BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12680
(2567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 1 MGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDE 60
MGG P GPAGTGKTET K L + + +VF C + D + + F GL GAW CFDE
Sbjct: 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDE 664
Query: 61 FNRIDVEVLSVVAQQILTIQRGVTLGEEEI-LFEGTILKLDRTCSVFITMNPGYAGRSEL 119
FNR++ +LS V+QQI TIQ + +E+ L G + L + +F+TMNPGYAGRS L
Sbjct: 665 FNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNL 724
Query: 120 PDNLKSLFRTVAMMVPDYALISEIIV 145
PDNLK LFR++AM+ PD +I+++++
Sbjct: 725 PDNLKKLFRSMAMIKPDREMIAQVML 750
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 317 DLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFA 376
D+FPG +L L K ++E+ ++ +L ++EKI Q+++++ + G M+VG S
Sbjct: 858 DVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGG 917
Query: 377 GKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAV 436
GKT ++ + EA++ ++ K E V++PK+IT QL+G D + EW+DG+
Sbjct: 918 GKTTSWEVYLEAIEQVDNI------KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTA 971
Query: 437 SYRQF---AMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLI 493
+ R+ ++ R W+IFDG VD W+EN+NS+LDDNK L L +GE +AL ++
Sbjct: 972 TLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVM 1031
Query: 494 FEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNTL 533
FE QDL+ A+ AT+SRCGM++ L + + ++L+TL
Sbjct: 1032 FEVQDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDTL 1071
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 113/185 (61%), Gaps = 9/185 (4%)
Query: 1772 LNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQL 1831
L K ++E+ ++ +L ++EKI Q+++++ + G M+VG S GKT ++ + EA++
Sbjct: 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQ 932
Query: 1832 IEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQF---AMSQNEN 1888
++ K E V++PK+IT QL+G D + EW+DG+ + R+ ++
Sbjct: 933 VDNI------KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTK 986
Query: 1889 RKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATIT 1948
R W+IFDG VD W+EN+NS+LDDNK L L +GE +AL ++FE QDL+ A+ ATI+
Sbjct: 987 RHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATIS 1046
Query: 1949 DESMV 1953
MV
Sbjct: 1047 RCGMV 1051
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 162/340 (47%), Gaps = 56/340 (16%)
Query: 1289 GRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKS 1348
W W + + S + +++ T +T R++ ++ ++ +P++ GP G+GK+
Sbjct: 1259 ANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKT 1318
Query: 1349 CYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKR 1408
+T S LR+ F F + + +NFS+ T T ++++ D
Sbjct: 1319 MTLT---------STLRA-FPDF----------EVVSLNFSSAT----TPELLLKTFDHH 1354
Query: 1409 RKGVYGPP---------LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKD 1459
+ P LGK VVF D++N+P +++G Q I +RQ ++ ++ D
Sbjct: 1355 CEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSD 1414
Query: 1460 VVAVKLIEIQLMCAMGPPSTGNTV--TPRFSRHFNQIVINKFDDDTMVTI---FSKILLW 1514
+KL +IQ + A PP+ V T RF RH ++++ ++ I F++ L+
Sbjct: 1415 HTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMK 1474
Query: 1515 HL-DTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLS 1573
L + R F+ + L A + + ES P ++HY+++ R+ +R + +L
Sbjct: 1475 LLPNLRSFA-------DNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDRALL-- 1524
Query: 1574 VPEAIE-----SLLSMKRLWVHEVLRVYYDRLVDSDDRLW 1608
EAI+ +L + RLW HE LR++ DRLV+++++ W
Sbjct: 1525 --EAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEW 1562
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%)
Query: 2400 KKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVS 2459
K R+ L+ L E+ RW ++ N + + GDV++A+ +AY+G F FR +
Sbjct: 2071 KVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMR 2130
Query: 2460 TWVKEVAACNIVCTKDFQLGAVMGNPVEIRAWNIFGLPCDSFSIDNGIIIKNSRRWPLMI 2519
