Query psy12680
Match_columns 2567
No_of_seqs 346 out of 2196
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 16:49:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3595|consensus 100.0 5E-138 1E-142 1474.2 91.9 1069 1227-2565 45-1155(1395)
2 COG5245 DYN1 Dynein, heavy cha 100.0 3E-123 7E-128 1172.3 60.9 1517 9-2564 952-2531(3164)
3 PF12777 MT: Microtubule-bindi 100.0 5.7E-66 1.2E-70 645.5 33.1 342 2092-2465 1-344 (344)
4 PF12775 AAA_7: P-loop contain 100.0 3.1E-64 6.6E-69 608.9 10.9 270 1304-1591 3-272 (272)
5 PF12774 AAA_6: Hydrolytic ATP 100.0 1.8E-56 3.9E-61 526.0 15.4 199 1-224 33-231 (231)
6 PF12775 AAA_7: P-loop contain 100.0 7.4E-45 1.6E-49 440.2 6.2 193 754-1029 6-198 (272)
7 KOG3595|consensus 100.0 1.6E-33 3.4E-38 404.0 69.5 252 655-1029 39-291 (1395)
8 PF12780 AAA_8: P-loop contain 100.0 5.9E-38 1.3E-42 376.8 12.9 199 1805-2080 31-268 (268)
9 COG5271 MDN1 AAA ATPase contai 100.0 5.6E-30 1.2E-34 327.7 57.7 1244 6-1880 470-1917(4600)
10 COG5245 DYN1 Dynein, heavy cha 99.9 1.4E-22 3.1E-27 261.5 44.3 961 739-2438 1452-2755(3164)
11 COG5271 MDN1 AAA ATPase contai 99.9 2.9E-19 6.3E-24 231.2 45.1 900 6-1403 894-1898(4600)
12 PF12781 AAA_9: ATP-binding dy 99.8 3.9E-20 8.5E-25 218.3 6.8 85 2481-2566 1-85 (228)
13 TIGR02640 gas_vesic_GvpN gas v 99.4 1.1E-12 2.5E-17 160.3 14.2 131 6-145 27-195 (262)
14 PF12774 AAA_6: Hydrolytic ATP 99.3 5.4E-12 1.2E-16 149.9 12.5 216 1305-1569 3-222 (231)
15 KOG1808|consensus 99.1 7.5E-09 1.6E-13 146.6 27.5 113 366-498 441-559 (1856)
16 KOG1808|consensus 99.1 9.5E-10 2.1E-14 155.5 18.4 117 4-127 444-578 (1856)
17 PF07728 AAA_5: AAA domain (dy 99.1 8.4E-11 1.8E-15 130.2 6.5 114 5-127 4-139 (139)
18 TIGR01650 PD_CobS cobaltochela 99.1 2.1E-10 4.4E-15 140.9 7.8 133 5-145 69-230 (327)
19 PRK11034 clpA ATP-dependent Cl 99.0 3.6E-09 7.7E-14 144.7 19.7 191 1336-1571 490-712 (758)
20 TIGR03345 VI_ClpV1 type VI sec 99.0 2.6E-09 5.6E-14 148.9 16.9 122 931-1066 280-413 (852)
21 TIGR03346 chaperone_ClpB ATP-d 99.0 8.7E-09 1.9E-13 145.0 21.5 122 931-1066 266-399 (852)
22 PF07728 AAA_5: AAA domain (dy 99.0 5.1E-10 1.1E-14 124.0 7.3 125 367-510 1-139 (139)
23 TIGR02639 ClpA ATP-dependent C 99.0 7.8E-09 1.7E-13 143.6 19.9 117 932-1062 275-404 (731)
24 KOG0733|consensus 98.9 1.3E-08 2.7E-13 128.1 14.1 144 1333-1514 544-694 (802)
25 PRK10865 protein disaggregatio 98.9 8.1E-08 1.7E-12 134.7 22.5 80 931-1024 271-354 (857)
26 CHL00095 clpC Clp protease ATP 98.8 1.9E-07 4.1E-12 131.4 23.8 123 931-1067 271-405 (821)
27 PF07726 AAA_3: ATPase family 98.8 1.1E-08 2.3E-13 108.6 8.2 112 6-127 5-129 (131)
28 PHA02244 ATPase-like protein 98.8 2.6E-08 5.7E-13 123.4 11.0 120 5-136 124-262 (383)
29 TIGR02639 ClpA ATP-dependent C 98.6 1.2E-06 2.7E-11 122.0 19.8 151 1326-1514 194-360 (731)
30 TIGR03345 VI_ClpV1 type VI sec 98.5 1.9E-05 4E-10 111.0 29.9 149 1334-1513 208-364 (852)
31 TIGR01650 PD_CobS cobaltochela 98.5 1.3E-06 2.9E-11 107.8 15.0 218 1313-1571 46-281 (327)
32 COG0714 MoxR-like ATPases [Gen 98.5 3.8E-07 8.3E-12 115.9 9.6 132 5-145 48-199 (329)
33 KOG0996|consensus 98.4 0.0035 7.6E-08 85.4 45.6 50 1912-1963 210-263 (1293)
34 PRK02224 chromosome segregatio 98.4 0.0036 7.8E-08 90.6 48.5 92 2337-2429 538-629 (880)
35 TIGR02640 gas_vesic_GvpN gas v 98.3 3.5E-06 7.6E-11 103.6 14.0 141 357-517 13-184 (262)
36 CHL00095 clpC Clp protease ATP 98.3 7.4E-06 1.6E-10 115.6 18.9 153 1326-1514 191-356 (821)
37 PHA02244 ATPase-like protein 98.3 3.1E-06 6.7E-11 105.4 12.3 137 357-517 111-260 (383)
38 PRK10865 protein disaggregatio 98.2 2.7E-05 5.9E-10 109.8 20.5 158 1325-1513 189-355 (857)
39 COG0542 clpA ATP-binding subun 98.2 8.4E-05 1.8E-09 100.3 22.8 181 1336-1569 523-749 (786)
40 KOG0733|consensus 98.1 2E-05 4.3E-10 100.3 13.4 95 1418-1515 281-377 (802)
41 TIGR03346 chaperone_ClpB ATP-d 98.1 9.7E-05 2.1E-09 104.8 20.6 82 1419-1514 266-351 (852)
42 PF12128 DUF3584: Protein of u 98.0 0.021 4.5E-07 84.5 43.5 84 2342-2425 475-559 (1201)
43 TIGR02169 SMC_prok_A chromosom 97.9 0.028 6.1E-07 84.2 44.1 25 1805-1829 23-47 (1164)
44 KOG0994|consensus 97.9 0.036 7.9E-07 74.8 38.3 78 2335-2412 1590-1667(1758)
45 TIGR02168 SMC_prok_B chromosom 97.9 0.026 5.7E-07 84.6 42.4 25 1806-1830 24-48 (1179)
46 PRK11331 5-methylcytosine-spec 97.9 1.3E-05 2.8E-10 102.6 6.2 75 1418-1498 271-357 (459)
47 TIGR03185 DNA_S_dndD DNA sulfu 97.9 0.096 2.1E-06 73.1 43.9 84 2337-2420 392-477 (650)
48 KOG1051|consensus 97.8 0.00033 7.1E-09 95.9 18.6 100 910-1026 261-365 (898)
49 COG1196 Smc Chromosome segrega 97.8 0.1 2.2E-06 77.3 45.7 27 1805-1831 24-50 (1163)
50 TIGR01243 CDC48 AAA family ATP 97.8 0.00025 5.4E-09 99.6 17.8 123 5-145 217-356 (733)
51 PRK00411 cdc6 cell division co 97.8 0.00014 3.1E-09 95.1 13.4 160 1325-1515 44-223 (394)
52 PRK11034 clpA ATP-dependent Cl 97.7 4.3E-05 9.3E-10 105.4 6.3 98 6-113 494-609 (758)
53 KOG0735|consensus 97.7 0.00021 4.5E-09 92.7 11.5 142 1331-1513 698-849 (952)
54 PF07724 AAA_2: AAA domain (Cd 97.6 6.3E-05 1.4E-09 86.3 5.7 71 6-77 9-104 (171)
55 TIGR00763 lon ATP-dependent pr 97.6 9.3E-05 2E-09 104.1 7.9 133 1421-1572 416-552 (775)
56 TIGR02881 spore_V_K stage V sp 97.5 0.00032 6.8E-09 86.5 10.9 81 1421-1514 107-193 (261)
57 PRK11331 5-methylcytosine-spec 97.5 0.00041 8.8E-09 89.2 11.7 153 358-518 187-358 (459)
58 PF00004 AAA: ATPase family as 97.5 0.00024 5.2E-09 77.6 8.0 63 6-68 4-74 (132)
59 cd00009 AAA The AAA+ (ATPases 97.5 0.00023 5E-09 78.4 7.8 107 5-127 24-143 (151)
60 KOG0979|consensus 97.4 0.11 2.4E-06 70.8 32.4 42 2081-2122 247-288 (1072)
61 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.19 4.2E-06 70.2 36.6 21 1808-1828 31-51 (650)
62 PRK00080 ruvB Holliday junctio 97.4 0.0005 1.1E-08 87.7 10.3 127 6-145 57-190 (328)
63 TIGR02169 SMC_prok_A chromosom 97.4 0.17 3.7E-06 76.0 38.6 17 1337-1353 26-42 (1164)
64 KOG0994|consensus 97.4 0.21 4.6E-06 68.0 33.4 46 2174-2219 1547-1592(1758)
65 TIGR02880 cbbX_cfxQ probable R 97.4 0.00032 6.8E-09 87.3 7.7 81 1421-1514 123-210 (284)
66 COG0714 MoxR-like ATPases [Gen 97.4 0.00038 8.3E-09 88.7 8.6 157 1324-1508 33-198 (329)
67 KOG0736|consensus 97.3 0.0021 4.6E-08 84.7 14.8 144 1333-1513 430-577 (953)
68 TIGR03689 pup_AAA proteasome A 97.3 0.00052 1.1E-08 90.5 9.4 87 1417-1514 287-380 (512)
69 TIGR02928 orc1/cdc6 family rep 97.3 0.0016 3.5E-08 84.4 13.4 163 1325-1513 29-213 (365)
70 KOG0730|consensus 97.3 0.0034 7.3E-08 82.2 15.2 92 2-93 220-325 (693)
71 smart00382 AAA ATPases associa 97.2 0.00041 8.9E-09 75.6 6.0 112 5-131 7-142 (148)
72 TIGR00635 ruvB Holliday juncti 97.2 0.00088 1.9E-08 84.6 9.3 128 5-145 35-169 (305)
73 CHL00181 cbbX CbbX; Provisiona 97.2 0.00078 1.7E-08 83.8 8.3 81 1421-1514 124-211 (287)
74 KOG0736|consensus 97.2 0.0048 1E-07 81.4 15.3 119 6-143 437-571 (953)
75 PRK04195 replication factor C 97.2 0.0011 2.4E-08 88.8 10.1 118 5-145 44-170 (482)
76 PTZ00112 origin recognition co 97.1 0.0018 4E-08 87.1 11.2 168 1321-1514 765-951 (1164)
77 PF01078 Mg_chelatase: Magnesi 97.1 0.00073 1.6E-08 78.7 6.1 57 1418-1480 105-162 (206)
78 PRK06851 hypothetical protein; 97.1 0.011 2.5E-07 75.1 17.1 27 364-390 213-239 (367)
79 PRK13531 regulatory ATPase Rav 97.1 0.0009 1.9E-08 86.8 7.4 114 5-137 44-180 (498)
80 TIGR00763 lon ATP-dependent pr 97.1 0.0012 2.5E-08 93.3 9.0 128 5-143 352-500 (775)
81 cd00009 AAA The AAA+ (ATPases 97.0 0.001 2.2E-08 73.3 6.8 114 1333-1479 18-132 (151)
82 PRK00411 cdc6 cell division co 97.0 0.0028 6.1E-08 83.0 12.0 85 930-1027 137-223 (394)
83 PHA02544 44 clamp loader, smal 97.0 0.0019 4.2E-08 82.0 9.8 113 6-143 49-168 (316)
84 PTZ00454 26S protease regulato 97.0 0.0009 2E-08 86.7 6.8 84 1419-1513 238-330 (398)
85 KOG0735|consensus 97.0 0.0088 1.9E-07 78.3 15.3 145 1331-1512 428-586 (952)
86 PRK10733 hflB ATP-dependent me 97.0 0.0015 3.1E-08 90.2 9.1 137 1334-1513 185-336 (644)
87 PRK13407 bchI magnesium chelat 97.0 0.00089 1.9E-08 84.5 6.4 121 5-135 34-202 (334)
88 PF01078 Mg_chelatase: Magnesi 97.0 0.0004 8.8E-09 80.8 2.9 54 932-991 107-162 (206)
89 smart00350 MCM minichromosome 97.0 0.0042 9.2E-08 83.6 12.8 125 6-139 242-391 (509)
90 TIGR01241 FtsH_fam ATP-depende 96.9 0.0018 3.8E-08 87.3 8.1 45 1467-1514 193-240 (495)
91 TIGR02881 spore_V_K stage V sp 96.9 0.0034 7.4E-08 77.5 9.9 81 933-1026 107-193 (261)
92 PRK14962 DNA polymerase III su 96.8 0.0025 5.4E-08 84.4 8.7 159 1327-1513 26-190 (472)
93 PRK10787 DNA-binding ATP-depen 96.8 0.0026 5.7E-08 88.9 9.2 132 1420-1572 417-553 (784)
94 PHA02544 44 clamp loader, smal 96.8 0.0034 7.3E-08 79.8 9.3 140 1327-1514 33-175 (316)
95 TIGR02680 conserved hypothetic 96.8 3.8 8.2E-05 61.9 41.8 22 1805-1826 24-45 (1353)
96 KOG0727|consensus 96.7 0.0011 2.5E-08 76.3 4.0 141 1332-1513 187-340 (408)
97 COG0606 Predicted ATPase with 96.7 0.0014 3E-08 83.5 4.9 66 1410-1481 271-340 (490)
98 PRK10923 glnG nitrogen regulat 96.7 0.008 1.7E-07 80.7 12.3 213 1312-1572 139-369 (469)
99 COG0419 SbcC ATPase involved i 96.7 7.4 0.00016 56.9 45.8 490 1806-2434 26-607 (908)
100 KOG0652|consensus 96.7 0.0013 2.8E-08 76.1 3.9 77 1419-1509 264-352 (424)
101 PRK03992 proteasome-activating 96.7 0.0019 4.2E-08 84.0 6.0 84 1419-1513 224-316 (389)
102 PRK10787 DNA-binding ATP-depen 96.6 0.0062 1.3E-07 85.3 10.9 132 5-144 354-502 (784)
103 CHL00195 ycf46 Ycf46; Provisio 96.6 0.0018 3.9E-08 85.7 5.3 137 1334-1514 259-407 (489)
104 COG0606 Predicted ATPase with 96.6 0.0011 2.3E-08 84.6 2.9 64 923-992 272-339 (490)
105 COG1196 Smc Chromosome segrega 96.6 1.5 3.2E-05 65.6 35.4 17 1338-1354 28-44 (1163)
106 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0033 7.1E-08 75.8 6.8 133 1332-1512 36-172 (226)
107 TIGR02031 BchD-ChlD magnesium 96.6 0.017 3.6E-07 79.0 14.2 132 5-145 21-171 (589)
108 PF12128 DUF3584: Protein of u 96.6 0.42 9.1E-06 71.2 29.5 86 2339-2424 624-710 (1201)
109 PRK08084 DNA replication initi 96.6 0.0035 7.6E-08 76.1 6.9 140 1324-1510 33-178 (235)
110 PRK09862 putative ATP-dependen 96.6 0.0018 3.8E-08 85.7 4.4 77 932-1014 295-391 (506)
111 PRK03992 proteasome-activating 96.5 0.0052 1.1E-07 80.1 8.5 121 5-144 170-311 (389)
112 PRK14956 DNA polymerase III su 96.5 0.023 5E-07 74.4 14.0 155 1327-1513 30-194 (484)
113 KOG0161|consensus 96.5 4.1 8.8E-05 61.6 37.7 97 2341-2437 1644-1740(1930)
114 PF00004 AAA: ATPase family as 96.5 0.0014 3.1E-08 71.5 2.4 116 1337-1488 1-120 (132)
115 PRK09862 putative ATP-dependen 96.5 0.0031 6.8E-08 83.4 5.9 79 1418-1502 293-391 (506)
116 KOG0734|consensus 96.5 0.0013 2.9E-08 83.0 2.3 145 1335-1526 338-494 (752)
117 KOG0976|consensus 96.5 5.9 0.00013 53.1 36.1 95 2335-2429 343-447 (1265)
118 TIGR02974 phageshock_pspF psp 96.5 0.011 2.3E-07 75.4 10.4 161 1322-1513 10-188 (329)
119 COG1222 RPT1 ATP-dependent 26S 96.5 0.0032 7E-08 77.2 5.3 134 1334-1510 185-333 (406)
120 TIGR02168 SMC_prok_B chromosom 96.4 1.4 3E-05 66.5 34.4 31 2519-2550 1124-1156(1179)
121 KOG0730|consensus 96.4 0.044 9.6E-07 72.3 15.7 23 1805-1827 468-490 (693)
122 TIGR02442 Cob-chelat-sub cobal 96.4 0.0064 1.4E-07 83.9 8.8 121 5-136 30-199 (633)
123 PLN00020 ribulose bisphosphate 96.4 0.0019 4.1E-08 80.4 3.2 88 1418-1513 211-312 (413)
124 PF07888 CALCOCO1: Calcium bin 96.4 4.6 9.9E-05 53.8 33.5 50 2335-2384 303-352 (546)
125 PRK04195 replication factor C 96.4 0.013 2.9E-07 78.6 11.3 157 1311-1513 14-174 (482)
126 TIGR00382 clpX endopeptidase C 96.4 0.0053 1.2E-07 79.5 7.1 61 6-66 122-195 (413)
127 KOG2028|consensus 96.4 0.0067 1.4E-07 73.7 7.2 134 1326-1510 152-292 (554)
128 PRK05342 clpX ATP-dependent pr 96.4 0.005 1.1E-07 80.1 6.8 62 6-67 114-188 (412)
129 PF07724 AAA_2: AAA domain (Cd 96.4 0.00087 1.9E-08 77.1 -0.1 119 1336-1477 5-130 (171)
130 COG0542 clpA ATP-binding subun 96.3 0.0024 5.2E-08 86.8 3.9 98 6-113 527-645 (786)
131 COG2256 MGS1 ATPase related to 96.3 0.0099 2.2E-07 74.2 8.8 129 1327-1510 39-174 (436)
132 TIGR01241 FtsH_fam ATP-depende 96.3 0.007 1.5E-07 81.5 8.3 121 5-144 93-234 (495)
133 PLN03025 replication factor C 96.3 0.012 2.7E-07 74.8 10.1 116 6-145 40-168 (319)
134 PRK12422 chromosomal replicati 96.3 0.016 3.6E-07 76.4 11.3 81 1419-1513 202-285 (445)
135 CHL00081 chlI Mg-protoporyphyr 96.3 0.01 2.2E-07 75.4 8.9 131 5-145 43-229 (350)
136 PRK07003 DNA polymerase III su 96.3 0.011 2.5E-07 79.8 9.7 158 1327-1513 28-192 (830)
137 PF12777 MT: Microtubule-bindi 96.3 0.56 1.2E-05 60.4 24.5 61 2338-2398 223-283 (344)
138 TIGR02030 BchI-ChlI magnesium 96.3 0.009 1.9E-07 75.8 8.1 82 53-144 132-215 (337)
139 CHL00176 ftsH cell division pr 96.3 0.0093 2E-07 81.6 8.7 85 1419-1514 275-368 (638)
140 CHL00181 cbbX CbbX; Provisiona 96.3 0.0063 1.4E-07 75.9 6.6 81 933-1026 124-211 (287)
141 CHL00176 ftsH cell division pr 96.2 0.0085 1.8E-07 82.0 8.1 62 4-65 220-288 (638)
142 PRK15424 propionate catabolism 96.2 0.032 6.9E-07 75.0 13.3 180 1312-1514 220-418 (538)
143 PRK04863 mukB cell division pr 96.2 8.8 0.00019 57.9 38.7 120 2322-2442 495-628 (1486)
144 TIGR00635 ruvB Holliday juncti 96.2 0.026 5.5E-07 71.4 11.8 118 367-517 32-158 (305)
145 PRK03918 chromosome segregatio 96.2 4.6 9.9E-05 59.0 36.2 16 1337-1352 26-41 (880)
146 TIGR02902 spore_lonB ATP-depen 96.1 0.015 3.1E-07 78.8 9.7 163 1332-1513 84-277 (531)
147 PRK15429 formate hydrogenlyase 96.1 0.018 3.9E-07 80.7 10.9 160 1312-1501 377-549 (686)
148 PRK00080 ruvB Holliday junctio 96.1 0.028 6.2E-07 71.8 11.8 118 366-516 52-178 (328)
149 PRK03918 chromosome segregatio 96.1 4.7 0.0001 58.9 35.9 70 2389-2461 388-457 (880)
150 PLN00020 ribulose bisphosphate 96.1 0.011 2.4E-07 73.9 7.6 85 930-1025 211-312 (413)
151 PRK14958 DNA polymerase III su 96.1 0.011 2.5E-07 79.0 8.5 145 358-532 31-193 (509)
152 TIGR01242 26Sp45 26S proteasom 96.1 0.0037 8E-08 81.0 3.6 83 1420-1512 216-306 (364)
153 PF09730 BicD: Microtubule-ass 96.1 11 0.00023 52.4 35.8 58 2374-2434 355-412 (717)
154 TIGR00606 rad50 rad50. This fa 96.1 16 0.00036 55.5 41.8 155 2283-2437 687-874 (1311)
155 TIGR01817 nifA Nif-specific re 96.1 0.037 7.9E-07 75.5 13.2 212 1313-1572 198-426 (534)
156 PTZ00361 26 proteosome regulat 96.1 0.0029 6.3E-08 82.6 2.4 83 1419-1512 276-367 (438)
157 PRK13342 recombination factor 96.1 0.011 2.3E-07 78.0 7.6 139 1326-1514 26-166 (413)
158 PRK06893 DNA replication initi 96.0 0.014 3E-07 70.7 8.0 79 1421-1512 93-174 (229)
159 PRK14961 DNA polymerase III su 96.0 0.014 3E-07 75.6 8.4 139 362-517 35-177 (363)
160 PRK12402 replication factor C 96.0 0.018 3.9E-07 73.7 9.5 116 5-144 41-193 (337)
161 TIGR02329 propionate_PrpR prop 96.0 0.04 8.6E-07 74.2 12.9 172 1312-1514 213-403 (526)
162 PRK08903 DnaA regulatory inact 96.0 0.012 2.5E-07 71.2 7.0 127 1333-1512 41-170 (227)
163 PRK13531 regulatory ATPase Rav 96.0 0.013 2.7E-07 76.5 7.6 28 1326-1353 31-58 (498)
164 TIGR00606 rad50 rad50. This fa 96.0 5.8 0.00012 60.2 36.4 86 2342-2429 1004-1091(1311)
165 PRK14962 DNA polymerase III su 96.0 0.018 3.8E-07 76.5 9.2 116 6-145 42-186 (472)
166 PRK05342 clpX ATP-dependent pr 96.0 0.024 5.3E-07 73.9 10.3 77 1334-1434 108-188 (412)
167 KOG0726|consensus 96.0 0.0066 1.4E-07 71.8 4.5 75 1421-1509 280-366 (440)
168 PRK12323 DNA polymerase III su 96.0 0.014 3E-07 78.2 7.9 158 1327-1513 28-197 (700)
169 PRK00440 rfc replication facto 95.9 0.027 5.9E-07 71.5 10.4 117 5-145 43-171 (319)
170 smart00382 AAA ATPases associa 95.9 0.003 6.5E-08 68.8 1.4 20 1334-1353 2-21 (148)
171 PRK14960 DNA polymerase III su 95.9 0.017 3.7E-07 77.5 8.1 159 1327-1514 27-192 (702)
172 COG0464 SpoVK ATPases of the A 95.9 0.003 6.6E-08 85.2 1.3 89 1418-1513 334-424 (494)
173 PRK11608 pspF phage shock prot 95.8 0.08 1.7E-06 67.6 13.8 172 1313-1512 8-194 (326)
174 PRK02224 chromosome segregatio 95.8 11 0.00023 55.3 37.2 106 2331-2437 504-609 (880)
175 PRK08691 DNA polymerase III su 95.8 0.017 3.8E-07 78.1 8.1 158 1327-1513 28-192 (709)
176 KOG0731|consensus 95.8 0.01 2.3E-07 80.2 6.0 86 1418-1511 402-494 (774)
177 TIGR03689 pup_AAA proteasome A 95.8 0.024 5.2E-07 75.3 9.1 63 2-64 218-301 (512)
178 PRK05022 anaerobic nitric oxid 95.8 0.031 6.6E-07 75.7 10.4 155 1316-1500 192-359 (509)
179 KOG1029|consensus 95.8 1.6 3.5E-05 58.0 24.5 103 2341-2443 435-538 (1118)
180 PF05496 RuvB_N: Holliday junc 95.8 0.0091 2E-07 70.3 4.6 70 6-76 56-125 (233)
181 KOG0161|consensus 95.8 10 0.00022 57.7 35.8 41 2106-2146 1055-1095(1930)
182 TIGR00362 DnaA chromosomal rep 95.8 0.018 3.9E-07 75.7 7.9 45 1470-1514 236-283 (405)
183 PRK13808 adenylate kinase; Pro 95.8 0.015 3.2E-07 73.1 6.6 107 368-497 3-116 (333)
184 PHA02562 46 endonuclease subun 95.7 2.8 6.1E-05 57.9 29.4 80 2341-2420 328-407 (562)
185 PRK08903 DnaA regulatory inact 95.7 0.026 5.7E-07 68.1 8.6 66 5-77 47-115 (227)
186 PLN03025 replication factor C 95.7 0.047 1E-06 69.5 11.1 117 364-517 34-157 (319)
187 PRK07003 DNA polymerase III su 95.7 0.037 8.1E-07 75.1 10.4 130 360-517 33-177 (830)
188 PF05496 RuvB_N: Holliday junc 95.7 0.024 5.1E-07 66.9 7.5 128 1336-1509 52-189 (233)
189 PRK13342 recombination factor 95.7 0.031 6.7E-07 73.7 9.6 112 6-145 42-161 (413)
190 PF00158 Sigma54_activat: Sigm 95.7 0.021 4.5E-07 65.6 7.0 126 1322-1477 10-144 (168)
191 PRK06645 DNA polymerase III su 95.7 0.028 6E-07 75.0 9.0 150 1335-1513 44-201 (507)
192 PRK06645 DNA polymerase III su 95.6 0.017 3.6E-07 77.1 6.8 141 362-517 40-186 (507)
193 PRK00149 dnaA chromosomal repl 95.6 0.0084 1.8E-07 79.9 4.1 45 1470-1514 248-295 (450)
194 PTZ00111 DNA replication licen 95.6 0.019 4.1E-07 79.5 7.2 123 6-135 498-642 (915)
195 PRK10246 exonuclease subunit S 95.6 24 0.00052 52.4 48.0 24 1806-1829 31-54 (1047)
196 TIGR00368 Mg chelatase-related 95.6 0.016 3.5E-07 77.3 6.3 54 1418-1477 294-348 (499)
197 PRK14088 dnaA chromosomal repl 95.6 0.011 2.4E-07 78.1 4.9 78 1421-1513 196-277 (440)
198 TIGR03015 pepcterm_ATPase puta 95.5 0.049 1.1E-06 67.5 10.2 168 1312-1513 20-206 (269)
199 COG1474 CDC6 Cdc6-related prot 95.5 0.072 1.6E-06 68.6 11.6 179 1322-1533 28-224 (366)
200 PF05729 NACHT: NACHT domain 95.5 0.012 2.5E-07 66.9 4.1 149 1336-1512 2-163 (166)
201 TIGR01242 26Sp45 26S proteasom 95.5 0.024 5.1E-07 73.6 7.3 122 4-144 160-302 (364)
202 smart00350 MCM minichromosome 95.5 0.034 7.4E-07 75.1 9.0 91 1420-1516 301-404 (509)
203 PRK14957 DNA polymerase III su 95.5 0.028 6.1E-07 75.4 8.0 132 358-517 31-177 (546)
204 PRK06620 hypothetical protein; 95.4 0.045 9.7E-07 65.5 8.9 42 1469-1512 116-160 (214)
205 PRK13407 bchI magnesium chelat 95.4 0.027 5.9E-07 71.4 7.3 80 1421-1508 130-212 (334)
206 PRK10820 DNA-binding transcrip 95.4 0.058 1.3E-06 73.1 10.9 162 1309-1500 202-376 (520)
207 PRK07764 DNA polymerase III su 95.4 0.054 1.2E-06 76.1 10.9 152 358-532 30-190 (824)
208 PRK13341 recombination factor 95.4 0.027 5.9E-07 78.1 7.9 138 1327-1513 43-182 (725)
209 PRK14951 DNA polymerase III su 95.4 0.034 7.3E-07 75.6 8.5 135 355-517 28-182 (618)
210 PTZ00454 26S protease regulato 95.4 0.028 6.1E-07 73.2 7.4 61 4-64 183-250 (398)
211 PRK14964 DNA polymerase III su 95.4 0.033 7.2E-07 73.7 8.1 130 358-517 28-174 (491)
212 PRK06893 DNA replication initi 95.3 0.038 8.2E-07 66.9 8.0 119 6-145 45-171 (229)
213 PF00308 Bac_DnaA: Bacterial d 95.3 0.035 7.7E-07 66.6 7.6 78 1422-1513 100-180 (219)
214 CHL00195 ycf46 Ycf46; Provisio 95.3 0.047 1E-06 72.6 9.3 119 5-144 264-401 (489)
215 PRK14963 DNA polymerase III su 95.3 0.083 1.8E-06 70.9 11.5 125 363-517 34-174 (504)
216 PRK08727 hypothetical protein; 95.2 0.021 4.4E-07 69.4 5.1 77 1421-1512 95-175 (233)
217 TIGR01243 CDC48 AAA family ATP 95.2 0.035 7.5E-07 78.5 8.0 61 4-64 491-558 (733)
218 PF13401 AAA_22: AAA domain; P 95.2 0.013 2.7E-07 64.1 2.8 95 1333-1450 3-113 (131)
219 TIGR02928 orc1/cdc6 family rep 95.1 0.056 1.2E-06 70.1 9.2 44 6-49 46-99 (365)
220 PF09726 Macoilin: Transmembra 95.1 1.8 3.8E-05 60.2 23.5 37 2190-2227 545-581 (697)
221 PRK11637 AmiB activator; Provi 95.1 14 0.00031 49.3 31.4 17 2060-2076 16-32 (428)
222 PRK14949 DNA polymerase III su 95.1 0.24 5.1E-06 69.0 14.9 148 1337-1514 41-193 (944)
223 KOG0250|consensus 95.1 9.8 0.00021 53.8 29.6 17 1338-1354 66-82 (1074)
224 PF13173 AAA_14: AAA domain 95.0 0.018 3.9E-07 63.1 3.6 61 5-65 7-74 (128)
225 PRK00440 rfc replication facto 95.0 0.14 3E-06 65.1 12.2 115 367-517 40-160 (319)
226 PRK14530 adenylate kinase; Pro 95.0 0.031 6.7E-07 67.0 5.7 25 366-390 4-28 (215)
227 PRK12402 replication factor C 95.0 0.14 3E-06 65.7 12.1 127 367-518 38-184 (337)
228 PRK08118 topology modulation p 94.9 0.031 6.7E-07 64.3 5.3 63 368-456 4-66 (167)
229 PRK08084 DNA replication initi 94.9 0.059 1.3E-06 65.5 7.9 120 5-144 50-176 (235)
230 PRK09111 DNA polymerase III su 94.9 0.053 1.2E-06 73.9 8.3 134 354-517 35-190 (598)
231 PRK14970 DNA polymerase III su 94.9 0.13 2.8E-06 67.0 11.5 122 363-517 37-166 (367)
232 TIGR03420 DnaA_homol_Hda DnaA 94.9 0.052 1.1E-06 65.4 7.4 116 5-143 43-167 (226)
233 PRK14087 dnaA chromosomal repl 94.9 0.066 1.4E-06 71.1 8.8 79 1421-1513 208-289 (450)
234 CHL00206 ycf2 Ycf2; Provisiona 94.9 0.12 2.7E-06 75.4 11.7 224 1335-1621 1631-1906(2281)
235 TIGR02915 PEP_resp_reg putativ 94.8 0.13 2.8E-06 68.7 11.7 152 1320-1501 148-312 (445)
236 PRK14955 DNA polymerase III su 94.8 0.08 1.7E-06 69.4 9.4 142 360-517 33-185 (397)
237 PRK14964 DNA polymerase III su 94.8 0.072 1.6E-06 70.7 8.9 150 1335-1513 36-189 (491)
238 PRK08691 DNA polymerase III su 94.8 0.079 1.7E-06 72.1 9.3 135 362-516 35-176 (709)
239 PRK11388 DNA-binding transcrip 94.8 0.22 4.8E-06 69.6 14.1 178 1310-1513 324-511 (638)
240 KOG0250|consensus 94.7 32 0.00068 49.1 35.0 18 1809-1826 66-83 (1074)
241 TIGR00678 holB DNA polymerase 94.7 0.049 1.1E-06 63.8 6.3 147 355-532 4-166 (188)
242 PRK08058 DNA polymerase III su 94.7 0.099 2.2E-06 66.8 9.6 150 351-532 14-180 (329)
243 PRK05563 DNA polymerase III su 94.7 0.1 2.2E-06 71.1 10.0 126 362-517 35-177 (559)
244 COG1239 ChlI Mg-chelatase subu 94.7 0.3 6.5E-06 62.3 13.2 136 3-148 41-232 (423)
245 PRK06305 DNA polymerase III su 94.6 0.15 3.2E-06 67.8 11.2 133 363-517 37-179 (451)
246 TIGR00041 DTMP_kinase thymidyl 94.6 0.072 1.6E-06 62.7 7.4 48 367-422 5-52 (195)
247 PRK14532 adenylate kinase; Pro 94.6 0.059 1.3E-06 63.1 6.6 89 367-471 2-101 (188)
248 PRK14961 DNA polymerase III su 94.6 0.1 2.2E-06 67.6 9.3 117 5-145 43-188 (363)
249 PTZ00088 adenylate kinase 1; P 94.5 0.033 7.2E-07 67.2 4.4 23 368-390 9-31 (229)
250 PTZ00112 origin recognition co 94.5 0.082 1.8E-06 72.1 8.2 79 932-1025 870-950 (1164)
251 PRK09087 hypothetical protein; 94.5 0.05 1.1E-06 65.6 5.7 45 981-1025 120-167 (226)
252 PRK14952 DNA polymerase III su 94.4 0.11 2.4E-06 70.5 9.4 158 1327-1513 25-191 (584)
253 PRK07261 topology modulation p 94.4 0.085 1.9E-06 60.9 7.3 22 368-389 3-24 (171)
254 PRK07994 DNA polymerase III su 94.4 0.11 2.5E-06 70.8 9.5 148 1337-1513 41-192 (647)
255 PRK05642 DNA replication initi 94.4 0.048 1E-06 66.3 5.4 75 1422-1510 100-177 (234)
256 PRK14960 DNA polymerase III su 94.4 0.19 4.2E-06 67.9 11.3 128 360-517 32-176 (702)
257 PRK09112 DNA polymerase III su 94.4 0.14 3.1E-06 65.7 9.9 165 349-532 29-211 (351)
258 PRK10733 hflB ATP-dependent me 94.4 0.084 1.8E-06 73.2 8.3 122 4-144 189-331 (644)
259 COG3829 RocR Transcriptional r 94.4 0.19 4.1E-06 65.7 10.8 215 1309-1572 243-477 (560)
260 PRK06620 hypothetical protein; 94.3 0.095 2.1E-06 62.7 7.7 103 6-145 50-157 (214)
261 PRK14969 DNA polymerase III su 94.3 0.12 2.5E-06 70.1 9.2 140 361-517 34-177 (527)
262 PF05673 DUF815: Protein of un 94.3 0.03 6.6E-07 66.8 3.3 22 1335-1356 53-74 (249)
263 KOG0737|consensus 94.3 0.052 1.1E-06 67.4 5.3 86 1419-1514 186-276 (386)
264 COG2256 MGS1 ATPase related to 94.3 0.028 6E-07 70.4 3.0 95 897-1022 76-174 (436)
265 PRK00149 dnaA chromosomal repl 94.3 0.062 1.3E-06 71.7 6.6 79 934-1026 214-295 (450)
266 TIGR02397 dnaX_nterm DNA polym 94.2 0.11 2.4E-06 67.2 8.6 116 6-145 42-186 (355)
267 KOG0933|consensus 94.2 36 0.00078 47.8 36.4 90 2331-2420 736-829 (1174)
268 PTZ00111 DNA replication licen 94.2 0.064 1.4E-06 74.6 6.6 87 1421-1515 559-660 (915)
269 TIGR00368 Mg chelatase-related 94.2 0.085 1.8E-06 70.5 7.6 95 5-112 216-348 (499)
270 PRK11608 pspF phage shock prot 94.2 0.13 2.7E-06 65.8 8.8 122 6-138 35-180 (326)
271 PF13177 DNA_pol3_delta2: DNA 94.2 0.3 6.5E-06 55.9 11.0 146 349-517 3-160 (162)
272 PRK07133 DNA polymerase III su 94.2 0.15 3.2E-06 70.1 9.8 137 363-517 38-176 (725)
273 PRK07940 DNA polymerase III su 94.1 0.22 4.8E-06 64.8 11.0 138 364-531 35-186 (394)
274 COG1221 PspF Transcriptional r 94.1 0.087 1.9E-06 67.6 7.1 148 1323-1500 90-248 (403)
275 cd01131 PilT Pilus retraction 94.1 0.31 6.6E-06 57.8 11.3 84 367-461 3-87 (198)
276 PRK14956 DNA polymerase III su 94.1 0.12 2.7E-06 67.8 8.4 114 5-144 45-189 (484)
277 TIGR02903 spore_lon_C ATP-depe 94.0 0.24 5.1E-06 68.4 11.6 126 6-144 181-362 (615)
278 PRK08451 DNA polymerase III su 94.0 0.19 4.2E-06 67.3 10.3 126 363-518 34-176 (535)
279 PRK14953 DNA polymerase III su 94.0 0.73 1.6E-05 61.9 15.7 81 1412-1513 112-192 (486)
280 PRK08233 hypothetical protein; 94.0 0.069 1.5E-06 62.0 5.4 24 366-389 4-27 (182)
281 PRK14965 DNA polymerase III su 94.0 0.13 2.8E-06 70.4 8.8 134 363-517 36-177 (576)
282 PRK05896 DNA polymerase III su 94.0 0.099 2.2E-06 70.4 7.5 123 363-517 36-177 (605)
283 TIGR00602 rad24 checkpoint pro 93.9 0.13 2.8E-06 70.2 8.6 81 1417-1513 193-288 (637)
284 PRK06217 hypothetical protein; 93.9 0.059 1.3E-06 62.9 4.7 22 368-389 4-25 (183)
285 PRK14951 DNA polymerase III su 93.9 0.16 3.4E-06 69.4 9.4 117 5-145 43-193 (618)
286 PRK14963 DNA polymerase III su 93.9 0.19 4.1E-06 67.5 10.1 117 5-145 41-185 (504)
287 PRK08699 DNA polymerase III su 93.8 0.13 2.9E-06 65.3 8.0 144 363-532 19-183 (325)
288 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.06 1.3E-06 62.7 4.6 22 368-389 2-23 (183)
289 COG5185 HEC1 Protein involved 93.8 27 0.00058 44.9 33.2 66 2078-2143 298-367 (622)
290 PF07888 CALCOCO1: Calcium bin 93.8 34 0.00074 46.0 36.5 91 2339-2432 367-457 (546)
291 COG2204 AtoC Response regulato 93.8 0.38 8.2E-06 63.0 12.0 172 1311-1514 141-331 (464)
292 PRK12422 chromosomal replicati 93.8 0.065 1.4E-06 70.9 5.3 79 932-1024 203-284 (445)
293 PRK12323 DNA polymerase III su 93.8 0.098 2.1E-06 70.4 6.8 135 355-517 28-182 (700)
294 KOG4360|consensus 93.8 1.7 3.7E-05 55.7 16.9 50 2094-2143 200-249 (596)
295 PF12780 AAA_8: P-loop contain 93.7 0.3 6.5E-06 60.3 10.5 150 344-517 9-196 (268)
296 PRK14088 dnaA chromosomal repl 93.7 0.035 7.5E-07 73.5 2.6 77 934-1025 197-277 (440)
297 PRK14958 DNA polymerase III su 93.7 0.18 4E-06 67.8 9.3 116 5-144 43-187 (509)
298 PRK07399 DNA polymerase III su 93.7 0.29 6.3E-06 62.0 10.6 168 350-532 11-193 (314)
299 TIGR03574 selen_PSTK L-seryl-t 93.7 0.043 9.2E-07 67.4 3.1 23 368-390 2-24 (249)
300 COG4942 Membrane-bound metallo 93.6 27 0.00057 45.5 27.3 65 2334-2398 176-244 (420)
301 PRK14952 DNA polymerase III su 93.6 0.27 5.8E-06 66.9 10.7 134 361-517 31-176 (584)
302 PRK06647 DNA polymerase III su 93.6 0.12 2.5E-06 70.4 7.3 135 363-517 36-177 (563)
303 PRK00279 adk adenylate kinase; 93.6 0.15 3.2E-06 61.3 7.4 23 368-390 3-25 (215)
304 PLN02842 nucleotide kinase 93.6 0.098 2.1E-06 69.1 6.3 21 369-389 1-21 (505)
305 PF13173 AAA_14: AAA domain 93.6 0.094 2E-06 57.5 5.3 123 1333-1502 1-125 (128)
306 PRK14950 DNA polymerase III su 93.6 0.26 5.6E-06 67.9 10.6 126 362-517 35-178 (585)
307 PF13401 AAA_22: AAA domain; P 93.6 0.049 1.1E-06 59.5 3.1 69 4-72 8-108 (131)
308 PRK08116 hypothetical protein; 93.5 0.082 1.8E-06 65.5 5.1 114 5-138 119-252 (268)
309 KOG0976|consensus 93.5 41 0.00088 45.7 31.5 52 2085-2139 109-160 (1265)
310 PF13207 AAA_17: AAA domain; P 93.5 0.058 1.2E-06 58.2 3.3 22 368-389 2-23 (121)
311 PRK06762 hypothetical protein; 93.4 0.052 1.1E-06 62.2 3.1 86 366-469 3-89 (166)
312 KOG0740|consensus 93.4 0.11 2.3E-06 67.0 6.1 139 1335-1515 187-336 (428)
313 KOG0980|consensus 93.4 15 0.00033 50.6 25.4 222 2096-2436 324-545 (980)
314 KOG4809|consensus 93.4 25 0.00055 46.0 26.1 48 2338-2385 516-563 (654)
315 PRK05564 DNA polymerase III su 93.4 0.31 6.8E-06 62.0 10.3 148 350-532 11-163 (313)
316 PRK07764 DNA polymerase III su 93.4 3.4 7.3E-05 58.8 21.0 38 1794-1831 26-63 (824)
317 TIGR02880 cbbX_cfxQ probable R 93.4 0.068 1.5E-06 66.8 4.2 58 5-64 63-133 (284)
318 PRK08181 transposase; Validate 93.3 0.046 1E-06 67.4 2.6 34 1320-1353 92-125 (269)
