702 110 ALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNR 147 (211)
T ss_pred HHhcCCcccHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence 35678999999999999999976555555566665443
No 136
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=20.04 E-value=59 Score=19.20 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=17.3
Q ss_pred hcCccccCHHhHHHHHHHHhhcCccch
Q psy12679 33 YNGEVRIGQDQLQEFLKTAQTLQVRGL 59 (76)
Q Consensus 33 Ytg~l~i~~~~v~~ll~aA~~lqi~~l 59 (76)
|-|.+.|++ +|+++|..+....+
T Consensus 22 Y~GSItID~----~Lm~aagi~p~E~V 44 (126)
T TIGR00223 22 YEGSITIDE----DLLDAAGILENEKV 44 (126)
T ss_pred cceeEEECH----HHHHhcCCCCCCEE
Confidence 778888886 57888888766543
No 137
>PF00881 Nitroreductase: Nitroreductase family; InterPro: IPR000415 This entry represents a family of proteins consisting of nitroreductase enzymes and related oxidoreductases. Members of this family utilise FMN as a cofactor and are often found to be homodimers. Possible characteristics include Oxygen-insensitive NAD(P)H nitroreductase (FMN-dependent nitroreductase) (Dihydropteridine reductase) (1.6.99.7 from EC) and NADH dehydrogenase (1.6.99.3 from EC). A number of the proteins are described as oxidoreductases. They are primarily found in bacterial lineages though a number of eukaryotic homologs have been identified: Caenorhabditis elegans P34273 from SWISSPROT, Drosophila melanogaster (Fruit fly) Q8T3Q0 from SWISSPROT Q9VTE7 from SWISSPROT, Mus musculus (Mouse) Q9DCX8 from SWISSPROT and Homo sapiens (Human) O75989 from SWISSPROT. This protein is not found in photosynthetic eukaryotes. The sequences containing this entry in photosynthetic organisms are possible false positives. ; GO: 0016491 oxidoreductase activity; PDB: 1BKJ_A 2BKJ_B 3OF4_C 3E39_B 3GBH_B 2R01_A 1YWQ_A 2WZW_B 2WZV_B 2ISL_H ....
Probab=20.03 E-value=78 Score=17.89 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=10.5
Q ss_pred hcCccccCHHhHHHHHHHH
Q psy12679 33 YNGEVRIGQDQLQEFLKTA 51 (76)
Q Consensus 33 Ytg~l~i~~~~v~~ll~aA 51 (76)
|+++. |+.+.+..++++|
T Consensus 10 f~~~~-v~~~~l~~il~~a 27 (165)
T PF00881_consen 10 FDPEP-VPDEDLEEILEAA 27 (165)
T ss_dssp BESTS-SEHHHHHHHHHHH
T ss_pred cCCCC-CCHHHHHHHHHHH
Confidence 44444 6666666666666
No 138
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=20.02 E-value=59 Score=18.76 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=17.1
Q ss_pred hcCccccCHHhHHHHHHHHhhcCccch
Q psy12679 33 YNGEVRIGQDQLQEFLKTAQTLQVRGL 59 (76)
Q Consensus 33 Ytg~l~i~~~~v~~ll~aA~~lqi~~l 59 (76)
|-|.+.|++ +++++|..+....+
T Consensus 21 YeGSitID~----~Ll~aagi~~~E~V 43 (111)
T cd06919 21 YEGSITIDE----DLLEAAGILPYEKV 43 (111)
T ss_pred cceeEEECH----HHHHhcCCCCCCEE
Confidence 778888886 57888887765543
Done!