W+ + + I D + + + P E W+ LP D I+N I++K R+PL+I
Sbjct: 2131 KWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYPLVI 2190
Query: 2520 DPQEQANKWIKNMEKANGLNVIRLSNTDYMRILEGAIGFGFP 2561
DP QA +++ N + ++ +M+ LE A+ FG P
Sbjct: 2191 DPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCP 2232
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 929 LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGP 988
LGK VVF D++N+P +++G Q I +RQ ++ ++ D +KL +IQ + A P
Sbjct: 1372 LGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNP 1431
Query: 989 PSTGNTV--TPRFSRH 1002
P+ V T RF RH
Sbjct: 1432 PTDAGRVQLTHRFLRH 1447
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 1106 YRMLSEALQLIEEWSNQGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGK 1165
Y L++AL+ S GG P GPAGTGKTET K L + + +VF C + D + +
Sbjct: 594 YLTLTQALE-----SRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSR 648
Query: 1166 FF 1167
F
Sbjct: 649 IF 650
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%)
Query: 1041 DLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFA 1100
D+FPG +L L K ++E+ ++ +L ++EKI Q+++++ + G M+VG S
Sbjct: 858 DVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGG 917
Query: 1101 GKTCAYRMLSEALQLIE 1117
GKT ++ + EA++ ++
Sbjct: 918 GKTTSWEVYLEAIEQVD 934
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 26/142 (18%)
Query: 661 FFFSCIWSMGACLTFETKPHFSNLLYGLMEKEFPASLRESLGLPVELCQPPAKPYLFTVP 720
+S +W +G + + +FS + + PA+ T+P
Sbjct: 1210 LLYSLMWGLGGSMGLVERENFSKFIQTIAITPVPAN---------------------TIP 1248
Query: 721 PQGTVYDYRFIKEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTH 780
+ DY + W W + + S + +++ T +T R++ ++ ++
Sbjct: 1249 ----LLDYS-VSIDDANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSE 1303
Query: 781 QKPVMFIGPTGTGKSCYITVSI 802
+P++ GP G+GK+ +T ++
Sbjct: 1304 HRPLILCGPPGSGKTMTLTSTL 1325
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 82/224 (36%), Gaps = 60/224 (26%)
Query: 1945 ATITDESMVEDLSNLLNSGEVPNIFASDEKA-------EICEKMGVIDRQKDK-----SM 1992
+ + + S +E ++ LL GEVP +F +E E ++ G+I +++ +
Sbjct: 1713 SNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEEELYKYFTS 1772
Query: 1993 QTDGTMMALFKFFVDTP-----------------------WPPDALLAVATRFLNEVEL- 2028
Q + +F +P W P+AL V + F ++L
Sbjct: 1773 QVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGEWSPEALFQVGSEFTRNLDLE 1832
Query: 2029 -----------SEAE-------------RQISIDMCQNFHVSTQNLSDEFLVKTSRHVYV 2064
EAE R + H + + L + R YV
Sbjct: 1833 NPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYV 1892
Query: 2065 TPTSYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQI 2108
TP YL+ I+ L+ K++++ + +GL+KL +Q+
Sbjct: 1893 TPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV 1936
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 1 MGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDE 60
MGG P GPAGTGKTET K L + + +VF C + D + + F GL GAW CFDE
Sbjct: 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDE 664
Query: 61 FNRIDVEVLSVVAQQILTIQRGVTLGEEEI-LFEGTILKLDRTCSVFITMNPGYAGRSEL 119
FNR++ +LS V+QQI TIQ + +E+ L G + L + +F+TMNPGYAGRS L
Sbjct: 665 FNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNL 724
Query: 120 PDNLKSLFRTVAMMVPDYALISEIIV 145
PDNLK LFR++AM+ PD +I+++++
Sbjct: 725 PDNLKKLFRSMAMIKPDREMIAQVML 750
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 317 DLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFA 376
D+FPG +L L K ++E+ ++ +L ++EKI Q+++++ + G M+VG S
Sbjct: 858 DVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGG 917
Query: 377 GKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAV 436
GKT ++ + EA++ ++ K E V++PK+IT QL+G D + EW+DG+
Sbjct: 918 GKTTSWEVYLEAIEQVDNI------KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTA 971
Query: 437 SYRQF---AMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLI 493