319 PRK14954 DNA polymerase III su 93.3 0.17 3.7E-06 69.2 8.1 130 362-517 35-185 (620)
320 KOG0964|consensus 93.3 51 0.0011 46.3 35.2 48 2094-2141 395-446 (1200)
321 PRK13341 recombination factor 93.2 0.2 4.3E-06 69.8 8.6 114 6-145 58-178 (725)
322 PRK04863 mukB cell division pr 93.2 80 0.0017 48.3 37.0 18 1336-1353 29-46 (1486)
323 PRK05563 DNA polymerase III su 93.1 0.29 6.2E-06 66.8 9.9 116 6-145 44-188 (559)
324 PRK10078 ribose 1,5-bisphospho 93.1 0.054 1.2E-06 63.4 2.6 97 367-485 4-100 (186)
325 PRK14949 DNA polymerase III su 93.1 0.49 1.1E-05 66.0 11.8 135 363-517 36-177 (944)
326 PRK14526 adenylate kinase; Pro 93.1 0.26 5.6E-06 58.9 8.2 97 368-471 3-101 (211)
327 TIGR02397 dnaX_nterm DNA polym 93.1 0.19 4.1E-06 65.0 7.8 126 364-517 35-175 (355)
328 PRK06526 transposase; Provisio 93.1 0.04 8.6E-07 67.6 1.4 25 1329-1353 93-117 (254)
329 PRK14087 dnaA chromosomal repl 93.0 0.098 2.1E-06 69.5 5.0 78 934-1025 209-289 (450)
330 PRK14086 dnaA chromosomal repl 93.0 0.074 1.6E-06 71.7 3.8 78 1421-1512 379-459 (617)
331 COG1116 TauB ABC-type nitrate/ 92.9 0.061 1.3E-06 64.2 2.7 22 367-388 31-52 (248)
332 PF00308 Bac_DnaA: Bacterial d 92.9 0.19 4.1E-06 60.5 6.9 42 760-801 9-54 (219)
333 PRK07994 DNA polymerase III su 92.9 0.34 7.4E-06 66.3 10.0 131 359-517 32-177 (647)
334 TIGR02031 BchD-ChlD magnesium 92.9 0.18 4E-06 69.1 7.6 68 1421-1494 86-154 (589)
335 PRK14948 DNA polymerase III su 92.9 0.51 1.1E-05 65.0 11.8 129 359-517 32-179 (620)
336 PRK14529 adenylate kinase; Pro 92.9 0.21 4.5E-06 60.0 7.1 96 368-472 3-101 (223)
337 PF04665 Pox_A32: Poxvirus A32 92.8 0.32 7E-06 58.8 8.5 28 1328-1355 7-34 (241)
338 KOG0933|consensus 92.8 60 0.0013 45.8 30.0 75 2322-2396 808-882 (1174)
339 KOG4674|consensus 92.8 80 0.0017 48.0 33.0 69 2071-2139 961-1037(1822)
340 COG1579 Zn-ribbon protein, pos 92.7 1.1 2.4E-05 53.7 12.7 105 2327-2434 11-117 (239)
341 PTZ00361 26 proteosome regulat 92.7 0.21 4.6E-06 65.7 7.4 121 4-144 221-363 (438)
342 TIGR02974 phageshock_pspF psp 92.7 0.31 6.7E-06 62.3 8.8 123 6-138 28-173 (329)
343 PRK14971 DNA polymerase III su 92.7 0.34 7.4E-06 66.7 9.7 128 363-517 37-179 (614)
344 PRK08451 DNA polymerase III su 92.7 0.39 8.4E-06 64.5 9.8 159 1327-1513 26-190 (535)
345 PRK07940 DNA polymerase III su 92.6 0.36 7.7E-06 63.0 9.3 117 5-145 41-186 (394)
346 KOG0995|consensus 92.6 48 0.001 44.3 35.2 27 2192-2218 341-367 (581)
347 PRK05642 DNA replication initi 92.6 0.26 5.6E-06 59.9 7.5 118 6-145 51-176 (234)
348 COG0470 HolB ATPase involved i 92.6 0.27 5.9E-06 62.6 8.1 129 363-517 22-167 (325)
349 TIGR00064 ftsY signal recognit 92.6 0.73 1.6E-05 57.3 11.5 39 365-410 72-110 (272)
350 PRK08727 hypothetical protein; 92.6 0.36 7.8E-06 58.7 8.7 121 5-145 46-172 (233)
351 PF10174 Cast: RIM-binding pro 92.5 66 0.0014 45.7 31.5 91 2338-2428 289-386 (775)
352 PF05673 DUF815: Protein of un 92.5 0.099 2.1E-06 62.6 3.7 24 780-803 51-74 (249)
353 COG1474 CDC6 Cdc6-related prot 92.4 0.18 4E-06 65.0 6.2 124 2-144 39-199 (366)
354 TIGR01817 nifA Nif-specific re 92.4 0.49 1.1E-05 64.8 10.7 70 6-77 225-315 (534)
355 TIGR00362 DnaA chromosomal rep 92.4 0.19 4.1E-06 66.3 6.5 122 6-145 142-278 (405)
356 PRK14959 DNA polymerase III su 92.4 0.41 9E-06 65.0 9.6 115 6-144 44-187 (624)
357 PF05729 NACHT: NACHT domain 92.3 0.19 4E-06 57.0 5.6 25 367-391 2-26 (166)
358 COG1126 GlnQ ABC-type polar am 92.3 0.083 1.8E-06 61.5 2.6 23 365-387 28-50 (240)
359 KOG0977|consensus 92.3 28 0.00062 46.7 25.6 25 2204-2228 207-231 (546)
360 PRK14957 DNA polymerase III su 92.3 0.39 8.5E-06 64.8 9.2 37 104-145 152-188 (546)
361 KOG0612|consensus 92.3 77 0.0017 45.8 31.1 23 2437-2459 828-850 (1317)
362 PRK12377 putative replication 92.3 0.17 3.8E-06 61.7 5.4 27 1327-1353 94-120 (248)
363 PLN02459 probable adenylate ki 92.3 0.27 5.9E-06 60.1 7.0 91 368-469 32-130 (261)
364 PRK09087 hypothetical protein; 92.2 0.35 7.5E-06 58.5 7.9 110 5-145 49-163 (226)
365 TIGR01818 ntrC nitrogen regula 92.2 0.77 1.7E-05 61.7 12.1 205 1321-1572 144-365 (463)
366 PRK08769 DNA polymerase III su 92.2 0.62 1.3E-05 59.0 10.3 153 353-532 14-183 (319)
367 KOG0996|consensus 92.2 77 0.0017 45.6 33.7 24 1808-1831 111-134 (1293)
368 TIGR00678 holB DNA polymerase 92.2 0.53 1.1E-05 55.2 9.2 115 6-144 20-164 (188)
369 COG3839 MalK ABC-type sugar tr 92.2 0.085 1.8E-06 66.5 2.7 21 368-388 32-52 (338)
370 PRK11637 AmiB activator; Provi 92.1 2.2 4.8E-05 56.7 16.0 126 2334-2463 45-177 (428)
371 PRK07471 DNA polymerase III su 92.1 0.45 9.8E-06 61.5 9.3 156 353-532 29-211 (365)
372 COG3842 PotA ABC-type spermidi 92.1 0.072 1.6E-06 67.4 2.0 26 363-388 27-54 (352)
373 PRK11361 acetoacetate metaboli 92.0 0.58 1.3E-05 62.7 10.6 155 1317-1501 149-316 (457)
374 PRK05896 DNA polymerase III su 92.0 0.49 1.1E-05 64.1 9.5 29 117-145 160-188 (605)
375 PF13555 AAA_29: P-loop contai 92.0 0.13 2.9E-06 48.7 3.1 24 367-390 25-48 (62)
376 PF13671 AAA_33: AAA domain; P 91.9 0.098 2.1E-06 58.1 2.6 22 368-389 2-23 (143)
377 PRK15115 response regulator Gl 91.9 0.6 1.3E-05 62.4 10.5 228 1312-1584 135-377 (444)
378 PRK14527 adenylate kinase; Pro 91.9 0.19 4.1E-06 59.1 5.0 23 367-389 8-30 (191)
379 PRK06090 DNA polymerase III su 91.8 1.5 3.2E-05 55.7 13.0 151 352-532 12-178 (319)
380 KOG2028|consensus 91.8 0.14 3.1E-06 62.7 3.9 95 897-1021 193-291 (554)
381 PF12718 Tropomyosin_1: Tropom 91.8 2.9 6.4E-05 46.8 13.8 95 2337-2431 43-140 (143)
382 PRK14970 DNA polymerase III su 91.7 0.66 1.4E-05 60.4 10.3 114 6-145 45-177 (367)
383 PRK14953 DNA polymerase III su 91.7 0.43 9.3E-06 64.0 8.6 136 363-517 36-177 (486)
384 PF00910 RNA_helicase: RNA hel 91.7 0.1 2.2E-06 55.4 2.3 62 5-67 3-64 (107)
385 PRK14950 DNA polymerase III su 91.6 0.55 1.2E-05 64.7 9.8 159 1327-1513 28-193 (585)
386 PRK05703 flhF flagellar biosyn 91.6 0.44 9.6E-06 62.8 8.5 97 365-471 221-326 (424)
387 KOG0995|consensus 91.6 62 0.0013 43.3 36.8 63 2078-2140 262-328 (581)
388 PHA02562 46 endonuclease subun 91.6 58 0.0013 45.1 29.6 23 1807-1829 29-51 (562)
389 PF00493 MCM: MCM2/3/5 family 91.6 0.049 1.1E-06 69.5 -0.3 154 1332-1515 55-224 (331)
390 PF00158 Sigma54_activat: Sigm 91.5 0.51 1.1E-05 54.4 7.9 71 6-77 28-118 (168)
391 PF13245 AAA_19: Part of AAA d 91.5 0.17 3.8E-06 50.2 3.6 29 6-34 16-51 (76)
392 TIGR02680 conserved hypothetic 91.5 37 0.00081 51.7 29.1 62 2319-2380 858-919 (1353)
393 cd01672 TMPK Thymidine monopho 91.5 0.76 1.6E-05 53.9 9.6 23 368-390 3-25 (200)
394 KOG0018|consensus 91.4 51 0.0011 46.9 27.1 87 2039-2127 740-828 (1141)
395 PRK06964 DNA polymerase III su 91.4 0.21 4.5E-06 63.7 4.9 163 353-532 11-202 (342)
396 COG1136 SalX ABC-type antimicr 91.3 0.12 2.6E-06 61.5 2.6 22 367-388 33-54 (226)
397 cd03115 SRP The signal recogni 91.3 0.42 9.1E-06 55.2 7.0 94 368-471 3-109 (173)
398 KOG0738|consensus 91.3 0.056 1.2E-06 67.0 -0.3 134 1335-1512 246-395 (491)
399 TIGR02030 BchI-ChlI magnesium 91.2 0.73 1.6E-05 58.9 9.6 138 365-513 25-199 (337)
400 PRK10884 SH3 domain-containing 91.2 1.1 2.4E-05 53.1 10.3 84 2323-2411 78-165 (206)
401 KOG0652|consensus 91.2 0.099 2.1E-06 61.2 1.7 78 927-1021 260-352 (424)
402 KOG0729|consensus 91.2 0.061 1.3E-06 63.0 0.0 131 1335-1508 212-357 (435)
403 TIGR02903 spore_lon_C ATP-depe 91.2 1.3 2.8E-05 61.4 12.6 142 366-517 176-352 (615)
404 PRK14969 DNA polymerase III su 91.1 0.68 1.5E-05 62.9 9.7 38 103-145 151-188 (527)
405 TIGR01351 adk adenylate kinase 91.1 0.45 9.8E-06 56.9 7.2 22 368-389 2-23 (210)
406 PRK14086 dnaA chromosomal repl 91.1 0.46 1E-05 64.3 7.9 76 933-1022 379-457 (617)
407 COG0465 HflB ATP-dependent Zn 91.0 0.24 5.2E-06 66.4 5.2 94 1420-1525 243-342 (596)
408 PRK09183 transposase/IS protei 91.0 0.084 1.8E-06 65.1 0.9 24 1330-1353 98-121 (259)
409 COG0563 Adk Adenylate kinase a 91.0 0.18 3.8E-06 58.6 3.5 95 367-472 2-102 (178)
410 KOG1051|consensus 90.9 0.14 3E-06 71.2 3.0 160 1326-1514 199-365 (898)
411 cd00820 PEPCK_HprK Phosphoenol 90.9 0.17 3.6E-06 53.5 2.9 22 365-386 15-36 (107)
412 cd02020 CMPK Cytidine monophos 90.9 0.71 1.5E-05 51.4 8.2 27 5-31 4-30 (147)
413 COG4525 TauB ABC-type taurine 90.9 0.15 3.2E-06 58.2 2.6 23 366-388 32-54 (259)
414 PRK06305 DNA polymerase III su 90.9 0.67 1.5E-05 61.7 9.2 29 117-145 162-190 (451)
415 PF09726 Macoilin: Transmembra 90.9 76 0.0016 44.8 28.8 66 2359-2431 589-654 (697)
416 cd02019 NK Nucleoside/nucleoti 90.9 0.2 4.3E-06 48.7 3.2 22 368-389 2-23 (69)
417 PF01580 FtsK_SpoIIIE: FtsK/Sp 90.9 0.35 7.7E-06 57.5 6.0 47 367-418 40-86 (205)
418 PRK05707 DNA polymerase III su 90.9 0.4 8.6E-06 61.1 6.8 141 362-532 19-176 (328)
419 PF13238 AAA_18: AAA domain; P 90.8 0.19 4E-06 54.5 3.3 22 368-389 1-22 (129)
420 PF03215 Rad17: Rad17 cell cyc 90.8 0.26 5.6E-06 66.2 5.2 23 367-389 47-69 (519)
421 PRK14965 DNA polymerase III su 90.8 0.69 1.5E-05 63.5 9.4 38 103-145 151-188 (576)
422 COG0466 Lon ATP-dependent Lon 90.7 0.22 4.8E-06 66.6 4.4 63 4-66 354-431 (782)
423 COG4942 Membrane-bound metallo 90.7 3.7 7.9E-05 53.0 14.8 115 2343-2457 38-163 (420)
424 PRK01184 hypothetical protein; 90.6 0.25 5.5E-06 57.6 4.4 23 449-471 80-102 (184)
425 COG0283 Cmk Cytidylate kinase 90.6 0.24 5.3E-06 57.9 4.1 24 5-28 9-32 (222)
426 PRK07133 DNA polymerase III su 90.6 0.8 1.7E-05 63.3 9.6 38 103-145 150-187 (725)
427 PF14532 Sigma54_activ_2: Sigm 90.5 0.29 6.3E-06 54.4 4.5 33 1321-1353 8-40 (138)
428 smart00763 AAA_PrkA PrkA AAA d 90.5 0.38 8.2E-06 61.2 6.0 29 364-392 77-105 (361)
429 PF06008 Laminin_I: Laminin Do 90.5 55 0.0012 40.7 27.9 243 2073-2413 19-262 (264)
430 PRK09183 transposase/IS protei 90.4 0.46 1E-05 58.7 6.6 62 5-66 107-178 (259)
431 PRK04132 replication factor C 90.4 1 2.3E-05 63.4 10.6 114 8-145 574-699 (846)
432 PF10662 PduV-EutP: Ethanolami 90.4 0.17 3.8E-06 56.1 2.5 21 367-387 3-23 (143)
433 TIGR02524 dot_icm_DotB Dot/Icm 90.4 0.84 1.8E-05 58.9 9.1 25 366-390 135-159 (358)
434 PRK14959 DNA polymerase III su 90.3 1.1 2.3E-05 61.3 10.3 125 363-517 36-177 (624)
435 PRK09111 DNA polymerase III su 90.1 0.88 1.9E-05 62.4 9.5 150 1336-1513 48-205 (598)
436 PRK06871 DNA polymerase III su 90.1 0.61 1.3E-05 59.2 7.4 150 352-532 11-177 (325)
437 PF07111 HCR: Alpha helical co 90.1 91 0.002 42.7 30.8 99 2338-2436 530-655 (739)
438 PRK13695 putative NTPase; Prov 90.1 1.1 2.4E-05 51.8 9.1 37 446-482 94-135 (174)
439 TIGR00382 clpX endopeptidase C 90.1 0.87 1.9E-05 59.5 9.0 25 365-389 116-140 (413)
440 PF13207 AAA_17: AAA domain; P 90.0 0.22 4.7E-06 53.7 2.9 29 5-35 4-32 (121)
441 TIGR02322 phosphon_PhnN phosph 89.9 0.21 4.6E-06 58.0 2.9 23 367-389 3-25 (179)
442 PRK12726 flagellar biosynthesi 89.8 0.7 1.5E-05 59.1 7.5 97 364-472 205-313 (407)
443 COG2607 Predicted ATPase (AAA+ 89.8 0.21 4.5E-06 58.9 2.6 22 1335-1356 86-107 (287)
444 KOG1533|consensus 89.8 0.32 6.9E-06 57.0 4.1 40 365-411 2-41 (290)
445 PRK14948 DNA polymerase III su 89.8 1.3 2.8E-05 61.2 10.7 22 5-26 43-64 (620)
446 KOG0971|consensus 89.7 1.1E+02 0.0023 42.9 29.5 34 2492-2525 554-588 (1243)
447 KOG0989|consensus 89.7 0.18 3.8E-06 61.5 2.1 68 6-73 63-150 (346)
448 PRK12724 flagellar biosynthesi 89.7 2.4 5.3E-05 55.2 12.3 106 365-481 223-343 (432)
449 KOG0991|consensus 89.7 0.24 5.2E-06 57.7 3.0 23 367-389 50-72 (333)
450 PRK11361 acetoacetate metaboli 89.6 0.76 1.6E-05 61.7 8.2 123 5-138 171-317 (457)
451 PRK14955 DNA polymerase III su 89.5 1 2.2E-05 59.3 9.0 21 6-26 44-64 (397)
452 TIGR01420 pilT_fam pilus retra 89.5 2.4 5.1E-05 54.7 12.2 28 362-389 118-146 (343)
453 TIGR01360 aden_kin_iso1 adenyl 89.5 0.25 5.5E-06 57.6 3.2 24 366-389 4-27 (188)
454 KOG2004|consensus 89.5 0.94 2E-05 60.6 8.4 198 1333-1578 437-649 (906)
455 KOG0962|consensus 89.4 1.4E+02 0.0031 44.0 31.4 284 2064-2404 784-1074(1294)
456 PRK03839 putative kinase; Prov 89.4 0.26 5.6E-06 57.4 3.2 23 368-390 3-25 (180)
457 COG0497 RecN ATPase involved i 89.3 99 0.0022 42.1 28.4 59 2064-2122 136-194 (557)
458 PRK13833 conjugal transfer pro 89.3 0.33 7.2E-06 61.4 4.2 32 358-389 137-168 (323)
459 COG0466 Lon ATP-dependent Lon 89.3 0.84 1.8E-05 61.4 7.9 146 1407-1572 394-555 (782)
460 cd00071 GMPK Guanosine monopho 89.3 0.25 5.4E-06 54.9 2.8 22 368-389 2-23 (137)
461 TIGR03015 pepcterm_ATPase puta 89.3 1.2 2.7E-05 55.1 9.3 28 362-389 39-67 (269)
462 KOG1534|consensus 89.2 0.39 8.5E-06 55.3 4.2 44 364-414 2-45 (273)
463 cd01129 PulE-GspE PulE/GspE Th 89.2 0.37 8E-06 59.7 4.5 32 358-389 72-104 (264)
464 KOG1547|consensus 89.2 0.5 1.1E-05 55.2 5.0 43 328-389 28-70 (336)
465 TIGR02782 TrbB_P P-type conjug 89.0 0.36 7.7E-06 60.8 4.2 32 358-389 125-156 (299)
466 PRK10365 transcriptional regul 89.0 0.9 1.9E-05 60.7 8.3 228 1312-1584 140-382 (441)
467 cd01130 VirB11-like_ATPase Typ 89.0 0.33 7.1E-06 56.9 3.6 29 361-389 21-49 (186)
468 KOG2227|consensus 88.9 0.95 2.1E-05 58.2 7.7 144 1333-1513 174-339 (529)
469 PRK14528 adenylate kinase; Pro 88.9 0.92 2E-05 53.2 7.2 22 368-389 4-25 (186)
470 PRK12377 putative replication 88.9 0.43 9.2E-06 58.4 4.6 69 5-74 106-187 (248)
471 COG1484 DnaC DNA replication p 88.9 0.21 4.5E-06 61.4 1.9 89 1329-1440 100-188 (254)
472 TIGR01313 therm_gnt_kin carboh 88.8 0.24 5.1E-06 56.6 2.3 22 368-389 1-22 (163)
473 PF01695 IstB_IS21: IstB-like 88.8 0.038 8.3E-07 64.2 -4.2 26 1328-1353 41-66 (178)
474 cd00464 SK Shikimate kinase (S 88.8 0.31 6.8E-06 54.8 3.2 22 368-389 2-23 (154)
475 PRK05917 DNA polymerase III su 88.8 2.3 5E-05 53.0 10.8 143 352-517 6-153 (290)
476 PRK12727 flagellar biosynthesi 88.7 1.7 3.7E-05 57.9 10.1 106 365-480 350-467 (559)
477 PRK08939 primosomal protein Dn 88.7 0.38 8.2E-06 60.7 4.1 21 1333-1353 155-175 (306)
478 COG1117 PstB ABC-type phosphat 88.7 0.31 6.8E-06 56.7 3.0 24 365-388 33-56 (253)
479 cd01120 RecA-like_NTPases RecA 88.6 1 2.2E-05 50.6 7.3 34 5-38 4-40 (165)
480 COG2805 PilT Tfp pilus assembl 88.6 0.5 1.1E-05 57.6 4.7 30 361-390 120-150 (353)
481 PRK14738 gmk guanylate kinase; 88.5 0.2 4.3E-06 59.7 1.4 30 359-388 7-36 (206)
482 cd02024 NRK1 Nicotinamide ribo 88.5 0.67 1.5E-05 54.2 5.7 95 368-471 2-132 (187)
483 PHA02774 E1; Provisional 88.4 3 6.6E-05 55.9 12.0 125 365-533 434-584 (613)
484 PF13238 AAA_18: AAA domain; P 88.3 1.1 2.3E-05 48.6 6.9 76 6-95 4-81 (129)
485 PRK10869 recombination and rep 88.3 60 0.0013 44.8 24.8 20 1808-1827 25-44 (553)
486 PRK10536 hypothetical protein; 88.3 0.81 1.8E-05 55.7 6.3 49 365-422 74-123 (262)
487 cd01428 ADK Adenylate kinase ( 88.3 0.93 2E-05 53.2 6.8 22 368-389 2-23 (194)
488 PF13245 AAA_19: Part of AAA d 88.2 0.5 1.1E-05 47.0 3.8 24 366-389 10-35 (76)
489 PRK05022 anaerobic nitric oxid 88.2 1.2 2.6E-05 60.5 8.7 123 5-138 215-361 (509)
490 PF14532 Sigma54_activ_2: Sigm 88.2 0.22 4.8E-06 55.3 1.5 66 6-78 27-95 (138)
491 PRK00091 miaA tRNA delta(2)-is 88.2 0.32 7E-06 61.2 3.0 24 366-389 5-28 (307)
492 COG1222 RPT1 ATP-dependent 26S 88.2 0.77 1.7E-05 57.3 6.0 57 325-387 146-207 (406)
493 PRK13851 type IV secretion sys 88.1 0.22 4.9E-06 63.5 1.6 37 769-805 150-186 (344)
494 PRK13973 thymidylate kinase; P 88.1 1.3 2.9E-05 53.0 8.1 23 368-390 6-28 (213)
495 PF00261 Tropomyosin: Tropomyo 88.0 74 0.0016 39.0 27.4 28 2405-2432 203-230 (237)
496 PF00406 ADK: Adenylate kinase 88.0 0.35 7.7E-06 54.5 2.9 88 370-471 1-97 (151)
497 PF03215 Rad17: Rad17 cell cyc 87.9 0.35 7.6E-06 65.0 3.3 31 6-36 51-81 (519)
498 PLN02674 adenylate kinase 87.9 1.4 3.1E-05 53.6 8.1 101 366-472 32-133 (244)
499 PRK00131 aroK shikimate kinase 87.9 0.36 7.7E-06 55.5 2.9 25 365-389 4-28 (175)
500 PRK09518 bifunctional cytidyla 87.9 0.7 1.5E-05 65.3 6.4 26 4-29 5-30 (712)
No 1
>KOG3595|consensus
Probab=100.00 E-value=5.3e-138 Score=1474.19 Aligned_cols=1069 Identities=41% Similarity=0.653 Sum_probs=947.1
Q ss_pred HHHHHHHHHhcCCCccccccccceEEEEecchhhhhhhccCCCCCCchhhhhhhhceeecCCCccccccccCCCCCCCCC
Q psy12680 1227 QINKIVEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVSVPVSDENDFQWLCQLRYYAEGKGRWKPWSDDLASAPAIPR 1306 (2567)
Q Consensus 1227 ~l~~l~~~~~~~l~~~~r~~~~~li~~~vh~rdi~~~l~~~~~~~~~~f~w~~qlryy~~~~~~w~~w~~~~~~~~~~~~ 1306 (2567)
.+..++|.+.+.+....|.++..++... .. .....|.....++|.+|.+.++ .. ..+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 101 (1395)
T KOG3595|consen 45 FLFALIWALGGDLDADSREKFREFLRRL----------IN-----------IIDLYYIDEEIGDWEPWIDKVP-FE-LLE 101 (1395)
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHH----------Hh-----------hhhheeeeeccccccchhhhCc-cc-ccc
Confidence 4456778888888888888776432110 00 1112344456679999999998 43 233
Q ss_pred CCCCcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceee
Q psy12680 1307 DMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIM 1386 (2567)
Q Consensus 1307 ~~~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~l 1386 (2567)
+.. +++|||.||+|+.+++..++..++|+++|||+|||||+++... +.+..+.+.+. +
T Consensus 102 ~~~--~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~-----------------~~~~~~~~~~~---~ 159 (1395)
T KOG3595|consen 102 DHE--DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSE-----------------LRSLQDREVYL---L 159 (1395)
T ss_pred ccc--ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHH-----------------HHhcccchheE---E
Confidence 333 9999999999999999999999999999999999999988532 22222222233 9
Q ss_pred ccccccCHHHHHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeee
Q psy12680 1387 NFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLI 1466 (2567)
Q Consensus 1387 nfSa~Tts~~~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~ 1466 (2567)
|||++|+++.+|.+++++++|++++.||||.+|++++||||+|||..|.||+|+|+++|||++|++||||+.+..|+.|.
T Consensus 160 ~fs~~ts~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddinmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~ 239 (1395)
T KOG3595|consen 160 NFSSVTSSELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDINMPALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIE 239 (1395)
T ss_pred eeeeeccHHHHHHHHHHHHHHhcccCCCCCCCceeEEEEeccCCchhhhcCCccHHHHHHHHHHhceeecccccceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred eeeeeeecCCCCCC-CCCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHHHHHHHHHHHHHHh
Q psy12680 1467 EIQLMCAMGPPSTG-NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIFKESLL 1545 (2567)
Q Consensus 1467 diq~v~am~Ppggg-~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~ati~ly~~v~~ 1545 (2567)
|+++++||+||+|| +++++||+|||.++++++|+.+++.+||+.|+.+|+. |...+...+..++++++.+|..+..
T Consensus 240 ~i~~~~a~~~~~~gr~~i~~r~~r~f~~~~~~~~~~~sl~~if~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~ 316 (1395)
T KOG3595|consen 240 NVQLVGAMNPPGGGRNDITERFLRHFLIVSLNYPSQESLTQIFNTILTGHLR---FAPAFRTSIEPIVNASVDFYPKVQE 316 (1395)
T ss_pred eeEEEeecCCCCCccCcccHHHHHHeeeEeeCCCChhhHHHHHHHHHhcccC---ccHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999998888 8999999999999999999999999999999999986 7777777799999999999999999
Q ss_pred hcCCCCCCcccccCchhHHHHHHHHhccchHHHhcHHHHHHHhhhhhhhhhcccccCchhHHHHHHHHHHHHHHHHHHHH
Q psy12680 1546 NLLPTPTKSHYLFNLRDFARVIQGVLLSVPEAIESLLSMKRLWVHEVLRVYYDRLVDSDDRLWLFNTLKYTVEKFLQEDM 1625 (2567)
Q Consensus 1546 ~~lPTp~k~HY~FnlRDlsrv~qGll~~~~~~i~~~~~l~rLw~HE~~RVF~DRLv~~~D~~~f~~~L~~~~~~~~~~~~ 1625 (2567)
+++|||.++||+|||||++||++|++.+.+....+...++|+|+||+.|||.|||++.+|+.|+.+.+...+.+.|...-
T Consensus 317 ~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~~~~~l~~~~~~e~~rv~~drlv~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1395)
T KOG3595|consen 317 NFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALLTLEDLIRLWVHEAIRVFADRLVDDEDRQWFDKKLQEVLLKLFEADS 396 (1395)
T ss_pred hcCCCCCcceeeechhhhhhheeehcccCcHhhccHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887775432
Q ss_pred HHHHHhhhhcCCCCCcccccccccccccCCCCCcCccCccccCCHHHHHHHHHHHHHHHhccCCCCcccccccccccCCc
Q psy12680 1626 NQLFANLKEANSTEPVGEYELRNLIYCDFANPKADQRNYMEVTNLEDLRTIVERYLTEFNNMSKKPMNLVLFRGFSKEFD 1705 (2567)
Q Consensus 1626 ~~~~~~~~~~~~~~~~~~~~~~~llf~~f~~~~~~~~~Y~~v~d~~~l~~~l~~~l~~yN~~~~~~m~LVlF~~~~~~~~ 1705 (2567)
...+++|+++..... +.|+++.+++.+...+..++..||......|++|+|.
T Consensus 397 -------------------~~~~~~~~~~~~~~~--~~y~~~~~~~~l~~~~~~~l~~~~~~~~~~~~lvlf~------- 448 (1395)
T KOG3595|consen 397 -------------------LQMPLLYGDFRSESH--KIYEEVLSVELLRGVLEAYLKQFNIEEIRPMHLVLFR------- 448 (1395)
T ss_pred -------------------hcCCceeeecccccc--cccCchHhHHHHHHHHHHHHHHHhhhccCCCceeeeH-------
Confidence 235789999988766 8999999999999999999999995566789999996
Q ss_pred hhHHHHHHhHhHHHHhhhhccCCCCCcccccccchhhHHHHhhhhccccCCCCCCCCCCCccchHHHHHHHHHHHHHhCC
Q psy12680 1706 PCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQYLTVTGRVGPGPPENSFSKTDYTILNKAVREVCEKANL 1785 (2567)
Q Consensus 1706 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~h~~f~lr~~~~vl~~~~~~~rv~~~~~~~~~~~~d~~~l~~al~~~~~~~~l 1785 (2567)
.+..|+.++.|+..+|
T Consensus 449 --------------------------------------~~~~h~~ri~ril~~~-------------------------- 464 (1395)
T KOG3595|consen 449 --------------------------------------DAIEHVLRIDRILRQP-------------------------- 464 (1395)
T ss_pred --------------------------------------HHhhhhhhhHHHhcCC--------------------------
Confidence 2234444555555555
Q ss_pred ccchHHHHHHHHHHHhhhccccEEEEcCCCCChHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccccccccccccccc
Q psy12680 1786 QVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAV 1865 (2567)
Q Consensus 1786 ~~~p~~~~ki~ql~~~~~~r~~~lLVG~~GSGK~sl~rlla~~l~~~~~~~~~~~~~v~~~~inpk~is~~~~Yg~~~~~ 1865 (2567)
+||++|||++||||+|++|+++++.++ ..+++...+.|+
T Consensus 465 -------------------~g~~llvgv~g~gkqsl~r~~~~~~~~-----------------~~fq~~~~~~y~----- 503 (1395)
T KOG3595|consen 465 -------------------RGHALLVGVGGSGKQSLTRLAAFINGL-----------------SVFQIEITRSYN----- 503 (1395)
T ss_pred -------------------CccEEEeecCCCCcccHHHHHHhhccc-----------------cceeeeccccCc-----
Confidence 667899999999999999999976542 445666666663
Q ss_pred ccccccchhHHHHHHHhhhcccCCeEEeecCCcchHHHhhhhhhHHHHHHHHhhhccccccCCceEEEeccccccccCCc
Q psy12680 1866 SHEWSDGILAVSYRQFAMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPA 1945 (2567)
Q Consensus 1866 ~~eW~dGil~~~~r~~~~~~~~~~~~iv~Dg~~d~~wie~ln~~ldD~k~l~l~~Ge~i~~~~~~~life~q~L~~aS~a 1945 (2567)
.+.+.+|++.++...| ......+|++-+ +
T Consensus 504 ----------------------------------------~~~~~~dl~~~~r~~g--~~~~~~~f~~~~---------~ 532 (1395)
T KOG3595|consen 504 ----------------------------------------IEDFREDLKAILRKAG--LKNKETVFILTD---------S 532 (1395)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhc--cCCCceEEeech---------H
Confidence 5667788889999888 566777776644 5
Q ss_pred cccchhhHhhhhhccCCCccCCCCChhHHHHHHHhhchhhhhhhccCCCcccHHHHhHhhhC------------------
Q psy12680 1946 TITDESMVEDLSNLLNSGEVPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTMMALFKFFVD------------------ 2007 (2567)
Q Consensus 1946 ~I~~e~fLE~iN~lL~sGevP~Lf~~dE~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~fv~------------------ 2007 (2567)
+|.+|+|||+||+||++|||||||++||++.+...+....+.. ......+.+++|.||+.
T Consensus 533 ~i~~e~fle~ln~ll~~gevp~lf~~de~~~~~~~~~~~~~~~--~~~~~~s~e~~~~~f~~~~~~~l~~vl~~~~~g~~ 610 (1395)
T KOG3595|consen 533 QIKDESFLEDLNNLLASGEVPNLFTGDELDEIKMELAGEMGEE--AKLILDSRENLYLFFIFRVRRNLHVVLSVSPVGDA 610 (1395)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCccchHHHHHHHHHHHHHhhhh--ccccCccHHHHHHHHHHHHHHhcceeEEeCchhhH
Confidence 6999999999999999999999999999999665554332222 23355677888888873
Q ss_pred --------------------CCCcHHHHHHHHHHhcccCCCC--HHHHHHHHhhhhhhhhhhhhhhHHHHHHcCCccccC
Q psy12680 2008 --------------------TPWPPDALLAVATRFLNEVELS--EAERQISIDMCQNFHVSTQNLSDEFLVKTSRHVYVT 2065 (2567)
Q Consensus 2008 --------------------~~Wp~eAL~~VA~~~L~~~~~~--~~~~~~~~~~~~~~H~sv~~~s~~~~~~~~r~~yvT 2065 (2567)
++||.+||.+|+++|+.+..+. ...+..+...+..+|.++.+.+..|+...+|++|+|
T Consensus 611 ~~~r~~~~pal~~~~~i~w~~~w~~~al~~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~t 690 (1395)
T KOG3595|consen 611 FRLRARKFPALVNRCTIDWFDSWPTEALLSVAEEFLASQDILSPSEKRGAISLTMILFHETVLESFASYFDRLSRHNYVT 690 (1395)
T ss_pred HHHHHHhChhhhccchhhhcccCCHHHHHHHHHHHHhhhcCCCcccccchhhhhhhhhhhhHHHHhHHHHHhcCceeecC
Confidence 4899999999999999977654 334566677888899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2066 PTSYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAI 2145 (2567)
Q Consensus 2066 P~syL~~l~~f~~ll~~k~~el~~~~~rl~~GL~KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a~~ 2145 (2567)
|++|++|+.+|..|+++|+.++.....|+.+||+||.+|.++|+.|+.+|..++|+|..+.+++...+.++..++.+++.
T Consensus 691 p~~~l~~i~~f~~ll~~k~~~~~~~~~r~~~gl~kl~~a~~~v~~l~~~l~~~~~el~~~~~~a~~~l~~i~~~~~~~e~ 770 (1395)
T KOG3595|consen 691 PTSYLEFIGTFKKLLKEKRSEVRLRKLRLELGLDKLKEAGEQVAGLQKELAALQPELQVKSKEANDVLAKILKETQAAEA 770 (1395)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876642
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHh
Q psy12680 2146 VAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVK 2225 (2567)
Q Consensus 2146 ~~~~v~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eir 2225 (2567)
.. +.+.+.+..+++++..++++|++|+++|++|+|+|++|.+|+++|+|.|++|+|
T Consensus 771 ~k------------------------~~v~~~e~~~~~~~~~~~~~k~~v~~~l~~a~P~leeA~aal~ti~k~~l~~lk 826 (1395)
T KOG3595|consen 771 QK------------------------EAVLEDEKKAQEKAGLIQAQKAEVEEDLEEAEPALEEASAALSTIKKADLSELK 826 (1395)
T ss_pred HH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCChhhHHHHH
Confidence 22 223344555566667778889999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCCCCcCCCCCCcccCCcHHHHhhhcch-hhHhhhhccCCCCCCHHHHHHHHhhhcCCC
Q psy12680 2226 TMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLVEDYWGPSKKLLGDI-KFLEGLTNFNKDNVPAAVIKRLEDEFLSRE 2304 (2567)
Q Consensus 2226 s~~~PP~~V~~VmeaVciLlg~~~~~~~~~~~~~~~~~W~~ak~~L~~~-~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~ 2304 (2567)
||.+||.+|+.+|||||+|+|.+ ...+|..+.++|.+. .|+..+.+||+++|++.+.+++.+.|+++|
T Consensus 827 s~~~PP~~Vk~~meavciLlg~~-----------~~~~w~~~~~~~~~~~~fl~~l~~~~~~~i~~~~~k~i~~~~~~~p 895 (1395)
T KOG3595|consen 827 SMKNPPHAVKLVMEAVCILLGRL-----------SSTDWKNISKLLLSDDFFLIILREFDKDEIPEEIMKLIKKFYFQNP 895 (1395)
T ss_pred hcCCCcHHHHHHHHHHHHHhccc-----------cCCChHHHHHHhhcccHHHHHhhcCccccChHHHHHHHHHhhcCCc
Confidence 99999999999999999999951 123476666665555 599999999999999999999988899999
Q ss_pred CCCHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2305 DFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKK 2384 (2567)
Q Consensus 2305 ~F~~e~v~~aS~Aa~~Lc~WV~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~ 2384 (2567)
+|+|+.++++|.||++||.||.|+..|++|++.|+|++++++.++.++.++++.++++++++++++++++.++++|++..
T Consensus 896 ~f~~~~v~~~s~a~~~l~~wv~a~~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~ 975 (1395)
T KOG3595|consen 896 DFVPEKVNRASLACEGLCLWVIAIDKYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLI 975 (1395)
T ss_pred cCCHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhcchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy12680 2385 KELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTWVKE 2464 (2567)
Q Consensus 2385 ~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~ll~~W~~~ 2464 (2567)
.+++.++.++..|+.|+.||.+|+.+|++|+.||.++++.+..+...++||+|++|++++|+|+|+..+|..++..|...
T Consensus 976 ~~~~~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l~gd~ll~~~~~~y~g~~~~~~r~~~~~~~~~~ 1055 (1395)
T KOG3595|consen 976 AEKQELEEDMDACELKLLRAEELIQGLSGEKERWSETSEQFSKQYSRLVGDVLLSSAFVAYLGAFDQLYRQSLLRLWESL 1055 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhhHHHHhhhhhhhhccccCHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcccCCCccccccCCHHHHHHHHhCCCCCCchhhhhHHHhhcCCCcceeecCchhHHHHHHhhhccCCCeEEECC
Q psy12680 2465 VAACNIVCTKDFQLGAVMGNPVEIRAWNIFGLPCDSFSIDNGIIIKNSRRWPLMIDPQEQANKWIKNMEKANGLNVIRLS 2544 (2567)
Q Consensus 2465 l~~~~I~~~~~f~l~~~L~~~~~i~~W~~~GLP~D~~SiENaiIi~~s~r~PLlIDPq~Qa~~Wik~~~~~~~l~v~~~~ 2544 (2567)
+....+ +.+++++..+++++.++..|+..|||.|++|+|||+|+.++.|||++||||+|++.||+|+++.+++.+++++
T Consensus 1056 ~~~~~~-~~~~~~~~~~l~~~~~~~~w~~~~lp~~~~s~en~~i~~~~~~~~l~id~q~q~~~~i~~~~~~~~~~~i~~~ 1134 (1395)
T KOG3595|consen 1056 CTQLKI-VLSNFSLISMLVDPTEILNWNIRGLPADDLSIENGIIITNSNRWPLIIDPQGQANEWIKNKESENKLQVISFN 1134 (1395)
T ss_pred cCcccc-cccccchHhhcCchHhhcchhhccCcccccchhHHHHHhccCCCceeecchhhhhHhHhhhhhhcccceeecc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCceecc
Q psy12680 2545 NTDYMRILEGAIGFGFPAKKL 2565 (2567)
Q Consensus 2545 ~~~f~~~LE~ai~~G~p~~~~ 2565 (2567)
+.+|++.+|+|++||.|+-..
