RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12679
         (76 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 38.6 bits (89), Expect = 6e-06
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 10  CEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
               I +  ++       LL FMY   + + +  +   + TA  LQ+  + D 
Sbjct: 62  NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 114


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 38.9 bits (90), Expect = 6e-06
 Identities = 8/55 (14%), Positives = 20/55 (36%)

Query: 8   NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
                    L  +     + +L + Y   ++   + L + L  A+ L++  L + 
Sbjct: 58  FHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112


>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
          subunit HisZ {Thermotoga maritima [TaxId: 2336]}
          Length = 275

 Score = 24.0 bits (51), Expect = 2.5
 Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 1/36 (2%)

Query: 16 ILRDVKEHDMEALLSFMYNGEV-RIGQDQLQEFLKT 50
          +L   K +  ++ +   Y   V R     L    + 
Sbjct: 58 VLNHRKRYSPDSQIKVWYADFVYRYSGSDLVAEYQL 93


>d1z3xa1 a.118.1.22 (A:1-87) GUN4-like protein Ycf53, N-terminal
          domain {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 87

 Score = 22.9 bits (49), Expect = 4.1
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 40 GQDQLQEFLKTAQTLQVRGLTDV 62
          G   LQEFLK + T        +
Sbjct: 37 GYHLLQEFLKDSATFSPPPAPWI 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 285,389
Number of extensions: 10485
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 5
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)