+ R+ ++ R W+IFDG VD W+EN+NS+LDDNK L L +GE +AL ++
Sbjct: 972 TLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVM 1031
Query: 494 FEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNTL 533
FE QDL+ A+ AT+SRCGM++ L + + ++L+TL
Sbjct: 1032 FEVQDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDTL 1071
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 146/682 (21%), Positives = 273/682 (40%), Gaps = 105/682 (15%)
Query: 1945 ATITDESMVEDLSNLLNSGEVPNIFASDEKA-------EICEKMGVIDRQKDK-----SM 1992
+ + + S +E ++ LL GEVP +F +E E ++ G+I +++ +
Sbjct: 1713 SNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEEELYKYFTS 1772
Query: 1993 QTDGTMMALFKFFVDTP-----------------------WPPDALLAVATRFLNEVEL- 2028
Q + +F +P W P+AL V + F ++L
Sbjct: 1773 QVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGEWSPEALFQVGSEFTRNLDLE 1832
Query: 2029 -----------SEAE-------------RQISIDMCQNFHVSTQNLSDEFLVKTSRHVYV 2064
EAE R + H + + L + R YV
Sbjct: 1833 NPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYV 1892
Query: 2065 TPTSYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMV 2124
TP YL+ I+ L+ K++++ + +GL+KL +Q+
Sbjct: 1893 TPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV---------------- 1936
Query: 2125 SAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQ 2184
K+L V++ +++ E + E + + + AA+ + A ++ +V N++
Sbjct: 1937 -----KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKE 1991
Query: 2185 ALAAQAMKSECXXXXXXXXXXXXXXXXXXNTLTSNDITVVKTMKSPPDIVKLVMKAVCIL 2244
+A Q +K+ +T+ + +K++ PP VKL M+AVC++
Sbjct: 1992 -IAVQKVKAYADLEKAEPAIIEAQEAV--STIKKKHLDEIKSLPKPPTPVKLAMEAVCLM 2048
Query: 2245 KGVKSERVPDAGGQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKR-LEDEFLSR 2303
GG+ +E W +K + + F+ + N++ + I+ + +L
Sbjct: 2049 ----------LGGKKLE--WADIRKKIMEPNFITSIINYDTKKMMTPKIREAITKGYLED 2096
Query: 2304 EDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQ 2363
FD E V ++S A L KW A Y ++ + P LR+ E+L+ A + L KQ
Sbjct: 2097 PGFDYETVNRASKACGPLVKWATAQTYYSEILDRIKP----LREEVEQLENAANELKLKQ 2152
Query: 2364 EQNRIVQEKLQK----LQNTXXXXXXXXXXXXXXXXXCVKKKQRAEDLIGKLGGEKERWS 2419
++ L+K + K R+ L+ L E+ RW
Sbjct: 2153 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2212
Query: 2420 STAKMLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTWVKEVAACNIVCTKDFQLG 2479
++ N + + GDV++A+ +AY+G F FR + W+ + + I D +
Sbjct: 2213 QQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVP 2272
Query: 2480 AVMGNPVEIRAWNIFGLPCDSFSIDNGIIIKNSRRWPLMIDPQEQANKWIKNMEKANGLN 2539
+ + P E W+ LP D I+N I++K R+PL+IDP QA +++ N +
Sbjct: 2273 SFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKIT 2332
Query: 2540 VIRLSNTDYMRILEGAIGFGFP 2561
++ +M+ LE A+ FG P
Sbjct: 2333 KTSFLDSSFMKNLESALRFGCP 2354
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 113/185 (61%), Gaps = 9/185 (4%)
Query: 1772 LNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQL 1831
L K ++E+ ++ +L ++EKI Q+++++ + G M+VG S GKT ++ + EA++
Sbjct: 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQ 932
Query: 1832 IEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQF---AMSQNEN 1888
++ K E V++PK+IT QL+G D + EW+DG+ + R+ ++
Sbjct: 933 VDNI------KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTK 986
Query: 1889 RKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATIT 1948
R W+IFDG VD W+EN+NS+LDDNK L L +GE +AL ++FE QDL+ A+ ATI+
Sbjct: 987 RHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATIS 1046
Query: 1949 DESMV 1953
MV
Sbjct: 1047 RCGMV 1051
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 162/340 (47%), Gaps = 56/340 (16%)
Query: 1289 GRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKS 1348
W W + + S + +++ T +T R++ ++ ++ +P++ GP G+GK+
Sbjct: 1259 ANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKT 1318
Query: 1349 CYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKR 1408