T Consensus 1135 ~~~~l~~le~a~~~g~~il~~ 1155 (1395)
T KOG3595|consen 1135 EKEFLRQLENALRFGEPVLIE 1155 (1395)
T ss_pred chhHHHHHHhHhccCCceecc
Confidence 999999999999999998654
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.1e-123 Score=1172.34 Aligned_cols=1517 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhhhhcCCc
Q psy12680 9 AGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEE 88 (2567)
Q Consensus 9 aGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~ 88 (2567)
+|||||||+|.|+..+|| +| |++||+ +||..|..|-|+|| |||||||++-++ .|+-.++.+|+.++-+..
T Consensus 952 ~~t~~s~~~~~~~~~~gr-i~-----d~~~~~--sri~~g~~~~~~~g-~~e~~~lde~~~-~i~~~~~~~~~~~~~~~~ 1021 (3164)
T COG5245 952 VDTENSRVYGMLVAGKGR-IY-----DGTEPR--SRIEAGPICEEERG-TEESALLDEISR-TILVDEYLNSDEFRMLEE 1021 (3164)
T ss_pred cCCCCceeHHHHhcCCCe-ee-----cCCChh--hhhhccceehhhcc-chhHHHHHHHHH-HHhhhHHhcchHHHHHHH
Q ss_pred eEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhh
Q psy12680 89 EILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIVKKLAPYKQLYDNCIEYQEKHKMW 168 (2567)
Q Consensus 89 ~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L~~~~~~~~Ly~~~~~~~~~~~~~ 168 (2567)
.....-.+-.+.|+.++|||+|| |+++|+|+|.-||.+.|-.| ..-|++.
T Consensus 1022 ~~s~~~e~~~~sp~t~v~~~in~----r~~~~e~~~~a~~~f~~~~p-~g~i~~~------------------------- 1071 (3164)
T COG5245 1022 LNSAVVEHGLKSPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSR------------------------- 1071 (3164)
T ss_pred HHHHHHHcCCCCCCCceEEEecc----hhhHHHHHHHHHHHHHhcCC-chhHHHH-------------------------
Q ss_pred hhhhhcccChhhhHHHHHHHHHHHHHHhhhccCCCCcchhhhhhhhHHHHhhhcchhhhhccCCCcccchhhhhhhccCC
Q psy12680 169 AESIVGTFDPEQIEEETNEFYKNIYKLKLQFSHLPGPYGIASKVLDQVQEFKEHMPIIQTLGNPGLQLRHWEKISEVVGF 248 (2567)
Q Consensus 169 ~~~i~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vl~~~~~~k~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 248 (2567)
.++|+.++..|-..+...+...+||-+ +-+..+|++...+-....
T Consensus 1072 ---------~~sl~~~i~~f~~~~~~~~~~~~~~~f--~~~~~~l~~~~~~l~e~~------------------------ 1116 (3164)
T COG5245 1072 ---------RESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMLEEKT------------------------ 1116 (3164)
T ss_pred ---------HHHHHHHHHHHHHHhhhhhcccchhhh--HHHHHHHhhcchHHHHhh------------------------
Q ss_pred CCCchhhhhHHHHHHhhccccccchhhhHHHHhhhhccCcccccccccchhhhhhhhhccccccccccCCCCCCcCCCCC
Q psy12680 249 PLSPEMEDFTLQRIFNYGLEEYVPKFEIWKDIMKTVAADPRVMSVVEIPKLKENLQKCNGLLDMGITSDLFPGIELPETD 328 (2567)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~DlFP~~~~~~~~ 328 (2567)
|..+. ++.....|.+...|..--..+ +..
T Consensus 1117 ------e~~~~------------------------------i~~~~~lp~i~dtl~e~~~~~---------------da~ 1145 (3164)
T COG5245 1117 ------EYLNK------------------------------ILSITGLPLISDTLRERIDTL---------------DAE 1145 (3164)
T ss_pred ------HHHHH------------------------------HHHHhCCCchhHHHHHHHHHH---------------hhc
Q ss_pred hHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEe
Q psy12680 329 YTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVI 408 (2567)
Q Consensus 329 ~~~l~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~i 408 (2567)
.+.+...-...|....-|...-=+..-+.+|-+..+....+++|..|+||+..|++-++-+ ++.-..|++
T Consensus 1146 ~~~~~~~s~~~~~~~s~q~sg~~~a~f~~f~~~~~t~~~~~~~~~~~~~k~~~~~~~~d~~----------~h~~~~yv~ 1215 (3164)
T COG5245 1146 WDSFCRISESLKKYESQQVSGLDVAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACDYL----------WHVKSPYVK 1215 (3164)
T ss_pred CCchhHHHHHHHHHhhccccCccHHHHHHHHHHhhhcHHHHHHHHHhhcccchhhhhhccc----------cccCchhhH
Q ss_pred ccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecC
Q psy12680 409 NPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALA 487 (2567)
Q Consensus 409 nPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~ 487 (2567)
. .+=.+|.||. |+|+.+.|+-.... .+.+-|++||. ++|.||+++||||+++++||||
T Consensus 1216 ~-----------~~~~a~~e~r-~~f~~~~r~d~~~~~~~s~~~~~~~~-----yve~~~a~~~~~kl~~~~~ge~---- 1274 (3164)
T COG5245 1216 K-----------KYFDADMELR-QFFLMFNREDMEARLADSKMEYEVER-----YVEKTKAEVSSLKLELSSVGEG---- 1274 (3164)
T ss_pred H-----------HHhhhhHHHH-HHHHHHhHHhhhhhhccceEEEehHH-----HHHHHHhhhccceeeeccCCCc----
Q ss_pred CCCeEEEecCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhcCCCCcccccccccccccccccccccccccCCCccc
Q psy12680 488 PTTSLIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNTLPPKVSRCGMIYMEPATLGWECLVDSWLNTLPPKV 567 (2567)
Q Consensus 488 ~~~~llFEv~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (2567)
+++|| +|. ..||||.|||.-|.+-+-++-+..+.--+......+..|-..+ ..
T Consensus 1275 ---~v~~~--nl~-s~~~~v~rc~~~~ds~~~~St~~~~~~~lg~T~~~Ld~~ld~f---------------------s~ 1327 (3164)
T COG5245 1275 ---QVVVS--NLG-SIGDKVGRCLVEYDSISRLSTKGVFLDELGDTKRYLDECLDFF---------------------SC 1327 (3164)
T ss_pred ---eEEEe--eCC-CccchhheeeeeecccchhccchhhHHhhccchhhhhhhhhhh---------------------hH
Q ss_pred ccchhHHHHHHHHHhhhhHHHHhhccchhhhhhHHHHHHHhhhccccccccccchhHHHHHHHHHHhhccccCCcccccC
Q psy12680 568 QEGHRDSLRQLIMRFCPTILYFLRRTPFARMVDDAMEAYKKKKREEWEMFPTQDSNLIRSLLNLFDTFLDDFNDEKYYET 647 (2567)
Q Consensus 568 ~~~~~~~l~~l~~~~~~~~l~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~sl~~l~~~~l~~~~~~~~~~~ 647 (2567)
.+........+.-.++..++.|- .+..-.++.+.......-......+...-..++..+
T Consensus 1328 ~~~~~~~~de~~m~~~a~~~~fs---------~dl~hI~~~rrF~~~~~~~~~s~~l~~~s~~~~~~L------------ 1386 (3164)
T COG5245 1328 FEEVQKEIDELSMVFCADALRFS---------ADLYHIVKERRFSGVLAGSDASESLGGKSIELAAIL------------ 1386 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHhhhhhhhhhhhhhHhHHHHhhhHHHHHHhc------------
Q ss_pred CCChhhHHHHHhHHHHHhhhccccccCCCChhhHHHHHHHHhhhcccchhhcccCCCcccCCCCCCCcccccCCCCceee
Q psy12680 648 HPSLDIRSQLEGIFFFSCIWSMGACLTFETKPHFSNLLYGLMEKEFPASLRESLGLPVELCQPPAKPYLFTVPPQGTVYD 727 (2567)
Q Consensus 648 ~~~~~~~~~~e~~F~fs~iWs~Gg~l~~~~r~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~v~d 727 (2567)
...+....+...--..+.|.+-|.-+.+++++|-.++-.-+.
T Consensus 1387 -~~K~l~~~mk~~I~~vL~~~~~gD~~~es~~rf~~~~~~~~~------------------------------------- 1428 (3164)
T COG5245 1387 -EHKDLIVEMKRGINDVLKLRIFGDKCRESTPRFYLISDGDLI------------------------------------- 1428 (3164)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHhhhhhhh-------------------------------------
Q ss_pred EEEeeCCCCccccCccccCCCCCCCCCCCccceeeccchhhhHHHHHHHHHhcCCCeEEecCCCCCccceeehhhhhhcc
Q psy12680 728 YRFIKEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKN 807 (2567)
Q Consensus 728 y~~~~~~~~~w~~W~~~~~~~~~~~~~~~~~~~~VpT~dt~r~~~ll~ll~~~~~pvll~G~~GtGKT~~i~~~~~~~~~ 807 (2567)
T Consensus 1429 -------------------------------------------------------------------------------- 1428 (3164)
T COG5245 1429 -------------------------------------------------------------------------------- 1428 (3164)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred ccccccchhhhhhhhhhhccccchhccccccccchhhHHHHHhhhhhhccccchhhhccccccccccccccccchhhhhh
Q psy12680 808 NSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSRLRSGFQHFLLKE 887 (2567)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (2567)
|.|++-
T Consensus 1429 --------------------------------------------------------------------------~dl~e~ 1434 (3164)
T COG5245 1429 --------------------------------------------------------------------------KDLNER 1434 (3164)
T ss_pred --------------------------------------------------------------------------hccchh
Q ss_pred hhcccccccccccccccchhhHHHHHHHhhhcccCcccCCCCCceeEEEeccCCCCcccccCCCChHHHHHHhhhccccc
Q psy12680 888 LSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWY 967 (2567)
Q Consensus 888 ~~~~~~~~~~~~fs~~ts~~~~q~~i~~~lekr~~~~~gp~~~k~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~y 967 (2567)
.+.+.....-.+.|+-++...
T Consensus 1435 sdye~~~i~~f~is~~~~~~~----------------------------------------------------------- 1455 (3164)
T COG5245 1435 SDYEEMLIMMFNISAVITNNG----------------------------------------------------------- 1455 (3164)
T ss_pred hhhHHHHHhhcccceEeeccc-----------------------------------------------------------
Q ss_pred cccchhhhhhhhhhhhhccCCCCCCCCcCcccccccceeeeccCCchhhHHHHHHHHhhhcccccccccccccCCCCccc
Q psy12680 968 DRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRHESCKGITSDLFPGIE 1047 (2567)
Q Consensus 968 d~~~~~~~~~~~~~~~~a~~p~~~~~~i~~r~~r~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1047 (2567)
T Consensus 1456 -------------------------------------------------------------------------------- 1455 (3164)
T COG5245 1456 -------------------------------------------------------------------------------- 1455 (3164)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred CCchhHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhhhhhhhhcccccccchhhhhhhHHHHHHHhhhcCCCCCC
Q psy12680 1048 LPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWSNQGGAPE 1127 (2567)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1127 (2567)
T Consensus 1456 -------------------------------------------------------------------------------- 1455 (3164)
T COG5245 1456 -------------------------------------------------------------------------------- 1455 (3164)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred CCCCCCCcccchhHHHHHHHHHhhhccCCccccccccchhhhhHHHHHHHHhhhhhhhhhcCCCceeeeeccceehhhHH
Q psy12680 1128 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMDWPGQTVLCVGSAYWTADVH 1207 (2567)
Q Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~q~vl~~~~i~wt~~v~ 1207 (2567)
T Consensus 1456 -------------------------------------------------------------------------------- 1455 (3164)
T COG5245 1456 -------------------------------------------------------------------------------- 1455 (3164)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred HHHhcCCCccchhHHhhHHHHHHHHHHHhcCCCccccccccceEEEEecchhhhhhhccCCCCCCchhhhhhhhceeecC
Q psy12680 1208 KAIANHPKGLSHYRDVCNAQINKIVEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVSVPVSDENDFQWLCQLRYYAEG 1287 (2567)
Q Consensus 1208 ~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~l~~~~r~~~~~li~~~vh~rdi~~~l~~~~~~~~~~f~w~~qlryy~~~ 1287 (2567)
T Consensus 1456 -------------------------------------------------------------------------------- 1455 (3164)
T COG5245 1456 -------------------------------------------------------------------------------- 1455 (3164)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred CCccccccccCCCCCCCCCCCCCc-ceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhcccccccc
Q psy12680 1288 KGRWKPWSDDLASAPAIPRDMPVN-QIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRS 1366 (2567)
Q Consensus 1288 ~~~w~~w~~~~~~~~~~~~~~~~~-~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~ 1366 (2567)
.++.+..-.+.+.+. ++++||.||+|+.-+..-+++..+.+++|||||||||+++..++
T Consensus 1456 ---------~Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sL----------- 1515 (3164)
T COG5245 1456 ---------SIAGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSL----------- 1515 (3164)
T ss_pred ---------ccCCceechhhhcccCCeecccccchhHHHHHHHHHhccceEEEECCCCCccchhcchhh-----------
Q ss_pred chhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccC----CccCCCCCcEEEEEEcCCCCccccccCCCChH
Q psy12680 1367 GFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRK----GVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPI 1442 (2567)
Q Consensus 1367 ~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~----~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~i 1442 (2567)
.+...+.++.+|||..|++.++...+|+..+.-+. +.|..|.-|.+|+|||+||||.-++||+|.+|
T Consensus 1516 ---------rs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeInLp~~~~y~~~~vI 1586 (3164)
T COG5245 1516 ---------RSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEINLPYGFEYYPPTVI 1586 (3164)
T ss_pred ---------hhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeeccCCccccccCCCceE
Q ss_pred HHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC-C-CCCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccC
Q psy12680 1443 EILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST-G-NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRG 1520 (2567)
Q Consensus 1443 elLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg-g-~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~g 1520 (2567)
-||||++++.|||......|++|.++.++||||||.+ | .+.+.||+||-..+++++|+-.+|.+||..++.+.+.
T Consensus 1587 ~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s~l--- 1663 (3164)
T COG5245 1587 VFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSYL--- 1663 (3164)
T ss_pred EeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCceEEEecCcchhhHHHHHHHHHHHHHH---
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhccchHHHhcH-HHHHHHhhhhhhhhhccc
Q psy12680 1521 FSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLSVPEAIESL-LSMKRLWVHEVLRVYYDR 1599 (2567)
Q Consensus 1521 f~~~v~~~~~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~~~~~~i~~~-~~l~rLw~HE~~RVF~DR 1599 (2567)
..++++..++.++.|.+++|+....++. +-.+.||.|.||||+|++.|+..+....+.+. .+++++|+||++|+|.||
T Consensus 1664 ~~~ef~~~se~~~~aSv~ly~~~k~~~k-~~lq~~y~y~pReLtR~lr~i~~yaeT~~~t~~~slI~~wy~ea~r~~~dR 1742 (3164)
T COG5245 1664 CFDEFNRLSEETMSASVELYLSSKDKTK-FFLQMNYGYKPRELTRSLRAIFGYAETRIDTPDVSLIIDWYCEAIREKIDR 1742 (3164)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhh-hhcccccccChHHHHHHHHHHHhHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Q ss_pred ccCchhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCCCcccccccccccccCCCCCcCccCccccCCHHHHHHHHH
Q psy12680 1600 LVDSDDRLWLFNTLKYTVEKFLQ-EDMNQLFANLKEANSTEPVGEYELRNLIYCDFANPKADQRNYMEVTNLEDLRTIVE 1678 (2567)
Q Consensus 1600 Lv~~~D~~~f~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~llf~~f~~~~~~~~~Y~~v~d~~~l~~~l~ 1678 (2567)
||...+..|+.+.+.+.+-+.++ -+...++.. .|+|++....+ ++.-+..++..+++
T Consensus 1743 LV~qkE~st~~q~ly~~~~~~~~e~~~g~i~e~----------------~I~fS~Il~~g------~~~l~k~dl~~fvE 1800 (3164)
T COG5245 1743 LVQQKESSTSRQDLYDFGLRAIREMIAGHIGEA----------------EITFSMILFFG------MACLLKKDLAVFVE 1800 (3164)
T ss_pred HHHHHhcchHHHHHHHHHHHhhhhhhhcccchh----------------hhhHHHHHhcc------HHHHhhhhHHHHHH
Q ss_pred HHHHHHhccCCCCcccccccccccCCchhHHHHHHhHhHHHHhhhhccCCCCCcccccccchhhHHHHhhhhccccCCCC
Q psy12680 1679 RYLTEFNNMSKKPMNLVLFRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQYLTVTGRVGPG 1758 (2567)
Q Consensus 1679 ~~l~~yN~~~~~~m~LVlF~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~h~~f~lr~~~~vl~~~~~~~rv~~~ 1758 (2567)
+.-..|.. +|.+..++..++++.|+.+..|
T Consensus 1801 e~~K~F~s----------------------------------------------shl~v~~V~~~~~l~HiLr~~R---- 1830 (3164)
T COG5245 1801 EVRKIFGS----------------------------------------------SHLDVEAVAYKDALLHILRSRR---- 1830 (3164)
T ss_pred HHHHHhcc----------------------------------------------cCCCCceeeeHHHHHHHHHHHH----
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhhccccEEEEcCCCCChHHHHHHHHHHHHHHHhhhcc
Q psy12680 1759 PPENSFSKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL 1838 (2567)
Q Consensus 1759 ~~~~~~~~~d~~~l~~al~~~~~~~~l~~~p~~~~ki~ql~~~~~~r~~~lLVG~~GSGK~sl~rlla~~l~~~~~~~~~ 1838 (2567)
-.+.+.||+||.|+.|.|++-++++++
T Consensus 1831 -----------------------------------------~l~~vggh~~l~g~~~~g~~~~~efvc------------ 1857 (3164)
T COG5245 1831 -----------------------------------------GLLVVGGHGVLKGVLIRGACDAREFVC------------ 1857 (3164)
T ss_pred -----------------------------------------HHHHhccchhhhhhhhhhhHHHHHHHH------------
Q ss_pred CCceEEEEEecccccccccccccccccccccccchhHHHHHHHhhhcccCCeEEeecCCcchHHHhhhhhhHHHHHHHHh
Q psy12680 1839 GEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCL 1918 (2567)
Q Consensus 1839 ~~~~v~~~~inpk~is~~~~Yg~~~~~~~eW~dGil~~~~r~~~~~~~~~~~~iv~Dg~~d~~wie~ln~~ldD~k~l~l 1918 (2567)
|.+|. .+++....+.+ ++..|.|.+|+..+
T Consensus 1858 ------------------------------wlN~~---~m~e~~~hr~~-----------------~~~Df~d~lk~~~~ 1887 (3164)
T COG5245 1858 ------------------------------WLNPR---NMREIFGHRDE-----------------LTGDFRDSLKVQDL 1887 (3164)
T ss_pred ------------------------------HhCcc---chhhhhccccc-----------------chhhHHHHHHHHHH
Q ss_pred hhccccccCCceEEEeccccccccCCccccchhhHhhhhhccCCCccCCCCChhHHHHHHHhhchhhhhhhccCCCcccH
Q psy12680 1919 MSGEIIALAPTTSLIFEPQDLEVASPATITDESMVEDLSNLLNSGEVPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTM 1998 (2567)
Q Consensus 1919 ~~Ge~i~~~~~~~life~q~L~~aS~a~I~~e~fLE~iN~lL~sGevP~Lf~~dE~~~i~~~~~~~~~~~~~~~~~~~~~ 1998 (2567)
..| +.....+.+|||.- +...+|||++|+||.+.++|+||+++|++.|-+.++...+..+....++.+.
T Consensus 1888 ~~~--~~~~r~Cl~I~Esi---------~~es~fLe~~N~LL~n~~~~~lf~gne~~~I~~nlr~~~es~~L~~dTe~tl 1956 (3164)
T COG5245 1888 RRN--IHGGRECLFIFESI---------PVESSFLEDFNPLLDNNRFLCLFSGNERIRIPENLRFVFESTSLEKDTEATL 1956 (3164)
T ss_pred hcc--ccCCceEEEEecCC---------ccchHHHHHhhhhhhccccchhccchhHHHHHHHHHhhhhccccccCCHHHH
Q ss_pred HHHhHhhhC-----------------------------------CCCcHHHHHHHHHHhcccCCC---------------
Q psy12680 1999 MALFKFFVD-----------------------------------TPWPPDALLAVATRFLNEVEL--------------- 2028 (2567)
Q Consensus 1999 ~~l~~~fv~-----------------------------------~~Wp~eAL~~VA~~~L~~~~~--------------- 2028 (2567)
..+|--.+. +.|..+.+.+||+..+...--
T Consensus 1957 t~vFl~~~~~Nl~vVFs~c~s~d~~~~a~i~spal~nrc~id~~~~wdt~~msq~An~V~~~s~~~~~v~~in~el~~~k 2036 (3164)
T COG5245 1957 TRVFLVYMEENLPVVFSACCSQDTSVLAGIRSPALKNRCFIDFKKLWDTEEMSQYANSVETLSRDGGRVFFINGELGVGK 2036 (3164)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCchHhhccCCHHHhhhhhhhhhhhccHHHHHHHHhhhhheeecCCcccccccccccCc
Q ss_pred CHHHHHHHHhhhhhhhhhhhhhhHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12680 2029 SEAERQISIDMCQNFHVSTQNLSDEFLVKTSRHVYVTPTSYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQI 2108 (2567)
Q Consensus 2029 ~~~~~~~~~~~~~~~H~sv~~~s~~~~~~~~r~~yvTP~syL~~l~~f~~ll~~k~~el~~~~~rl~~GL~KL~ea~~~V 2108 (2567)
+.......++..+..|.+.-..+ ...+ .+|-+|-+|+++++.|..+...+.++++..+.++.+|+.|++|+...|
T Consensus 2037 g~~i~~~~~~~~vv~~~r~f~~~----m~~G-s~~~s~~~fI~gl~~~~~~~~~~~~~l~~~~~~l~~g~~K~nE~~~g~ 2111 (3164)
T COG5245 2037 GALISEVFGDDAVVIEGRGFEIS----MIEG-SLGESKIKFIGGLKVYDARCVIYIEELDCTNVNLVEGVRKYNEYGRGM 2111 (3164)
T ss_pred chhhHHHHhhhheeecccceEEE----eeec-cCccCcceeecchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy12680 2109 AVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQALAA 2188 (2567)
Q Consensus 2109 ~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a~~~~~~v~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 2188 (2567)
.+++++|...+.+|-.+.+++...+..+=.++.+. +..+.-+++-++..+.+.++.
T Consensus 2112 ~elke~Ls~~~~il~~keK~a~d~L~~~~~er~e~------------------------E~K~v~~e~~~~~l~~~ee~v 2167 (3164)
T COG5245 2112 GELKEQLSNTVVILGVKEKNADDALSGTPGERLER------------------------EVKSVFVEAPRDMLFLLEEEV 2167 (3164)
T ss_pred HHHHHHHhcceeeeeecccccchhhhcChhhHHHH------------------------HHHHHHHHhHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCChHHHHHHHHHHHHHhcCCCCCcCCCCCCcccCCcHHHH
Q psy12680 2189 QAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLVEDYWGPSK 2268 (2567)
Q Consensus 2189 ~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~PP~~V~~VmeaVciLlg~~~~~~~~~~~~~~~~~W~~ak 2268 (2567)
.+.|..+.+..+.++|++.+|+..|.+|+|++|.|||||-+||.+|+.+||+||-|||...+. |...+
T Consensus 2168 rkrk~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLgf~a~~------------w~~~q 2235 (3164)
T COG5245 2168 RKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAKI------------WFGEQ 2235 (3164)
T ss_pred HHHhhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcCCcccceeeHHHHHHHhcchhHH------------hhhHH
Q ss_pred hhhcchhhHhhhhccCCC-CCCHHHHHHHHhhhcCCCCCCHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q psy12680 2269 KLLGDIKFLEGLTNFNKD-NVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQ 2347 (2567)
Q Consensus 2269 ~~L~~~~Fl~~L~~fDkd-~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~Aa~~Lc~WV~A~~~Y~~V~~~V~Pk~~~l~~ 2347 (2567)
++|.+++|+..+.+||.+ +++++.+++++..|.+||.|+.+.+.|||+||+||..||.++++|.+|.+++.|+|++.+.
T Consensus 2236 Q~LrrDDfi~~i~~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~cn~skvLE~~~plr~E~kR 2315 (3164)
T COG5245 2236 QSLRRDDFIRIIGKYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKVLEVKIPLREEEKR 2315 (3164)
T ss_pred HHhhhhhHHHHhccCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHhhHHHhhhhcccchhHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHH
Q psy12680 2348 AEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNE 2427 (2567)
Q Consensus 2348 ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~ 2427 (2567)
.+-+-..+++.|...+..-+.+++++..++..|+-.+.+.+..+.+++.+++++.|+..++..|..|+.||.....++-+
T Consensus 2316 I~~E~~~~e~~L~~~~~~s~dl~~~~l~~r~~YSl~I~~Vh~~~~~md~v~~~~~rsi~v~~~l~~e~~ew~g~~~~~pk 2395 (3164)
T COG5245 2316 IDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGKIADMDTVHKDVLRSIFVSEILINEDSEWGGVFSEVPK 2395 (3164)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHhhhhceeeeeecceecccccchHhhccH
Q ss_pred HhhcchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhh-hcCCcccCCCccccccCCHHHHHHHHhCCCCCCchhhhhH
Q psy12680 2428 KYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTWVKEVA-ACNIVCTKDFQLGAVMGNPVEIRAWNIFGLPCDSFSIDNG 2506 (2567)
Q Consensus 2428 ~~~~l~GD~llaaa~isY~G~f~~~~R~~ll~~W~~~l~-~~~I~~~~~f~l~~~L~~~~~i~~W~~~GLP~D~~SiENa 2506 (2567)
....|+|||+++|.+..|.|..++..|..++......+. +..++...+..+.+.+..-.+-.+|-.+ +.++++||.
T Consensus 2396 ~m~eL~g~~~~sS~~~~y~g~l~~~~Ra~~~~~~~~~Is~~F~~k~~~~r~fI~~~Vq~~e~~K~~~c---~tDy~lEN~ 2472 (3164)
T COG5245 2396 LMVELDGDGHPSSCLHPYIGTLGFLCRAIEFGMSFIRISKEFRDKEIRRRQFITEGVQKIEDFKEEAC---STDYGLENS 2472 (3164)
T ss_pred HHHHhhcCCcchheeeeeeccccHHHHHHHHhhhHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHh---cchhcchhh
Q ss_pred HHhhcCC-CcceeecCchhHHHHHHhhhccCCCeEEECCChhhHHHHHHHHhcCCceec
Q psy12680 2507 IIIKNSR-RWPLMIDPQEQANKWIKNMEKANGLNVIRLSNTDYMRILEGAIGFGFPAKK 2564 (2567)
Q Consensus 2507 iIi~~s~-r~PLlIDPq~Qa~~Wik~~~~~~~l~v~~~~~~~f~~~LE~ai~~G~p~~~ 2564 (2567)
-|+.+.. -.|+++||..|...-++++++++.-...++....|.+.|++|+|+|..+-+
T Consensus 2473 ~i~~~~qd~~~~L~dpss~ivt~~~~~y~~kkail~sf~e~~f~~~L~~a~r~gs~~iI 2531 (3164)
T COG5245 2473 RIRKDLQDLTAVLNDPSSKIVTSQRQMYDEKKAILGSFREMEFAFGLSQARREGSDKII 2531 (3164)
T ss_pred HHHhhccccHhHhcCcHHHHHHhhHHHhccchhhhhhhhhHHHHHHHHHHHHhccceEe
No 3
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=100.00 E-value=5.7e-66 Score=645.49 Aligned_cols=342 Identities=43% Similarity=0.669 Sum_probs=301.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy12680 2092 NRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQALAAQAMKSVA 2171 (2567)
Q Consensus 2092 ~rl~~GL~KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a~~~~~~v~~~~~~~~e~~~~~~~~~~~~ 2171 (2567)
+||++||+||.+|+.+|++|+.+|..++|+|+++++++++++.+++.++++++...
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~------------------------ 56 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKK------------------------ 56 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 58999999999999999999999999999999999999999999988776653211
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCChHHHHHHHHHHHHHhcCCCCC
Q psy12680 2172 EGVKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSER 2251 (2567)
Q Consensus 2172 ~~~~~~e~~~~~~~~~~~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~PP~~V~~VmeaVciLlg~~~~~ 2251 (2567)
..+..+++.+++++.++++++++|+++|++|+|+|++|++||++|+++||+|||||++||++|+.||+|||+|||.+..
T Consensus 57 ~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~- 135 (344)
T PF12777_consen 57 AIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGK- 135 (344)
T ss_dssp -HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhcccc-
Confidence 1123344555566667777899999999999999999999999999999999999999999999999999999985421
Q ss_pred cCCCCCCcccCCcHHHHhhhcch-hhHhhhhccCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHhHhhhHHHHHHHHHHH
Q psy12680 2252 VPDAGGQLVEDYWGPSKKLLGDI-KFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICK 2330 (2567)
Q Consensus 2252 ~~~~~~~~~~~~W~~ak~~L~~~-~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~Aa~~Lc~WV~A~~~ 2330 (2567)
...+++|.++|++|+++ +|+++|++||+|+|++.++++|+ .|+++|+|+|+.|+++|.||+|||.||+||+.
T Consensus 136 ------~~k~~~W~~ak~~l~~~~~Fl~~L~~fd~~~i~~~~~~~l~-~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~ 208 (344)
T PF12777_consen 136 ------LPKDTSWESAKKLLSDSDNFLQRLKNFDKDNIPEATIKKLK-KYLKNPDFNPEKVRKASKAAGSLCKWVRAMVK 208 (344)
T ss_dssp ------EE---HHHHHHCHHCSSTTHHHHHHHS-GGG--HHHHHHHH-CTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHH
T ss_pred ------ccccccHHHHHHHHHhHHHHHHHHHhhccccccHHHHHHHH-HHhcCCCCCHHHHHHHhhcchHHHHHHHHHHH
Confidence 11356799999999984 89999999999999999999996 59999999999999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12680 2331 YDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGK 2410 (2567)
Q Consensus 2331 Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~ 2410 (2567)
|++|+++|+|++++++++++++..++++|++++++|++++++++.|+.+|+++++++++|+.+++.|+.||+||++|++|
T Consensus 209 Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 209 YYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHHHHHHHHHhhcchhHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHHh
Q psy12680 2411 LGGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVS-TWVKEV 2465 (2567)
Q Consensus 2411 L~~Ek~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~ll~-~W~~~l 2465 (2567)
|++|+.||+++++.++.+..+++||||||||||+|+||||+.||+.|++ .|...|
T Consensus 289 L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~l~~~~W~~~l 344 (344)
T PF12777_consen 289 LSGEKERWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTPEYRQELLKKMWKPYL 344 (344)
T ss_dssp CHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSHHHHHHHHHHH-----
T ss_pred hcchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999999999995 598653
No 4
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=3.1e-64 Score=608.86 Aligned_cols=270 Identities=46% Similarity=0.800 Sum_probs=234.3
Q ss_pred CCCCCCCcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccc
Q psy12680 1304 IPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQP 1383 (2567)
Q Consensus 1304 ~~~~~~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~ 1383 (2567)
+++++++++++|||+||+|+.++++.|+.+++|+|||||+|||||++|+. ++++++.+.|..
T Consensus 3 ~~~~~~~~~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~------------------~l~~l~~~~~~~ 64 (272)
T PF12775_consen 3 YDPEMPFNEILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQN------------------FLSSLDSDKYLV 64 (272)
T ss_dssp ----------T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHH------------------HHHCSTTCCEEE
T ss_pred cccccccceEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHh------------------hhccCCccccce
Confidence 35678999999999999999999999999999999999999999999853 345677788888
Q ss_pred eeeccccccCHHHHHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceee
Q psy12680 1384 LIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAV 1463 (2567)
Q Consensus 1384 ~~lnfSa~Tts~~~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~ 1463 (2567)
..+|||++|+|.++|++||++++||+|++||||.||++|+|+||+|||.+|+||||||+|||||++|+|||||+++++|+
T Consensus 65 ~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~ 144 (272)
T PF12775_consen 65 ITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWK 144 (272)
T ss_dssp EEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEE
T ss_pred eEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeeecCCCCCCCCCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHHHHHHHHHHHHH
Q psy12680 1464 KLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIFKES 1543 (2567)
Q Consensus 1464 ~i~diq~v~am~Ppggg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~ati~ly~~v 1543 (2567)
+|+|++++|||+|++|++++++||+|||+++++++|++++|.+||++++.+++...+|..++..+++++++||+++|+++
T Consensus 145 ~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i 224 (272)
T PF12775_consen 145 SIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKI 224 (272)
T ss_dssp EECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHH
T ss_pred EEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998877899999999999999999999999999999999999888899999999999999999999999
Q ss_pred HhhcCCCCCCcccccCchhHHHHHHHHhccchHHHhcHHHHHHHhhhh
Q psy12680 1544 LLNLLPTPTKSHYLFNLRDFARVIQGVLLSVPEAIESLLSMKRLWVHE 1591 (2567)
Q Consensus 1544 ~~~~lPTp~k~HY~FnlRDlsrv~qGll~~~~~~i~~~~~l~rLw~HE 1591 (2567)
+++|+|||.|+||+||||||+||+|||+++.++.+.+...++|||+||
T Consensus 225 ~~~~~ptp~k~HY~FnlRDlsrv~qGil~~~~~~~~~~~~l~rLW~HE 272 (272)
T PF12775_consen 225 RQQFLPTPSKPHYTFNLRDLSRVFQGILLASPESIKTKESLLRLWVHE 272 (272)
T ss_dssp HHHS-TTTTCTTTTSHHHHHHHHHHHHHHHHCTSSS-SHHHHHHHHHH
T ss_pred hcccCCCCccceeeccHHHHHHHHHHHHhcChhhcCCHHHheEeecCC
Confidence 999999999999999999999999999999999999999999999999
No 5
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=1.8e-56 Score=526.01 Aligned_cols=199 Identities=47% Similarity=0.790 Sum_probs=171.9
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhh
Q psy12680 1 MGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQ 80 (2567)
Q Consensus 1 lGGap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq 80 (2567)
+||+|.||||||||||+|+||++|||+|+|||||+++|+++|+|||+|++|+|||+||||||||+.+|||||+|||++||
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i~ 112 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVLSVISQQIQSIQ 112 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHHHhhhchHHHHHHHHH
Q psy12680 81 RGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIVKKLAPYKQLYDNCIE 160 (2567)
Q Consensus 81 ~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L~~~~~~~~Ly~~~~~ 160 (2567)
+|++++.+++.|+|++|+++|++||||||||||+||++||+|||++||||+|++||+++|+||+|.+
T Consensus 113 ~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~L~s------------- 179 (231)
T PF12774_consen 113 DALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIAEILLLS------------- 179 (231)
T ss_dssp HHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHHHHC-------------
T ss_pred HhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred HHHHhhhhhhhhhcccChhhhHHHHHHHHHHHHHHhhhccCCCCcchhhhhhhhHHHHhhhcch
Q psy12680 161 YQEKHKMWAESIVGTFDPEQIEEETNEFYKNIYKLKLQFSHLPGPYGIASKVLDQVQEFKEHMP 224 (2567)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vl~~~~~~k~~~~ 224 (2567)
.||.+++.|++++..+|+.+.++.+.|.|||+|+|.++.||..++.+||..|
T Consensus 180 ------------~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~kr~~p 231 (231)
T PF12774_consen 180 ------------QGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLKRGDP 231 (231)
T ss_dssp ------------CCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHHT---
T ss_pred ------------cCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHhcccC
Confidence 3888899999999999999999999999999999999999999999998653
No 6
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=7.4e-45 Score=440.18 Aligned_cols=193 Identities=46% Similarity=0.776 Sum_probs=160.1
Q ss_pred CCCccceeeccchhhhHHHHHHHHHhcCCCeEEecCCCCCccceeehhhhhhccccccccchhhhhhhhhhhccccchhc
Q psy12680 754 DMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIM 833 (2567)
Q Consensus 754 ~~~~~~~~VpT~dt~r~~~ll~ll~~~~~pvll~G~~GtGKT~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (2567)
++++++++|||+||+|+.|++++++.+++||||+||+|||||++|+..+
T Consensus 6 ~~~~~~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l------------------------------- 54 (272)
T PF12775_consen 6 EMPFNEILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFL------------------------------- 54 (272)
T ss_dssp -------T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHH-------------------------------
T ss_pred ccccceEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhh-------------------------------
Confidence 5889999999999999999999999999999999999999998885432
Q ss_pred cccccccchhhHHHHHhhhhhhccccchhhhccccccccccccccccchhhhhhhhcccccccccccccccchhhHHHHH
Q psy12680 834 NFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDII 913 (2567)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~i 913 (2567)
++++.++|....++||++|+++++|++|
T Consensus 55 ----------------------------------------------------~~l~~~~~~~~~~~~s~~Tts~~~q~~i 82 (272)
T PF12775_consen 55 ----------------------------------------------------SSLDSDKYLVITINFSAQTTSNQLQKII 82 (272)
T ss_dssp ----------------------------------------------------HCSTTCCEEEEEEES-TTHHHHHHHHCC
T ss_pred ----------------------------------------------------ccCCccccceeEeeccCCCCHHHHHHHH
Confidence 2334556777889999999999999999
Q ss_pred HHhhhcccCcccCCCCCceeEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCC
Q psy12680 914 MSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 993 (2567)
Q Consensus 914 ~~~lekr~~~~~gp~~~k~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~ 993 (2567)
|++++||+|++||||+||++|+||||+|||..|+||+|||+|+|||++|||||||+++..|+.++|+++||||+|++|.+
T Consensus 83 e~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~ 162 (272)
T PF12775_consen 83 ESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRN 162 (272)
T ss_dssp CTTECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--
T ss_pred hhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987668
Q ss_pred CcCcccccccceeeeccCCchhhHHHHHHHHhhhcc
Q psy12680 994 TVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLD 1029 (2567)
Q Consensus 994 ~i~~r~~r~f~~~~~~~~~~~~l~~i~~~~l~~~~~ 1029 (2567)
+|+|||+|||+++++++|+++++.+||+.+|.+|+.
T Consensus 163 ~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~ 198 (272)
T PF12775_consen 163 PISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLK 198 (272)
T ss_dssp SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTC
T ss_pred CCChHHhhheEEEEecCCChHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999986
No 7
>KOG3595|consensus
Probab=100.00 E-value=1.6e-33 Score=403.97 Aligned_cols=252 Identities=43% Similarity=0.762 Sum_probs=225.1
Q ss_pred HHHHhHHHHHhhhccccccCCCChhhHHHHHHHHhhhcccchhhcccCCCcccCCCCCCCcccccCCCCceeeEEEeeCC
Q psy12680 655 SQLEGIFFFSCIWSMGACLTFETKPHFSNLLYGLMEKEFPASLRESLGLPVELCQPPAKPYLFTVPPQGTVYDYRFIKEG 734 (2567)
Q Consensus 655 ~~~e~~F~fs~iWs~Gg~l~~~~r~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~v~dy~~~~~~ 734 (2567)
.+++++|.||++|++||.++.+.|.+|..+++..+. .+++++++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~ 84 (1395)
T KOG3595|consen 39 SHLERLFLFALIWALGGDLDADSREKFREFLRRLIN----------------------------------IIDLYYIDEE 84 (1395)
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh----------------------------------hhhheeeeec
Confidence 468899999999999999999999999999998653 3445566777
Q ss_pred CCccccCccccCCCCCCCCCCCccceeeccchhhhHHHHHHHHHhcCCCeEEecCCCCCccceeehhhhhhccccccccc
Q psy12680 735 KGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSG 814 (2567)
Q Consensus 735 ~~~w~~W~~~~~~~~~~~~~~~~~~~~VpT~dt~r~~~ll~ll~~~~~pvll~G~~GtGKT~~i~~~~~~~~~~~~~~~~ 814 (2567)
.+.|.+|.+.++ ...++... +++|||.||+|+.+++..+..+++|++++|++|+|||.+++...-
T Consensus 85 ~~~~~~~~~~~~-~~~~~~~~---~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~~~----------- 149 (1395)
T KOG3595|consen 85 IGDWEPWIDKVP-FELLEDHE---DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSELR----------- 149 (1395)
T ss_pred cccccchhhhCc-cccccccc---ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHHHH-----------
Confidence 889999999999 55444322 999999999999999999999999999999999999987743221
Q ss_pred hhhhhhhhhhhccccchhccccccccchhhHHHHHhhhhhhccccchhhhccccccccccccccccchhhhhhhhccccc
Q psy12680 815 FQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSRLRSGFQHFLLKELSIEQWQ 894 (2567)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (2567)
......+.
