RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12679
(76 letters)
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 45.3 bits (108), Expect = 6e-08
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 10 CEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
E I + +V E L+ F Y ++ + ++ + E K + L V + +
Sbjct: 65 GELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 45.3 bits (108), Expect = 6e-08
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
V+L LL F Y G + + + L A+ L+V ++
Sbjct: 63 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVEL 110
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 45.0 bits (107), Expect = 8e-08
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 10 CEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
E + + +V E L+ F Y ++ + +D + E + + L V + +
Sbjct: 72 AELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 44.5 bits (106), Expect = 9e-08
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 14 IVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
I + ++ LL FMY + + + + + TA LQ+ + D
Sbjct: 70 INLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 44.5 bits (106), Expect = 1e-07
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 10 CEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
+ + + V + AL+ F Y + + + + L A+ L++ ++ V
Sbjct: 62 DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHV 114
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 44.2 bits (105), Expect = 1e-07
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
+ + LL+F+Y V + +L+ + A+ L V+ L +
Sbjct: 63 ALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEA 110
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 44.1 bits (105), Expect = 1e-07
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 11 EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
+ + VK + LL F+Y G + + ++E + A L+V +
Sbjct: 58 NNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 44.2 bits (105), Expect = 1e-07
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 14 IVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
+V L + +L FMY ++ + + + + L A LQ++ +
Sbjct: 63 VVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 111
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 43.8 bits (104), Expect = 2e-07
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 14 IVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
+ + +V LL F Y ++ + ++ ++E ++ A+ L++ L D
Sbjct: 72 VSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 43.8 bits (104), Expect = 2e-07
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
V+L LL F Y G + + + L A+ L+V ++
Sbjct: 62 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVEL 109
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 43.8 bits (104), Expect = 3e-07
Identities = 10/48 (20%), Positives = 27/48 (56%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
+ L + M +L ++++G++R+ +D +Q+ ++ A L + L +
Sbjct: 91 IELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 138
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 42.6 bits (101), Expect = 4e-07
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
L + + +L + Y ++ + L + L A+ L++ L +
Sbjct: 65 YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 42.6 bits (101), Expect = 5e-07
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 14 IVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
+ + V+ + +LSF Y G + + + TA LQ++ + +
Sbjct: 71 VELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEK 119
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 43.7 bits (104), Expect = 5e-07
Identities = 10/48 (20%), Positives = 27/48 (56%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
+ L + M +L ++++G++R+ +D +Q+ ++ A L + L +
Sbjct: 75 IELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 122
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 41.5 bits (98), Expect = 1e-06
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 14 IVILRDVKEHDMEALLSFMYNGE-VRIGQDQLQEFLKTAQTLQVRGLTDV 62
+V L ++ +L+++Y+ + VR+ D L E +K+ Q L V+ + +
Sbjct: 67 VVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL 116
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 39.9 bits (94), Expect = 5e-06
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
+ + DV+ LL +MY+ E+ + D + L A+ V L
Sbjct: 53 IHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKA 100
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 38.4 bits (90), Expect = 5e-05
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 15 VILRDVKEHD------MEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
V +R +EA++ +MY G +R+ + E L+ A + L +
Sbjct: 77 VEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEF 130
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 38.3 bits (89), Expect = 5e-05
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
V + DV+ + ++ F+Y G+ + L A + L +
Sbjct: 216 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVM 263
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 36.0 bits (84), Expect = 2e-04
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGL 59
V + DV+ + ++ F+Y G+ + L A + L
Sbjct: 67 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 111
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 36.1 bits (84), Expect = 2e-04
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGL 59
V + DV+ + ++ F+Y G+ + L A + L
Sbjct: 76 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 120
>2vi7_A Acetyltransferase PA1377; GNAT, GCN5 family, N-acetyltransferase,
hypothetical protein; 2.25A {Pseudomonas aeruginosa}
Length = 177
Score = 24.6 bits (54), Expect = 3.3
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 11 EHPIVILRDVKEHDMEALLSFMYNGEVR 38
E P + L E +E L + + V
Sbjct: 4 ESPTIRLERYSERHVEGLTALYNDPAVA 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 3.6
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 22/62 (35%)
Query: 13 PIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN 72
P IL D E++ E + S M L + LT +D+ N
Sbjct: 320 PPSILEDSLENN-EGVPSPM---------------------LSISNLTQEQVQDYVNKTN 357
Query: 73 AR 74
+
Sbjct: 358 SH 359
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.0 bits (51), Expect = 7.4
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 3 KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRI----GQDQLQEFLKTAQTLQVR- 57
+ + + P E+ +++L +V+ + +A +F N +I Q+ +FL A T +
Sbjct: 236 RLLKSKPYENCLLVLLNVQ--NAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 58 -----GLTD 61
LT
Sbjct: 292 DHHSMTLTP 300
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer,
signal transduction, transferase; 0.98A {Thermotoga
maritima} SCOP: a.24.10.3
Length = 105
Score = 23.4 bits (51), Expect = 7.6
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 23 HDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQ 55
H +E +L N E++I D L + +
Sbjct: 65 HTLENILDKARNSEIKITSDLLDKIFAGVDMIT 97
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A
{Salmonella typhimurium} SCOP: a.24.10.3
Length = 146
Score = 23.2 bits (50), Expect = 9.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 23 HDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQ 55
H ME LL GE+++ D + FL+T +Q
Sbjct: 67 HLMENLLDEARRGEMQLNTDIINLFLETKDIMQ 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.411
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,166,104
Number of extensions: 54819
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 30
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)