+T S LR+ F F + + +NFS+ T T ++++ D
Sbjct: 1319 MTLT---------STLRA-FPDF----------EVVSLNFSSAT----TPELLLKTFDHH 1354
Query: 1409 RKGVYGPP---------LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKD 1459
+ P LGK VVF D++N+P +++G Q I +RQ ++ ++ D
Sbjct: 1355 CEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSD 1414
Query: 1460 VVAVKLIEIQLMCAMGPPSTGNTV--TPRFSRHFNQIVINKFDDDTMVTI---FSKILLW 1514
+KL +IQ + A PP+ V T RF RH ++++ ++ I F++ L+
Sbjct: 1415 HTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMK 1474
Query: 1515 HL-DTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLS 1573
L + R F+ + L A + + ES P ++HY+++ R+ +R + +L
Sbjct: 1475 LLPNLRSFA-------DNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDRALL-- 1524
Query: 1574 VPEAIE-----SLLSMKRLWVHEVLRVYYDRLVDSDDRLW 1608
EAI+ +L + RLW HE LR++ DRLV+++++ W
Sbjct: 1525 --EAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEW 1562
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 929 LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGP 988
LGK VVF D++N+P +++G Q I +RQ ++ ++ D +KL +IQ + A P
Sbjct: 1372 LGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNP 1431
Query: 989 PSTGNTV--TPRFSRH 1002
P+ V T RF RH
Sbjct: 1432 PTDAGRVQLTHRFLRH 1447
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 1106 YRMLSEALQLIEEWSNQGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGK 1165
Y L++AL+ S GG P GPAGTGKTET K L + + +VF C + D + +
Sbjct: 594 YLTLTQALE-----SRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSR 648
Query: 1166 FF 1167
F
Sbjct: 649 IF 650
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%)
Query: 1041 DLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFA 1100
D+FPG +L L K ++E+ ++ +L ++EKI Q+++++ + G M+VG S
Sbjct: 858 DVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGG 917
Query: 1101 GKTCAYRMLSEALQLIE 1117
GKT ++ + EA++ ++
Sbjct: 918 GKTTSWEVYLEAIEQVD 934
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 26/142 (18%)
Query: 661 FFFSCIWSMGACLTFETKPHFSNLLYGLMEKEFPASLRESLGLPVELCQPPAKPYLFTVP 720
+S +W +G + + +FS + + PA+ T+P
Sbjct: 1210 LLYSLMWGLGGSMGLVERENFSKFIQTIAITPVPAN---------------------TIP 1248
Query: 721 PQGTVYDYRFIKEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTH 780
+ DY + W W + + S + +++ T +T R++ ++ ++
Sbjct: 1249 ----LLDYS-VSIDDANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSE 1303
Query: 781 QKPVMFIGPTGTGKSCYITVSI 802
+P++ GP G+GK+ +T ++
Sbjct: 1304 HRPLILCGPPGSGKTMTLTSTL 1325
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 144 bits (363), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 90/145 (62%)
Query: 2 GGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEF 61
GG GPAGTGKTET K + + ++ +VFNC DS DY L + G+ GAW CFDEF
Sbjct: 428 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEF 487
Query: 62 NRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPD 121
NR+D +VLS V+ I IQ G+ +G+ I L +VFIT+NPGY GRSELP+
Sbjct: 488 NRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPE 547
Query: 122 NLKSLFRTVAMMVPDYALISEIIVK 146
NLK FR +M P I+E+I++
Sbjct: 548 NLKKSFREFSMKSPQSGTIAEMILQ 572
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 11/220 (5%)
Query: 316 SDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSF 375
S +F P I+ + +++ +++ ++ FL+K Q Y M + ++VG +
Sbjct: 656 SKIFDSAGTPLNSKAIV-QCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAG 714
Query: 376 AGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILA 435
GKT ++ + +A+ + + H + VI+ K +T LYG + EW DG+
Sbjct: 715 CGKTATWKTVIDAMAIFDG------HANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFT 768
Query: 436 VSYRQ----FAMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTS 491
R+ + +R W++FD +D ++E MNSVLDDNK L L +GE + + P
Sbjct: 769 SILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFR 828