T Consensus 150 ------------------------------------------------------------------------~~~~~~~~ 157 (1395)
T KOG3595|consen 150 ------------------------------------------------------------------------SLQDREVY 157 (1395)
T ss_pred ------------------------------------------------------------------------hcccchhe
Confidence 00111112
Q ss_pred ccccccccccchhhHHHHHHHhhhcccCcccCCCCCceeEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhh
Q psy12680 895 PLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVA 974 (2567)
Q Consensus 895 ~~~~~fs~~ts~~~~q~~i~~~lekr~~~~~gp~~~k~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~ 974 (2567)
. +|||+.||+..+|.++++++++++++.||||.+|++++|+||+|||..|.||+|+|+|+|||+++++||||+.+..|
T Consensus 158 ~--~~fs~~ts~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddinmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~ 235 (1395)
T KOG3595|consen 158 L--LNFSSVTSSELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDINMPALDKYGDQPPIELLRQMLEHGGFYDRKKSEW 235 (1395)
T ss_pred E--EeeeeeccHHHHHHHHHHHHHHhcccCCCCCCCceeEEEEeccCCchhhhcCCccHHHHHHHHHHhceeecccccce
Confidence 2 89999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hhhhhhhhhhccCCCCCC-CCcCcccccccceeeeccCCchhhHHHHHHHHhhhcc
Q psy12680 975 VKLIEIQLMCAMGPPSTG-NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLD 1029 (2567)
Q Consensus 975 ~~~~~~~~~~a~~p~~~~-~~i~~r~~r~f~~~~~~~~~~~~l~~i~~~~l~~~~~ 1029 (2567)
+.+.|+++++||+||+|| +++++||.|||.+++++.|+.+++.+||+.++.||+.
T Consensus 236 ~~i~~i~~~~a~~~~~~gr~~i~~r~~r~f~~~~~~~~~~~sl~~if~~~~~~~~~ 291 (1395)
T KOG3595|consen 236 VEIENVQLVGAMNPPGGGRNDITERFLRHFLIVSLNYPSQESLTQIFNTILTGHLR 291 (1395)
T ss_pred eEEeeeEEEeecCCCCCccCcccHHHHHHeeeEeeCCCChhhHHHHHHHHHhcccC
Confidence 999999999999999999 8999999999999999999999999999999999975
No 8
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=5.9e-38 Score=376.80 Aligned_cols=199 Identities=34% Similarity=0.561 Sum_probs=154.2
Q ss_pred cccEEEEcCCCCChHHHHHHHHHHHHHHHhhhccCCceEEEEEecccccccccccccccccccccccchhHHHHHHHhhh
Q psy12680 1805 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMS 1884 (2567)
Q Consensus 1805 r~~~lLVG~~GSGK~sl~rlla~~l~~~~~~~~~~~~~v~~~~inpk~is~~~~Yg~~~~~~~eW~dGil~~~~r~~~~~ 1884 (2567)
|||+||||+|||||+|++|+++++.++ ...++++++.|
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~-----------------~~~~i~~~~~y------------------------- 68 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGY-----------------EVFQIEITKGY------------------------- 68 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTE-----------------EEE-TTTSTTT-------------------------
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhcc-----------------ceEEEEeeCCc-------------------------
Confidence 788999999999999999999986542 22355566666
Q ss_pred cccCCeEEeecCCcchHHHhhhhhhHHHHHHHHhhhccccccCCceEEEeccccccccCCccccchhhHhhhhhccCCCc
Q psy12680 1885 QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATITDESMVEDLSNLLNSGE 1964 (2567)
Q Consensus 1885 ~~~~~~~iv~Dg~~d~~wie~ln~~ldD~k~l~l~~Ge~i~~~~~~~life~q~L~~aS~a~I~~e~fLE~iN~lL~sGe 1964 (2567)
++++|.+|+|.++..+| +...++++++- |++|.+++|||+||+||++||
T Consensus 69 --------------------~~~~f~~dLk~~~~~ag--~~~~~~vfll~---------d~qi~~~~fLe~in~LL~sGe 117 (268)
T PF12780_consen 69 --------------------SIKDFKEDLKKALQKAG--IKGKPTVFLLT---------DSQIVDESFLEDINSLLSSGE 117 (268)
T ss_dssp --------------------HHHHHHHHHHHHHHHHH--CS-S-EEEEEE---------CCCSSSCHHHHHHHHHHHCSS
T ss_pred --------------------CHHHHHHHHHHHHHHHh--ccCCCeEEEec---------CcccchHhHHHHHHHHHhCCC
Confidence 36788899999999999 67888988884 566999999999999999999
Q ss_pred cCCCCChhHHHHHHHhhchhhhhhhccCCCcccHHHHhHhhhC-------------------------------------
Q psy12680 1965 VPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTMMALFKFFVD------------------------------------- 2007 (2567)
Q Consensus 1965 vP~Lf~~dE~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~fv~------------------------------------- 2007 (2567)
|||||++||++.|++.++..++..+ ..++.+++|+||+.
T Consensus 118 ip~LF~~eE~~~i~~~l~~~~~~~~----~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW 193 (268)
T PF12780_consen 118 IPNLFTKEELDNIISSLREEAKAEG----ISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDW 193 (268)
T ss_dssp -TTTS-TCHHHHHHHHHHHHHHHCT------SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEE
T ss_pred CCCCccHHHHHHHHHHhHHHHHHcC----CCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEe
Confidence 9999999999999999987666544 34577889999984
Q ss_pred -CCCcHHHHHHHHHHhcccCC-CCHHHHHHHHhhhhhhhhhhhhhhHHHHHHcCCccccCchhHHHHHHHHHHHH
Q psy12680 2008 -TPWPPDALLAVATRFLNEVE-LSEAERQISIDMCQNFHVSTQNLSDEFLVKTSRHVYVTPTSYLELISTFKQLL 2080 (2567)
Q Consensus 2008 -~~Wp~eAL~~VA~~~L~~~~-~~~~~~~~~~~~~~~~H~sv~~~s~~~~~~~~r~~yvTP~syL~~l~~f~~ll 2080 (2567)
++||+|||.+||++||++.+ .+...++.++++|+.+|.+|.+++++|+.+.+|++|+||++||+||++|++||
T Consensus 194 ~~~W~~eaL~~Va~~~l~~~~~~~~~~~~~l~~~~~~iH~sv~~~s~~y~~~~~r~~yvTP~syL~~i~~f~~Ll 268 (268)
T PF12780_consen 194 FDPWPEEALLSVANKFLSDIELLSEELKKSLAEIMVFIHQSVEEISRKYLQELRRYNYVTPKSYLEFIKTFKNLL 268 (268)
T ss_dssp EES--HHHHHHHHHHHCCHHHTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHCS------HHHHHHHHH------
T ss_pred CCcCCHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhccchHhHHHHHHHcCCcceECcHHHHHHHhhhccCC
Confidence 48999999999999999876 45666888999999999999999999999999999999999999999999986
No 9
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=100.00 E-value=5.6e-30 Score=327.72 Aligned_cols=1244 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHH-------------------------------------------
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGL------------------------------------------- 42 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m------------------------------------------- 42 (2567)
.|.+|||||.++..||..||..+-|.|-|.+.....|
T Consensus 470 VGeTGtGKTT~IQ~La~~l~~kltvin~sqqte~sd~lgGykpIn~~tl~lpl~e~f~~if~~Tfs~kKn~kfi~m~~r~ 549 (4600)
T COG5271 470 VGETGTGKTTMIQYLALKLHFKLTVINKSQQTEMSDDLGGYKPINGSTLGLPLHERFIDIFEGTFSMKKNIKFICMEQRV 549 (4600)
T ss_pred EecCCCchhhHHHHHHHHhhhhheehhhhhhccchhhcCCcccCCCcccccchHHHHHHHHHhhcchhhhHHHHHhHHhh
Q ss_pred ----------------------------------------------------------------------------HHhh
Q psy12680 43 ----------------------------------------------------------------------------GKFF 46 (2567)
Q Consensus 43 ----------------------------------------------------------------------------~rif 46 (2567)
--++
T Consensus 550 ~~~~~wkn~~Klw~ea~kis~~~ldgq~~~~n~qkrqkrl~~q~~l~nqwadfe~~vk~fe~~l~~~en~f~F~fveG~L 629 (4600)
T COG5271 550 SVPVCWKNKEKLWWEANKISSKALDGQQPLPNPQKRQKRLSNQVELRNQWADFEAVVKRFEGLLKLLENRFHFVFVEGIL 629 (4600)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhccCCCCCCChHHHhhhhhhHHHHHHhhhhHHHHHHHHHHHHhhcccceEEEEehhhH
Q ss_pred hhhhhcCccccccccccCCchhHHHHHHHHHhhhhhh---hcCCceEEEcCeEEEeeCceeEEEEeCC-CCCCCCCchhh
Q psy12680 47 KGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGV---TLGEEEILFEGTILKLDRTCSVFITMNP-GYAGRSELPDN 122 (2567)
Q Consensus 47 ~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~---~~~~~~~~f~g~~i~l~~~~~iFiTmNP-gYaGRseLPdn 122 (2567)
.-...+|-|..+||+|--+.|+|--|++.+..-..++ ..+ +-+-|+.+|++-+|--||| +--|..+||..
T Consensus 630 vk~~r~GeWlLLDEINLas~eTLe~I~~lL~~~es~ilLsE~G------D~~Pi~~Hp~FrlFgCMNP~tDvGKr~le~~ 703 (4600)
T COG5271 630 VKCMRNGEWLLLDEINLASEETLELIDGLLGKKESGILLSESG------DLRPIRIHPGFRLFGCMNPGTDVGKRKLEGS 703 (4600)
T ss_pred HHHHhcCceEEeeccccccHHHHHHHHhhhcCcccceeeeccC------CccccccCCCceEEeecCCCcccccccCCcc
Q ss_pred HhhccccccccCCCHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhhhhhhcccC--hhhhHHHHHHHHHHHHHHhhhcc
Q psy12680 123 LKSLFRTVAMMVPDYALISEIIVKKLAPYKQLYDNCIEYQEKHKMWAESIVGTFD--PEQIEEETNEFYKNIYKLKLQFS 200 (2567)
Q Consensus 123 Lk~lFRpvam~~PD~~lIaEi~L~~~~~~~~Ly~~~~~~~~~~~~~~~~i~~~~~--~~~l~~~~~~~~~~~~~l~~~~~ 200 (2567)
+++-|-.|.+-.|+. .+...-....|-.|-+. .+....++.++|..+..+.....
T Consensus 704 ~rsrFteIyVhsp~~-----------------------~l~DllsII~kyig~y~Is~E~v~~~IaElyleaKslsl~~~ 760 (4600)
T COG5271 704 FRSRFTEIYVHSPST-----------------------SLKDLLSIIHKYIGRYEISEERVSRKIAELYLEAKSLSLGKE 760 (4600)
T ss_pred cccceeEEEEeCccc-----------------------cHHHHHHHHHHHHhheecchHHHhHHHHHHHHHHHHhccCCe
Q ss_pred CCC-------CcchhhhhhhhHHHHhhhcchhhhhccCCCcccchhhhhhhccCCCCCchhhhhHHHHHHhhccccccch
Q psy12680 201 HLP-------GPYGIASKVLDQVQEFKEHMPIIQTLGNPGLQLRHWEKISEVVGFPLSPEMEDFTLQRIFNYGLEEYVPK 273 (2567)
Q Consensus 201 ~~~-------~~~~~~~~vl~~~~~~k~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (2567)
-.+ +..|...+.|.-+.....-...-+++... -.++....+++.-++.
T Consensus 761 lvdga~q~Ph~s~RTL~RtL~yVt~i~~iyglrrSlYeg----------------------FcmsflTlLD~~Sesi--- 815 (4600)
T COG5271 761 LVDGAVQEPHVSGRTLVRTLNYVTNIGEIYGLRRSLYEG----------------------FCMSFLTLLDFVSESI--- 815 (4600)
T ss_pred eccCcCCCcccchHhHHHHHHHHhhhhHHHHHHHHHHHH----------------------HHHHHHHHHHhhHHHH---
Q ss_pred hhhHHHHhhhhccCcccccccccchhhhhhhhhccccccc---cccCCCCCCcCCCCChHHHHHHHHHH----HHHcCCc
Q psy12680 274 FEIWKDIMKTVAADPRVMSVVEIPKLKENLQKCNGLLDMG---ITSDLFPGIELPETDYTILNKAVREV----CEKANLQ 346 (2567)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---ii~DlFP~~~~~~~~~~~l~~ai~~~----~~~~~l~ 346 (2567)
+...+.++..-+-.. |.+..=| .|..+|-.+.-....- .++.---
T Consensus 816 -------------------------l~~~~~kftlg~l~~~~ai~kq~p~---~p~~~yi~f~hyw~~~g~~~veeq~hy 867 (4600)
T COG5271 816 -------------------------LVSLLSKFTLGLLESQNAIEKQKPK---VPDHSYIAFCHYWKHGGSFPVEEQEHY 867 (4600)
T ss_pred -------------------------HHHHHHHHHhcccccchhhhhcCCC---CCCccHHHHHHHHHhcCCCchhhccee
Q ss_pred cChHHHHH--HHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC-cCccccccc
Q psy12680 347 VTPFFLEK--IQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT-MGQLYGQFD 423 (2567)
Q Consensus 347 ~~~~~i~K--v~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait-~~eLyG~~d 423 (2567)
.-.+|++| .--.-.+.-.+.-|.|-|||.||||+.+.-|++-. ..+..+||-.-.| .+|-.|.|-
T Consensus 868 IiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~t------------ghkfVRINNHEHTdlqeYiGTyv 935 (4600)
T COG5271 868 IITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARET------------GHKFVRINNHEHTDLQEYIGTYV 935 (4600)
T ss_pred EecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHh------------CccEEEecCcccchHHHHhhcee
Q ss_pred CCCCC---CCcchHHHHHHHHHhcCCCCceEEEeC----CCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEec
Q psy12680 424 AVSHE---WSDGILAVSYRQFAMSQNENRKWLIFD----GPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEP 496 (2567)
Q Consensus 424 ~~T~E---W~DGvls~i~R~~~~~~~~~~~WivfD----GpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv 496 (2567)
.+... ++.||+--.+|+ -.|||+| .|-|-+ |.||-+|||||-|-.|--+-+-.|-.=-++|-|
T Consensus 936 Tdd~G~lsFkEGvLVeAlR~--------GyWIVLDELNLApTDVL--EaLNRLLDDNRelfIPETqevV~PHp~F~lFAT 1005 (4600)
T COG5271 936 TDDDGSLSFKEGVLVEALRR--------GYWIVLDELNLAPTDVL--EALNRLLDDNRELFIPETQEVVVPHPNFRLFAT 1005 (4600)
T ss_pred ecCCCceeeehhHHHHHHhc--------CcEEEeeccccCcHHHH--HHHHHhhccccceecCCcceeeccCCCeeEEee
Q ss_pred CC--cCcCCcceeeeceeEEecCCCCchhhhHHhhhhcCCCCcccccccccccccccccccccccccCCCcccccchhHH
Q psy12680 497 QD--LEVASPATVSRCGMIYMEPATLGWECLVDSWLNTLPPKVSRCGMIYMEPATLGWECLVDSWLNTLPPKVQEGHRDS 574 (2567)
Q Consensus 497 ~d--L~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (2567)
++ --++----.|| ++=.-+++......++.+.+.
T Consensus 1006 QNppg~YgGRK~LSr--------------------------------------------AFRNRFlE~hFddipedEle~ 1041 (4600)
T COG5271 1006 QNPPGGYGGRKGLSR--------------------------------------------AFRNRFLEMHFDDIPEDELEE 1041 (4600)
T ss_pred cCCCccccchHHHHH--------------------------------------------HHHhhhHhhhcccCcHHHHHH
Q ss_pred H----HHHHHHhhhhHHHHhhccchhhhhhHHHHHHHhhhccccccccccchhHHHHHHHHHHhhccccCCcccccCCCC
Q psy12680 575 L----RQLIMRFCPTILYFLRRTPFARMVDDAMEAYKKKKREEWEMFPTQDSNLIRSLLNLFDTFLDDFNDEKYYETHPS 650 (2567)
Q Consensus 575 l----~~l~~~~~~~~l~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~sl~~l~~~~l~~~~~~~~~~~~~~ 650 (2567)
+ -++...|+..++++.|.......+....+. -|...++-.||.--++....
T Consensus 1042 ILh~rc~iapSyakKiVeVyr~Ls~rRs~~rifeq----------------knsfaTLRDLFrWa~R~avg--------- 1096 (4600)
T COG5271 1042 ILHGRCEIAPSYAKKIVEVYRGLSSRRSINRIFEQ----------------KNSFATLRDLFRWAGRIAVG--------- 1096 (4600)
T ss_pred HHhccCccCHHHHHHHHHHHHHhhhhhhHHHHHHh----------------hhhHHHHHHHHHHhccccch---------
Q ss_pred hhhHHHHHhHHHHHhhhccccccCCCChhhHHHHHHHHhhhcccchhhcccCCCcccCCCCCCCcccccCCCCceeeEEE
Q psy12680 651 LDIRSQLEGIFFFSCIWSMGACLTFETKPHFSNLLYGLMEKEFPASLRESLGLPVELCQPPAKPYLFTVPPQGTVYDYRF 730 (2567)
Q Consensus 651 ~~~~~~~e~~F~fs~iWs~Gg~l~~~~r~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~v~dy~~ 730 (2567)
++.+-.-.+.--.--+=+.+++..-..-+.+.|+- ...-||+|
T Consensus 1097 ------y~qla~~GymllaER~R~~~dkv~V~~v~ekvmkv-------------------------------k~d~d~~y 1139 (4600)
T COG5271 1097 ------YDQLAFLGYMLLAERQRELEDKVRVGQVFEKVMKV-------------------------------KSDEDYKY 1139 (4600)
T ss_pred ------HHHHHHhhHHHHHHHhcCHHhhhhHHHHHHHHHhh-------------------------------hhcchhhh
Q ss_pred eeCCCCcccc-----CccccCCCCCCCCCCCccceeeccchhhhHHHHHHHHHhcCCCeEEecCCCCCccceeehhhhhh
Q psy12680 731 IKEGKGRWKP-----WSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFI 805 (2567)
Q Consensus 731 ~~~~~~~w~~-----W~~~~~~~~~~~~~~~~~~~~VpT~dt~r~~~ll~ll~~~~~pvll~G~~GtGKT~~i~~~~~~~ 805 (2567)
+.-+.-.... | |.-..|...|....+.+..||||||++|||||+.-+.+.
T Consensus 1140 ~smed~slkel~~v~w----------------------t~~m~rl~~lv~~Cl~~kepvlLVgetgcgktt~cqvLa--- 1194 (4600)
T COG5271 1140 DSMEDISLKELSKVVW----------------------TEPMCRLERLVGKCLVTKEPVLLVGETGCGKTTGCQVLA--- 1194 (4600)
T ss_pred hhHhhhhHHhhhhccc----------------------ccchhhhhhHHHHhhcccCceEEEeecCcchhHHHHHHH---
Q ss_pred ccccccccchhhhhhhhhhhccccchhccccccccchhhHHHHHhhhhhhccccch---hhhccccccccccccccccch
Q psy12680 806 KNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEIS---TIVDIGNEENNNSRLRSGFQH 882 (2567)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 882 (2567)
+++.+++ .+++--......++. ..+++-.+.+-..+-.-+++.
T Consensus 1195 -----------~~~~rel-----------------------~~~nahq~Te~gdiigaqrPVrnrse~~y~l~k~l~~a~ 1240 (4600)
T COG5271 1195 -----------DTFRREL-----------------------NLMNAHQETENGDIIGAQRPVRNRSETGYGLTKALDIAS 1240 (4600)
T ss_pred -----------HHHHHHH-----------------------HHHHHhhhccccccccccccchhhhhhhhhHHHHHHHHH
Q ss_pred hhhhhhhcccccccccccccccchhhHHHHHHHhhhcccC------cccCCCCCceeEEEeccCCCCcccccCCCChHHH
Q psy12680 883 FLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRK------GVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEI 956 (2567)
Q Consensus 883 ~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~i~~~lekr~~------~~~gp~~~k~~~~fiDD~nmp~~~~~g~q~~~el 956 (2567)
+..+..+.+.-.-...-=|+. -.++-.++++.+.|.|+ +-..-.+..-=.+.+|.+|++ +.+++|.
T Consensus 1241 nV~~~~didL~e~~~~~ssSd--n~nls~~~e~~I~k~r~lfeW~DGpLV~AMk~GdfFLlDEIsLA------dDSVLER 1312 (4600)
T COG5271 1241 NVFKTRDIDLIEMHRGISSSD--NDNLSFIGESFIFKNRKLFEWKDGPLVKAMKCGDFFLLDEISLA------DDSVLER 1312 (4600)
T ss_pred hhhhhhcchHHHHHhhhcccc--cccHHHHHHHHHHHhhhheeeccchHHHHHhcCCeeEeeecccc------chHHHHH
Q ss_pred HHHhhhc-cccc----cccchhhhhhhhhhhhhccCCCCCC--CCcCcccccccceeeeccCCchhhHHHHHHHHhhhcc
Q psy12680 957 LRQWLDH-WMWY----DRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLD 1029 (2567)
Q Consensus 957 lrQ~~~~-~~~y----d~~~~~~~~~~~~~~~~a~~p~~~~--~~i~~r~~r~f~~~~~~~~~~~~l~~i~~~~l~~~~~ 1029 (2567)
|.-.++- ...| .........-.+-+|.|+|||-|.- .-++|-|...|.-+.+|.+++.. .-||.....-|+.
T Consensus 1313 LNSVLE~~RtL~l~E~g~a~~~vtA~dgF~ffATMNPGGDyGKkELSPALRNRFTEiwvp~m~D~~-d~~~iv~~~l~~~ 1391 (4600)
T COG5271 1313 LNSVLESQRTLYLTETGNAAEEVTAHDGFRFFATMNPGGDYGKKELSPALRNRFTEIWVPVMSDEA-DLIFIVLVDLRFG 1391 (4600)
T ss_pred HHHhhcccceEEEeecCCccceeeeccCceEEEeeCCCCccchhhCCHHHhcccceEeeccccccc-chhhhhhhhhhcC
Q ss_pred cccccccccccCCCCcccCCchhHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhhhhhhhhcccccccchhhhhh
Q psy12680 1030 TRHESCKGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRML 1109 (2567)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1109 (2567)
. ..+.+-+.+..+=.+....-..+..+..+-....+.....+.-.+.+--..+--+.
T Consensus 1392 ~-----------------------vdla~p~ve~~kw~a~~l~~~~vISiRd~l~~VEFIn~~~i~d~~~~l~~~~smvf 1448 (4600)
T COG5271 1392 E-----------------------VDLAKPSVETFKWLARSLLYNDVISIRDLLLIVEFINRREILDLNLVLFNAVSMVF 1448 (4600)
T ss_pred c-----------------------ccccchHHHHHHHHHHHhhccCceeHHHHHHHHHHHHHHHhhhhhhHhhhhhhHHH
Q ss_pred hHHHHHHHhhhcCCCCCCCCCCCCCcccchhHHHHHHHHHhhhccCCccccccccchhhhhHHHHHHHHhhhhhhhhhcC
Q psy12680 1110 SEALQLIEEWSNQGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMDW 1189 (2567)
Q Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 1189 (2567)
.+|++
T Consensus 1449 idalG--------------------------------------------------------------------------- 1453 (4600)
T COG5271 1449 IDALG--------------------------------------------------------------------------- 1453 (4600)
T ss_pred HHHhc---------------------------------------------------------------------------
Q ss_pred CCceeeeeccceehhhHHHHHhcCCCccchhHHhhHHHHHHHHHHHhcCCCccccccccceEEEEecchhhhhhhccCCC
Q psy12680 1190 PGQTVLCVGSAYWTADVHKAIANHPKGLSHYRDVCNAQINKIVEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVSVPV 1269 (2567)
Q Consensus 1190 ~~q~vl~~~~i~wt~~v~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~l~~~~r~~~~~li~~~vh~rdi~~~l~~~~~ 1269 (2567)
..-.-++++....+...++.|--++..+.
T Consensus 1454 --------------~fst~~laen~~dl~s~r~~c~v~l~~L~------------------------------------- 1482 (4600)
T COG5271 1454 --------------EFSTVALAENGLDLESERQRCFVWLEALE------------------------------------- 1482 (4600)
T ss_pred --------------ccchhHHhhcccchhHHHHHHHHHHHHhc-------------------------------------
Q ss_pred CCCchhhhhhhhceeecCCCccccccccCCCCCCCCCCCCCcceeee--------------CchhhHHHHHHHHHHhcCC
Q psy12680 1270 SDENDFQWLCQLRYYAEGKGRWKPWSDDLASAPAIPRDMPVNQIIVT--------------TEETLRNIALMKLLVTHQK 1335 (2567)
Q Consensus 1270 ~~~~~f~w~~qlryy~~~~~~w~~w~~~~~~~~~~~~~~~~~~ilVp--------------T~dT~R~~~ll~~ll~~~~ 1335 (2567)
...-..-..++......++.+-.++-.|| |+-|.-+.--+-..+.-++
T Consensus 1483 ------------------g~~i~~~~~~~n~i~f~d~~~f~g~f~iP~~~~~~S~Ssf~l~spTT~~Nl~rVlRAmqv~k 1544 (4600)
T COG5271 1483 ------------------GAGIKGIEADVNAIYFEDERMFGGDFVIPYLVEHHSSSSFDLESPTTTVNLRRVLRAMQVGK 1544 (4600)
T ss_pred ------------------cCCceeeecccceeEecccceeccccccccccccccCccccccCCchHHhHHHHHHHHhcCC
Q ss_pred CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCccC-
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYG- 1414 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~~g- 1414 (2567)
|+||-|.||.|||.+|++.-...++ .++.||.|-|| .+-++.=+-+-.-++|-|.
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~---------------------kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w 1600 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGK---------------------KLIRINLSEQT---DLCDLFGSDLPVEEGGEFRW 1600 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcC---------------------ceEEeeccccc---hHHHHhCCCCCcccCceeEe
Q ss_pred ------CCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcc--eeeeeeeeeeeeecCC---CCCCCCC
Q psy12680 1415 ------PPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDV--VAVKLIEIQLMCAMGP---PSTGNTV 1483 (2567)
Q Consensus 1415 ------p~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~--~~~~i~diq~v~am~P---pggg~~i 1483 (2567)
.++.+---|..|++|+. +|.++|-|-.++||+|----..+ .|.--.|..+.||-|| .||++-+
T Consensus 1601 ~dapfL~amr~G~WVlLDEiNLa------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgL 1674 (4600)
T COG5271 1601 MDAPFLHAMRDGGWVLLDEINLA------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGL 1674 (4600)
T ss_pred cccHHHHHhhcCCEEEeehhhhh------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccC
Q ss_pred CcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCchhH
Q psy12680 1484 TPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDF 1563 (2567)
Q Consensus 1484 s~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDl 1563 (2567)
+.-|+..|.++.++....+.|..|-. ..|+.-=.+..-+++.-+..+-.++++..+=...-+-..||+||=
T Consensus 1675 PkSF~nRFsvV~~d~lt~dDi~~Ia~---------~~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdT 1745 (4600)
T COG5271 1675 PKSFLNRFSVVKMDGLTTDDITHIAN---------KMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDT 1745 (4600)
T ss_pred CHHHhhhhheEEecccccchHHHHHH---------hhCCccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHH
Q ss_pred HHHHHHHhccchHHHhcHHHHHHHhhhhhhhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q psy12680 1564 ARVIQGVLLSVPEAIESLLSMKRLWVHEVLRVYYDRLVDSDDRLWLFNTLKYTVEKFLQEDMNQLFANLKEANSTEPVGE 1643 (2567)
Q Consensus 1564 srv~qGll~~~~~~i~~~~~l~rLw~HE~~RVF~DRLv~~~D~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1643 (2567)
-||.+=+=.+..-..-+...++...+---+|.-.|| -.-.+-++.+| |+
T Consensus 1746 LRwl~llNq~~~~edvd~~dfid~~V~~r~rtv~dr-------------------~rt~~l~~evf------------g~ 1794 (4600)
T COG5271 1746 LRWLILLNQVGTLEDVDTSDFIDESVVRRMRTVEDR-------------------VRTCELFKEVF------------GD 1794 (4600)
T ss_pred HHHHHHhhccCccccCCHHHHHHHHHHHHhhhHhhh-------------------hHHHHHHHHHh------------cc
Q ss_pred ccccccccccCCCCCcCccCccccCCHHHHHHHHHHHHHHHhccCCCCcccccccccccCCchhHHHHHHhHhHHHHhhh
Q psy12680 1644 YELRNLIYCDFANPKADQRNYMEVTNLEDLRTIVERYLTEFNNMSKKPMNLVLFRGFSKEFDPCIEQLVQATLHIFKESL 1723 (2567)
Q Consensus 1644 ~~~~~llf~~f~~~~~~~~~Y~~v~d~~~l~~~l~~~l~~yN~~~~~~m~LVlF~~~~~~~~~~~~~l~~~~~~i~~~~~ 1723 (2567)
++.+.+-|+ |..+...+-.+..
T Consensus 1795 ~~~r~~~f~----------------------------------------------------------ls~~~~kv~~sv~ 1816 (4600)
T COG5271 1795 YEPRTIGFS----------------------------------------------------------LSSQCFKVGHSVT 1816 (4600)
T ss_pred cCccccccc----------------------------------------------------------chhhHhhcCceEE
Q ss_pred hccCCCCCcccccccchhhHHHHhhhhccccCCCCCCCCCCCccchHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhh
Q psy12680 1724 LNLLPTPTKSHYLFNLRDFARVIQYLTVTGRVGPGPPENSFSKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMI 1803 (2567)
Q Consensus 1724 ~~~~~~~~~~h~~f~lr~~~~vl~~~~~~~rv~~~~~~~~~~~~d~~~l~~al~~~~~~~~l~~~p~~~~ki~ql~~~~~ 1803 (2567)
.+.-. ++|+-.. .+.+....+.-...+-+.+.
T Consensus 1817 vr~~e----------------------------rr~~l~~--------------------~~~~l~sql~vlEsV~~cIn 1848 (4600)
T COG5271 1817 VRMKE----------------------------RRPRLDD--------------------SFVLLHSQLQVLESVMRCIN 1848 (4600)
T ss_pred Eeccc----------------------------cCCCccc--------------------chhhhhhhhHHHHHHHHHHh
Q ss_pred ccccEEEEcCCCCChHHHHHHHHHHHHHHHhhhccCCceEEEEEecccccccc--cccccccccccccccchhHHHHHH
Q psy12680 1804 VRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMG--QLYGQFDAVSHEWSDGILAVSYRQ 1880 (2567)
Q Consensus 1804 ~r~~~lLVG~~GSGK~sl~rlla~~l~~~~~~~~~~~~~v~~~~inpk~is~~--~~Yg~~~~~~~eW~dGil~~~~r~ 1880 (2567)
-.--++|||++|+||+++.|++|.++ |..+...-+|.-.=+++ ..|...|....+|-|.-....+.+
T Consensus 1849 ~nwPlIlvG~t~~GKt~~lRflasI~----------G~~~~~f~~nsDtD~mDllG~Yeq~d~~r~~s~~se~~T~v~~ 1917 (4600)
T COG5271 1849 MNWPLILVGDTGVGKTSLLRFLASIF----------GQEMTLFNCNSDTDVMDLLGQYEQMDNGRFESCDSEVVTSVKE 1917 (4600)
T ss_pred cCCCEEEEcCCCCchHHHHHHHHHHh----------cccceEEeccCCchHHHHhhhHHHhhhhhhhhhhHHHHHHHHh
No 10
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.93 E-value=1.4e-22 Score=261.53 Aligned_cols=961 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred ccCccccCCCCCCCCCCCccceeeccchhhhHHHHHHHHHhcCCCeEEecCCCCCccceeehhhhhhccccccccchhhh
Q psy12680 739 KPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHF 818 (2567)
Q Consensus 739 ~~W~~~~~~~~~~~~~~~~~~~~VpT~dt~r~~~ll~ll~~~~~pvll~G~~GtGKT~~i~~~~~~~~~~~~~~~~~~~~ 818 (2567)
..|..-..-.-...+-+.-.++++||.||.++.-++.-++...+.++++||||+|||.+|
T Consensus 1452 ~~~~~Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM-------------------- 1511 (3164)
T COG5245 1452 TNNGSIAGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLM-------------------- 1511 (3164)
T ss_pred ecccccCCceechhhhcccCCeecccccchhHHHHHHHHHhccceEEEECCCCCccchhc--------------------
Q ss_pred hhhhhhhccccchhccccccccchhhHHHHHhhhhhhccccchhhhccccccccccccccccchhhhhhhhccccccccc
Q psy12680 819 LLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSRLRSGFQHFLLKELSIEQWQPLIM 898 (2567)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (2567)
+..-.+..-+-...+
T Consensus 1512 -----------------------------------------------------------------~~sLrs~~~~ev~~~ 1526 (3164)
T COG5245 1512 -----------------------------------------------------------------CPSLRSELITEVKYF 1526 (3164)
T ss_pred -----------------------------------------------------------------chhhhhhhheeeeEE
Q ss_pred ccccccchhhHHHHHHHhhhcccC----cccCCCCCceeEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhh
Q psy12680 899 NFSAQTSANQTQDIIMSKLDKRRK----GVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVA 974 (2567)
Q Consensus 899 ~fs~~ts~~~~q~~i~~~lekr~~----~~~gp~~~k~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~ 974 (2567)
|||-.|++...-..++...++-+. ..|--|.-|.+|+|+|.+|||..++||+|-.|=+|||++++.|++..--..|
T Consensus 1527 Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~w 1606 (3164)
T COG5245 1527 NFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSW 1606 (3164)
T ss_pred eeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeeccCCccccccCCCceEEeeHHHHHhcccccchhhhH
Q ss_pred hhhhhhhhhhccCCCCCC--CCcCcccccccceeeeccCCchhhHHHHHHHHhhhcccccccccccccCCCCcccCCchh
Q psy12680 975 VKLIEIQLMCAMGPPSTG--NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRHESCKGITSDLFPGIELPETD 1052 (2567)
Q Consensus 975 ~~~~~~~~~~a~~p~~~~--~~i~~r~~r~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (2567)
+.|+++.+++|+|||++- ++.+.||.||=.++++-+|+-.+|.+||...|.+.+.
T Consensus 1607 vTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s~l----------------------- 1663 (3164)
T COG5245 1607 VTICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSYL----------------------- 1663 (3164)
T ss_pred hhhcceEEEccCCCCCCcccCccHHHHhcCceEEEecCcchhhHHHHHHHHHHHHHH-----------------------
Q ss_pred HHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhhhhhhhhcccccccchhhhhhhHHHHHHHhhhcCCCCCCCCCCC
Q psy12680 1053 YTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWSNQGGAPEGPAGT 1132 (2567)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1132 (2567)
|-..=...+..+..--..+|+...-+..+
T Consensus 1664 -----------~~~ef~~~se~~~~aSv~ly~~~k~~~k~---------------------------------------- 1692 (3164)
T COG5245 1664 -----------CFDEFNRLSEETMSASVELYLSSKDKTKF---------------------------------------- 1692 (3164)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------------------------
Q ss_pred CCcccchhHHHHHHHHHhhhccCCccccccccchhhhhHHHHHHHHhhhhhhhhhcCCCceeeeeccceehhhHHHHHhc
Q psy12680 1133 GKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMDWPGQTVLCVGSAYWTADVHKAIAN 1212 (2567)
Q Consensus 1133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~q~vl~~~~i~wt~~v~~~~~~ 1212 (2567)
T Consensus 1693 -------------------------------------------------------------------------------- 1692 (3164)
T COG5245 1693 -------------------------------------------------------------------------------- 1692 (3164)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred CCCccchhHHhhHHHHHHHHHHHhcCCCccccccccceEEEEecchhhhhhhccCCCCCCchhhhhhhhceeecCCCccc
Q psy12680 1213 HPKGLSHYRDVCNAQINKIVEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVSVPVSDENDFQWLCQLRYYAEGKGRWK 1292 (2567)
Q Consensus 1213 ~~~~l~~~~~~~~~~l~~l~~~~~~~l~~~~r~~~~~li~~~vh~rdi~~~l~~~~~~~~~~f~w~~qlryy~~~~~~w~ 1292 (2567)
T Consensus 1693 -------------------------------------------------------------------------------- 1692 (3164)
T COG5245 1693 -------------------------------------------------------------------------------- 1692 (3164)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred cccccCCCCCCCCCCCCCcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhh
Q psy12680 1293 PWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFL 1372 (2567)
Q Consensus 1293 ~w~~~~~~~~~~~~~~~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~l 1372 (2567)
T Consensus 1693 -------------------------------------------------------------------------------- 1692 (3164)
T COG5245 1693 -------------------------------------------------------------------------------- 1692 (3164)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred hhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcc
Q psy12680 1373 LKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHW 1452 (2567)
Q Consensus 1373 l~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~ 1452 (2567)
T Consensus 1693 -------------------------------------------------------------------------------- 1692 (3164)
T COG5245 1693 -------------------------------------------------------------------------------- 1692 (3164)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred cccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHH
Q psy12680 1453 MWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQL 1532 (2567)
Q Consensus 1453 g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~l 1532 (2567)
...|+..+.++ ..+|.+|.|....=..|+...+.-|--=+.++.-
T Consensus 1693 ------------------~lq~~y~y~pR-eLtR~lr~i~~yaeT~~~t~~~slI~~wy~ea~r---------------- 1737 (3164)
T COG5245 1693 ------------------FLQMNYGYKPR-ELTRSLRAIFGYAETRIDTPDVSLIIDWYCEAIR---------------- 1737 (3164)
T ss_pred ------------------hcccccccChH-HHHHHHHHHHhHHhcCCCCCcHHHHHHHHHHHHH----------------
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhccchHHHhcHHHH---------HHHhhhhhhhhhcccccCc
Q psy12680 1533 VQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLSVPEAIESLLSM---------KRLWVHEVLRVYYDRLVDS 1603 (2567)
Q Consensus 1533 v~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~~~~~~i~~~~~l---------~rLw~HE~~RVF~DRLv~~ 1603 (2567)
+.+++-+.+.=-.|..+-||.|.+|++-.-..|......-.+.....+ ++.++.|-.|.|+|-=.+.
T Consensus 1738 ----~~~dRLV~qkE~st~~q~ly~~~~~~~~e~~~g~i~e~~I~fS~Il~~g~~~l~k~dl~~fvEe~~K~F~sshl~v 1813 (3164)
T COG5245 1738 ----EKIDRLVQQKESSTSRQDLYDFGLRAIREMIAGHIGEAEITFSMILFFGMACLLKKDLAVFVEEVRKIFGSSHLDV 1813 (3164)
T ss_pred ----HHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHhccHHHHhhhhHHHHHHHHHHHhcccCCCC
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccccccccccCCCCCcCccCccccCCHHHHHHHHHHHHHH
Q psy12680 1604 DDRLWLFNTLKYTVEKFLQEDMNQLFANLKEANSTEPVGEYELRNLIYCDFANPKADQRNYMEVTNLEDLRTIVERYLTE 1683 (2567)
Q Consensus 1604 ~D~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf~~f~~~~~~~~~Y~~v~d~~~l~~~l~~~l~~ 1683 (2567)
+
T Consensus 1814 ~------------------------------------------------------------------------------- 1814 (3164)
T COG5245 1814 E------------------------------------------------------------------------------- 1814 (3164)
T ss_pred c-------------------------------------------------------------------------------
Q ss_pred HhccCCCCcccccccccccCCchhHHHHHHhHhHHHHhhhhccCCCCCcccccccchhhHHHHhhhhccccCCCCCCCCC
Q psy12680 1684 FNNMSKKPMNLVLFRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQYLTVTGRVGPGPPENS 1763 (2567)
Q Consensus 1684 yN~~~~~~m~LVlF~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~h~~f~lr~~~~vl~~~~~~~rv~~~~~~~~ 1763 (2567)
+|..+ ++..|++|.. |.+..|-.|...++-+..|.