Query: 492 LIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLN 531
++FE +L+ +PAT++RCG+++ +D LN
Sbjct: 829 ILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLN 868
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 149/306 (48%), Gaps = 25/306 (8%)
Query: 1756 GPGPPENSFSKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSF 1815
G P NS + + +++ +++ ++ FL+K Q Y M + ++VG +
Sbjct: 661 SAGTPLNS------KAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAG 714
Query: 1816 AGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILA 1875
GKT ++ + +A+ + + H + VI+ K +T LYG + EW DG+
Sbjct: 715 CGKTATWKTVIDAMAIFDG------HANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFT 768
Query: 1876 VSYRQ----FAMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTS 1931
R+ + +R W++FD +D ++E MNSVLDDNK L L +GE + + P
Sbjct: 769 SILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFR 828
Query: 1932 LIFEPQDLEVASPATITDESMVEDLSNLLN-SGEVPNIFASDEKAEICEKMGVIDRQKDK 1990
++FE +L+ +PATIT ++ +++ + S ++ ++ +A + K+ + + K K
Sbjct: 829 ILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSYEA-LDNKLSMFELDKLK 887
Query: 1991 SMQTDG-TMMALFKFFVDTPWPPDALLAVATRFLNEVELSEAERQISIDMCQNFHVSTQN 2049
+ +D M +L F D + + R N++E + Q+++ + ++ QN
Sbjct: 888 DLISDSFDMASLTNIFT---CSNDLVHILGVRTFNKLETA---VQLAVHLISSYRQWFQN 941
Query: 2050 LSDEFL 2055
L D+ L
Sbjct: 942 LDDKSL 947
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 167/364 (45%), Gaps = 51/364 (14%)
Query: 1313 IIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFL 1372
I++ T +T+++ + L+ ++ ++ GP G+GK+ I NN+ S
Sbjct: 1027 IVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKT--------MIMNNALRNSSL---- 1074
Query: 1373 LKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKR------RKGVYGPPLG--KRCVVF 1424
+ + +NFS T T + I+S L + KG+ P K V+F
Sbjct: 1075 --------YDVVGINFSKDT----TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1122
Query: 1425 VDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTV- 1483
D++N+P +++G+Q + LRQ ++ ++ + V + I ++ A PP+ +
Sbjct: 1123 CDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1182
Query: 1484 -TPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIFKE 1542
+ RF+RH + + ++ I+ +++ EF E +A++H++ E
Sbjct: 1183 MSERFTRHAAILYLGYPSGKSLSQIYE---IYYKAIFKLVPEFRSYTEPFARASVHLYNE 1239
Query: 1543 SLLNLLPTPTKSHYLFNLRDFARVIQGVLLSVPEA-IESLLSMKRLWVHEVLRVYYDRLV 1601
T +SHYLF+ R+ R+++GV ++ ++L S+ RLW +E R++ DRLV
Sbjct: 1240 CKAR-YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLV 1298
Query: 1602 DSDDRLWLFNTLKYTVEKFL-QEDMNQL-----------FANLKEANSTEPVGEYELRNL 1649
++ L TV+K+L +D+ + + KE N T+ V E R
Sbjct: 1299 GVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIEERFK 1358
Query: 1650 IYCD 1653
+CD
Sbjct: 1359 TFCD 1362
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 1123 GGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFF 1167
GG GPAGTGKTET K + + ++ +VFNC DS DY L +
Sbjct: 428 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLL 472
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 5/209 (2%)
Query: 2352 LQLAMSALHEKQEQNRIVQEKLQKLQNTXXXXXXXXXXXXXXXXXCVKKKQRAEDLIGKL 2411
++L + + QE R V L+KL + ++K+ + L+ L
Sbjct: 1637 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLPKAPP---EEKEASISLVKSL 1693
Query: 2412 GGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTWVKEVAACNIV 2471
EKERW +T K ++ +L G+ +I++ Y G R + + + +
Sbjct: 1694 TFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERGDMLVILKRLLGKFAVK 1753
Query: 2472 CTKDFQLGAVMGNPVEIRAWNIFGLPCDSFSIDNGIIIKNSRRW-PLMIDPQEQANKWIK 2530
+++ + E W GL + + ++N I+ NS+ P ++DP I
Sbjct: 1754 YDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVIS 1813
Query: 2531 NMEKANGLNVIRLSNTDYMRILEGAIGFG 2559
N N ++ +++ LE A+ FG
Sbjct: 1814 NY-YGNKTVLLSFLEEGFVKRLENAVRFG 1841
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 898 MNFSAQTSANQTQDIIMSKLDKR------RKGVYGPPLG--KRCVVFVDDVNMPLKEEFG 949
+NFS T T + I+S L + KG+ P K V+F D++N+P +++G
Sbjct: 1080 INFSKDT----TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYG 1135
Query: 950 AQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTV--TPRFSRH 1002
+Q + LRQ ++ ++ + V + I ++ A PP+ + + RF+RH
Sbjct: 1136 SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRH 1190
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 1013 DDTMVTIFSKILLWHL-DTRHESCKGITSDLFPGIELPETDYTILNKAVREVCEKANLQV 1071
+ T+V +++L L DT K S +F P I+ + +++ +++ +
Sbjct: 628 EKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTPLNSKAIV-QCLKDAGQRSGFSM 686
Query: 1072 TPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWSN 1121
+ FL+K Q Y M + ++VG + GKT ++ + +A+ + + +N
Sbjct: 687 SEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHAN 736
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 144 bits (363), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 90/145 (62%)
Query: 2 GGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEF 61
GG GPAGTGKTET K + + ++ +VFNC DS DY L + G+ GAW CFDEF
Sbjct: 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEF 706
Query: 62 NRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPD 121
NR+D +VLS V+ I IQ G+ +G+ I L +VFIT+NPGY GRSELP+
Sbjct: 707 NRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPE 766
Query: 122 NLKSLFRTVAMMVPDYALISEIIVK 146
NLK FR +M P I+E+I++
Sbjct: 767 NLKKSFREFSMKSPQSGTIAEMILQ 791
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 11/220 (5%)
Query: 316 SDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSF 375
S +F P I+ + +++ +++ ++ FL+K Q Y M + ++VG +
Sbjct: 875 SKIFDSAGTPLNSKAIV-QCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAG 933
Query: 376 AGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILA 435
GKT ++ + +A+ + + H + VI+ K +T LYG + EW DG+
Sbjct: 934 CGKTATWKTVIDAMAIFDG------HANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFT 987
Query: 436 VSYRQ----FAMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTS 491
R+ + +R W++FD +D ++E MNSVLDDNK L L +GE + + P
Sbjct: 988 SILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFR 1047
Query: 492 LIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLN 531
++FE +L+ +PAT++RCG+++ +D LN
Sbjct: 1048 ILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLN 1087
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 150/306 (49%), Gaps = 25/306 (8%)
Query: 1756 GPGPPENSFSKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSF 1815
G P NS + + +++ +++ ++ FL+K Q Y M + ++VG +
Sbjct: 880 SAGTPLNS------KAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAG 933
Query: 1816 AGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILA 1875
GKT ++ + +A+ + + H + VI+ K +T LYG + EW DG+
Sbjct: 934 CGKTATWKTVIDAMAIFDG------HANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFT 987
Query: 1876 VSYRQ----FAMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTS 1931
R+ + +R W++FD +D ++E MNSVLDDNK L L +GE + + P
Sbjct: 988 SILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFR 1047
Query: 1932 LIFEPQDLEVASPATITDESMVEDLSNLLN-SGEVPNIFASDEKAEICEKMGVIDRQKDK 1990
++FE +L+ +PATIT ++ +++ + S ++ ++ +A + K+ + + K K
Sbjct: 1048 ILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSYEA-LDNKLSMFELDKLK 1106
Query: 1991 SMQTDG-TMMALFKFFVDTPWPPDALLAVATRFLNEVELSEAERQISIDMCQNFHVSTQN 2049
+ +D M +L F + D + + R N++E + Q+++ + ++ QN
Sbjct: 1107 DLISDSFDMASLTNIFTCS---NDLVHILGVRTFNKLETA---VQLAVHLISSYRQWFQN 1160
Query: 2050 LSDEFL 2055
L D+ L
Sbjct: 1161 LDDKSL 1166
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 167/364 (45%), Gaps = 51/364 (14%)
Query: 1313 IIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFL 1372
I++ T +T+++ + L+ ++ ++ GP G+GK+ I NN+ S