T Consensus 1815 ----------~V~~~--------------~~l~HiLr~~-----------------R~l~~vggh~~l~g~~~~g~---- 1849 (3164)
T COG5245 1815 ----------AVAYK--------------DALLHILRSR-----------------RGLLVVGGHGVLKGVLIRGA---- 1849 (3164)
T ss_pred ----------eeeeH--------------HHHHHHHHHH-----------------HHHHHhccchhhhhhhhhhh----
Q ss_pred CCccchHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhhccccEEEEcCCCCChHHHHHHHHHHHHHHHhhhccCCceE
Q psy12680 1764 FSKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKV 1843 (2567)
Q Consensus 1764 ~~~~d~~~l~~al~~~~~~~~l~~~p~~~~ki~ql~~~~~~r~~~lLVG~~GSGK~sl~rlla~~l~~~~~~~~~~~~~v 1843 (2567)
.++.+-+|=-+
T Consensus 1850 ---------~~~~efvcwlN------------------------------------------------------------ 1860 (3164)
T COG5245 1850 ---------CDAREFVCWLN------------------------------------------------------------ 1860 (3164)
T ss_pred ---------HHHHHHHHHhC------------------------------------------------------------
Q ss_pred EEEEecccccccccccccccccccccccchhHHHHHHHhhhcccCCeEEeecC-CcchHHHhhhhhhHHHHHHHHhhhc-
Q psy12680 1844 EIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQNENRKWLIFDG-PVDAIWIENMNSVLDDNKKLCLMSG- 1921 (2567)
Q Consensus 1844 ~~~~inpk~is~~~~Yg~~~~~~~eW~dGil~~~~r~~~~~~~~~~~~iv~Dg-~~d~~wie~ln~~ldD~k~l~l~~G- 1921 (2567)
...+-+.+|.-+..+.+|.|.+.....+ +...+...-|+++|+ ++.+.|+|.+|.+|++++.+|+-+|
T Consensus 1861 --------~~~m~e~~~hr~~~~~Df~d~lk~~~~~--~~~~~~r~Cl~I~Esi~~es~fLe~~N~LL~n~~~~~lf~gn 1930 (3164)
T COG5245 1861 --------PRNMREIFGHRDELTGDFRDSLKVQDLR--RNIHGGRECLFIFESIPVESSFLEDFNPLLDNNRFLCLFSGN 1930 (3164)
T ss_pred --------ccchhhhhcccccchhhHHHHHHHHHHh--ccccCCceEEEEecCCccchHHHHHhhhhhhccccchhccch
Q ss_pred cccccCCceEEEeccccccccCCccccchhhHhhhhhc----------------------cCCCccC---CCCChhHHHH
Q psy12680 1922 EIIALAPTTSLIFEPQDLEVASPATITDESMVEDLSNL----------------------LNSGEVP---NIFASDEKAE 1976 (2567)
Q Consensus 1922 e~i~~~~~~~life~q~L~~aS~a~I~~e~fLE~iN~l----------------------L~sGevP---~Lf~~dE~~~ 1976 (2567)
|++..+.+.+.+||.+.|..-|++++.+--+.+---|+ |-+-++| ++|+.+++.+
T Consensus 1931 e~~~I~~nlr~~~es~~L~~dTe~tlt~vFl~~~~~Nl~vVFs~c~s~d~~~~a~i~spal~nrc~id~~~~wdt~~msq 2010 (3164)
T COG5245 1931 ERIRIPENLRFVFESTSLEKDTEATLTRVFLVYMEENLPVVFSACCSQDTSVLAGIRSPALKNRCFIDFKKLWDTEEMSQ 2010 (3164)
T ss_pred hHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHhcCCeEEEEecCCCchHhhccCCHHHhhhhhhhhhhhccHHHHHH
Q ss_pred HHHhhchhhhhhhccCCCcccHH-----HHhHhhhC--------------------------------------------
Q psy12680 1977 ICEKMGVIDRQKDKSMQTDGTMM-----ALFKFFVD-------------------------------------------- 2007 (2567)
Q Consensus 1977 i~~~~~~~~~~~~~~~~~~~~~~-----~l~~~fv~-------------------------------------------- 2007 (2567)
+.+++-+..+..+...-..+... ..+.-|+.
T Consensus 2011 ~An~V~~~s~~~~~v~~in~el~~~kg~~i~~~~~~~~vv~~~r~f~~~m~~Gs~~~s~~~fI~gl~~~~~~~~~~~~~l 2090 (3164)
T COG5245 2011 YANSVETLSRDGGRVFFINGELGVGKGALISEVFGDDAVVIEGRGFEISMIEGSLGESKIKFIGGLKVYDARCVIYIEEL 2090 (3164)
T ss_pred HHhhhhheeecCCcccccccccccCcchhhHHHHhhhheeecccceEEEeeeccCccCcceeecchHHHHHHHHHHHHHh
Q ss_pred --------------------------------------------------------------------------------
Q psy12680 2008 -------------------------------------------------------------------------------- 2007 (2567)
Q Consensus 2008 -------------------------------------------------------------------------------- 2007 (2567)
T Consensus 2091 ~~~~~~l~~g~~K~nE~~~g~~elke~Ls~~~~il~~keK~a~d~L~~~~~er~e~E~K~v~~e~~~~~l~~~ee~vrkr 2170 (3164)
T COG5245 2091 DCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLEREVKSVFVEAPRDMLFLLEEEVRKR 2170 (3164)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHhcceeeeeecccccchhhhcChhhHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Q ss_pred --------------------------------------------------------------------------------
Q psy12680 2008 -------------------------------------------------------------------------------- 2007 (2567)
Q Consensus 2008 -------------------------------------------------------------------------------- 2007 (2567)
T Consensus 2171 k~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLgf~a~~w~~~qQ~LrrDDfi~~i~~y 2250 (3164)
T COG5245 2171 KGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAKIWFGEQQSLRRDDFIRIIGKY 2250 (3164)
T ss_pred hhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcCCcccceeeHHHHHHHhcchhHHhhhHHHHhhhhhHHHHhccC
Q ss_pred ---CCCcHHHHHHHHHHhcccCCCCHHHHHHHHhhhhhhhhhhhhhhHHH---------HHHcCCccccCchhHHHHHHH
Q psy12680 2008 ---TPWPPDALLAVATRFLNEVELSEAERQISIDMCQNFHVSTQNLSDEF---------LVKTSRHVYVTPTSYLELIST 2075 (2567)
Q Consensus 2008 ---~~Wp~eAL~~VA~~~L~~~~~~~~~~~~~~~~~~~~H~sv~~~s~~~---------~~~~~r~~yvTP~syL~~l~~ 2075 (2567)
-+..-++-.-.-.+|+++....-..-.....+|.-.-+=+...+..- .++.+|--.- ...==+-|..
T Consensus 2251 ~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~cn~skvLE~~~plr~E~kRI~~E-~~~~e~~L~~ 2329 (3164)
T COG5245 2251 PDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKVLEVKIPLREEEKRIDGE-AFLVEDRLTL 2329 (3164)
T ss_pred CceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHhhHHHhhhhcccchhHHHhhhhH-HhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------------------------------------
Q psy12680 2076 FKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEI---------------------------------------- 2115 (2567)
Q Consensus 2076 f~~ll~~k~~el~~~~~rl~~GL~KL~ea~~~V~~l~~~L---------------------------------------- 2115 (2567)
=+.+.+.--..+...++.|..-+...+.-..+-++-++.+
T Consensus 2330 ~~~~s~dl~~~~l~~r~~YSl~I~~Vh~~~~~md~v~~~~~rsi~v~~~l~~e~~ew~g~~~~~pk~m~eL~g~~~~sS~ 2409 (3164)
T COG5245 2330 GKGLSSDLMTFKLRRRSYYSLDILRVHGKIADMDTVHKDVLRSIFVSEILINEDSEWGGVFSEVPKLMVELDGDGHPSSC 2409 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHhhhhceeeeeecceecccccchHhhccHHHHHhhcCCcchhe
Q ss_pred -----------------HhhchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-------
Q psy12680 2116 -----------------EYLQPFLM--------VSAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQALA------- 2163 (2567)
Q Consensus 2116 -----------------~~~qp~L~--------~~~~~~~~~~~~le~~~~~a~~~~~~v~~~~~~~~e~~~~------- 2163 (2567)
....|.+. .-.+-+++.++..++-+.++...--.++......+-|..-
T Consensus 2410 ~~~y~g~l~~~~Ra~~~~~~~~~Is~~F~~k~~~~r~fI~~~Vq~~e~~K~~~c~tDy~lEN~~i~~~~qd~~~~L~dps 2489 (3164)
T COG5245 2410 LHPYIGTLGFLCRAIEFGMSFIRISKEFRDKEIRRRQFITEGVQKIEDFKEEACSTDYGLENSRIRKDLQDLTAVLNDPS 2489 (3164)
T ss_pred eeeeeccccHHHHHHHHhhhHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhcchhcchhhHHHhhccccHhHhcCcH
Q ss_pred ------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCChHHHHHH
Q psy12680 2164 ------AQAMKSVAEGVKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLV 2237 (2567)
Q Consensus 2164 ------~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~PP~~V~~V 2237 (2567)
...+-.-++.+--.-.+...+....++++.-....+..|+-...+-..-++-.-+...+|++.+-+||..++..
T Consensus 2490 s~ivt~~~~~y~~kkail~sf~e~~f~~~L~~a~r~gs~~iI~daE~~d~~i~rlIk~ef~s~~~eV~v~i~~~eI~~S~ 2569 (3164)
T COG5245 2490 SKIVTSQRQMYDEKKAILGSFREMEFAFGLSQARREGSDKIIGDAEALDEEIGRLIKEEFKSNLSEVKVMINPPEIVRST 2569 (3164)
T ss_pred HHHHHhhHHHhccchhhhhhhhhHHHHHHHHHHHHhccceEecchhhhhhhhhhhhhHHHhcCCceEEEEECCCeeEEec
Q ss_pred HHHHHHHhcCCCCCcCCCCCCcccCCcHHHHhhhcchhhHhhhhccCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHhHh
Q psy12680 2238 MKAVCILKGVKSERVPDAGGQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTA 2317 (2567)
Q Consensus 2238 meaVciLlg~~~~~~~~~~~~~~~~~W~~ak~~L~~~~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~A 2317 (2567)
-++|-++-..+....+... |+-+.+++ |..++..... .|++.++...+. |-|..+..--+++|
T Consensus 2570 ~~~vf~~se~~Sgdm~~~~-------~k~l~~v~----Fvs~v~~~ET-~i~d~~~~~~~~-----~lf~~~~~l~~lk~ 2632 (3164)
T COG5245 2570 VEAVFWLSEGRSGDMGSIE-------WKQLIQVM----FVSKVLGCET-EIPDALEKLVSG-----PLFVHEKALNALKA 2632 (3164)
T ss_pred ceeEEEEeecCCCchhHHH-------HHHhHhhh----eehhhhhhhh-hhhHHHHhhhcc-----chhhhHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2318 AEGLCKWVIAICKYDKVAKIVGPKKE--ALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELD 2395 (2567)
Q Consensus 2318 a~~Lc~WV~A~~~Y~~V~~~V~Pk~~--~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~ 2395 (2567)
|+.|..|+.|=+.|.++.-...|..+ ++..+...|++.....+++..+..+++.++.+|..+|....+.-..+.-+++
T Consensus 2633 ~~~l~L~~L~~~ll~~L~~s~~nm~~tDEI~vll~NlKk~~~~Ie~~~sEs~ei~~riD~L~~eY~~svk~~~sI~v~~~ 2712 (3164)
T COG5245 2633 CGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEEESESMEIEDRIDALKSEYNASVKRLESIRVEIA 2712 (3164)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhcchhHHHH
Q psy12680 2396 LCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDVLI 2438 (2567)
Q Consensus 2396 ~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~l~GD~ll 2438 (2567)
.--.+----..-|.-|.+|-+||-.....+-..+..++-.|+.
T Consensus 2713 ~F~~~~~~y~~si~~~~s~f~k~~~~KS~~~~a~R~~l~~~~w 2755 (3164)
T COG5245 2713 MFDEKALMYNKSICELSSEFEKWRRMKSKYLCAIRYMLMSSEW 2755 (3164)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
No 11
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.88 E-value=2.9e-19 Score=231.18 Aligned_cols=900 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHH---------------HHhhhhhhhcCccccccccccCCchhHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGL---------------GKFFKGLIATGAWACFDEFNRIDVEVLS 70 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m---------------~rif~Gl~q~GaW~CFDEfNri~~~vLS 70 (2567)
+||+.||||..++.||+-.|.-+|-.|--|..|.+-. --.+.|...-|-|..+||.|--+.+||-
T Consensus 894 QGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLE 973 (4600)
T COG5271 894 QGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLE 973 (4600)
T ss_pred ecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHH
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeE-EEeeCceeEEEEeCC--CCCCCCCchhhHhhccccccccCCCHHHHHHHHHHh
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTI-LKLDRTCSVFITMNP--GYAGRSELPDNLKSLFRTVAMMVPDYALISEIIVKK 147 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~-i~l~~~~~iFiTmNP--gYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L~~ 147 (2567)
|+-..+. .+..-|.=+..+ +.-+|++-+|.|-|| ||+||--|-...+.-|=.+..-----.-+-+|+-
T Consensus 974 aLNRLLD-------DNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ILh-- 1044 (4600)
T COG5271 974 ALNRLLD-------DNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEILH-- 1044 (4600)
T ss_pred HHHHhhc-------cccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHHHh--
Q ss_pred hhchHHHHHHHHHHHHHhhhhhhhhhcccC-hhhhHHHHHHHHHHHHHHhhhccCCCCcchhhhhhhhHHHHhhhcchhh
Q psy12680 148 LAPYKQLYDNCIEYQEKHKMWAESIVGTFD-PEQIEEETNEFYKNIYKLKLQFSHLPGPYGIASKVLDQVQEFKEHMPII 226 (2567)
Q Consensus 148 ~~~~~~Ly~~~~~~~~~~~~~~~~i~~~~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vl~~~~~~k~~~~~~ 226 (2567)
+--. +.+.++++++.|+.+.- -|..+++..+-..|
T Consensus 1045 --------------------------~rc~iapSyakKiVeVyr~Ls~-----------rRs~~rifeqknsf------- 1080 (4600)
T COG5271 1045 --------------------------GRCEIAPSYAKKIVEVYRGLSS-----------RRSINRIFEQKNSF------- 1080 (4600)
T ss_pred --------------------------ccCccCHHHHHHHHHHHHHhhh-----------hhhHHHHHHhhhhH-------
Q ss_pred hhccCCCcccchhhhhhhccCCCCCchhhhhHHHHHHhhccccccchhhhHHHHhhhhccCcccccccccchhhhhhhhh
Q psy12680 227 QTLGNPGLQLRHWEKISEVVGFPLSPEMEDFTLQRIFNYGLEEYVPKFEIWKDIMKTVAADPRVMSVVEIPKLKENLQKC 306 (2567)
Q Consensus 227 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 306 (2567)
.++...+.|+.+.-+--=..+..-+-.+++..|-..
T Consensus 1081 ------------------------------aTLRDLFrWa~R~avgy~qla~~GymllaER~R~~~-------------- 1116 (4600)
T COG5271 1081 ------------------------------ATLRDLFRWAGRIAVGYDQLAFLGYMLLAERQRELE-------------- 1116 (4600)
T ss_pred ------------------------------HHHHHHHHHhccccchHHHHHHhhHHHHHHHhcCHH--------------
Q ss_pred ccccccccccCCCCCCcCCCCChHHHHHHHHHHHHHcCCccChH-HHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHH
Q psy12680 307 NGLLDMGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPF-FLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRML 385 (2567)
Q Consensus 307 ~~~~~~~ii~DlFP~~~~~~~~~~~l~~ai~~~~~~~~l~~~~~-~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L 385 (2567)
+.+.-...+..+|---...+--|+.++ ....++.+-..+.. .+.=-.-..-.+....-|.|||.+||||||...+|
T Consensus 1117 dkv~V~~v~ekvmkvk~d~d~~y~sme---d~slkel~~v~wt~~m~rl~~lv~~Cl~~kepvlLVgetgcgktt~cqvL 1193 (4600)
T COG5271 1117 DKVRVGQVFEKVMKVKSDEDYKYDSME---DISLKELSKVVWTEPMCRLERLVGKCLVTKEPVLLVGETGCGKTTGCQVL 1193 (4600)
T ss_pred hhhhHHHHHHHHHhhhhcchhhhhhHh---hhhHHhhhhcccccchhhhhhHHHHhhcccCceEEEeecCcchhHHHHHH
Q ss_pred HHHHHHH---------------------------HHhcccCCccEEEEEeccCCCCcCcccccccCCC------------
Q psy12680 386 SEALQLI---------------------------EEWGELGEHKVEIIVINPKSITMGQLYGQFDAVS------------ 426 (2567)
Q Consensus 386 ~~Al~~l---------------------------~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T------------ 426 (2567)
++.+.+. -.++....-.....+.+..-+++.|++-.+....
T Consensus 1194 a~~~~rel~~~nahq~Te~gdiigaqrPVrnrse~~y~l~k~l~~a~nV~~~~didL~e~~~~~ssSdn~nls~~~e~~I 1273 (4600)
T COG5271 1194 ADTFRRELNLMNAHQETENGDIIGAQRPVRNRSETGYGLTKALDIASNVFKTRDIDLIEMHRGISSSDNDNLSFIGESFI 1273 (4600)
T ss_pred HHHHHHHHHHHHHhhhccccccccccccchhhhhhhhhHHHHHHHHHhhhhhhcchHHHHHhhhcccccccHHHHHHHHH
Q ss_pred ------CCCCcchHHHHHHHHHhcCCCCceEEEeCCCC--CHHHHHHHHhhhcCCceeEec-cc---ceeecCCCCeEEE
Q psy12680 427 ------HEWSDGILAVSYRQFAMSQNENRKWLIFDGPV--DAIWIENMNSVLDDNKKLCLM-SG---EIIALAPTTSLIF 494 (2567)
Q Consensus 427 ------~EW~DGvls~i~R~~~~~~~~~~~WivfDGpV--Da~WIEnLNSVLDDNK~LtL~-nG---ErI~l~~~~~llF 494 (2567)
-||+||-+-..||. -....+|--- |-.=.|-|||||.-.|+|+|+ -| +-+.-.++.+|+=
T Consensus 1274 ~k~r~lfeW~DGpLV~AMk~--------GdfFLlDEIsLAdDSVLERLNSVLE~~RtL~l~E~g~a~~~vtA~dgF~ffA 1345 (4600)
T COG5271 1274 FKNRKLFEWKDGPLVKAMKC--------GDFFLLDEISLADDSVLERLNSVLESQRTLYLTETGNAAEEVTAHDGFRFFA 1345 (4600)
T ss_pred HHhhhheeeccchHHHHHhc--------CCeeEeeeccccchHHHHHHHHhhcccceEEEeecCCccceeeeccCceEEE
Q ss_pred ecC-----CcCcCCcceeeeceeEEecCCCCchhhhHHhhhhcCCCCcccccccccccccccccccccccccCCCccccc
Q psy12680 495 EPQ-----DLEVASPATVSRCGMIYMEPATLGWECLVDSWLNTLPPKVSRCGMIYMEPATLGWECLVDSWLNTLPPKVQE 569 (2567)
Q Consensus 495 Ev~-----dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (2567)
-+. -=...|||.=-|-.=||+ |.-..-.+++---+.++......
T Consensus 1346 TMNPGGDyGKkELSPALRNRFTEiwv-p~m~D~~d~~~iv~~~l~~~~vd------------------------------ 1394 (4600)
T COG5271 1346 TMNPGGDYGKKELSPALRNRFTEIWV-PVMSDEADLIFIVLVDLRFGEVD------------------------------ 1394 (4600)
T ss_pred eeCCCCccchhhCCHHHhcccceEee-cccccccchhhhhhhhhhcCccc------------------------------
Q ss_pred chhHHHHHHHHHhhhhHHHHhhccchhhhhhHHHHHHHhhhccccccccccchhHHHHHHHHHHhhccccCCcccccCCC
Q psy12680 570 GHRDSLRQLIMRFCPTILYFLRRTPFARMVDDAMEAYKKKKREEWEMFPTQDSNLIRSLLNLFDTFLDDFNDEKYYETHP 649 (2567)
Q Consensus 570 ~~~~~l~~l~~~~~~~~l~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~sl~~l~~~~l~~~~~~~~~~~~~ 649 (2567)
....+...++++-...++- .|+...++-++.-+.+-.+.+ ..
T Consensus 1395 -la~p~ve~~kw~a~~l~~~-------------------------~vISiRd~l~~VEFIn~~~i~------------d~ 1436 (4600)
T COG5271 1395 -LAKPSVETFKWLARSLLYN-------------------------DVISIRDLLLIVEFINRREIL------------DL 1436 (4600)
T ss_pred -ccchHHHHHHHHHHHhhcc-------------------------CceeHHHHHHHHHHHHHHHhh------------hh
Q ss_pred ChhhHHHHHhHHHHHhhhccccccCCCChhhHH------HHHHHHhhhcccchhhcccCCCcccCCCCCCCccccc---C
Q psy12680 650 SLDIRSQLEGIFFFSCIWSMGACLTFETKPHFS------NLLYGLMEKEFPASLRESLGLPVELCQPPAKPYLFTV---P 720 (2567)
Q Consensus 650 ~~~~~~~~e~~F~fs~iWs~Gg~l~~~~r~~F~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p 720 (2567)
...+-......|+=|+-=--|..|.+++-..=+ .++.++........-...-.+.++.-..-.+-+.+.+ -
T Consensus 1437 ~~~l~~~~smvfidalG~fst~~laen~~dl~s~r~~c~v~l~~L~g~~i~~~~~~~n~i~f~d~~~f~g~f~iP~~~~~ 1516 (4600)
T COG5271 1437 NLVLFNAVSMVFIDALGEFSTVALAENGLDLESERQRCFVWLEALEGAGIKGIEADVNAIYFEDERMFGGDFVIPYLVEH 1516 (4600)
T ss_pred hhHhhhhhhHHHHHHhcccchhHHhhcccchhHHHHHHHHHHHHhccCCceeeecccceeEecccceecccccccccccc
Q ss_pred CCCceeeEEEeeCCCCccccCccccCCCCCCCCCCCccceeeccchhhhHHHHHHHHHhcCCCeEEecCCCCCccceeeh
Q psy12680 721 PQGTVYDYRFIKEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITV 800 (2567)
Q Consensus 721 ~~g~v~dy~~~~~~~~~w~~W~~~~~~~~~~~~~~~~~~~~VpT~dt~r~~~ll~ll~~~~~pvll~G~~GtGKT~~i~~ 800 (2567)
...+-||+. |+-|.-+..=+=-..+-++|+||-|.||+|||++|+.
T Consensus 1517 ~S~Ssf~l~----------------------------------spTT~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlIta 1562 (4600)
T COG5271 1517 HSSSSFDLE----------------------------------SPTTTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITA 1562 (4600)
T ss_pred ccCcccccc----------------------------------CCchHHhHHHHHHHHhcCCceeecCCCCccHHHHHHH
Q ss_pred hhhhhccccccccchhhhhhhhhhhccccchhccccccccchhhHHHHHhhhhhhccccchhhhcccccccccccccccc
Q psy12680 801 SILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSRLRSGF 880 (2567)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (2567)
+-..+-+
T Consensus 1563 LAr~tG~------------------------------------------------------------------------- 1569 (4600)
T COG5271 1563 LARKTGK------------------------------------------------------------------------- 1569 (4600)
T ss_pred HHHHhcC-------------------------------------------------------------------------
Q ss_pred chhhhhhhhcccccccccccccccchhhHHHHHHHhhhcccCcccCCCCC-------ceeEEEeccCCCCcccccCCCCh
Q psy12680 881 QHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLG-------KRCVVFVDDVNMPLKEEFGAQPP 953 (2567)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~i~~~lekr~~~~~gp~~~-------k~~~~fiDD~nmp~~~~~g~q~~ 953 (2567)
+..+||.|-|| .+-++..+.+---+|+-|..... +---|.+|.+|++ +|++
T Consensus 1570 -------------kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa------SQSV 1627 (4600)
T COG5271 1570 -------------KLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA------SQSV 1627 (4600)
T ss_pred -------------ceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh------HHHH
Q ss_pred HHHHHHhhhc--cccccccchhhhhhhhhhhhhccCC--CCCC-CCcCcccccccceeeeccCCchhhHHHHHHHHhhhc
Q psy12680 954 IEILRQWLDH--WMWYDRKDVVAVKLIEIQLMCAMGP--PSTG-NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHL 1028 (2567)
Q Consensus 954 ~ellrQ~~~~--~~~yd~~~~~~~~~~~~~~~~a~~p--~~~~-~~i~~r~~r~f~~~~~~~~~~~~l~~i~~~~l~~~~ 1028 (2567)
+|=|..-+|| ..+.-.-+..+.-=.|...-||-|| .||| ..++..|...|.++.+.--..+++..|-..+.
T Consensus 1628 lEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~y---- 1703 (4600)
T COG5271 1628 LEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIANKMY---- 1703 (4600)
T ss_pred HHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchHHHHHHhhC----
Q ss_pred ccccccccccccCCCCcccCCchhHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhhhhhhhhcccccccchhhhh
Q psy12680 1029 DTRHESCKGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 1108 (2567)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (2567)
-|+.+.|..|+.++-.++. +.+...-.-|+.+|.---+
T Consensus 1704 ----------------------------------------p~v~~d~~~kiik~ms~lq--d~i~k~~~~g~~gsPwefn 1741 (4600)
T COG5271 1704 ----------------------------------------PQVNEDWRLKIIKFMSRLQ--DNIEKDISFGSFGSPWEFN 1741 (4600)
T ss_pred ----------------------------------------CccChHHHHHHHHHHHHHH--HhhhhhhcccCCCCCeEEe
Q ss_pred hhHHHHHHHhhhcCCCCCCCCCCCCCcccchhHHHHHHHHHhhhccCCccccccccchhhhhHHHHHHHHhhhhhhhhhc
Q psy12680 1109 LSEALQLIEEWSNQGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMD 1188 (2567)
Q Consensus 1109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 1188 (2567)
|.+++.-+.--++.+...+......-...+....+-+...
T Consensus 1742 lrdTLRwl~llNq~~~~edvd~~dfid~~V~~r~rtv~dr---------------------------------------- 1781 (4600)
T COG5271 1742 LRDTLRWLILLNQVGTLEDVDTSDFIDESVVRRMRTVEDR---------------------------------------- 1781 (4600)
T ss_pred hHHHHHHHHHhhccCccccCCHHHHHHHHHHHHhhhHhhh----------------------------------------
Q ss_pred CCCceeeeeccceehhhHHHHHhcCCCccchhHHhhHHHHHHHHHHHhcCCCccccc--------cccceEEEEecchhh
Q psy12680 1189 WPGQTVLCVGSAYWTADVHKAIANHPKGLSHYRDVCNAQINKIVEIVRGKLPPQTRI--------TLGALVVIDVHARDV 1260 (2567)
Q Consensus 1189 ~~~q~vl~~~~i~wt~~v~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~l~~~~r~--------~~~~li~~~vh~rdi 1260 (2567)
..-+.++.-+-|+..+..-- ++++-++..
T Consensus 1782 -------------------------------------~rt~~l~~evfg~~~~r~~~f~ls~~~~kv~~sv~vr------ 1818 (4600)
T COG5271 1782 -------------------------------------VRTCELFKEVFGDYEPRTIGFSLSSQCFKVGHSVTVR------ 1818 (4600)
T ss_pred -------------------------------------hHHHHHHHHHhcccCcccccccchhhHhhcCceEEEe------
Q ss_pred hhhhccCCCCCCchhhhhhhhceeecCCCccccccccCCCCCCCCCCCCCcceeeeCchhhHHHHHHHHHHhcCCCcccc
Q psy12680 1261 VVHLVSVPVSDENDFQWLCQLRYYAEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFI 1340 (2567)
Q Consensus 1261 ~~~l~~~~~~~~~~f~w~~qlryy~~~~~~w~~w~~~~~~~~~~~~~~~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~ 1340 (2567)
.....-+..+-++|----+...-.+-..+.++.|.+++
T Consensus 1819 ------------------------------------------~~err~~l~~~~~~l~sql~vlEsV~~cIn~nwPlIlv 1856 (4600)
T COG5271 1819 ------------------------------------------MKERRPRLDDSFVLLHSQLQVLESVMRCINMNWPLILV 1856 (4600)
T ss_pred ------------------------------------------ccccCCCcccchhhhhhhhHHHHHHHHHHhcCCCEEEE
Q ss_pred cCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHh
Q psy12680 1341 GPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMS 1403 (2567)
Q Consensus 1341 GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies 1403 (2567)
||+|+|||+++ +|+.+-+-. ....+|+++.|.+..+.-.-|+
T Consensus 1857 G~t~~GKt~~l------------------RflasI~G~---~~~~f~~nsDtD~mDllG~Yeq 1898 (4600)
T COG5271 1857 GDTGVGKTSLL------------------RFLASIFGQ---EMTLFNCNSDTDVMDLLGQYEQ 1898 (4600)
T ss_pred cCCCCchHHHH------------------HHHHHHhcc---cceEEeccCCchHHHHhhhHHH
No 12
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.80 E-value=3.9e-20 Score=218.34 Aligned_cols=85 Identities=56% Similarity=0.950 Sum_probs=67.9
Q ss_pred ccCCHHHHHHHHhCCCCCCchhhhhHHHhhcCCCcceeecCchhHHHHHHhhhccCCCeEEECCChhhHHHHHHHHhcCC
Q psy12680 2481 VMGNPVEIRAWNIFGLPCDSFSIDNGIIIKNSRRWPLMIDPQEQANKWIKNMEKANGLNVIRLSNTDYMRILEGAIGFGF 2560 (2567)
Q Consensus 2481 ~L~~~~~i~~W~~~GLP~D~~SiENaiIi~~s~r~PLlIDPq~Qa~~Wik~~~~~~~l~v~~~~~~~f~~~LE~ai~~G~ 2560 (2567)
+|+|+.++++|+.+|||+|++|+|||+|+.+|.||||+||||+||++||+++++ +++.|+++++++|+++||+|||||+
T Consensus 1 ~L~d~~~i~~W~~~GLP~D~~siENa~i~~~~~r~PLiIDPq~qa~~wi~~~~~-~~l~v~~~~~~~~~~~le~air~G~ 79 (228)
T PF12781_consen 1 MLSDDVEIRQWISQGLPSDQLSIENAIILKNSRRWPLIIDPQGQANKWIKNMYK-NDLEVTSFSDSNFLKQLENAIRFGK 79 (228)
T ss_dssp ---------HHHHCT--SSHHHHHHHHHCCC-SSEEEEESTTTCHHHHHHHHCC-CCEEEEETTSTCHHHHHHHHHHCT-
T ss_pred CCccccchhhHHhcCCCCCchHHhhHHHHhhcCCCceEECCchHHHHHHHHhhh-hcccccccchHhHHHHHHHHHHcCC
Confidence 589999999999999999999999999999999999999999999999999975 4699999999999999999999999
Q ss_pred ceeccC
Q psy12680 2561 PAKKLN 2566 (2567)
Q Consensus 2561 p~~~~~ 2566 (2567)
||-.-|
T Consensus 80 ~llIe~ 85 (228)
T PF12781_consen 80 PLLIEN 85 (228)
T ss_dssp EEEEC-
T ss_pred eeeecc
Confidence 997654
No 13
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.41 E-value=1.1e-12 Score=160.26 Aligned_cols=131 Identities=26% Similarity=0.361 Sum_probs=107.6
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHH-HHhh---------------------------hh----hhhcC
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGL-GKFF---------------------------KG----LIATG 53 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m-~rif---------------------------~G----l~q~G 53 (2567)
.||+|||||+.++.||+.+|.+++.+||++.++...+ |... .| .+..|
T Consensus 27 ~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g 106 (262)
T TIGR02640 27 RGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREG 106 (262)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcC
Confidence 7999999999999999999999999999998876543 2110 12 24568
Q ss_pred ccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEc-----CeEEEeeCceeEEEEeCCC-CCCCCCchhhHhhcc
Q psy12680 54 AWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFE-----GTILKLDRTCSVFITMNPG-YAGRSELPDNLKSLF 127 (2567)
Q Consensus 54 aW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~-----g~~i~l~~~~~iFiTmNPg-YaGRseLPdnLk~lF 127 (2567)
.|+++||+||++.++.+.+.+.+.. ..+... +..|.++|++-+++|+||. |+|..++|+.|+.-|
T Consensus 107 ~~lllDEi~r~~~~~q~~Ll~~Le~---------~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~ 177 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVLLSVFEE---------GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRL 177 (262)
T ss_pred CEEEEcchhhCCHHHHHHHHHHhcC---------CeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhc
Confidence 8999999999999998887765532 123322 4568899999999999985 999999999999999
Q ss_pred ccccccCCCHHHHHHHHH
Q psy12680 128 RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 128 Rpvam~~PD~~lIaEi~L 145 (2567)
..+.|-.||...-.+|+.
T Consensus 178 ~~i~i~~P~~~~e~~Il~ 195 (262)
T TIGR02640 178 ITIFMDYPDIDTETAILR 195 (262)
T ss_pred EEEECCCCCHHHHHHHHH
Confidence 999999999988888754
No 14
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.33 E-value=5.4e-12 Score=149.95 Aligned_cols=216 Identities=19% Similarity=0.231 Sum_probs=125.5
Q ss_pred CCCCCCcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccce
Q psy12680 1305 PRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPL 1384 (2567)
Q Consensus 1305 ~~~~~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~ 1384 (2567)
.++.+....+|.|+.|.|+...+...+..+.+..++||+|||||++++..- +.+ .-.++
T Consensus 3 yEY~G~~~rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La------------------~~l---G~~~~ 61 (231)
T PF12774_consen 3 YEYLGNSPRLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLA------------------RAL---GRFVV 61 (231)
T ss_dssp -----S-------HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHH------------------HCT---T--EE
T ss_pred ccccCCCCCceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHH------------------HHh---CCeEE
Confidence 455666788999999999999999999999999999999999999997421 111 12578
Q ss_pred eeccccccCHHHHHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccC--CCChHHHHHHHhhcccccccCccee
Q psy12680 1385 IMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFG--AQPPIEILRQWLDHWMWYDRKDVVA 1462 (2567)
Q Consensus 1385 ~lnfSa~Tts~~~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yG--tQ~~ielLRQlid~~g~ydr~~~~~ 1462 (2567)
++|||.+++...+.+++-+-.. .|-+ +-+|++|.-..+... +|....+...+.....-+.....+
T Consensus 62 vfnc~~~~~~~~l~ril~G~~~----------~GaW--~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~- 128 (231)
T PF12774_consen 62 VFNCSEQMDYQSLSRILKGLAQ----------SGAW--LCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQE- 128 (231)
T ss_dssp EEETTSSS-HHHHHHHHHHHHH----------HT-E--EEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCE-
T ss_pred EecccccccHHHHHHHHHHHhh----------cCch--hhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCE-
Confidence 8999999999999998766442 2223 346899876666443 333333333333322222222222
Q ss_pred eee-eeeeeeeecCCCCCCC-CCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHHHHHHHHHH
Q psy12680 1463 VKL-IEIQLMCAMGPPSTGN-TVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIF 1540 (2567)
Q Consensus 1463 ~~i-~diq~v~am~Ppggg~-~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~ati~ly 1540 (2567)
+.+ .++.+..+|||++.|+ .+++.+...|+.+++..|+...+..|. +.+.||... ..+..-.+.+|
T Consensus 129 i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~-------L~s~GF~~a-----~~La~kl~~l~ 196 (231)
T PF12774_consen 129 IKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIAEIL-------LLSQGFKDA-----KSLAKKLVSLF 196 (231)
T ss_dssp EE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHH-------HHCCCTSSH-----HHHHHHHHHHH
T ss_pred EEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHHHHH-------HHHcCchhH-----HHHHHHHHHHH
Confidence 233 3678899999999885 466677788888999999987665554 446777532 33444445556
Q ss_pred HHHHhhcCCCCCCcccccCchhHHHHHHH
Q psy12680 1541 KESLLNLLPTPTKSHYLFNLRDFARVIQG 1569 (2567)
Q Consensus 1541 ~~v~~~~lPTp~k~HY~FnlRDlsrv~qG 1569 (2567)
+ .++..+. .+.||+|+||-+..|+.-
T Consensus 197 ~-l~~~~lS--~q~hydfgLRalk~vl~~ 222 (231)
T PF12774_consen 197 Q-LCKEQLS--KQDHYDFGLRALKSVLRM 222 (231)
T ss_dssp H-HHHHCS---SSTT---SHHHHHHHHHH
T ss_pred H-HHHHhhc--cCccccccHHHHHHHHHH
Confidence 4 4455554 567999999999888763
No 15
>KOG1808|consensus
Probab=99.11 E-value=7.5e-09 Score=146.65 Aligned_cols=113 Identities=22% Similarity=0.404 Sum_probs=92.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCC-CcCcccc-cccCCCCC--CCcchHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSI-TMGQLYG-QFDAVSHE--WSDGILAVSYRQF 441 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKai-t~~eLyG-~~d~~T~E--W~DGvls~i~R~~ 441 (2567)
--+.|-||++||||++++=|+++.. ..+.+||-+.- +..|+.| |+...+++ |++|++=..+|+-
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g------------~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G 508 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATG------------KNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNG 508 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhc------------cCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhC
Confidence 4699999999999999999999973 12345555544 6999999 55555554 9999998888763
Q ss_pred HhcCCCCceEEEeCC-C-CCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCC
Q psy12680 442 AMSQNENRKWLIFDG-P-VDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQD 498 (2567)
Q Consensus 442 ~~~~~~~~~WivfDG-p-VDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~d 498 (2567)
.|+|||| . +-+.=+|.||-+||||+-|-++.|.|.--+.-+.|+|=+.+
T Consensus 509 --------~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn 559 (1856)
T KOG1808|consen 509 --------DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQN 559 (1856)
T ss_pred --------CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhcc
Confidence 6999999 3 35567899999999999999999999999999999996655
No 16
>KOG1808|consensus
Probab=99.10 E-value=9.5e-10 Score=155.45 Aligned_cols=117 Identities=27% Similarity=0.421 Sum_probs=97.4
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHH---------------hhhhhhhcCccccccccccCCchh
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGK---------------FFKGLIATGAWACFDEFNRIDVEV 68 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~r---------------if~Gl~q~GaW~CFDEfNri~~~v 68 (2567)
+..||+|+|||-.+|.||+++|+.++=.|=-+.+|++..-. .+.+.+--|.|..|||.|+-+.+|
T Consensus 444 llqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dv 523 (1856)
T KOG1808|consen 444 LLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDV 523 (1856)
T ss_pred EEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHH
Confidence 35799999999999999999999999999999999987544 344566779999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcCCceEEEcC-eEEEeeCceeEEEEeCCC--CCCCCCchhhHhhcc
Q psy12680 69 LSVVAQQILTIQRGVTLGEEEILFEG-TILKLDRTCSVFITMNPG--YAGRSELPDNLKSLF 127 (2567)
Q Consensus 69 LSvvaqqi~~Iq~a~~~~~~~~~f~g-~~i~l~~~~~iFiTmNPg--YaGRseLPdnLk~lF 127 (2567)
|-|+.+.+.- +.+-+.-++ +.+..+|+.-+|.|-||. |+||..|=.+|+.-|
T Consensus 524 L~aLnrlldd-------nRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf 578 (1856)
T KOG1808|consen 524 LEALNRLLDD-------NRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRF 578 (1856)
T ss_pred HHHHHhhhhh-------hccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccc
Confidence 9998877753 122233344 568999999999999997 999999887777744
No 17
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.10 E-value=8.4e-11 Score=130.16 Aligned_cols=114 Identities=32% Similarity=0.456 Sum_probs=84.5
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhh---h-----------hhhcCccccccccccCCchhHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFK---G-----------LIATGAWACFDEFNRIDVEVLS 70 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~---G-----------l~q~GaW~CFDEfNri~~~vLS 70 (2567)
..||+|||||+.++.+|+.+|.+++.++|+..++...+..-.. | .+..|.|.++|||||.+.+|++
T Consensus 4 L~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v~~ 83 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPEVLE 83 (139)
T ss_dssp EEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHHHHH
Confidence 3699999999999999999999999999999999987764433 2 1236999999999999999998
Q ss_pred HHHHHHHhhhhhhhcCCceEEE-c-CeEEEeeC------ceeEEEEeCCCCCCCCCchhhHhhcc
Q psy12680 71 VVAQQILTIQRGVTLGEEEILF-E-GTILKLDR------TCSVFITMNPGYAGRSELPDNLKSLF 127 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f-~-g~~i~l~~------~~~iFiTmNPgYaGRseLPdnLk~lF 127 (2567)
.+-+-+.. .++.. + +..+...+ ++-++.||||...|+.+|++.|+.-|
T Consensus 84 ~L~~ll~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 84 SLLSLLEE---------RRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp TTHHHHSS---------SEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred HHHHHHhh---------CcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 88776642 12222 2 33454444 59999999999999999999999755
No 18
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.06 E-value=2.1e-10 Score=140.88 Aligned_cols=133 Identities=20% Similarity=0.376 Sum_probs=109.6
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHH-HHH-------------Hhhhhhh----hcCccccccccccCCc
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYI-GLG-------------KFFKGLI----ATGAWACFDEFNRIDV 66 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~-~m~-------------rif~Gl~----q~GaW~CFDEfNri~~ 66 (2567)
..||+|||||..++.||+.||.+++.+||++.++.. -+| ++..|.. +.|.|..||||||.++
T Consensus 69 L~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p 148 (327)
T TIGR01650 69 VQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRP 148 (327)
T ss_pred EEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCH
Confidence 369999999999999999999999999999998883 233 2333544 8999999999999999
Q ss_pred hhHHHHHHHHHhhhhhhhcCCceEEEc--CeEEEeeCceeEEEEeCC-C-------CCCCCCchhhHhhccccc-cccCC
Q psy12680 67 EVLSVVAQQILTIQRGVTLGEEEILFE--GTILKLDRTCSVFITMNP-G-------YAGRSELPDNLKSLFRTV-AMMVP 135 (2567)
Q Consensus 67 ~vLSvvaqqi~~Iq~a~~~~~~~~~f~--g~~i~l~~~~~iFiTmNP-g-------YaGRseLPdnLk~lFRpv-am~~P 135 (2567)
+|++++-..+. ....+.+. ++.|..+|.+-+|.|.|| | |.|...||+.+..=|.-+ .|--|
T Consensus 149 ~~~~~L~~lLE--------~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp 220 (327)
T TIGR01650 149 DVMFVIQRVLE--------AGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYL 220 (327)
T ss_pred HHHHHHHHHhc--------cCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCC
Confidence 99988765553 13345553 567889999999999999 3 999999999999999755 78889
Q ss_pred CHHHHHHHHH
Q psy12680 136 DYALISEIIV 145 (2567)
Q Consensus 136 D~~lIaEi~L 145 (2567)
+...=.+|+.