Sbjct: 1246 IVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKT--------MIMNNALRNSSL---- 1293
Query: 1373 LKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKR------RKGVYGPPLG--KRCVVF 1424
+ + +NFS T T + I+S L + KG+ P K V+F
Sbjct: 1294 --------YDVVGINFSKDT----TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341
Query: 1425 VDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTV- 1483
D++N+P +++G+Q + LRQ ++ ++ + V + I ++ A PP+ +
Sbjct: 1342 CDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401
Query: 1484 -TPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIFKE 1542
+ RF+RH + + ++ I+ +++ EF E +A++H++ E
Sbjct: 1402 MSERFTRHAAILYLGYPSGKSLSQIYE---IYYKAIFKLVPEFRSYTEPFARASVHLYNE 1458
Query: 1543 SLLNLLPTPTKSHYLFNLRDFARVIQGVLLSVPEA-IESLLSMKRLWVHEVLRVYYDRLV 1601
T +SHYLF+ R+ R+++GV ++ ++L S+ RLW +E R++ DRLV
Sbjct: 1459 CKAR-YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLV 1517
Query: 1602 DSDDRLWLFNTLKYTVEKFL-QEDMNQL-----------FANLKEANSTEPVGEYELRNL 1649
++ L TV+K+L +D+ + + KE N T+ V E R
Sbjct: 1518 GVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIEERFK 1577
Query: 1650 IYCD 1653
+CD
Sbjct: 1578 TFCD 1581
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 1123 GGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFF 1167
GG GPAGTGKTET K + + ++ +VFNC DS DY L +
Sbjct: 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLL 691
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 15/209 (7%)
Query: 2352 LQLAMSALHEKQEQNRIVQEKLQKLQNTXXXXXXXXXXXXXXXXXCVKKKQRAEDLIGKL 2411
++L + + QE R V L+KL + K + L+ L
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNEL-------------NKTLSISLVKSL 1902
Query: 2412 GGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTWVKEVAACNIV 2471
EKERW +T K ++ +L G+ +I++ Y G R + + + +
Sbjct: 1903 TFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKRLLGKFAVK 1962
Query: 2472 CTKDFQLGAVMGNPVEIRAWNIFGLPCDSFSIDNGIIIKNSRRW-PLMIDPQEQANKWIK 2530
+++ + E W GL + + ++N I+ NS+ P ++DP I
Sbjct: 1963 YDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVIS 2022
Query: 2531 NMEKANGLNVIRLSNTDYMRILEGAIGFG 2559
N N ++ +++ LE AI FG
Sbjct: 2023 NY-YGNKTVLLSFLEEGFVKRLENAIRFG 2050
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 898 MNFSAQTSANQTQDIIMSKLDKR------RKGVYGPPLG--KRCVVFVDDVNMPLKEEFG 949
+NFS T T + I+S L + KG+ P K V+F D++N+P +++G
Sbjct: 1299 INFSKDT----TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYG 1354
Query: 950 AQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTV--TPRFSRH 1002
+Q + LRQ ++ ++ + V + I ++ A PP+ + + RF+RH
Sbjct: 1355 SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRH 1409
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 1013 DDTMVTIFSKILLWHL-DTRHESCKGITSDLFPGIELPETDYTILNKAVREVCEKANLQV 1071
+ T+V +++L L DT K S +F P I+ + +++ +++ +
Sbjct: 847 EKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTPLNSKAIV-QCLKDAGQRSGFSM 905
Query: 1072 TPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWSN 1121
+ FL+K Q Y M + ++VG + GKT ++ + +A+ + + +N
Sbjct: 906 SEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHAN 955
>pdb|2RR7|A Chain A, Microtubule Binding Domain Of Dynein-C
Length = 155
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 94/136 (69%), Gaps = 2/136 (1%)
Query: 2214 NTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPD-AGGQLVEDYWGPSKKLLG 2272
+TL DIT VK MKSPP V+ V++A+CI+KGVK RV D A G++V+DYW SKK+L
Sbjct: 21 DTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTASGRMVDDYWEASKKMLM 80
Query: 2273 DIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYD 2332
+ FL+ L F+KD++P VI ++ F +F P+V++K S A GLC WVIA+ KYD
Sbjct: 81 EFDFLDSLRKFDKDHIPPEVIVKIR-PFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYD 139
Query: 2333 KVAKIVGPKKEALRQA 2348
KV K V PK++ LR+A
Sbjct: 140 KVIKEVEPKRQKLREA 155
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As