T Consensus 221 ~~e~E~~Il~ 230 (327)
T TIGR01650 221 EHDNEAAIVL 230 (327)
T ss_pred CHHHHHHHHH
Confidence 9987777765
No 19
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.04 E-value=3.6e-09 Score=144.70 Aligned_cols=191 Identities=21% Similarity=0.319 Sum_probs=112.6
Q ss_pred CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhh---hhcccCCc
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSK---LDKRRKGV 1412 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~---lekr~~~~ 1412 (2567)
+++|+||||||||.+++. +.+.+. ...+.+++|..+....+.+++-+. .-...++.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~------------------LA~~l~---~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~ 548 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQ------------------LSKALG---IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL 548 (758)
T ss_pred eEEEECCCCCCHHHHHHH------------------HHHHhC---CCcEEeechhhcccccHHHHcCCCCCcccccccch
Confidence 379999999999988763 122221 245677888777655444443110 00000000
Q ss_pred cCCC--CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCC-------CC---
Q psy12680 1413 YGPP--LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPS-------TG--- 1480 (2567)
Q Consensus 1413 ~gp~--~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppg-------gg--- 1480 (2567)
+... ....+|+|+|++....++ +...|-|++|.|-+.|.. ..-....++.+|.+.|... -|
T Consensus 549 L~~~v~~~p~sVlllDEieka~~~------v~~~LLq~ld~G~ltd~~-g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~ 621 (758)
T PRK11034 549 LTDAVIKHPHAVLLLDEIEKAHPD------VFNLLLQVMDNGTLTDNN-GRKADFRNVVLVMTTNAGVRETERKSIGLIH 621 (758)
T ss_pred HHHHHHhCCCcEEEeccHhhhhHH------HHHHHHHHHhcCeeecCC-CceecCCCcEEEEeCCcCHHHHhhcccCccc
Confidence 0000 113489999999877655 678899999987777642 2334556777888887431 01
Q ss_pred ------------CCCCcchhcccc-ceeccCCCHHHHHHHHHHHHHh---hhcccCCcccchhH-HHHHHHHHHHHHHHH
Q psy12680 1481 ------------NTVTPRFSRHFN-QIVINKFDDDTMVTIFSKILLW---HLDTRGFSKEFDPC-IEQLVQATLHIFKES 1543 (2567)
Q Consensus 1481 ------------~~is~Rf~r~f~-vi~i~~p~~~sL~~If~~il~~---~l~~~gf~~~v~~~-~~~lv~ati~ly~~v 1543 (2567)
....|-|+..+. ++.+++.+.+.+..|....+.. .+...|..-.+..- .+.|+.
T Consensus 622 ~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~--------- 692 (758)
T PRK11034 622 QDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAE--------- 692 (758)
T ss_pred chhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHH---------
Confidence 124466666664 7778999999999998876642 23334444333321 222221
Q ss_pred HhhcCCCCCCcccccCchhHHHHHHHHh
Q psy12680 1544 LLNLLPTPTKSHYLFNLRDFARVIQGVL 1571 (2567)
Q Consensus 1544 ~~~~lPTp~k~HY~FnlRDlsrv~qGll 1571 (2567)
.-.+-.|+-|.|.|+++-.+
T Consensus 693 --------~~~~~~~GAR~l~r~i~~~l 712 (758)
T PRK11034 693 --------KGYDRAMGARPMARVIQDNL 712 (758)
T ss_pred --------hCCCCCCCCchHHHHHHHHH
Confidence 11344589999999988533
No 20
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.01 E-value=2.6e-09 Score=148.92 Aligned_cols=122 Identities=16% Similarity=0.301 Sum_probs=84.7
Q ss_pred ceeEEEeccCCCCccc--ccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCC--CCCcCccccccccee
Q psy12680 931 KRCVVFVDDVNMPLKE--EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST--GNTVTPRFSRHFNQI 1006 (2567)
Q Consensus 931 k~~~~fiDD~nmp~~~--~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~--~~~i~~r~~r~f~~~ 1006 (2567)
++.|+|||++++=... .-|.|..-.+|...+..| ++++|+|.+++.- ...+.|-|.|.|.++
T Consensus 280 ~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--------------~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i 345 (852)
T TIGR03345 280 QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--------------ELRTIAATTWAEYKKYFEKDPALTRRFQVV 345 (852)
T ss_pred CCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--------------CeEEEEecCHHHHhhhhhccHHHHHhCeEE
Confidence 6789999999986542 235555556777777655 3568999988643 357888999999999
Q ss_pred eeccCCchhhHHHHHHHH---hhhcc-----cccccccccccCCCCcccCCchhHHHHHHHHHHHHhh
Q psy12680 1007 VINKFDDDTMVTIFSKIL---LWHLD-----TRHESCKGITSDLFPGIELPETDYTILNKAVREVCEK 1066 (2567)
Q Consensus 1007 ~~~~~~~~~l~~i~~~~l---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (2567)
.+++|+.++...|+..+. ..|.. ....++-.+...-.++.+.|.+...++.+|...+.-+
T Consensus 346 ~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~ 413 (852)
T TIGR03345 346 KVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALS 413 (852)
T ss_pred EeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHh
Confidence 999999999999954333 33321 1122233344555666788888888888877766544
No 21
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.00 E-value=8.7e-09 Score=145.00 Aligned_cols=122 Identities=13% Similarity=0.216 Sum_probs=80.0
Q ss_pred ceeEEEeccCCCCccc--ccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCC--CCcCccccccccee
Q psy12680 931 KRCVVFVDDVNMPLKE--EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFNQI 1006 (2567)
Q Consensus 931 k~~~~fiDD~nmp~~~--~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~--~~i~~r~~r~f~~~ 1006 (2567)
++.++|||++++=... .-|..-...+|+-++..| ++++|+|.+++.-- ..+.|.+.|.|..+
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g--------------~i~~IgaTt~~e~r~~~~~d~al~rRf~~i 331 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG--------------ELHCIGATTLDEYRKYIEKDAALERRFQPV 331 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC--------------ceEEEEeCcHHHHHHHhhcCHHHHhcCCEE
Confidence 5789999999964321 223333445555554322 36788888876432 35678999999999
Q ss_pred eeccCCchhhHHHHHHHHhh---hc-----ccccccccccccCCCCcccCCchhHHHHHHHHHHHHhh
Q psy12680 1007 VINKFDDDTMVTIFSKILLW---HL-----DTRHESCKGITSDLFPGIELPETDYTILNKAVREVCEK 1066 (2567)
Q Consensus 1007 ~~~~~~~~~l~~i~~~~l~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (2567)
.++.|+.++...|+..+... |. +.....+-.+.....++-..|.+...++.+|...+.-.
T Consensus 332 ~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~ 399 (852)
T TIGR03346 332 FVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRME 399 (852)
T ss_pred EeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhh
Confidence 99999999999988765322 11 11112233444556667778888888888888766543
No 22
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.00 E-value=5.1e-10 Score=123.95 Aligned_cols=125 Identities=25% Similarity=0.269 Sum_probs=99.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccC--CCCCCCcchHHHHHHHHHhc
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDA--VSHEWSDGILAVSYRQFAMS 444 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~--~T~EW~DGvls~i~R~~~~~ 444 (2567)
+|||+||||+|||++.+.|++.+. .++.. +--+...+..+|+|.+++ ...+|.||.+...++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~----------~~~~~-i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~----- 64 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG----------RPVIR-INCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR----- 64 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT----------CEEEE-EE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh----------cceEE-EEeccccccccceeeeeeccccccccccccccccc-----
Confidence 589999999999999999999982 23332 334455788999999997 667899999987776
Q ss_pred CCCCceEEEeCCCC--CHHHHHHHHhhhcCCceeEecccceeecCCC------CeEEEecCCcC----cCCcceeeec
Q psy12680 445 QNENRKWLIFDGPV--DAIWIENMNSVLDDNKKLCLMSGEIIALAPT------TSLIFEPQDLE----VASPATVSRC 510 (2567)
Q Consensus 445 ~~~~~~WivfDGpV--Da~WIEnLNSVLDDNK~LtL~nGErI~l~~~------~~llFEv~dL~----~ASPATVSRc 510 (2567)
...|+++|.-= ++..++.|+++||+++......+++++.+++ +++|+-..+-. ..+||+.+||
T Consensus 65 ---~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 65 ---KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ---EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 45799999955 7999999999999999998888888888774 89999988887 8999999996
No 23
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.98 E-value=7.8e-09 Score=143.60 Aligned_cols=117 Identities=13% Similarity=0.183 Sum_probs=74.1
Q ss_pred eeEEEeccCCCCccccc---CCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCC--CCcCccccccccee
Q psy12680 932 RCVVFVDDVNMPLKEEF---GAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFNQI 1006 (2567)
Q Consensus 932 ~~~~fiDD~nmp~~~~~---g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~--~~i~~r~~r~f~~~ 1006 (2567)
+.++|||++..=..... |+...-.+|+..++.| ++++|+|++++.-. ..+++-|.|.|..+
T Consensus 275 ~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--------------~i~~IgaTt~~e~~~~~~~d~al~rRf~~i 340 (731)
T TIGR02639 275 NAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--------------KLRCIGSTTYEEYKNHFEKDRALSRRFQKI 340 (731)
T ss_pred CeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--------------CeEEEEecCHHHHHHHhhhhHHHHHhCceE
Confidence 57999999995433221 2233456777776543 35688898875422 35678899999999
Q ss_pred eeccCCchhhHHHHHHHHhhh---cc-----cccccccccccCCCCcccCCchhHHHHHHHHHH
Q psy12680 1007 VINKFDDDTMVTIFSKILLWH---LD-----TRHESCKGITSDLFPGIELPETDYTILNKAVRE 1062 (2567)
Q Consensus 1007 ~~~~~~~~~l~~i~~~~l~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (2567)
.+++|+.++...|...+...+ .. ....++..+...-.++...|.+...++.++...
T Consensus 341 ~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~ 404 (731)
T TIGR02639 341 DVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGAS 404 (731)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhh
Confidence 999999999999998766431 11 111222233333444445666666666665543
No 24
>KOG0733|consensus
Probab=98.88 E-value=1.3e-08 Score=128.12 Aligned_cols=144 Identities=17% Similarity=0.297 Sum_probs=89.4
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGV 1412 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~ 1412 (2567)
.-.+||||||||||||.+.++.-.-. .+||=+---|+- .+.--+--|+--+.+
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa--------------------------g~NFisVKGPEL-lNkYVGESErAVR~v 596 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA--------------------------GANFISVKGPEL-LNKYVGESERAVRQV 596 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc--------------------------cCceEeecCHHH-HHHHhhhHHHHHHHH
Confidence 34679999999999998887532111 134433333332 122222222222223
Q ss_pred cCCC-CCcEEEEEEcCCC--CccccccCCCChHHHHHHHhh-cccccccCcceeeeeeeeeeeeecCCCCCCCCCCcch-
Q psy12680 1413 YGPP-LGKRCVVFVDDVN--MPLKEEFGAQPPIEILRQWLD-HWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRF- 1487 (2567)
Q Consensus 1413 ~gp~-~gK~~vvFiDDiN--mP~~d~yGtQ~~ielLRQlid-~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf- 1487 (2567)
|-.+ ..--||+|+|++. .|..++-|+-.---++-||+. .-|.-+|. .|.++||.|-|-- |+|-+
T Consensus 597 FqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~--------gV~viaATNRPDi---IDpAiL 665 (802)
T KOG0733|consen 597 FQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERR--------GVYVIAATNRPDI---IDPAIL 665 (802)
T ss_pred HHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccccc--------ceEEEeecCCCcc---cchhhc
Confidence 3333 3445999999987 577777777777777777654 45655554 4667888886632 34433
Q ss_pred --hccccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1488 --SRHFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1488 --~r~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.|.=.+++++.|+.+.=..|..++.+.
T Consensus 666 RPGRlDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 666 RPGRLDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred CCCccCceeeecCCCHHHHHHHHHHHhcc
Confidence 345567889999999999998887753
No 25
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.86 E-value=8.1e-08 Score=134.74 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=57.9
Q ss_pred ceeEEEeccCCCCccc--ccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCC--CCcCccccccccee
Q psy12680 931 KRCVVFVDDVNMPLKE--EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFNQI 1006 (2567)
Q Consensus 931 k~~~~fiDD~nmp~~~--~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~--~~i~~r~~r~f~~~ 1006 (2567)
.+.++|||++++=... .-|+.-.-.+|...+..| ++++|+|.+++.-- ..+.+-|.|.|..+
T Consensus 271 ~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--------------~l~~IgaTt~~e~r~~~~~d~al~rRf~~i 336 (857)
T PRK10865 271 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLDEYRQYIEKDAALERRFQKV 336 (857)
T ss_pred CCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--------------CCeEEEcCCCHHHHHHhhhcHHHHhhCCEE
Confidence 5689999999966422 233333445565555433 46788888887643 35778899999999
Q ss_pred eeccCCchhhHHHHHHHH
Q psy12680 1007 VINKFDDDTMVTIFSKIL 1024 (2567)
Q Consensus 1007 ~~~~~~~~~l~~i~~~~l 1024 (2567)
.+..|+.++...|+..+.
T Consensus 337 ~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 337 FVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EeCCCCHHHHHHHHHHHh
Confidence 999999999999887765
No 26
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.81 E-value=1.9e-07 Score=131.37 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=78.6
Q ss_pred ceeEEEeccCCCCccc--ccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCC--CCcCccccccccee
Q psy12680 931 KRCVVFVDDVNMPLKE--EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFNQI 1006 (2567)
Q Consensus 931 k~~~~fiDD~nmp~~~--~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~--~~i~~r~~r~f~~~ 1006 (2567)
+++|+|||++++=..- .-|..-...+|+-.+..| ++++|+|++++--- ....|-|.|.|..+
T Consensus 271 ~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--------------~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I 336 (821)
T CHL00095 271 NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--------------ELQCIGATTLDEYRKHIEKDPALERRFQPV 336 (821)
T ss_pred CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--------------CcEEEEeCCHHHHHHHHhcCHHHHhcceEE
Confidence 4679999999754322 224444455666555533 36788888876432 24567899999999
Q ss_pred eeccCCchhhHHHHHHHHhh---hcc-----cccccccccccCCCCcccCCchhHHHHHHHHHHHHhhh
Q psy12680 1007 VINKFDDDTMVTIFSKILLW---HLD-----TRHESCKGITSDLFPGIELPETDYTILNKAVREVCEKA 1067 (2567)
Q Consensus 1007 ~~~~~~~~~l~~i~~~~l~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (2567)
.++.|+.++...|+..+... |.. .....+..+...-.+....|.+...++..|...+.-..
T Consensus 337 ~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~ 405 (821)
T CHL00095 337 YVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLIN 405 (821)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhc
Confidence 99999999988888765532 211 11122223334455666677787788888777665543
No 27
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.80 E-value=1.1e-08 Score=108.60 Aligned_cols=112 Identities=25% Similarity=0.292 Sum_probs=71.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHH------------HhhhhhhhcCccccccccccCCchhHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLG------------KFFKGLIATGAWACFDEFNRIDVEVLSVVA 73 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~------------rif~Gl~q~GaW~CFDEfNri~~~vLSvva 73 (2567)
.|+.|+|||.++|.||+++|..+--..|+..+....+- ++-.|-..+ -+..+||+||.++.+.|++-
T Consensus 5 eg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~-~ill~DEiNrappktQsAlL 83 (131)
T PF07726_consen 5 EGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFT-NILLADEINRAPPKTQSALL 83 (131)
T ss_dssp ES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-S-SEEEEETGGGS-HHHHHHHH
T ss_pred ECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhh-ceeeecccccCCHHHHHHHH
Confidence 69999999999999999999999988998766554432 122333333 36789999999999999987
Q ss_pred HHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCC-CCCCCCCchhhHhhcc
Q psy12680 74 QQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNP-GYAGRSELPDNLKSLF 127 (2567)
Q Consensus 74 qqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNP-gYaGRseLPdnLk~lF 127 (2567)
+-++. .++.++|.+.+|.+.+-|+.|+|| .++|..+||+.+..=|
T Consensus 84 eam~E---------r~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 84 EAMEE---------RQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHH---------SEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HHHHc---------CeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 76652 478899999999999999999999 7999999999987644
No 28
>PHA02244 ATPase-like protein
Probab=98.76 E-value=2.6e-08 Score=123.44 Aligned_cols=120 Identities=19% Similarity=0.271 Sum_probs=98.8
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHH------------HHHhhhhhhhcCccccccccccCCchhHHHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIG------------LGKFFKGLIATGAWACFDEFNRIDVEVLSVV 72 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~------------m~rif~Gl~q~GaW~CFDEfNri~~~vLSvv 72 (2567)
..||+|||||..++.||+.+|++++..|+.. +... -|.++.. ...|.|+++||+|+++.+++.++
T Consensus 124 L~GppGtGKTtLA~aLA~~lg~pfv~In~l~--d~~~L~G~i~~~g~~~dgpLl~A-~~~GgvLiLDEId~a~p~vq~~L 200 (383)
T PHA02244 124 LKGGAGSGKNHIAEQIAEALDLDFYFMNAIM--DEFELKGFIDANGKFHETPFYEA-FKKGGLFFIDEIDASIPEALIII 200 (383)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEecCh--HHHhhcccccccccccchHHHHH-hhcCCEEEEeCcCcCCHHHHHHH
Confidence 3699999999999999999999999999642 2111 1233333 45689999999999999999877
Q ss_pred HHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCC---C----CCCCCCchhhHhhccccccccCCC
Q psy12680 73 AQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNP---G----YAGRSELPDNLKSLFRTVAMMVPD 136 (2567)
Q Consensus 73 aqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNP---g----YaGRseLPdnLk~lFRpvam~~PD 136 (2567)
...+.. ..+.+.|..+..++++.+++|.|| | |+|+..||+.+..-|..|.+--|+
T Consensus 201 ~~lLd~---------r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~ 262 (383)
T PHA02244 201 NSAIAN---------KFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDE 262 (383)
T ss_pred HHHhcc---------CeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCc
Confidence 666532 256777889999999999999999 4 689999999999999999999998
No 29
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.56 E-value=1.2e-06 Score=121.98 Aligned_cols=151 Identities=13% Similarity=0.226 Sum_probs=89.7
Q ss_pred HHHHHHh-cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhcc--ccccceeeccccccCH--------
Q psy12680 1326 LMKLLVT-HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSI--EQWQPLIMNFSAQTSA-------- 1394 (2567)
Q Consensus 1326 ll~~ll~-~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~--~~~~~~~lnfSa~Tts-------- 1394 (2567)
+++.|.. ...+++|+||||||||++++..-..+.. ...+. ....+..++.++-...
T Consensus 194 ~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~-------------~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e 260 (731)
T TIGR02639 194 TIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE-------------GKVPENLKNAKIYSLDMGSLLAGTKYRGDFE 260 (731)
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh-------------CCCchhhcCCeEEEecHHHHhhhccccchHH
Confidence 4444443 3568899999999999988642211100 00110 1233444554433211
Q ss_pred HHHHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCcccccc---CCCChHHHHHHHhhcccccccCcceeeeeeeeeee
Q psy12680 1395 NQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEF---GAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLM 1471 (2567)
Q Consensus 1395 ~~~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~y---GtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v 1471 (2567)
..++++++. +.+ .+.+|+||||++.=..... |+.....+|+..++.| .++++
T Consensus 261 ~~l~~i~~~-~~~----------~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--------------~i~~I 315 (731)
T TIGR02639 261 ERLKAVVSE-IEK----------EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--------------KLRCI 315 (731)
T ss_pred HHHHHHHHH-Hhc----------cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--------------CeEEE
Confidence 123333221 111 1258999999995433211 2233456777777642 37789
Q ss_pred eecCCCCCC--CCCCcchhccccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1472 CAMGPPSTG--NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1472 ~am~Ppggg--~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
+|++++--. ...++-|.|.|..+.++.|+.+....|...+...
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHH
Confidence 999875432 2456778899999999999999999999877654
No 30
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.53 E-value=1.9e-05 Score=111.03 Aligned_cols=149 Identities=15% Similarity=0.265 Sum_probs=89.8
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccc---ccC-HHHHHHHHHhhhhccc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSA---QTS-ANQTQDIIMSKLDKRR 1409 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa---~Tt-s~~~q~~ies~lekr~ 1409 (2567)
..+++|+||+|+|||+++......+....... .......+.+.+++ .|+ ...+..-+..-++.-+
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~-----------~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~ 276 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPP-----------ALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVK 276 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCc-----------cccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHH
Confidence 46789999999999999864322111110000 00112234444443 222 1122222222232211
Q ss_pred CCccCCCCCcEEEEEEcCCCCcccc--ccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC--CCCCc
Q psy12680 1410 KGVYGPPLGKRCVVFVDDVNMPLKE--EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTP 1485 (2567)
Q Consensus 1410 ~~~~gp~~gK~~vvFiDDiNmP~~d--~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg--~~is~ 1485 (2567)
. .++++|+|||++++-... .-|.|..-.+|...++.| ++++|+|.+++.-. ...+|
T Consensus 277 ~------~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--------------~l~~IgaTT~~e~~~~~~~d~ 336 (852)
T TIGR03345 277 A------SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--------------ELRTIAATTWAEYKKYFEKDP 336 (852)
T ss_pred h------cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--------------CeEEEEecCHHHHhhhhhccH
Confidence 1 136799999999986432 124455555777777654 36789999886433 45688
Q ss_pred chhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1486 RFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1486 Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
-|.|.|.++.++.|+.+....|+..+..
T Consensus 337 AL~rRf~~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 337 ALTRRFQVVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred HHHHhCeEEEeCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999866553
No 31
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.48 E-value=1.3e-06 Score=107.85 Aligned_cols=218 Identities=13% Similarity=0.148 Sum_probs=138.9
Q ss_pred eeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc
Q psy12680 1313 IIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT 1392 (2567)
Q Consensus 1313 ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T 1392 (2567)
-++..++|.+. +...+..+++++|.||+|||||++++. +.+.+ .+..+.+||+..+
T Consensus 46 ~y~f~~~~~~~---vl~~l~~~~~ilL~G~pGtGKTtla~~------------------lA~~l---~~~~~rV~~~~~l 101 (327)
T TIGR01650 46 AYLFDKATTKA---ICAGFAYDRRVMVQGYHGTGKSTHIEQ------------------IAARL---NWPCVRVNLDSHV 101 (327)
T ss_pred CccCCHHHHHH---HHHHHhcCCcEEEEeCCCChHHHHHHH------------------HHHHH---CCCeEEEEecCCC
Confidence 45666677653 344556789999999999999988853 22233 2456789999999
Q ss_pred CHHHHHHHHHhhhh-cccCC--ccCCC---CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhccccccc-Ccceeeee
Q psy12680 1393 SANQTQDIIMSKLD-KRRKG--VYGPP---LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDR-KDVVAVKL 1465 (2567)
Q Consensus 1393 ts~~~q~~ies~le-kr~~~--~~gp~---~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr-~~~~~~~i 1465 (2567)
++..+--.-.-.++ ..... ..||- ..+.+++++|++|+-.++ +...|-.++|++|.--- +....+..
T Consensus 102 ~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~------~~~~L~~lLE~~~~l~i~~~~~~i~~ 175 (327)
T TIGR01650 102 SRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPD------VMFVIQRVLEAGGKLTLLDQNRVIRA 175 (327)
T ss_pred ChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHH------HHHHHHHHhccCCeEEECCCceEecC
Confidence 88643332100010 01101 22442 245588999999987655 45667788887654432 23344444
Q ss_pred e-eeeeeeecCCCC--------CC-CCCCcchhccccc-eeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHHHH
Q psy12680 1466 I-EIQLMCAMGPPS--------TG-NTVTPRFSRHFNQ-IVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQ 1534 (2567)
Q Consensus 1466 ~-diq~v~am~Ppg--------gg-~~is~Rf~r~f~v-i~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~ 1534 (2567)
. +..++|++||.+ .| +.+++-++..|.+ +.++||+.+.-..|..... .+.... ..+.++.
T Consensus 176 hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~------~~~~~~---~~~~i~~ 246 (327)
T TIGR01650 176 HPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA------KGFDDT---EGKDIIN 246 (327)
T ss_pred CCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc------cCCCcc---chHHHHH
Confidence 4 788999999975 23 4567778888875 5799999999988876432 122111 1345666
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHh
Q psy12680 1535 ATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVL 1571 (2567)
Q Consensus 1535 ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll 1571 (2567)
.++++-..+++.+. ........++|.+-+|.+-..
T Consensus 247 ~mV~la~~tR~~~~--~~~i~~~~SpR~li~w~~~~~ 281 (327)
T TIGR01650 247 AMVRVADMTRNAFI--NGDISTVMSPRTVITWAENAE 281 (327)
T ss_pred HHHHHHHHHHhhhc--cCCccccccHHHHHHHHHHHH
Confidence 66677766665442 123566789999999987544
No 32
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.45 E-value=3.8e-07 Score=115.86 Aligned_cols=132 Identities=29% Similarity=0.435 Sum_probs=106.0
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHH---------------HhhhhhhhcCc--cccccccccCCch
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLG---------------KFFKGLIATGA--WACFDEFNRIDVE 67 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~---------------rif~Gl~q~Ga--W~CFDEfNri~~~ 67 (2567)
..||+|||||..+|.+|+.+|.+++..+|++.++...+- ++..|-.-.+. -+.+||+||.+++
T Consensus 48 l~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~ 127 (329)
T COG0714 48 LEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE 127 (329)
T ss_pred EECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH
Confidence 369999999999999999999999999999988765432 23334333333 8899999999999
Q ss_pred hHHHHHHHHHhhhhhhhcCCceEEEcCeE-EEeeCceeEEEEeCCC-CCCCCCchhhHhhcc-ccccccCCCHHHHHHHH
Q psy12680 68 VLSVVAQQILTIQRGVTLGEEEILFEGTI-LKLDRTCSVFITMNPG-YAGRSELPDNLKSLF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 68 vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~-i~l~~~~~iFiTmNPg-YaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~ 144 (2567)
+.|++-+-+. ..++...|.. +.+.+.+-+++|.||+ |.|..+||+.++.-| -.+.+--|+-.--..++
T Consensus 128 ~q~aLl~~l~---------e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 128 VQNALLEALE---------ERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred HHHHHHHHHh---------CcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 9998876553 2477888888 9999999999999995 688889999999999 77777778555444444
Q ss_pred H
Q psy12680 145 V 145 (2567)
Q Consensus 145 L 145 (2567)
+
T Consensus 199 ~ 199 (329)
T COG0714 199 L 199 (329)
T ss_pred H
Confidence 3
No 33
>KOG0996|consensus
Probab=98.44 E-value=0.0035 Score=85.42 Aligned_cols=50 Identities=32% Similarity=0.475 Sum_probs=35.9
Q ss_pred HHHHHHhhhccccccCCceEEEe--ccccccccCC--ccccchhhHhhhhhccCCC
Q psy12680 1912 DNKKLCLMSGEIIALAPTTSLIF--EPQDLEVASP--ATITDESMVEDLSNLLNSG 1963 (2567)
Q Consensus 1912 D~k~l~l~~Ge~i~~~~~~~lif--e~q~L~~aS~--a~I~~e~fLE~iN~lL~sG 1963 (2567)
|.-+|....| |-+..+=|||. |++.+...-| -+=.++|||||+-+|.-++
T Consensus 210 ~V~~lLk~~g--IDleHNRFLILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ 263 (1293)
T KOG0996|consen 210 DVTKLLKSHG--IDLEHNRFLILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTN 263 (1293)
T ss_pred HHHHHHHhcC--CCCccceeeeehhhHHHHHhcCCCCCCCCcchHHHHHHHHhccc
Confidence 4445666666 78888888887 6666666667 4446899999998887554
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=98.39 E-value=0.0036 Score=90.56 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=50.0
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12680 2337 IVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKE 2416 (2567)
Q Consensus 2337 ~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~ 2416 (2567)
....+++++++++..+..++....+++.++.++.+++..+..+.++...++.+++ ++...+.++.....=++.|..+..
T Consensus 538 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~ 616 (880)
T PRK02224 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKRE 616 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444455555555566666666666666666666 466666666655555566666666
Q ss_pred cHHHHHHHHHHHh
Q psy12680 2417 RWSSTAKMLNEKY 2429 (2567)
Q Consensus 2417 RW~~~~~~l~~~~ 2429 (2567)
+|+.....+..++
T Consensus 617 ~l~~~~~~~~~~l 629 (880)
T PRK02224 617 ALAELNDERRERL 629 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 6654444444433
No 35
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.34 E-value=3.5e-06 Score=103.57 Aligned_cols=141 Identities=19% Similarity=0.272 Sum_probs=102.0
Q ss_pred HHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccC------------
Q psy12680 357 QIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDA------------ 424 (2567)
Q Consensus 357 QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~------------ 424 (2567)
++...+..+.-|+|.||||||||++.+.|++.+ +.++.....++ .++..+|.|.+..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~-~~~~~dllg~~~~~~~~~~~~~~~~ 81 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDA-ELTTSDLVGSYAGYTRKKVHDQFIH 81 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCc-cCCHHHHhhhhcccchhhHHHHHHH
Confidence 344556667789999999999999999998755 24555555555 4555677776532
Q ss_pred --------CCCCCCcchHHHHHHHHHhcCCCCceEEEeCCC--CCHHHHHHHHhhhcCCceeEecc----cceeecCCCC
Q psy12680 425 --------VSHEWSDGILAVSYRQFAMSQNENRKWLIFDGP--VDAIWIENMNSVLDDNKKLCLMS----GEIIALAPTT 490 (2567)
Q Consensus 425 --------~T~EW~DGvls~i~R~~~~~~~~~~~WivfDGp--VDa~WIEnLNSVLDDNK~LtL~n----GErI~l~~~~ 490 (2567)
...+|.||.+...+++ ..|+++|.- .++..-..|+++|++ +.+++++ |+.|+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~g~l~~A~~~--------g~~lllDEi~r~~~~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~f 152 (262)
T TIGR02640 82 NVVKLEDIVRQNWVDNRLTLAVRE--------GFTLVYDEFTRSKPETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEF 152 (262)
T ss_pred HhhhhhcccceeecCchHHHHHHc--------CCEEEEcchhhCCHHHHHHHHHHhcC-CeEEccCCCCCCceEecCCCC
Confidence 2237999988765542 369999985 478899999999997 6788886 4678899999
Q ss_pred eEEEecCCc-----CcCCcceeeeceeEEecC
Q psy12680 491 SLIFEPQDL-----EVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 491 ~llFEv~dL-----~~ASPATVSRcGmVy~~~ 517 (2567)
++|+=...- ...++|...||-.++++.
T Consensus 153 rvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~ 184 (262)
T TIGR02640 153 RVIFTSNPVEYAGVHETQDALLDRLITIFMDY 184 (262)
T ss_pred EEEEeeCCccccceecccHHHHhhcEEEECCC
Confidence 988843322 133788888988777763
No 36
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.34 E-value=7.4e-06 Score=115.63 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=89.1
Q ss_pred HHHHHHh-cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc---cC-----HHH
Q psy12680 1326 LMKLLVT-HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ---TS-----ANQ 1396 (2567)
Q Consensus 1326 ll~~ll~-~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~---Tt-----s~~ 1396 (2567)
+++.|.. ...+++|+||||||||+++...-......... .. .....+..++.++- |+ .+.
T Consensus 191 ~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp-----~~------l~~~~i~~l~~~~l~ag~~~~ge~e~r 259 (821)
T CHL00095 191 VIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVP-----DI------LEDKLVITLDIGLLLAGTKYRGEFEER 259 (821)
T ss_pred HHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCC-----hh------hcCCeEEEeeHHHHhccCCCccHHHHH
Confidence 3444433 45578999999999999986422111110000 00 01223444554321 21 112
Q ss_pred HHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccc--cCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeec
Q psy12680 1397 TQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEE--FGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAM 1474 (2567)
Q Consensus 1397 ~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~--yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am 1474 (2567)
++++++.- . ..+.+|+||||+++-.... -|+.-...+|+..+..| ++++|+|+
T Consensus 260 l~~i~~~~-~----------~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--------------~l~~IgaT 314 (821)
T CHL00095 260 LKRIFDEI-Q----------ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--------------ELQCIGAT 314 (821)
T ss_pred HHHHHHHH-H----------hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--------------CcEEEEeC
Confidence 33333221 1 1245899999998543221 23444556677666533 37889999
Q ss_pred CCCCCC--CCCCcchhccccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1475 GPPSTG--NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1475 ~Ppggg--~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
+++.-. ....|-|.|.|..+.++.|+.+....|+..+...
T Consensus 315 t~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~ 356 (821)
T CHL00095 315 TLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSR 356 (821)
T ss_pred CHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHH
Confidence 886543 2456789999999999999999999998876543
No 37
>PHA02244 ATPase-like protein
Probab=98.31 E-value=3.1e-06 Score=105.45 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=102.7
Q ss_pred HHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHH
Q psy12680 357 QIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAV 436 (2567)
Q Consensus 357 QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~ 436 (2567)
.+-..+..+.-|+|.||||||||++.+.++..+. ...+.+| .-++...|.|..+. ...|.||-|..
T Consensus 111 ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg------------~pfv~In-~l~d~~~L~G~i~~-~g~~~dgpLl~ 176 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD------------LDFYFMN-AIMDEFELKGFIDA-NGKFHETPFYE 176 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC------------CCEEEEe-cChHHHhhcccccc-cccccchHHHH
Confidence 3344556678899999999999999999988752 2244555 22345567786654 45899999877
Q ss_pred HHHHHHhcCCCCceEEEeCCCC--CHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCC--------c---CcCC
Q psy12680 437 SYRQFAMSQNENRKWLIFDGPV--DAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQD--------L---EVAS 503 (2567)
Q Consensus 437 i~R~~~~~~~~~~~WivfDGpV--Da~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~d--------L---~~AS 503 (2567)
.+++ -.|+++|.-- .+.=...||++||+. .+.+. |+++..++++++|+=... + ....
T Consensus 177 A~~~--------GgvLiLDEId~a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~ 246 (383)
T PHA02244 177 AFKK--------GGLFFIDEIDASIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNTLGKGADHIYVARNKID 246 (383)
T ss_pred Hhhc--------CCEEEEeCcCcCCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCCCccCcccccCCCcccC
Confidence 5432 3599999855 466778999999975 77776 778999999999984443 2 5679
Q ss_pred cceeeeceeEEecC
Q psy12680 504 PATVSRCGMIYMEP 517 (2567)
Q Consensus 504 PATVSRcGmVy~~~ 517 (2567)
||+++|+-.|+|+.
T Consensus 247 ~AllDRFv~I~~dy 260 (383)
T PHA02244 247 GATLDRFAPIEFDY 260 (383)
T ss_pred HHHHhhcEEeeCCC
Confidence 99999999999884
No 38
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.23 E-value=2.7e-05 Score=109.82 Aligned_cols=158 Identities=15% Similarity=0.213 Sum_probs=90.9
Q ss_pred HHHHHHHhcC-CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHH----HHHH
Q psy12680 1325 ALMKLLVTHQ-KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSAN----QTQD 1399 (2567)
Q Consensus 1325 ~ll~~ll~~~-~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~----~~q~ 1399 (2567)
-+++.|.... .+++|+||||||||+++......+...... .. ...+..+.+++++-.... .+..
T Consensus 189 ~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp---------~~--l~~~~~~~l~l~~l~ag~~~~g~~e~ 257 (857)
T PRK10865 189 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP---------EG--LKGRRVLALDMGALVAGAKYRGEFEE 257 (857)
T ss_pred HHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCc---------hh--hCCCEEEEEehhhhhhccchhhhhHH
Confidence 3445454444 478999999999999986432211110000 00 012344555555432111 1111
Q ss_pred HHHhhhhcccCCccCCCCCcEEEEEEcCCCCcccc--ccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCC
Q psy12680 1400 IIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKE--EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPP 1477 (2567)
Q Consensus 1400 ~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d--~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Pp 1477 (2567)
.+..-++.-.+ .+.++|+|||++++-... .-|+.-.-.+|...+..| ++++|||.+++
T Consensus 258 ~lk~~~~~~~~------~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--------------~l~~IgaTt~~ 317 (857)
T PRK10865 258 RLKGVLNDLAK------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLD 317 (857)
T ss_pred HHHHHHHHHHH------cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--------------CCeEEEcCCCH
Confidence 22222211100 135699999999975422 123333445555555432 47789999887
Q ss_pred CCC--CCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1478 STG--NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1478 ggg--~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.-. ....+-+.|.|..+.++.|+.+....|+..+..
T Consensus 318 e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 318 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred HHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhh
Confidence 654 346788999999999999999999998876553
No 39
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=8.4e-05 Score=100.34 Aligned_cols=181 Identities=21% Similarity=0.289 Sum_probs=116.2
Q ss_pred CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCccCC
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGP 1415 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~~gp 1415 (2567)
.+||+||||+|||.+.++.- ..|-.+.-..+.++.|-+-...++.++| |+
T Consensus 523 sFlF~GPTGVGKTELAkaLA------------------~~Lfg~e~aliR~DMSEy~EkHsVSrLI------------Ga 572 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALA------------------EALFGDEQALIRIDMSEYMEKHSVSRLI------------GA 572 (786)
T ss_pred EEEeeCCCcccHHHHHHHHH------------------HHhcCCCccceeechHHHHHHHHHHHHh------------CC
Confidence 35889999999999887522 2222233456778888888777787776 65
Q ss_pred CCC----------------c-EEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCC
Q psy12680 1416 PLG----------------K-RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPS 1478 (2567)
Q Consensus 1416 ~~g----------------K-~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppg 1478 (2567)
|+| | .+||..|+|-=.-+| +..+|=|.+|.|-.-|.+ ...+...|+-++.+.|-.+
T Consensus 573 PPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpd------V~nilLQVlDdGrLTD~~-Gr~VdFrNtiIImTSN~Gs 645 (786)
T COG0542 573 PPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPD------VFNLLLQVLDDGRLTDGQ-GRTVDFRNTIIIMTSNAGS 645 (786)
T ss_pred CCCCceeccccchhHhhhcCCCeEEEechhhhcCHH------HHHHHHHHhcCCeeecCC-CCEEecceeEEEEecccch
Confidence 542 3 589999998776666 558899999999988854 3445667778888777542
Q ss_pred C-------C------------------CCCCcchhcccc-ceeccCCCHHHHHHHHHHHHHhh---hcccCCcccchhHH
Q psy12680 1479 T-------G------------------NTVTPRFSRHFN-QIVINKFDDDTMVTIFSKILLWH---LDTRGFSKEFDPCI 1529 (2567)
Q Consensus 1479 g-------g------------------~~is~Rf~r~f~-vi~i~~p~~~sL~~If~~il~~~---l~~~gf~~~v~~~~ 1529 (2567)
. + +...|.|+..+- ++.+.+.+.+.+..|....|... +..++..-++...
T Consensus 646 ~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~- 724 (786)
T COG0542 646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDE- 724 (786)
T ss_pred HHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHH-
Confidence 1 0 012344554454 78888999999999988766432 2233444333322
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHH
Q psy12680 1530 EQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQG 1569 (2567)
Q Consensus 1530 ~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qG 1569 (2567)
+.....+..+ -=.|+-|-|.|++|.
T Consensus 725 --a~~~l~~~gy-------------d~~~GARpL~R~Iq~ 749 (786)
T COG0542 725 --AKDFLAEKGY-------------DPEYGARPLRRAIQQ 749 (786)
T ss_pred --HHHHHHHhcc-------------CCCcCchHHHHHHHH
Confidence 1111111111 114788988888884
No 40
>KOG0733|consensus
Probab=98.11 E-value=2e-05 Score=100.25 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=57.8
Q ss_pred CcEEEEEEcCCCCccccccCCCChHH--HHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcccccee
Q psy12680 1418 GKRCVVFVDDVNMPLKEEFGAQPPIE--ILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIV 1495 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d~yGtQ~~ie--lLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~vi~ 1495 (2567)
.--||||||||.--.+..=++|.=.| +.-||+.. -|.-...-.+=..|-.|+|.|-|-.=.+-..|-.|.=+=|+
T Consensus 281 ~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~---mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~ 357 (802)
T KOG0733|consen 281 NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTS---MDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREIC 357 (802)
T ss_pred cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHh---hhcccccccCCCCeEEEecCCCCcccCHHHhccccccceee
Confidence 34599999999876665545665443 34555442 11111111111347788888877543222234445556688
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q psy12680 1496 INKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1496 i~~p~~~sL~~If~~il~~~ 1515 (2567)
+.-|+..+=..|...|+++.
T Consensus 358 l~vP~e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 358 LGVPSETAREEILRIICRGL 377 (802)
T ss_pred ecCCchHHHHHHHHHHHhhC
Confidence 99999999999999888653
No 41
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.06 E-value=9.7e-05 Score=104.81 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=57.9
Q ss_pred cEEEEEEcCCCCcccc--ccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC--CCCCcchhccccce
Q psy12680 1419 KRCVVFVDDVNMPLKE--EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFNQI 1494 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~d--~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg--~~is~Rf~r~f~vi 1494 (2567)
+.+|+|||++++-... .-|+.....+|+..+..| ++++|||.+++.-. ...++.+.|.|..+
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g--------------~i~~IgaTt~~e~r~~~~~d~al~rRf~~i 331 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG--------------ELHCIGATTLDEYRKYIEKDAALERRFQPV 331 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC--------------ceEEEEeCcHHHHHHHhhcCHHHHhcCCEE
Confidence 5799999999964321 123333445555554321 47889998876544 34688999999999
Q ss_pred eccCCCHHHHHHHHHHHHHh
Q psy12680 1495 VINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1495 ~i~~p~~~sL~~If~~il~~ 1514 (2567)
.++.|+.+....|+..+...
T Consensus 332 ~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 332 FVDEPTVEDTISILRGLKER 351 (852)
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999988765433
No 42
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.01 E-value=0.021 Score=84.52 Aligned_cols=84 Identities=20% Similarity=0.335 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhccHHH
Q psy12680 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQ-RAEDLIGKLGGEKERWSS 2420 (2567)
Q Consensus 2342 ~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~-rA~~Li~~L~~Ek~RW~~ 2420 (2567)
..+++.++++...+.+.+...+.+..+++..-+....++..+.++.++++.+++.++..|. ....|..=|..+.+-|++
T Consensus 475 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~ 554 (1201)
T PF12128_consen 475 DKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQ 554 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHH
Confidence 3344444445555555555555555555555555555555555555556666666666665 455666779999999999
Q ss_pred HHHHH
Q psy12680 2421 TAKML 2425 (2567)
Q Consensus 2421 ~~~~l 2425 (2567)
++...
T Consensus 555 tIGKV 559 (1201)
T PF12128_consen 555 TIGKV 559 (1201)
T ss_pred HhHhh
Confidence 87654
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.95 E-value=0.028 Score=84.21 Aligned_cols=25 Identities=24% Similarity=0.054 Sum_probs=20.5
Q ss_pred cccEEEEcCCCCChHHHHHHHHHHH
Q psy12680 1805 RWGFMIVGLSFAGKTCAYRMLSEAL 1829 (2567)
Q Consensus 1805 r~~~lLVG~~GSGK~sl~rlla~~l 1829 (2567)
.|-.+++|+.|||||++.-.+.+++
T Consensus 23 ~~~~~i~G~NGsGKS~ildAi~~~l 47 (1164)
T TIGR02169 23 KGFTVISGPNGSGKSNIGDAILFAL 47 (1164)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999988777655
No 44
>KOG0994|consensus
Probab=97.94 E-value=0.036 Score=74.84 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=59.3
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12680 2335 AKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLG 2412 (2567)
Q Consensus 2335 ~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~ 2412 (2567)
...+.-.++.|.+++++...+++.+..+-+.+.+++.++++|+.++.+...++...++.+..++.+-.+|+....-|.
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq 1667 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQ 1667 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888888888888888888899999999999988888777777777666666666666665555443
No 45
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.89 E-value=0.026 Score=84.62 Aligned_cols=25 Identities=24% Similarity=0.025 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHHH
Q psy12680 1806 WGFMIVGLSFAGKTCAYRMLSEALQ 1830 (2567)
Q Consensus 1806 ~~~lLVG~~GSGK~sl~rlla~~l~ 1830 (2567)
|-.++|||+|||||++...+.++++
T Consensus 24 ~~~~i~G~NGsGKS~ll~ai~~~lg 48 (1179)
T TIGR02168 24 GITGIVGPNGCGKSNIVDAIRWVLG 48 (1179)
T ss_pred CcEEEECCCCCChhHHHHHHHHHHc
Confidence 3479999999999999987776653
No 46
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.89 E-value=1.3e-05 Score=102.62 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=56.3
Q ss_pred CcEEEEEEcCCCCccccc-cCCCChHHHHHHHhhcc--c-------ccccCcc-eeeeeeeeeeeeecCCCCCC-CCCCc
Q psy12680 1418 GKRCVVFVDDVNMPLKEE-FGAQPPIEILRQWLDHW--M-------WYDRKDV-VAVKLIEIQLMCAMGPPSTG-NTVTP 1485 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d~-yGtQ~~ielLRQlid~~--g-------~ydr~~~-~~~~i~diq~v~am~Ppggg-~~is~ 1485 (2567)
++.+|++||+||++.+++ ||.+ ++++|++ | .|+..+. .+.--.|+.++|+||....+ ..++.
T Consensus 271 ~~~~vliIDEINRani~kiFGel------~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~ 344 (459)
T PRK11331 271 EKKYVFIIDEINRANLSKVFGEV------MMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDY 344 (459)
T ss_pred cCCcEEEEehhhccCHHHhhhhh------hhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccH
Confidence 467999999999999997 6663 6777754 2 3433222 34445799999999999876 56888
Q ss_pred chhccccceeccC
Q psy12680 1486 RFSRHFNQIVINK 1498 (2567)
Q Consensus 1486 Rf~r~f~vi~i~~ 1498 (2567)
-|.|.|..+.+..
T Consensus 345 AlrRRF~fi~i~p 357 (459)
T PRK11331 345 ALRRRFSFIDIEP 357 (459)
T ss_pred HHHhhhheEEecC
Confidence 8999999887754
No 47
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.87 E-value=0.096 Score=73.06 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=49.3
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy12680 2337 IVGPKKEALRQAEEKLQLAMSALHE--KQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGE 2414 (2567)
Q Consensus 2337 ~V~Pk~~~l~~ae~~l~~a~~~L~~--~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~E 2414 (2567)
.+.-++.++++++.++.....+|.. ..+.++++.+++..++.++++...++..++++++..+.+++..++-+..+...
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666654 23455666666666666666666666666666666666666666655555555
Q ss_pred hccHHH
Q psy12680 2415 KERWSS 2420 (2567)
Q Consensus 2415 k~RW~~ 2420 (2567)
..++..
T Consensus 472 ~~~~~~ 477 (650)
T TIGR03185 472 KINAFE 477 (650)
T ss_pred HHhhhh
Confidence 544433
No 48
>KOG1051|consensus
Probab=97.84 E-value=0.00033 Score=95.95 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=69.8
Q ss_pred HHHHHHhhhcccCcccCCCCCceeEEEeccCCCCccc--ccCCCChHHHHHHhhhccccccc---cchhhhhhhhhhhhh
Q psy12680 910 QDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKE--EFGAQPPIEILRQWLDHWMWYDR---KDVVAVKLIEIQLMC 984 (2567)
Q Consensus 910 q~~i~~~lekr~~~~~gp~~~k~~~~fiDD~nmp~~~--~~g~q~~~ellrQ~~~~~~~yd~---~~~~~~~~~~~~~~~ 984 (2567)
..=+|.+++...+.+.. .|+..|+|+|||++--.. .||+--...+|.-++..||..=- ...+|.+.+
T Consensus 261 rge~E~rlk~l~k~v~~--~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~i------ 332 (898)
T KOG1051|consen 261 RGEFEERLKELLKEVES--GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGATTLETYRKCI------ 332 (898)
T ss_pred chHHHHHHHHHHHHHhc--CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEecccHHHHHHHH------
Confidence 34466666666665555 788899999999986544 37778888999999999863200 111121111
Q ss_pred ccCCCCCCCCcCcccccccceeeeccCCchhhHHHHHHHHhh
Q psy12680 985 AMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLW 1026 (2567)
Q Consensus 985 a~~p~~~~~~i~~r~~r~f~~~~~~~~~~~~l~~i~~~~l~~ 1026 (2567)
.-.|-|.|+|..+.++.|+...+..|+-.+-..
T Consensus 333 ---------ekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 333 ---------EKDPALERRWQLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ---------hhCcchhhCcceeEeccCcccchhhhhhhhhhh
Confidence 235679999999999999999888887765543
No 49
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.84 E-value=0.1 Score=77.34 Aligned_cols=27 Identities=22% Similarity=0.016 Sum_probs=23.3
Q ss_pred cccEEEEcCCCCChHHHHHHHHHHHHH
Q psy12680 1805 RWGFMIVGLSFAGKTCAYRMLSEALQL 1831 (2567)
Q Consensus 1805 r~~~lLVG~~GSGK~sl~rlla~~l~~ 1831 (2567)
+|-..+|||.||||+.+.-.+.++++.
T Consensus 24 ~~~t~IvGPNGSGKSNI~DAi~fVLG~ 50 (1163)
T COG1196 24 PGFTAIVGPNGSGKSNIVDAIRFVLGE 50 (1163)
T ss_pred CCCeEEECCCCCchHHHHHHHHHHhCc
Confidence 455899999999999999998888764
No 50
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.82 E-value=0.00025 Score=99.65 Aligned_cols=123 Identities=27% Similarity=0.306 Sum_probs=75.5
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccCCchh------H-H
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRIDVEV------L-S 70 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri~~~v------L-S 70 (2567)
..||+|||||..++.+|+.+|.+++.+||++-++ .+.+..+|.-+.. ..+-.++||++.+...- + .
T Consensus 217 L~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~ 296 (733)
T TIGR01243 217 LYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEK 296 (733)
T ss_pred EECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHH
Confidence 5799999999999999999999999999986432 2345556654332 23668999998874321 1 1
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaEi~L 145 (2567)
-+-.++.++.+.+..+. ..-++.|.|+- ..|++.|+. +-|.+.+-.||..--.+|+.
T Consensus 297 ~~~~~Ll~~ld~l~~~~--------------~vivI~atn~~----~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~ 356 (733)
T TIGR01243 297 RVVAQLLTLMDGLKGRG--------------RVIVIGATNRP----DALDPALRRPGRFDREIVIRVPDKRARKEILK 356 (733)
T ss_pred HHHHHHHHHhhccccCC--------------CEEEEeecCCh----hhcCHHHhCchhccEEEEeCCcCHHHHHHHHH
Confidence 11222333223322211 12233355642 346666664 33578888999887666643
No 51
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.77 E-value=0.00014 Score=95.12 Aligned_cols=160 Identities=17% Similarity=0.170 Sum_probs=97.6
Q ss_pred HHHHHHHhcC--CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhcc--ccccceeeccccccCHHHHHHH
Q psy12680 1325 ALMKLLVTHQ--KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSI--EQWQPLIMNFSAQTSANQTQDI 1400 (2567)
Q Consensus 1325 ~ll~~ll~~~--~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~--~~~~~~~lnfSa~Tts~~~q~~ 1400 (2567)
..+...+.++ .+++++||+|||||++++..+ +.+.. ..+..+.+|+...+++..+...
T Consensus 44 ~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~------------------~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 44 FALRPALRGSRPLNVLIYGPPGTGKTTTVKKVF------------------EELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred HHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHH------------------HHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 3344445443 458999999999999886432 22221 2467788999888877766655
Q ss_pred HHhhhhcc----cCCcc----------CCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeee
Q psy12680 1401 IMSKLDKR----RKGVY----------GPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLI 1466 (2567)
Q Consensus 1401 ies~lekr----~~~~~----------gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~ 1466 (2567)
|-..+... ++..+ -...++.+||++||+..-. +..+.+....|+|.+-+..+ .
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~-~~~~~~~l~~l~~~~~~~~~------------~ 172 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF-EKEGNDVLYSLLRAHEEYPG------------A 172 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh-ccCCchHHHHHHHhhhccCC------------C
Confidence 55555321 11000 0123567999999998765 33344445556664433211 1
Q ss_pred eeeeeeecCCCCCCCCCCcchhccc--cceeccCCCHHHHHHHHHHHHHhh
Q psy12680 1467 EIQLMCAMGPPSTGNTVTPRFSRHF--NQIVINKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1467 diq~v~am~Ppggg~~is~Rf~r~f--~vi~i~~p~~~sL~~If~~il~~~ 1515 (2567)
++.++++.+++.--..+.+|..+.| ..+.++.++.+.+..|+..-+...
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~ 223 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG 223 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh
Confidence 4567777666543223566655555 467888999999999988766543
No 52
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67 E-value=4.3e-05 Score=105.44 Aligned_cols=98 Identities=27% Similarity=0.418 Sum_probs=72.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhh------hhhh-----------cCccccccccccCCchh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFK------GLIA-----------TGAWACFDEFNRIDVEV 68 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~------Gl~q-----------~GaW~CFDEfNri~~~v 68 (2567)
.||+|||||+++|.||+.+|.+++.|||++-++...+.+++. |--+ ..+=.+||||++++++|
T Consensus 494 ~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v 573 (758)
T PRK11034 494 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDV 573 (758)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHH
Confidence 599999999999999999999999999999888777777763 1111 23458899999999998
Q ss_pred HHHHHHHHHhhhhhhhcCCceEE-EcCeEEEeeCceeEEEEeCCCC
Q psy12680 69 LSVVAQQILTIQRGVTLGEEEIL-FEGTILKLDRTCSVFITMNPGY 113 (2567)
Q Consensus 69 LSvvaqqi~~Iq~a~~~~~~~~~-f~g~~i~l~~~~~iFiTmNPgY 113 (2567)
...+-|.+.. . .+. -.|+.+.+ .+|=+++|-|-|.
T Consensus 574 ~~~LLq~ld~---G------~ltd~~g~~vd~-rn~iiI~TsN~g~ 609 (758)
T PRK11034 574 FNLLLQVMDN---G------TLTDNNGRKADF-RNVVLVMTTNAGV 609 (758)
T ss_pred HHHHHHHHhc---C------eeecCCCceecC-CCcEEEEeCCcCH
Confidence 8877776641 1 111 12444444 4556778888664
No 53
>KOG0735|consensus
Probab=97.65 E-value=0.00021 Score=92.69 Aligned_cols=142 Identities=14% Similarity=0.233 Sum_probs=77.4
Q ss_pred HhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccC
Q psy12680 1331 VTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRK 1410 (2567)
Q Consensus 1331 l~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~ 1410 (2567)
+....++||.||||||||-++.+... ...++|=+---|+-+-+-| +.-|..-+
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~--------------------------~~~~~fisvKGPElL~KyI-GaSEq~vR 750 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIAS--------------------------NSNLRFISVKGPELLSKYI-GASEQNVR 750 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHh--------------------------hCCeeEEEecCHHHHHHHh-cccHHHHH
Confidence 34567899999999999977754211 1112332333333222222 01111111
Q ss_pred CccC-CCCCcEEEEEEcCCCCccccc----cC--CCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCC
Q psy12680 1411 GVYG-PPLGKRCVVFVDDVNMPLKEE----FG--AQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTV 1483 (2567)
Q Consensus 1411 ~~~g-p~~gK~~vvFiDDiNmP~~d~----yG--tQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~i 1483 (2567)
..|- +...|-||+|+|++.--++-. -| ..-+..||.|+=.-.| +..+.++||..-|. -+
T Consensus 751 ~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg-----------l~GV~i~aaTsRpd---li 816 (952)
T KOG0735|consen 751 DLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG-----------LDGVYILAATSRPD---LI 816 (952)
T ss_pred HHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc-----------cceEEEEEecCCcc---cc
Confidence 1122 336788999999998766532 22 1233455555522211 34566677655432 24
Q ss_pred Ccchh---ccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1484 TPRFS---RHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1484 s~Rf~---r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+|-++ |.=..++++.|+..+--.|+..+..
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSN 849 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh
Confidence 44333 3344577899999999999987664
No 54
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.62 E-value=6.3e-05 Score=86.33 Aligned_cols=71 Identities=27% Similarity=0.349 Sum_probs=59.3
Q ss_pred CCCCCCCchhHHHHHHHHhcC----eEEEEeCCCCcc----HHHHHHhhh------hhhhcCccccccccccCCc-----
Q psy12680 6 EGPAGTGKTETTKDLAKAVAK----LCIVFNCSDSMD----YIGLGKFFK------GLIATGAWACFDEFNRIDV----- 66 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~----~~~vfNCs~~~d----~~~m~rif~------Gl~q~GaW~CFDEfNri~~----- 66 (2567)
.||.|+||||++|.||+.|+. +++++||++-.+ ..++++.+. |..+.| =.+||||.++..
T Consensus 9 ~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~g-VVllDEidKa~~~~~~~ 87 (171)
T PF07724_consen 9 AGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGG-VVLLDEIDKAHPSNSGG 87 (171)
T ss_dssp ESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHT-EEEEETGGGCSHTTTTC
T ss_pred ECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchh-hhhhHHHhhcccccccc
Confidence 699999999999999999995 999999999988 666666553 344445 789999999999
Q ss_pred ------hhHHHHHHHHH
Q psy12680 67 ------EVLSVVAQQIL 77 (2567)
Q Consensus 67 ------~vLSvvaqqi~ 77 (2567)
.|...+-|-+.
T Consensus 88 ~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 88 ADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhc
Confidence 88888877775
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.59 E-value=9.3e-05 Score=104.07 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=81.9
Q ss_pred EEEEEcCCCCccccccCCCChHHHHHHHhhc---ccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccccceecc
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQPPIEILRQWLDH---WMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVIN 1497 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~---~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~vi~i~ 1497 (2567)
-|+|+|+++--..+..|. |...|.+++|- +.|-|..-..-....++.|+++.|++ ..+++-|++.|.++.++
T Consensus 416 ~villDEidk~~~~~~~~--~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~---~~i~~~L~~R~~vi~~~ 490 (775)
T TIGR00763 416 PLFLLDEIDKIGSSFRGD--PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI---DTIPRPLLDRMEVIELS 490 (775)
T ss_pred CEEEEechhhcCCccCCC--HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc---hhCCHHHhCCeeEEecC
Confidence 488999988766654443 55667777763 34444321122344577889999975 35788888999999999
Q ss_pred CCCHHHHHHHHHHHHHh-hhcccCCcccchhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhc
Q psy12680 1498 KFDDDTMVTIFSKILLW-HLDTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLL 1572 (2567)
Q Consensus 1498 ~p~~~sL~~If~~il~~-~l~~~gf~~~v~~~~~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~ 1572 (2567)
.|+.+....|....+.. .+...|...+--...+....+.+.-|. + .++.|+|.|.++.+++
T Consensus 491 ~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~-------------~-e~g~R~l~r~i~~~~~ 552 (775)
T TIGR00763 491 GYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT-------------R-EAGVRNLERQIEKICR 552 (775)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC-------------h-hcCChHHHHHHHHHHH
Confidence 99999999999876532 222233322100112222222222121 1 3789999999887664
No 56
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.55 E-value=0.00032 Score=86.54 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=49.6
Q ss_pred EEEEEcCCCCccccc---cCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC--CCCCcchhccc-cce
Q psy12680 1421 CVVFVDDVNMPLKEE---FGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHF-NQI 1494 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~---yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg--~~is~Rf~r~f-~vi 1494 (2567)
.|+|+||++.-..+. +| ...+..|.+.++.+. .++.++++..|.... ..++|.+.+.| ..+
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~-~~~i~~Ll~~~e~~~------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i 173 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFG-KEAIDTLVKGMEDNR------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISI 173 (261)
T ss_pred CEEEEechhhhccCCccchH-HHHHHHHHHHHhccC------------CCEEEEecCCcchhHHHHhcChHHHhccceEE
Confidence 499999998744321 22 223444444444321 224455554432221 24678888888 458
Q ss_pred eccCCCHHHHHHHHHHHHHh
Q psy12680 1495 VINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1495 ~i~~p~~~sL~~If~~il~~ 1514 (2567)
.++.++.+.+..|+..++..
T Consensus 174 ~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 174 DFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EECCCCHHHHHHHHHHHHHH
Confidence 89999999999999887754
No 57
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.53 E-value=0.00041 Score=89.22 Aligned_cols=153 Identities=21% Similarity=0.260 Sum_probs=104.0
Q ss_pred HHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccC--CCCCCCcchHH
Q psy12680 358 IYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDA--VSHEWSDGILA 435 (2567)
Q Consensus 358 Lye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~--~T~EW~DGvls 435 (2567)
+...+..++.+++.||||+|||++.+.|+..+.. +.....+......| +.+..++-|.+-| ..-+|.+|+|.
T Consensus 187 l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~-----~~~~~~v~~VtFHp-sySYeDFI~G~rP~~vgy~~~~G~f~ 260 (459)
T PRK11331 187 ILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTG-----EKAPQRVNMVQFHQ-SYSYEDFIQGYRPNGVGFRRKDGIFY 260 (459)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcC-----CcccceeeEEeecc-cccHHHHhcccCCCCCCeEecCchHH
Confidence 3444556889999999999999999999988741 11112333333333 3444455444433 34579999999
Q ss_pred HHHHHHHhcCCCCceEEEeC----CCCCHHHHHHHHhhhcCCc-----eeEec----ccceeecCCCCeEEEecCC----
Q psy12680 436 VSYRQFAMSQNENRKWLIFD----GPVDAIWIENMNSVLDDNK-----KLCLM----SGEIIALAPTTSLIFEPQD---- 498 (2567)
Q Consensus 436 ~i~R~~~~~~~~~~~WivfD----GpVDa~WIEnLNSVLDDNK-----~LtL~----nGErI~l~~~~~llFEv~d---- 498 (2567)
.+.+++... ....+|+|+| |+++..+=|.+. +|+..+ .+.|+ ++|++.+|+|+.+|==+..
T Consensus 261 ~~~~~A~~~-p~~~~vliIDEINRani~kiFGel~~-lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs 338 (459)
T PRK11331 261 NFCQQAKEQ-PEKKYVFIIDEINRANLSKVFGEVMM-LMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRS 338 (459)
T ss_pred HHHHHHHhc-ccCCcEEEEehhhccCHHHhhhhhhh-hccccccccccceeeeccccccccccCCCCeEEEEecCccccc
Confidence 988875433 3456899998 788888888765 566432 23443 3579999999999876532
Q ss_pred cCcCCcceeeeceeEEecCC
Q psy12680 499 LEVASPATVSRCGMIYMEPA 518 (2567)
Q Consensus 499 L~~ASPATVSRcGmVy~~~~ 518 (2567)
+....+|.-=|-.+|.+.|+
T Consensus 339 ~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 339 LAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred hhhccHHHHhhhheEEecCC
Confidence 33577888888888888874
No 58
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.50 E-value=0.00024 Score=77.55 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=52.1
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCc------cHHHHHHhhhhhhhcC--ccccccccccCCchh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSM------DYIGLGKFFKGLIATG--AWACFDEFNRIDVEV 68 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~------d~~~m~rif~Gl~q~G--aW~CFDEfNri~~~v 68 (2567)
.||+|||||.+++.+|+.+|.+++-++|++-. ..+.+..+|.=+...+ +=.++|||..+....
T Consensus 4 ~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred ECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 69999999999999999999999999999887 3445555555544445 777899999999887
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.48 E-value=0.00023 Score=78.40 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=75.8
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhh----------hhhhhcCccccccccccCCchhHHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFF----------KGLIATGAWACFDEFNRIDVEVLSV 71 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif----------~Gl~q~GaW~CFDEfNri~~~vLSv 71 (2567)
..||+|||||.+++.+++.+ +.+++.++|++........... ......+....+||++++..+....
T Consensus 24 i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~ 103 (151)
T cd00009 24 LYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNA 103 (151)
T ss_pred EECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHH
Confidence 47999999999999999999 9999999999876544433211 2233356789999999997776666
Q ss_pred HHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc
Q psy12680 72 VAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF 127 (2567)
Q Consensus 72 vaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF 127 (2567)
+-+.+....... ..+..+.+++|.|+... ..+++.++.-|
T Consensus 104 ~~~~i~~~~~~~--------------~~~~~~~ii~~~~~~~~--~~~~~~~~~r~ 143 (151)
T cd00009 104 LLRVLETLNDLR--------------IDRENVRVIGATNRPLL--GDLDRALYDRL 143 (151)
T ss_pred HHHHHHhcCcee--------------ccCCCeEEEEecCcccc--CCcChhHHhhh
Confidence 666665543321 23456677888887664 56666766655
No 60
>KOG0979|consensus
Probab=97.43 E-value=0.11 Score=70.83 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhchHH
Q psy12680 2081 KVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFL 2122 (2567)
Q Consensus 2081 ~~k~~el~~~~~rl~~GL~KL~ea~~~V~~l~~~L~~~qp~L 2122 (2567)
..+..++.....|+..-+.+|.+...-++.++++|+.....+
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et 288 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKET 288 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhH
Confidence 456667778888999999999999888888888887643333
No 61
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.42 E-value=0.19 Score=70.16 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q psy12680 1808 FMIVGLSFAGKTCAYRMLSEA 1828 (2567)
Q Consensus 1808 ~lLVG~~GSGK~sl~rlla~~ 1828 (2567)
.+++|++|+||||+.+.+..+
T Consensus 31 ~~i~G~Ng~GKttll~ai~~~ 51 (650)
T TIGR03185 31 ILIGGLNGAGKTTLLDAIQLA 51 (650)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 588999999999999977643
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.40 E-value=0.0005 Score=87.67 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=86.2
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhhhhc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTL 85 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~ 85 (2567)
.||+|||||++++.+|+.+|..+.+.+++.--....+..++..+. .|...++||+++++..+...+ ..++..
T Consensus 57 ~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~vl~IDEi~~l~~~~~e~l-------~~~~e~ 128 (328)
T PRK00080 57 YGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLE-EGDVLFIDEIHRLSPVVEEIL-------YPAMED 128 (328)
T ss_pred ECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcc-cCCEEEEecHhhcchHHHHHH-------HHHHHh
Confidence 799999999999999999999998888765555556777777654 578899999999986543322 233333
Q ss_pred CCceEEEcC----eEE--EeeCceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHHH
Q psy12680 86 GEEEILFEG----TIL--KLDRTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 86 ~~~~~~f~g----~~i--~l~~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~L 145 (2567)
....+.+.+ ..+ .+.+-|-|..|-+++ .|+.-|++=| ..+.+-.|+..-+.+++-
T Consensus 129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~ 190 (328)
T PRK00080 129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVK 190 (328)
T ss_pred cceeeeeccCccccceeecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 322333321 122 344444444444432 4777788766 457888999998888864
No 63
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.40 E-value=0.17 Score=76.00 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.3
Q ss_pred cccccCCCCcccceeeh
Q psy12680 1337 VMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1337 vll~GptGTGKT~~i~~ 1353 (2567)
.+++||.|+|||.++.+
T Consensus 26 ~~i~G~NGsGKS~ildA 42 (1164)
T TIGR02169 26 TVISGPNGSGKSNIGDA 42 (1164)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 36799999999988754
No 64
>KOG0994|consensus
Probab=97.38 E-value=0.21 Score=68.04 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccCCC
Q psy12680 2174 VKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSN 2219 (2567)
Q Consensus 2174 ~~~~e~~~~~~~~~~~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~ 2219 (2567)
+..+.+.+++.++..+...+++.+.|++|.-+..+|+.|++..+..
T Consensus 1547 L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~ 1592 (1758)
T KOG0994|consen 1547 LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRD 1592 (1758)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444555555555556666777888888888888888777653
No 65
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.36 E-value=0.00032 Score=87.35 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=51.9
Q ss_pred EEEEEcCCCCcc-c--c-ccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC--CCCCcchhcccc-c
Q psy12680 1421 CVVFVDDVNMPL-K--E-EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFN-Q 1493 (2567)
Q Consensus 1421 ~vvFiDDiNmP~-~--d-~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg--~~is~Rf~r~f~-v 1493 (2567)
.|+|+||+..=. . + .+| +..++.|-++++.+. .++.+++|..++.-. ..++|.|.+.|. .
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~-~~~~~~Ll~~le~~~------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~ 189 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYG-QEAIEILLQVMENQR------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHH 189 (284)
T ss_pred cEEEEechhhhccCCCccchH-HHHHHHHHHHHhcCC------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcE
Confidence 599999997421 1 1 222 334555666666432 345667766554211 234677888774 5
Q ss_pred eeccCCCHHHHHHHHHHHHHh
Q psy12680 1494 IVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1494 i~i~~p~~~sL~~If~~il~~ 1514 (2567)
+.+|.++.+.+..|+..++..
T Consensus 190 i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 190 VDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEeCCcCHHHHHHHHHHHHHH
Confidence 889999999999999987754
No 66
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.36 E-value=0.00038 Score=88.71 Aligned_cols=157 Identities=16% Similarity=0.206 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHh
Q psy12680 1324 IALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMS 1403 (2567)
Q Consensus 1324 ~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies 1403 (2567)
...+...+..|.|++|.||||||||++++.. .+.+. .....++|...+++..+--...-
T Consensus 33 ~~~~l~a~~~~~~vll~G~PG~gKT~la~~l------------------A~~l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 33 IELALLALLAGGHVLLEGPPGVGKTLLARAL------------------ARALG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred HHHHHHHHHcCCCEEEECCCCccHHHHHHHH------------------HHHhC---CCeEEEecCCCCCHHHhcCchhH
Confidence 3445567789999999999999999988642 22222 45678999999999875543322
Q ss_pred hhh---cccCC-ccCCCC-CcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeee-eeeeeeecCCC
Q psy12680 1404 KLD---KRRKG-VYGPPL-GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLI-EIQLMCAMGPP 1477 (2567)
Q Consensus 1404 ~le---kr~~~-~~gp~~-gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~-diq~v~am~Pp 1477 (2567)
.-. .+... +=||-. +-++|+|+|+||...++. ...||.-+-|+..-..... . ..+. ...++++.||.
T Consensus 92 ~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~-----q~aLl~~l~e~~vtv~~~~-~-~~~~~~f~viaT~Np~ 164 (329)
T COG0714 92 AALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEV-----QNALLEALEERQVTVPGLT-T-IRLPPPFIVIATQNPG 164 (329)
T ss_pred hhhhccCCeEEEecCCcccccceEEEEeccccCCHHH-----HHHHHHHHhCcEEEECCcC-C-cCCCCCCEEEEccCcc
Confidence 222 11111 112211 111699999999977663 2334444444333322222 1 2332 35567777874
Q ss_pred C-CC-CCCCcchhccc-cceeccCCCHHHHHHHH
Q psy12680 1478 S-TG-NTVTPRFSRHF-NQIVINKFDDDTMVTIF 1508 (2567)
Q Consensus 1478 g-gg-~~is~Rf~r~f-~vi~i~~p~~~sL~~If 1508 (2567)
- .| .++++-+++.| ..+++++|..+....|.
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 3 34 56788888888 88999999555444433
No 67
>KOG0736|consensus
Probab=97.35 E-value=0.0021 Score=84.67 Aligned_cols=144 Identities=14% Similarity=0.238 Sum_probs=83.0
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccc-cccCHHHHHHHHHhhhhcccCC
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFS-AQTSANQTQDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfS-a~Tts~~~q~~ies~lekr~~~ 1411 (2567)
-+-.+||.|++|||||..|+..-..++ +..-++.+..+..+ ++++...++... ++-.
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg----------------~h~~evdc~el~~~s~~~~etkl~~~f-~~a~----- 487 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELG----------------LHLLEVDCYELVAESASHTETKLQAIF-SRAR----- 487 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhC----------------CceEeccHHHHhhcccchhHHHHHHHH-HHHh-----
Confidence 344579999999999988864221111 11112223333332 233333333321 1111
Q ss_pred ccCCCCCcEEEEEEcCCCCccccccC--CCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhc
Q psy12680 1412 VYGPPLGKRCVVFVDDVNMPLKEEFG--AQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSR 1489 (2567)
Q Consensus 1412 ~~gp~~gK~~vvFiDDiNmP~~d~yG--tQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r 1489 (2567)
....+|+|+-+++.=..|..| +-+...-+|+++.. +..-.+-..+.++|+++.. ..+++.+++
T Consensus 488 -----~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~-------e~~~~~~~~~ivv~t~~s~---~~lp~~i~~ 552 (953)
T KOG0736|consen 488 -----RCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSN-------EDFKFSCPPVIVVATTSSI---EDLPADIQS 552 (953)
T ss_pred -----hcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhc-------ccccCCCCceEEEEecccc---ccCCHHHHH
Confidence 114589999999888888887 34455667777761 1111122345667776532 346778887
Q ss_pred cc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1490 HF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1490 ~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+| +.|.++.|+++.=.+|+.-++.
T Consensus 553 ~f~~ei~~~~lse~qRl~iLq~y~~ 577 (953)
T KOG0736|consen 553 LFLHEIEVPALSEEQRLEILQWYLN 577 (953)
T ss_pred hhhhhccCCCCCHHHHHHHHHHHHh
Confidence 75 4688999999988777665543
No 68
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.33 E-value=0.00052 Score=90.54 Aligned_cols=87 Identities=22% Similarity=0.312 Sum_probs=53.6
Q ss_pred CCcEEEEEEcCCCCccccc-cCCCC--hHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhc--c
Q psy12680 1417 LGKRCVVFVDDVNMPLKEE-FGAQP--PIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSR--H 1490 (2567)
Q Consensus 1417 ~gK~~vvFiDDiNmP~~d~-yGtQ~--~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r--~ 1490 (2567)
.++.||+|+||+..-.... -|... --.++-|++.. -|+. ...++.+++|.|.|. .++|.++| .
T Consensus 287 ~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~--------~~~~ViVI~ATN~~d---~LDpALlRpGR 355 (512)
T TIGR03689 287 DGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE--------SLDNVIVIGASNRED---MIDPAILRPGR 355 (512)
T ss_pred cCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc--------cCCceEEEeccCChh---hCCHhhcCccc
Confidence 3567999999998654321 11111 01122333221 1221 123577888888764 37788876 4
Q ss_pred cc-ceeccCCCHHHHHHHHHHHHHh
Q psy12680 1491 FN-QIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1491 f~-vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
|. .|.++.|+.+....||..++..
T Consensus 356 fD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 356 LDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cceEEEeCCCCHHHHHHHHHHHhhc
Confidence 43 3889999999999999987754
No 69
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.29 E-value=0.0016 Score=84.36 Aligned_cols=163 Identities=12% Similarity=0.183 Sum_probs=92.7
Q ss_pred HHHHHHHhcC--CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhc--cccccceeeccccccCHHHHHHH
Q psy12680 1325 ALMKLLVTHQ--KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELS--IEQWQPLIMNFSAQTSANQTQDI 1400 (2567)
Q Consensus 1325 ~ll~~ll~~~--~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~--~~~~~~~~lnfSa~Tts~~~q~~ 1400 (2567)
..+...+.++ .+++++||+|||||++++..+..+. ...+ ...+..+.+||....+...+...
T Consensus 29 ~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~--------------~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 29 KALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE--------------EAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred HHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH--------------HHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 3444444443 4689999999999999875432111 0000 01156778888877666655555
Q ss_pred HHhhhhc--c----cCC--------c--cCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeee
Q psy12680 1401 IMSKLDK--R----RKG--------V--YGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVK 1464 (2567)
Q Consensus 1401 ies~lek--r----~~~--------~--~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~ 1464 (2567)
|-..+.. . ++. . +-...++.+||++||+..-... .+ ++|-+++. |++..+. .
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---~~---~~L~~l~~---~~~~~~~---~ 162 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---DD---DLLYQLSR---ARSNGDL---D 162 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---Cc---HHHHhHhc---cccccCC---C
Confidence 5555531 0 000 0 0112467899999998865411 12 23333332 1111000 1
Q ss_pred eeeeeeeeecCCCCCCCCCCcchhccc--cceeccCCCHHHHHHHHHHHHH
Q psy12680 1465 LIEIQLMCAMGPPSTGNTVTPRFSRHF--NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1465 i~diq~v~am~Ppggg~~is~Rf~r~f--~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
-..+.++++.|.+.--..+.+|..+.| ..+.+++++.+.+..|....+.
T Consensus 163 ~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 163 NAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 124667777776643334667777666 4678899999999999987765
No 70
>KOG0730|consensus
Probab=97.25 E-value=0.0034 Score=82.24 Aligned_cols=92 Identities=25% Similarity=0.327 Sum_probs=68.8
Q ss_pred CCCCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCc-----cHH-HHHHhhhh--hhhcCccccccccccCCc------h
Q psy12680 2 GGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSM-----DYI-GLGKFFKG--LIATGAWACFDEFNRIDV------E 67 (2567)
Q Consensus 2 GGap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~-----d~~-~m~rif~G--l~q~GaW~CFDEfNri~~------~ 67 (2567)
|--++||.|||||-++++.|+--|.+|++.||.+-+ ++. -+.++|.= .-+..+=.-.||.+-|-+ .
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~ 299 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD 299 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch
Confidence 556799999999999999999999999999998543 222 34455532 122255667799988763 4
Q ss_pred hHHHHHHHHHhhhhhhhcCCceEEEc
Q psy12680 68 VLSVVAQQILTIQRGVTLGEEEILFE 93 (2567)
Q Consensus 68 vLSvvaqqi~~Iq~a~~~~~~~~~f~ 93 (2567)
|.|-+..|+.+..+++....+.+.+.
T Consensus 300 ~e~Rv~sqlltL~dg~~~~~~vivl~ 325 (693)
T KOG0730|consen 300 VESRVVSQLLTLLDGLKPDAKVIVLA 325 (693)
T ss_pred HHHHHHHHHHHHHhhCcCcCcEEEEE
Confidence 58889999999999988766666653
No 71
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.00041 Score=75.63 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=78.2
Q ss_pred CCCCCCCCchhHHHHHHHHhcCe---EEEEeCCCCcc--------------------HHHHHHhhhhhhhcC-ccccccc
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKL---CIVFNCSDSMD--------------------YIGLGKFFKGLIATG-AWACFDE 60 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~---~~vfNCs~~~d--------------------~~~m~rif~Gl~q~G-aW~CFDE 60 (2567)
..||+|||||.+++.|++.++.. |+.++|+.... ...+..++..+.... ....+||
T Consensus 7 l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe 86 (148)
T smart00382 7 IVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86 (148)
T ss_pred EECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 47999999999999999999997 99999987543 334444555555544 8899999
Q ss_pred cccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcccccc
Q psy12680 61 FNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVA 131 (2567)
Q Consensus 61 fNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpva 131 (2567)
..++.....+........ ..............++.|.|+ .....|.+++..|+..-
T Consensus 87 i~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~ 142 (148)
T smart00382 87 ITSLLDAEQEALLLLLEE------------LRLLLLLKSEKNLTVILTTND---EKDLGPALLRRRFDRRI 142 (148)
T ss_pred CcccCCHHHHHHHHhhhh------------hHHHHHHHhcCCCEEEEEeCC---CccCchhhhhhccceEE
Confidence 999999888886655322 000011112345577888887 56677888876555443
No 72
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.21 E-value=0.00088 Score=84.59 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=87.6
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhhhh
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVT 84 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~ 84 (2567)
..||+|||||..++.+|+.+|..+.+.+++.-.....+...+..+ ..|.+.++||+++++.++... +.+++.
T Consensus 35 l~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vl~iDEi~~l~~~~~e~-------l~~~~~ 106 (305)
T TIGR00635 35 LYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL-EEGDVLFIDEIHRLSPAVEEL-------LYPAME 106 (305)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhc-ccCCEEEEehHhhhCHHHHHH-------hhHHHh
Confidence 479999999999999999999999999887766677777777765 356789999999999865433 233333
Q ss_pred cCCceEEEcC----eE--EEeeCceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHHH
Q psy12680 85 LGEEEILFEG----TI--LKLDRTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 85 ~~~~~~~f~g----~~--i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~L 145 (2567)
.....+.+.. +. +.+.|.+-|.+|-+|+ .|+.-|++=| ..+.+-.|+..-+.+++.
T Consensus 107 ~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~ 169 (305)
T TIGR00635 107 DFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVS 169 (305)
T ss_pred hhheeeeeccCccccceeecCCCeEEEEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHH
Confidence 3333333332 12 3445555555554442 4556666655 456777888888877764
No 73
>CHL00181 cbbX CbbX; Provisional
Probab=97.18 E-value=0.00078 Score=83.85 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=51.6
Q ss_pred EEEEEcCCCCcc-c---cccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC--CCCCcchhcccc-c
Q psy12680 1421 CVVFVDDVNMPL-K---EEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFN-Q 1493 (2567)
Q Consensus 1421 ~vvFiDDiNmP~-~---d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg--~~is~Rf~r~f~-v 1493 (2567)
.|+|+||+..-. . ..|| ...+..|.++++.+. .++.+|+|..+..-. ...+|.|.+.|. +
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~-~e~~~~L~~~me~~~------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~ 190 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYG-SEAIEILLQVMENQR------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANH 190 (287)
T ss_pred CEEEEEccchhccCCCccchH-HHHHHHHHHHHhcCC------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCce
Confidence 499999998631 1 1244 345667777776421 235566654332100 123477777776 5
Q ss_pred eeccCCCHHHHHHHHHHHHHh
Q psy12680 1494 IVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1494 i~i~~p~~~sL~~If~~il~~ 1514 (2567)
+.++.++.+.+..|+..++..
T Consensus 191 i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 191 VDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEcCCcCHHHHHHHHHHHHHH
Confidence 789999999999999988754
No 74
>KOG0736|consensus
Probab=97.17 E-value=0.0048 Score=81.45 Aligned_cols=119 Identities=21% Similarity=0.319 Sum_probs=75.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCC------ccHHHHHHhhhhh-hhcCcccccccc--------ccCCchhHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDS------MDYIGLGKFFKGL-IATGAWACFDEF--------NRIDVEVLS 70 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~------~d~~~m~rif~Gl-~q~GaW~CFDEf--------Nri~~~vLS 70 (2567)
.||.|+|||..|+..|+-||++++-+.|.+- .+-..+..+|.-. +..-|=.||-.| +-.+..+++
T Consensus 437 hG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~ 516 (953)
T KOG0736|consen 437 HGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLK 516 (953)
T ss_pred eCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHH
Confidence 5999999999999999999999999999653 3344444455432 223455555444 445667788
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccc-cccccCCCHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFR-TVAMMVPDYALISEI 143 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFR-pvam~~PD~~lIaEi 143 (2567)
++-+++. .+-|.|.+. ..-+-.|.+ .-..||.+++.+|+ .+.|-.|+-.-=.||
T Consensus 517 ~i~~~ls---------~e~~~~~~~------~~ivv~t~~----s~~~lp~~i~~~f~~ei~~~~lse~qRl~i 571 (953)
T KOG0736|consen 517 VIRHLLS---------NEDFKFSCP------PVIVVATTS----SIEDLPADIQSLFLHEIEVPALSEEQRLEI 571 (953)
T ss_pred HHHHHHh---------cccccCCCC------ceEEEEecc----ccccCCHHHHHhhhhhccCCCCCHHHHHHH
Confidence 8777776 122222221 111223333 13469999999998 456666766544444
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=97.17 E-value=0.0011 Score=88.82 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=85.3
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhc-------CccccccccccCCchh-HHHHHHHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIAT-------GAWACFDEFNRIDVEV-LSVVAQQI 76 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~-------GaW~CFDEfNri~~~v-LSvvaqqi 76 (2567)
..||+|||||.+++.||+.+|..++.+|+|+.-+...+.++....+.. +.-.++||+..|...- -..+...+
T Consensus 44 L~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~ 123 (482)
T PRK04195 44 LYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAIL 123 (482)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHH
Confidence 479999999999999999999999999999988888888887776653 4467899999987621 11122222
Q ss_pred HhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchh-hHhhccccccccCCCHHHHHHHHH
Q psy12680 77 LTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPD-NLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 77 ~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPd-nLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
..+. . +++.+.+|.|..|. ++. .|+..+..|.+-.|+...|..++-
T Consensus 124 ~~l~----~---------------~~~~iIli~n~~~~----~~~k~Lrsr~~~I~f~~~~~~~i~~~L~ 170 (482)
T PRK04195 124 ELIK----K---------------AKQPIILTANDPYD----PSLRELRNACLMIEFKRLSTRSIVPVLK 170 (482)
T ss_pred HHHH----c---------------CCCCEEEeccCccc----cchhhHhccceEEEecCCCHHHHHHHHH
Confidence 2221 1 12345556665443 343 788999999999999988877753
No 76
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.13 E-value=0.0018 Score=87.08 Aligned_cols=168 Identities=13% Similarity=0.261 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHhcCCC--c-ccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHH
Q psy12680 1321 LRNIALMKLLVTHQKP--V-MFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQT 1397 (2567)
Q Consensus 1321 ~R~~~ll~~ll~~~~p--v-ll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~ 1397 (2567)
-+...++...+.+..| + +++|+||||||++++..+..+.... ..-....+.++.|||...+++..+
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeea-----------eqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKT-----------KQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHH-----------hhccCCCceEEEEeCCccCCHHHH
Confidence 3445566666765444 3 5899999999999975432211000 000112366789999887777766
Q ss_pred HHHHHhhhhccc---CC--------ccC--C-CCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceee
Q psy12680 1398 QDIIMSKLDKRR---KG--------VYG--P-PLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAV 1463 (2567)
Q Consensus 1398 q~~ies~lekr~---~~--------~~g--p-~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~ 1463 (2567)
-..|-..|.... +. .|. + ..+..+||++|||+.=... ..++|.+|++ |.....