A Fusion With Seryl-Trna Synthetase
pdb|3ERR|B Chain B, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As
A Fusion With Seryl-Trna Synthetase
Length = 536
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 2215 TLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLVEDYWGPSKKLLGDI 2274
++ + V++M +PP VKL ++++ +L G E D W + ++
Sbjct: 71 SIKKQHLVEVRSMANPPAAVKLALESIALLLG---ESTTD---------WKQIRSIIMRE 118
Query: 2275 KFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKV 2334
F+ + NF+ + + A+ ++++ ++S ++ E+V ++S AA + KW IA Y +
Sbjct: 119 NFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADM 178
Query: 2335 AKIVGPKKEALRQAEE 2350
K V P + L++ E+
Sbjct: 179 LKRVEPLRNELQKLED 194
>pdb|3J1T|A Chain A, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|A Chain A, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 164
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 2224 VKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLVEDYWGPSKKLLGDIKFLEGLTNF 2283
V++M +PP VKL ++++C+L G E D W + ++ F+ + NF
Sbjct: 42 VRSMANPPAAVKLALESICLLLG---ESTTD---------WKQIRSIIMRENFIPTIVNF 89
Query: 2284 NKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKE 2343
+ + + A+ ++++ ++S ++ E+V ++S A + KW IA Y + K V P +
Sbjct: 90 SAEEISDAIREKMKKNYMSNPSYNYEIVNRASLACGPMVKWAIAQLNYADMLKRVEPLRN 149
Query: 2344 ALRQAEE 2350
L++ E+
Sbjct: 150 ELQKLED 156
>pdb|1DLM|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Calcoaceticus Native Data
pdb|1DLM|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Calcoaceticus Native Data
pdb|1DLQ|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter Sp.
Adp1 Inhibited By Bound Mercury
pdb|1DLQ|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter Sp.
Adp1 Inhibited By Bound Mercury
pdb|1DLT|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter Sp.
Adp1 With Bound Catechol
pdb|1DLT|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter Sp.
Adp1 With Bound Catechol
pdb|1DMH|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter Sp.
Adp1 With Bound 4-Methylcatechol
pdb|1DMH|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter Sp.
Adp1 With Bound 4-Methylcatechol
Length = 311
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1499 FDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQ 1531
FD D +K+ +WH +T+GF FDP EQ
Sbjct: 141 FDADGKPLPNAKVEIWHANTKGFYSHFDPTGEQ 173
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And Regulator
Of Clpap Protease: Structural Basis Of Differences In
Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 1101 GKTCAYRMLSEALQLIEEWSNQGGAP------EGPAGTGKTETTKDLAKAVAKLCIVFNC 1154
G+ A L+EA+++ P GP G GKTE T L+KA+ + F+
Sbjct: 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521
Query: 1155 SDSMD 1159
S+ M+
Sbjct: 522 SEYME 526
>pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
Enzyme
Length = 757
Score = 32.7 bits (73), Expect = 2.9, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 2261 EDYWGPSK-KLLGDIKFLEGLTNFNK-DNVPAAVI----KRLEDEFLSREDFDPEVVKKS 2314
ED +G K+ G +F+ L K D +PA+V+ K+ D L D E +
Sbjct: 530 EDAFGDXDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVXXEAIDTP 589
Query: 2315 STAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEE 2350
+ + + DK+ +++GPK++ + Q +E
Sbjct: 590 DEXSPNAPRIITVKIPVDKIGEVIGPKRQXINQIQE 625
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,633,208
Number of Sequences: 62578
Number of extensions: 3111842
Number of successful extensions: 8354
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8215
Number of HSP's gapped (non-prelim): 107
length of query: 2567
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2452
effective length of database: 7,776,867
effective search space: 19068877884
effective search space used: 19068877884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)