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------~QDVLYnLFR---~~~~s~---- 900 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------TQKVLFTLFD---WPTKIN---- 900 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------HHHHHHHHHH---HhhccC----
Confidence 555555553211 00 000 0 1123479999998854321 1255666665 222111
Q ss_pred eeeeeeeeeecCCCCCCCCCCcchhccccc--eeccCCCHHHHHHHHHHHHHh
Q psy12680 1464 KLIEIQLMCAMGPPSTGNTVTPRFSRHFNQ--IVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1464 ~i~diq~v~am~Ppggg~~is~Rf~r~f~v--i~i~~p~~~sL~~If~~il~~ 1514 (2567)
..+.++|.+|+-.-...+.||+.+.|.. +.+++++.+.|..|...-+..
T Consensus 901 --SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 901 --SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred --CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 1366778877533223456777766653 777999999999999877654
No 77
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.08 E-value=0.00073 Score=78.71 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=37.0
Q ss_pred CcEEEEEEcCCCCccccccCCCChHHHHHHHhhccccc-ccCcceeeeeeeeeeeeecCCCCCC
Q psy12680 1418 GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWY-DRKDVVAVKLIEIQLMCAMGPPSTG 1480 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~y-dr~~~~~~~i~diq~v~am~Ppggg 1480 (2567)
.-+=|+|+|++|.= ...+++.|||-++.|--. .|.......=.+.++++||||--.|
T Consensus 105 Ah~GVLflDE~~ef------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG 162 (206)
T PF01078_consen 105 AHRGVLFLDELNEF------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCG 162 (206)
T ss_dssp GTTSEEEECETTTS-------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----
T ss_pred hcCCEEEechhhhc------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccccc
Confidence 45679999999964 345899999999986554 3444444445689999999995444
No 78
>PRK06851 hypothetical protein; Provisional
Probab=97.07 E-value=0.011 Score=75.14 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.6
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.++-++|.|+||+||||+++.+++++.
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~ 239 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAE 239 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 356799999999999999999988873
No 79
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.06 E-value=0.0009 Score=86.78 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=76.0
Q ss_pred CCCCCCCCchhHHHHHHHHhcC--eEEEEeCCCCccHHHHH--------------Hhhhh-hhhcCccccccccccCCch
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAK--LCIVFNCSDSMDYIGLG--------------KFFKG-LIATGAWACFDEFNRIDVE 67 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~--~~~vfNCs~~~d~~~m~--------------rif~G-l~q~GaW~CFDEfNri~~~ 67 (2567)
..||+|||||..++.||+++++ +...++|.-+......| ++..| +..+. =.++||+||.+..
T Consensus 44 L~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~-lLfLDEI~rasp~ 122 (498)
T PRK13531 44 LLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE-IVFLDEIWKAGPA 122 (498)
T ss_pred EECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc-EEeecccccCCHH
Confidence 4799999999999999999875 44556665322222223 23334 21222 4789999999999
Q ss_pred hHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchh------hHhhccccccccCCCH
Q psy12680 68 VLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPD------NLKSLFRTVAMMVPDY 137 (2567)
Q Consensus 68 vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPd------nLk~lFRpvam~~PD~ 137 (2567)
++|.+-+.+. ...|..+|+..+++..+-+-.| | +||+ .|-.-| .+.+.+|-.
T Consensus 123 ~QsaLLeam~---------Er~~t~g~~~~~lp~rfiv~AT-N-------~LPE~g~~leAL~DRF-liri~vp~l 180 (498)
T PRK13531 123 ILNTLLTAIN---------ERRFRNGAHEEKIPMRLLVTAS-N-------ELPEADSSLEALYDRM-LIRLWLDKV 180 (498)
T ss_pred HHHHHHHHHH---------hCeEecCCeEEeCCCcEEEEEC-C-------CCcccCCchHHhHhhE-EEEEECCCC
Confidence 9998877663 2356668888998877655555 7 6886 455545 444444443
No 80
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.06 E-value=0.0012 Score=93.32 Aligned_cols=128 Identities=21% Similarity=0.269 Sum_probs=82.9
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHH------------HHhhhhhhhcC---ccccccccccCCchh-
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGL------------GKFFKGLIATG---AWACFDEFNRIDVEV- 68 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m------------~rif~Gl~q~G---aW~CFDEfNri~~~v- 68 (2567)
..||+|||||+++|.+|+.+|++++.++|+...|...+ |++..++..++ ....|||++++....
T Consensus 352 l~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~ 431 (775)
T TIGR00763 352 LVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFR 431 (775)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccC
Confidence 36999999999999999999999999999876664432 45555555544 367899999997532
Q ss_pred ---HHHHHHHHHhhhhhhhcCCceEE--EcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHH
Q psy12680 69 ---LSVVAQQILTIQRGVTLGEEEIL--FEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEI 143 (2567)
Q Consensus 69 ---LSvvaqqi~~Iq~a~~~~~~~~~--f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi 143 (2567)
.+++-+.+..-|+ ..|. +.|..+.+. ++-++.|-|+. ..||+-|..=|..|.+-.|+..-..+|
T Consensus 432 ~~~~~aLl~~ld~~~~------~~f~d~~~~~~~d~s-~v~~I~TtN~~----~~i~~~L~~R~~vi~~~~~~~~e~~~I 500 (775)
T TIGR00763 432 GDPASALLEVLDPEQN------NAFSDHYLDVPFDLS-KVIFIATANSI----DTIPRPLLDRMEVIELSGYTEEEKLEI 500 (775)
T ss_pred CCHHHHHHHhcCHHhc------CccccccCCceeccC-CEEEEEecCCc----hhCCHHHhCCeeEEecCCCCHHHHHHH
Confidence 2333222221111 1111 112222222 33345677863 469999999888888777776555444
No 81
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.05 E-value=0.001 Score=73.26 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=59.5
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGV 1412 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~ 1412 (2567)
.+.+++++||+|||||.+++... +.+.........++++...........++.. .....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~ 76 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIA------------------NELFRPGAPFLYLNASDLLEGLVVAELFGHF---LVRLL 76 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH------------------HHhhcCCCCeEEEehhhhhhhhHHHHHhhhh---hHhHH
Confidence 47899999999999998886432 2222223445556665554444333332210 00000
Q ss_pred c-CCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1413 Y-GPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1413 ~-gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
+ .....+..++++||++....+ ..+-+.+++.....+- ..-.++.++++.+++..
T Consensus 77 ~~~~~~~~~~~lilDe~~~~~~~------~~~~~~~~i~~~~~~~------~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 77 FELAEKAKPGVLFIDEIDSLSRG------AQNALLRVLETLNDLR------IDRENVRVIGATNRPLL 132 (151)
T ss_pred HHhhccCCCeEEEEeChhhhhHH------HHHHHHHHHHhcCcee------ccCCCeEEEEecCcccc
Confidence 1 112345679999999975221 2233344443322110 11245677888877654
No 82
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.04 E-value=0.0028 Score=83.03 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=55.0
Q ss_pred CceeEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCCCcCccccccc--ceee
Q psy12680 930 GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF--NQIV 1007 (2567)
Q Consensus 930 ~k~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~~i~~r~~r~f--~~~~ 1007 (2567)
++.++++||++..-. +..+.+....++|.+-+..+. ++.+|++.+++.--..+.||+.+.| ..+.
T Consensus 137 ~~~~viviDE~d~l~-~~~~~~~l~~l~~~~~~~~~~------------~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~ 203 (394)
T PRK00411 137 DRVLIVALDDINYLF-EKEGNDVLYSLLRAHEEYPGA------------RIGVIGISSDLTFLYILDPRVKSVFRPEEIY 203 (394)
T ss_pred CCEEEEEECCHhHhh-ccCCchHHHHHHHhhhccCCC------------eEEEEEEECCcchhhhcCHHHHhcCCcceee
Confidence 567999999998765 334444445555543332221 3556777776654444677666555 4678
Q ss_pred eccCCchhhHHHHHHHHhhh
Q psy12680 1008 INKFDDDTMVTIFSKILLWH 1027 (2567)
Q Consensus 1008 ~~~~~~~~l~~i~~~~l~~~ 1027 (2567)
++.++.+++..|+..-+..+
T Consensus 204 f~py~~~e~~~il~~r~~~~ 223 (394)
T PRK00411 204 FPPYTADEIFDILKDRVEEG 223 (394)
T ss_pred cCCCCHHHHHHHHHHHHHhh
Confidence 88899999999887766544
No 83
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.02 E-value=0.0019 Score=81.95 Aligned_cols=113 Identities=25% Similarity=0.314 Sum_probs=77.1
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhc------CccccccccccC-CchhHHHHHHHHHh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIAT------GAWACFDEFNRI-DVEVLSVVAQQILT 78 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~------GaW~CFDEfNri-~~~vLSvvaqqi~~ 78 (2567)
.||+|||||++++.+++.+|..++.+||++ .....+...+...++. +.=..+||++++ ..+....+ ..
T Consensus 49 ~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L----~~ 123 (316)
T PHA02544 49 SPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHL----RS 123 (316)
T ss_pred eCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHH----HH
Confidence 799999999999999999999999999998 3344444434443332 234689999988 33322222 22
Q ss_pred hhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHH
Q psy12680 79 IQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEI 143 (2567)
Q Consensus 79 Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi 143 (2567)
+. ... ..++-+.+|.|. ...|++.|++-|..+.+-.|+..-..++
T Consensus 124 ~l---e~~-------------~~~~~~Ilt~n~----~~~l~~~l~sR~~~i~~~~p~~~~~~~i 168 (316)
T PHA02544 124 FM---EAY-------------SKNCSFIITANN----KNGIIEPLRSRCRVIDFGVPTKEEQIEM 168 (316)
T ss_pred HH---Hhc-------------CCCceEEEEcCC----hhhchHHHHhhceEEEeCCCCHHHHHHH
Confidence 11 111 123445556663 3579999999999999989998766554
No 84
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.01 E-value=0.0009 Score=86.71 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=49.7
Q ss_pred cEEEEEEcCCCCccccccCCC-----ChHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcc--
Q psy12680 1419 KRCVVFVDDVNMPLKEEFGAQ-----PPIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRH-- 1490 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~d~yGtQ-----~~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~-- 1490 (2567)
..+|+|+||+..-....++++ .....+.+++.. .|+ + .-.++.+++|.|.|. .++|.++|.
T Consensus 238 ~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~-~-------~~~~v~VI~aTN~~d---~LDpAllR~GR 306 (398)
T PTZ00454 238 APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF-D-------QTTNVKVIMATNRAD---TLDPALLRPGR 306 (398)
T ss_pred CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc-C-------CCCCEEEEEecCCch---hCCHHHcCCCc
Confidence 348999999886543333222 111222233221 111 1 113567888888763 567777662
Q ss_pred c-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1491 F-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1491 f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
| ..+.++.|+.+.-..||..++.
T Consensus 307 fd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 307 LDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred ccEEEEeCCcCHHHHHHHHHHHHh
Confidence 2 4478999999999989986653
No 85
>KOG0735|consensus
Probab=97.01 E-value=0.0088 Score=78.30 Aligned_cols=145 Identities=17% Similarity=0.249 Sum_probs=82.7
Q ss_pred HhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccc-cceeecccc--ccCHHHHHHHHHhhhhc
Q psy12680 1331 VTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQW-QPLIMNFSA--QTSANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1331 l~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~-~~~~lnfSa--~Tts~~~q~~ies~lek 1407 (2567)
+-...+++|.||.|||||.+++..+. .++++.+ ....+.||. .++-+.+|+.++.-+..
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~------------------~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse 489 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFD------------------YYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSE 489 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHH------------------HhccccceEEEEEechhccchhHHHHHHHHHHHHHH
Confidence 44567899999999999999876432 2222222 233344543 35566788877664432
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCccc--------cccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPLK--------EEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~~--------d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
.-.|+|. ||..||+..-.- |..+.+....+|-|++...+=+++. +-++++.+--
T Consensus 490 --~~~~~PS-----iIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~---------ia~Iat~qe~-- 551 (952)
T KOG0735|consen 490 --ALWYAPS-----IIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRK---------IAVIATGQEL-- 551 (952)
T ss_pred --HHhhCCc-----EEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcE---------EEEEEechhh--
Confidence 2346665 778899876433 2333566778888888765544432 3444433211
Q ss_pred CCCCCcchh-cccc--ceeccCCCHHHHHHHHHHHH
Q psy12680 1480 GNTVTPRFS-RHFN--QIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1480 g~~is~Rf~-r~f~--vi~i~~p~~~sL~~If~~il 1512 (2567)
.+++|++. .+++ +..++.|....=..|...++
T Consensus 552 -qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 552 -QTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIF 586 (952)
T ss_pred -hhcChhhcCccceEEEEecCCcchhHHHHHHHHHH
Confidence 23455542 1222 34567777766555555443
No 86
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.00 E-value=0.0015 Score=90.21 Aligned_cols=137 Identities=20% Similarity=0.305 Sum_probs=74.3
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccc------ccCHHHHHHHHHhhhhc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSA------QTSANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa------~Tts~~~q~~ies~lek 1407 (2567)
.++++++||+|||||++++... +++. ...+.++.|. ..++..++++++..-
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a------------------~~~~---~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~-- 241 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIA------------------GEAK---VPFFTISGSDFVEMFVGVGASRVRDMFEQAK-- 241 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHH------------------HHcC---CCEEEEehHHhHHhhhcccHHHHHHHHHHHH--
Confidence 3569999999999998886421 1111 1112222221 233444555443321
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCccccc----cC-CCChHHHHHH-HhhcccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPLKEE----FG-AQPPIEILRQ-WLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~~d~----yG-tQ~~ielLRQ-lid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
....||+|+||++--.... -| ....-..+-| |.+..||++. .++.+++|+|+|..
T Consensus 242 ---------~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--------~~vivIaaTN~p~~-- 302 (644)
T PRK10733 242 ---------KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--------EGIIVIAATNRPDV-- 302 (644)
T ss_pred ---------hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--------CCeeEEEecCChhh--
Confidence 1123899999974321110 01 1111223333 3444566543 35778999998863
Q ss_pred CCCcchhc--cc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1482 TVTPRFSR--HF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1482 ~is~Rf~r--~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
++|.++| .| ..+.++.|+.+....|+...+.
T Consensus 303 -lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 303 -LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred -cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 3333332 12 3456899999998888876553
No 87
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.00 E-value=0.00089 Score=84.54 Aligned_cols=121 Identities=23% Similarity=0.303 Sum_probs=81.2
Q ss_pred CCCCCCCCchhHHHHHHHHh-------cCeEEEE--eCC-CC------------------------------ccHHHH--
Q psy12680 5 PEGPAGTGKTETTKDLAKAV-------AKLCIVF--NCS-DS------------------------------MDYIGL-- 42 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l-------G~~~~vf--NCs-~~------------------------------~d~~~m-- 42 (2567)
..||.|||||.++|.||+.| |.+|-.- .|. +- +|+..-
T Consensus 34 l~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~ 113 (334)
T PRK13407 34 VFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALT 113 (334)
T ss_pred EEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhh
Confidence 47999999999999999999 6533211 111 00 111100
Q ss_pred -HH--hhhhhhh-c-CccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCC
Q psy12680 43 -GK--FFKGLIA-T-GAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRS 117 (2567)
Q Consensus 43 -~r--if~Gl~q-~-GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRs 117 (2567)
|+ +-.|+.. + |.=.++||+||++.++++.+.+-+ ..+.-.+.-+|....+...+-+..|+||. ..
T Consensus 114 ~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~m-------ee~~v~v~r~G~~~~~p~rfiviAt~NP~---e~ 183 (334)
T PRK13407 114 RGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVA-------QSGENVVEREGLSIRHPARFVLVGSGNPE---EG 183 (334)
T ss_pred cCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHH-------HcCCeEEEECCeEEecCCCEEEEecCCcc---cC
Confidence 11 2245332 2 234899999999999999888754 34445577788888999999999999995 34
Q ss_pred CchhhHhhccc-cccccCC
Q psy12680 118 ELPDNLKSLFR-TVAMMVP 135 (2567)
Q Consensus 118 eLPdnLk~lFR-pvam~~P 135 (2567)
+||+.|-.-|- -|.+-.|
T Consensus 184 ~l~~aLldRF~~~v~v~~~ 202 (334)
T PRK13407 184 ELRPQLLDRFGLSVEVRSP 202 (334)
T ss_pred CCCHHHHhhcceEEEcCCC
Confidence 69999888874 3344333
No 88
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.98 E-value=0.0004 Score=80.79 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=38.3
Q ss_pred eeEEEeccCCCCcccccCCCChHHHHHHhhhccccc-cccchhhhhhhhhhhhhccCC-CCC
Q psy12680 932 RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWY-DRKDVVAVKLIEIQLMCAMGP-PST 991 (2567)
Q Consensus 932 ~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~y-d~~~~~~~~~~~~~~~~a~~p-~~~ 991 (2567)
+.|+|+|++|.=. ...+|.|||-++.|-.. .|.......=-+.++|+|||| |-|
T Consensus 107 ~GVLflDE~~ef~------~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG 162 (206)
T PF01078_consen 107 RGVLFLDELNEFD------RSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCG 162 (206)
T ss_dssp TSEEEECETTTS-------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----
T ss_pred CCEEEechhhhcC------HHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccccc
Confidence 4699999999874 45899999999998775 455555566668899999999 554
No 89
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.96 E-value=0.0042 Score=83.64 Aligned_cols=125 Identities=22% Similarity=0.303 Sum_probs=83.8
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEE----eCCCCccHHHH-----HH--hhhhhhh--cCccccccccccCCchhHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVF----NCSDSMDYIGL-----GK--FFKGLIA--TGAWACFDEFNRIDVEVLSVV 72 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vf----NCs~~~d~~~m-----~r--if~Gl~q--~GaW~CFDEfNri~~~vLSvv 72 (2567)
.|++|||||...|.+++...+..++- +|.. +....+ |. +-.|... .|.=+|.||||+++.++.+.+
T Consensus 242 ~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~-l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L 320 (509)
T smart00350 242 LGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVG-LTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAI 320 (509)
T ss_pred eCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCC-ccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHH
Confidence 59999999999999999998765442 3321 111111 11 1123111 244679999999999887776
Q ss_pred HHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCC----------CchhhHhhcccccccc--CCCHHH
Q psy12680 73 AQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRS----------ELPDNLKSLFRTVAMM--VPDYAL 139 (2567)
Q Consensus 73 aqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRs----------eLPdnLk~lFRpvam~--~PD~~l 139 (2567)
.+- +..+.-++.=.|....++..|.+..|+||-+ ||. .||+.|-+=|=-+..+ .||...
T Consensus 321 ~e~-------me~~~i~i~k~G~~~~l~~~~~viAa~NP~~-g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~ 391 (509)
T smart00350 321 HEA-------MEQQTISIAKAGITTTLNARCSVLAAANPIG-GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEER 391 (509)
T ss_pred HHH-------HhcCEEEEEeCCEEEEecCCcEEEEEeCCCC-cccCCCcChhhccCCChHHhCceeeEEEecCCCChHH
Confidence 653 3333223334688899999999999999976 433 8999999988554444 577653
No 90
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.88 E-value=0.0018 Score=87.26 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=32.1
Q ss_pred eeeeeeecCCCCCCCCCCcchhc---cccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1467 EIQLMCAMGPPSTGNTVTPRFSR---HFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1467 diq~v~am~Ppggg~~is~Rf~r---~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
++-+++|.|+|. .+.|.++| .-..+.++.|+.+.-..|+...+..
T Consensus 193 ~v~vI~aTn~~~---~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~ 240 (495)
T TIGR01241 193 GVIVIAATNRPD---VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN 240 (495)
T ss_pred CeEEEEecCChh---hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc
Confidence 366788888874 34555543 3346789999999999999876643
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.86 E-value=0.0034 Score=77.46 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=49.9
Q ss_pred eEEEeccCCCCccc---ccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCC--CCcCcccccccc-ee
Q psy12680 933 CVVFVDDVNMPLKE---EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFN-QI 1006 (2567)
Q Consensus 933 ~~~fiDD~nmp~~~---~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~--~~i~~r~~r~f~-~~ 1006 (2567)
.|+||||+..-..+ .+| ...++.|.+.++.+. .++.++.+..|.... ..++|.+.+.|. .+
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~-~~~i~~Ll~~~e~~~------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i 173 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFG-KEAIDTLVKGMEDNR------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISI 173 (261)
T ss_pred CEEEEechhhhccCCccchH-HHHHHHHHHHHhccC------------CCEEEEecCCcchhHHHHhcChHHHhccceEE
Confidence 39999999864432 123 223444445555421 123444444332221 357888999994 57
Q ss_pred eeccCCchhhHHHHHHHHhh
Q psy12680 1007 VINKFDDDTMVTIFSKILLW 1026 (2567)
Q Consensus 1007 ~~~~~~~~~l~~i~~~~l~~ 1026 (2567)
.++.++.+++..|+..++..
T Consensus 174 ~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 174 DFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EECCCCHHHHHHHHHHHHHH
Confidence 89999999999998887754
No 92
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0025 Score=84.37 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=85.2
Q ss_pred HHHHHhcCCC---cccccCCCCcccceeehhhhhhccccccccch---hhhhhhhhccccccceeeccccccCHHHHHHH
Q psy12680 1327 MKLLVTHQKP---VMFIGPTGTGKSCYITVSILFIKNNSRLRSGF---QHFLLKELSIEQWQPLIMNFSAQTSANQTQDI 1400 (2567)
Q Consensus 1327 l~~ll~~~~p---vll~GptGTGKT~~i~~~~~~~~~~~~l~~~~---~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ 1400 (2567)
+..++.+++. .||+||+|||||++++.....+.-.......+ -.....-..........+|-++.+.-..+..+
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i 105 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKI 105 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHH
Confidence 3444555432 69999999999998875322111000000000 00000000011123344444434444555544
Q ss_pred HHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC
Q psy12680 1401 IMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG 1480 (2567)
Q Consensus 1401 ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg 1480 (2567)
++. . .+.|..+++-|||+||+++=..+ ....|...++.-. ..+.++.+++.|.
T Consensus 106 ~~~-~------~~~p~~~~~kVvIIDE~h~Lt~~------a~~~LLk~LE~p~------------~~vv~Ilattn~~-- 158 (472)
T PRK14962 106 RDA-V------GYRPMEGKYKVYIIDEVHMLTKE------AFNALLKTLEEPP------------SHVVFVLATTNLE-- 158 (472)
T ss_pred HHH-H------hhChhcCCeEEEEEEChHHhHHH------HHHHHHHHHHhCC------------CcEEEEEEeCChH--
Confidence 322 1 24566778889999998764332 2233444444210 1244555554332
Q ss_pred CCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1481 NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1481 ~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+++.+.+.++.+..++.+.+..+...++.
T Consensus 159 -kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 159 -KVPPTIISRCQVIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred -hhhHHHhcCcEEEEECCccHHHHHHHHHHHHH
Confidence 57788888899999999999999888877664
No 93
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.81 E-value=0.0026 Score=88.95 Aligned_cols=132 Identities=14% Similarity=0.238 Sum_probs=80.6
Q ss_pred EEEEEEcCCCCccccccCCCChHHHHHHHhhcc---cccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccccceec
Q psy12680 1420 RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHW---MWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVI 1496 (2567)
Q Consensus 1420 ~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~---g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~vi~i 1496 (2567)
..|+|+|+++--..+.-| .|...|-+++|-+ .|-|.--..-..+.++.|+|+.|.- .++|.|+..+.++-+
T Consensus 417 ~~villDEidk~~~~~~g--~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~----~i~~aLl~R~~ii~~ 490 (784)
T PRK10787 417 NPLFLLDEIDKMSSDMRG--DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM----NIPAPLLDRMEVIRL 490 (784)
T ss_pred CCEEEEEChhhcccccCC--CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC----CCCHHHhcceeeeec
Confidence 457899999755544333 3667777777743 3333211112345678889877653 489999999999999
Q ss_pred cCCCHHHHHHHHHHHHHh-hhcccCCcc-cchhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhc
Q psy12680 1497 NKFDDDTMVTIFSKILLW-HLDTRGFSK-EFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLL 1572 (2567)
Q Consensus 1497 ~~p~~~sL~~If~~il~~-~l~~~gf~~-~v~~~~~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~ 1572 (2567)
..++.+.+..|....|.. .+...|... .+ ...+..+...++-| . =.++-|.|.|+++.+++
T Consensus 491 ~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l-~i~~~ai~~ii~~y-------------t-~e~GaR~LeR~I~~i~r 553 (784)
T PRK10787 491 SGYTEDEKLNIAKRHLLPKQIERNALKKGEL-TVDDSAIIGIIRYY-------------T-REAGVRSLEREISKLCR 553 (784)
T ss_pred CCCCHHHHHHHHHHhhhHHHHHHhCCCCCeE-EECHHHHHHHHHhC-------------C-cccCCcHHHHHHHHHHH
Confidence 999999999999877642 111112221 11 11122222222212 1 14889999999997553
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.79 E-value=0.0034 Score=79.76 Aligned_cols=140 Identities=13% Similarity=0.199 Sum_probs=84.7
Q ss_pred HHHHHhcCC---CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHh
Q psy12680 1327 MKLLVTHQK---PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMS 1403 (2567)
Q Consensus 1327 l~~ll~~~~---pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies 1403 (2567)
+..++..+. +++++||+|+|||.+++... +.+ ......+|++. .....+++.+..
T Consensus 33 l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~------------------~~~---~~~~~~i~~~~-~~~~~i~~~l~~ 90 (316)
T PHA02544 33 FKSIVKKGRIPNMLLHSPSPGTGKTTVAKALC------------------NEV---GAEVLFVNGSD-CRIDFVRNRLTR 90 (316)
T ss_pred HHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHH------------------HHh---CccceEeccCc-ccHHHHHHHHHH
Confidence 444454553 34558999999998875421 111 12345677776 334444443432
Q ss_pred hhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCC
Q psy12680 1404 KLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTV 1483 (2567)
Q Consensus 1404 ~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~i 1483 (2567)
-.... |..+..-||++||+..- ++-...+.|+.+++... .++.|+.+++.+ ..+
T Consensus 91 ~~~~~------~~~~~~~vliiDe~d~l-----~~~~~~~~L~~~le~~~------------~~~~~Ilt~n~~---~~l 144 (316)
T PHA02544 91 FASTV------SLTGGGKVIIIDEFDRL-----GLADAQRHLRSFMEAYS------------KNCSFIITANNK---NGI 144 (316)
T ss_pred HHHhh------cccCCCeEEEEECcccc-----cCHHHHHHHHHHHHhcC------------CCceEEEEcCCh---hhc
Confidence 22111 11234457889998542 23335677888877411 245677777754 256
Q ss_pred CcchhccccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1484 TPRFSRHFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1484 s~Rf~r~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.+.+.+.|.++.++.|+.+....|...++..
T Consensus 145 ~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 145 IEPLRSRCRVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred hHHHHhhceEEEeCCCCHHHHHHHHHHHHHH
Confidence 7888899999999999998888777665543
No 95
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.79 E-value=3.8 Score=61.88 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=17.7
Q ss_pred cccEEEEcCCCCChHHHHHHHH
Q psy12680 1805 RWGFMIVGLSFAGKTCAYRMLS 1826 (2567)
Q Consensus 1805 r~~~lLVG~~GSGK~sl~rlla 1826 (2567)
.|..+|+|++|||||++.-.+-
T Consensus 24 ~g~~~~~G~NGsGKS~~lda~~ 45 (1353)
T TIGR02680 24 DGRLLLRGNNGAGKSKVLELLL 45 (1353)
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4568889999999999777533
No 96
>KOG0727|consensus
Probab=96.74 E-value=0.0011 Score=76.25 Aligned_cols=141 Identities=21% Similarity=0.310 Sum_probs=77.9
Q ss_pred hcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCC
Q psy12680 1332 THQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1332 ~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~ 1411 (2567)
.--++||+.||+||||||++++.- |++ +-+|=----|+-+|+-+-..- +--+.
T Consensus 187 dpprgvllygppg~gktml~kava----~~t----------------------~a~firvvgsefvqkylgegp-rmvrd 239 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVA----NHT----------------------TAAFIRVVGSEFVQKYLGEGP-RMVRD 239 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHh----hcc----------------------chheeeeccHHHHHHHhccCc-HHHHH
Confidence 345789999999999999997521 100 001111122334444321100 00001
Q ss_pred ccCC-CCCcEEEEEEcCCCCccccccCCCC---------hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1412 VYGP-PLGKRCVVFVDDVNMPLKEEFGAQP---------PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1412 ~~gp-~~gK~~vvFiDDiNmP~~d~yGtQ~---------~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
+|.- ..+--.|+|||++.--+...|.+|. .+|||-|+ -|| |. -.++..+-|.|-..
T Consensus 240 vfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqm---dgf-dq-------~~nvkvimatnrad--- 305 (408)
T KOG0727|consen 240 VFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM---DGF-DQ-------TTNVKVIMATNRAD--- 305 (408)
T ss_pred HHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhc---cCc-Cc-------ccceEEEEecCccc---
Confidence 1111 1244579999999998888887764 35666665 233 32 12344555555432
Q ss_pred CCCcchh---ccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1482 TVTPRFS---RHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1482 ~is~Rf~---r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
++.|-++ |.=.-|-+|.|+...-.-+|++|..
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~tits 340 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITS 340 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhh
Confidence 3444333 3334466788999988889998764
No 97
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0014 Score=83.54 Aligned_cols=66 Identities=30% Similarity=0.398 Sum_probs=43.6
Q ss_pred CCccCCC---CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhccccc-ccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1410 KGVYGPP---LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWY-DRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1410 ~~~~gp~---~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~y-dr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
|+.+.|. +.-+=|+|+||+ |.-.. .++|-|||=+|.|-.- -|.......=-+.|+++||||.-.|+
T Consensus 271 G~~p~PGeIsLAH~GVLFLDEl--pef~~----~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~ 340 (490)
T COG0606 271 GGVPRPGEISLAHNGVLFLDEL--PEFKR----SILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGN 340 (490)
T ss_pred CCCCCCCceeeecCCEEEeecc--chhhH----HHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccC
Confidence 4555554 356679999994 43333 7899999999876543 12222233335789999999976653
No 98
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.70 E-value=0.008 Score=80.72 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=120.9
Q ss_pred ceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc
Q psy12680 1312 QIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ 1391 (2567)
Q Consensus 1312 ~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~ 1391 (2567)
+++..+....+....+..+...+.|+++.|++|||||.+.+.... ..+...--.+.+||++-
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~------------------~s~~~~~~~i~i~c~~~ 200 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR------------------HSPRAKAPFIALNMAAI 200 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHh------------------cCCCCCCCeEeeeCCCC
Confidence 455566666677777788888999999999999999977654221 11223345678999876
Q ss_pred cCHHHHHHHHHhhhhcccCCccCCC---------CCcEEEEEEcCC-CCccccccCCCChHHHHHHHhhcccccccCcce
Q psy12680 1392 TSANQTQDIIMSKLDKRRKGVYGPP---------LGKRCVVFVDDV-NMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVV 1461 (2567)
Q Consensus 1392 Tts~~~q~~ies~lekr~~~~~gp~---------~gK~~vvFiDDi-NmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~ 1461 (2567)
+ ++.+++.+..+.++.|... ....-.+|+|++ +||.. ...-|.++++.+.+.......
T Consensus 201 ~-----~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~-------~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 201 P-----KDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD-------VQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred C-----HHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH-------HHHHHHHHHhcCcEEeCCCCC
Confidence 3 2445555554444433211 011125788888 45532 334566667766555422222
Q ss_pred eeeeeeeeeeeecCCCCC----CCCCCcchhccccceeccCCCH----HHHHHHHHHHHHhhhcccCCcccchhHHHHHH
Q psy12680 1462 AVKLIEIQLMCAMGPPST----GNTVTPRFSRHFNQIVINKFDD----DTMVTIFSKILLWHLDTRGFSKEFDPCIEQLV 1533 (2567)
Q Consensus 1462 ~~~i~diq~v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p~~----~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv 1533 (2567)
.+ -.|+.++++.+.+-. .+...+.|..+|+.+.+.-|+- +.+..+...++..+-.. +...+..+.+...
T Consensus 269 ~~-~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~--~~~~~~~~~~~a~ 345 (469)
T PRK10923 269 PV-KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARE--LGVEAKLLHPETE 345 (469)
T ss_pred eE-EeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHH--cCCCCCCcCHHHH
Confidence 22 258899999876532 2345677888887777665542 33444444444332111 1111111111111
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhc
Q psy12680 1534 QATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLL 1572 (2567)
Q Consensus 1534 ~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~ 1572 (2567)
... ...||--|.|+|.++++-+..
T Consensus 346 ~~L---------------~~~~wpgNv~eL~~~i~~~~~ 369 (469)
T PRK10923 346 AAL---------------TRLAWPGNVRQLENTCRWLTV 369 (469)
T ss_pred HHH---------------HhCCCCChHHHHHHHHHHHHH
Confidence 110 234667899999999987654
No 99
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.69 E-value=7.4 Score=56.91 Aligned_cols=490 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHHHHHHhhhccCCceEEEEEecccccccccccccccccccccccchhHHHHHHHhhh-
Q psy12680 1806 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMS- 1884 (2567)
Q Consensus 1806 ~~~lLVG~~GSGK~sl~rlla~~l~~~~~~~~~~~~~v~~~~inpk~is~~~~Yg~~~~~~~eW~dGil~~~~r~~~~~- 1884 (2567)
|=.+++|++||||||+.-.+.+++ ||...... .......++.-...
T Consensus 26 gi~lI~G~nGsGKSSIldAI~~AL-----------------------------yG~~~~~~----~~~~~~~i~~g~~~~ 72 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAITFAL-----------------------------YGKTPRLG----AFSLDDLIRAGEKSA 72 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH-----------------------------cCCCCCcc----chhhhHHHhcCCccE
Q ss_pred ------cccCCeEEeecC-----------------CcchHHHhhhhhhHHHHHHHHhhhccccccCCceEEEeccccccc
Q psy12680 1885 ------QNENRKWLIFDG-----------------PVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEV 1941 (2567)
Q Consensus 1885 ------~~~~~~~iv~Dg-----------------~~d~~wie~ln~~ldD~k~l~l~~Ge~i~~~~~~~life~q~L~~ 1941 (2567)
...+..|.+.=- +-+..+...- +.++.+-...|
T Consensus 73 ~V~l~F~~~g~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~----~v~~~i~~llg-------------------- 128 (908)
T COG0419 73 SVELEFEVNGKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKK----DVNEKIEELLG-------------------- 128 (908)
T ss_pred EEEEEEEECCEEEEEEeeeccccCCCccchhhcccCcchhhhhhh----hHHHHHHHHhC--------------------
Q ss_pred cCCccccchhhHhhhhhccCCCccCCCCChh--HHHHHHHhhchhhhhhhccCCCcccHHHHhHhhhCCCCcHHHHHHHH
Q psy12680 1942 ASPATITDESMVEDLSNLLNSGEVPNIFASD--EKAEICEKMGVIDRQKDKSMQTDGTMMALFKFFVDTPWPPDALLAVA 2019 (2567)
Q Consensus 1942 aS~a~I~~e~fLE~iN~lL~sGevP~Lf~~d--E~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~fv~~~Wp~eAL~~VA 2019 (2567)
+....|.-.| ++..|++-.++... |+..|+..+
T Consensus 129 -----ld~~~f~~~v--~l~QGe~~~fl~~~~~er~~il~~l-------------------------------------- 163 (908)
T COG0419 129 -----LDKDTFTRSV--YLPQGEFDAFLKSKPKERKEILDEL-------------------------------------- 163 (908)
T ss_pred -----CCHHHHhHHh--eeccHhHHHHHhcCcHHHHHHHHHH--------------------------------------
Q ss_pred HHhcccCCCCHHHHHHHHhhhhhhhhhhhhhhHHHHHHcCCccccCchhHHHHHHHHHHHHHHH--HHHHHHHHHH--HH
Q psy12680 2020 TRFLNEVELSEAERQISIDMCQNFHVSTQNLSDEFLVKTSRHVYVTPTSYLELISTFKQLLKVK--QEEVLNGKNR--YT 2095 (2567)
Q Consensus 2020 ~~~L~~~~~~~~~~~~~~~~~~~~H~sv~~~s~~~~~~~~r~~yvTP~syL~~l~~f~~ll~~k--~~el~~~~~r--l~ 2095 (2567)
+...........+...+..+....+.+..... .++..+-+.+.....-+... ..++..++.+ +.
T Consensus 164 --------~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~----~~~e~~~~~~~~~~~e~~~~~~l~e~~~~~~~~~l~ 231 (908)
T COG0419 164 --------FGLEKYEKLSELLKEVIKEAKAKIEELEGQLS----ELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELE 231 (908)
T ss_pred --------hCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHhhHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhchHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy12680 2096 VGLEKLDKAASQIAVMREEIEYLQPFLMV--------------SAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQA 2161 (2567)
Q Consensus 2096 ~GL~KL~ea~~~V~~l~~~L~~~qp~L~~--------------~~~~~~~~~~~le~~~~~a~~~~~~v~~~~~~~~e~~ 2161 (2567)
.-++.+.+....+....+.+..++..+.. .-.+.+....+++.....-......+.+.+.......
T Consensus 232 ~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~ 311 (908)
T COG0419 232 QEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCC-hHHHHHH
Q psy12680 2162 LAAQAMKSVAEGVKKDEEVANEQALAA---QAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSP-PDIVKLV 2237 (2567)
Q Consensus 2162 ~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~P-P~~V~~V 2237 (2567)
......+...+..+..++.+.+..... .....+......+..+.+++-...++.. +.++.+...+ =......
T Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~----~~~l~~~~~~~le~~~~~ 387 (908)
T COG0419 312 ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER----LEELEKELEKALERLKQL 387 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHhcCCCCCcCCCCCCcccCCcHHHHhhhcchhhHhhhhccCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHhH-
Q psy12680 2238 MKAVCILKGVKSERVPDAGGQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSST- 2316 (2567)
Q Consensus 2238 meaVciLlg~~~~~~~~~~~~~~~~~W~~ak~~L~~~~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~- 2316 (2567)
..+.-.+....... +.....+...-.-... .-+.+...-..+...-.+-.......-.
T Consensus 388 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~e~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (908)
T COG0419 388 EEAIQELKEELAEL------------SAALEEIQEELEELEK---------ELEELERELEELEEEIKKLEEQINQLESK 446 (908)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------hhhHHHH-------HHHHHHHHH--------HHH---------HHhcchHHHHHHHHHHHHHHHHHHHH
Q psy12680 2317 -----------AAEGLCK-------WVIAICKYD--------KVA---------KIVGPKKEALRQAEEKLQLAMSALHE 2361 (2567)
Q Consensus 2317 -----------Aa~~Lc~-------WV~A~~~Y~--------~V~---------~~V~Pk~~~l~~ae~~l~~a~~~L~~ 2361 (2567)
+++|+|. +-.....|. ++. .++.=+...+..+++.+....+....
T Consensus 447 ~~~~~~l~~~~~~CPvCg~~l~~~~~~~~~~~~~~el~~l~~~i~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~ 526 (908)
T COG0419 447 ELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEA 526 (908)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhh------ccHHHHHHHHHHHhhcch
Q psy12680 2362 KQEQNRIVQEKLQKLQNTLDAKKKE--LKDLQDELDLCVKKKQRAEDLIGKLGGEK------ERWSSTAKMLNEKYYQLT 2433 (2567)
Q Consensus 2362 ~~~~l~~l~~~l~~L~~~~~~~~~e--k~~L~~~~~~~~~rl~rA~~Li~~L~~Ek------~RW~~~~~~l~~~~~~l~ 2433 (2567)
..+.+..-.+++.....+++....+ .+.++.+++.++.++.....+...+.... ..|.+....++.....+-
T Consensus 527 ~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~l~ 606 (908)
T COG0419 527 LKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELE 606 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q psy12680 2434 G 2434 (2567)
Q Consensus 2434 G 2434 (2567)
+
T Consensus 607 ~ 607 (908)
T COG0419 607 E 607 (908)
T ss_pred H
No 100
>KOG0652|consensus
Probab=96.69 E-value=0.0013 Score=76.14 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCCcccccc-----CCC----ChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchh-
Q psy12680 1419 KRCVVFVDDVNMPLKEEF-----GAQ----PPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFS- 1488 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~d~y-----GtQ----~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~- 1488 (2567)
.-+|+|||++.--..-.| |.. ..+|||-|+= ||- +-.++.+++|.|--. -+.|-++
T Consensus 264 aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD---GFs--------s~~~vKviAATNRvD---iLDPALlR 329 (424)
T KOG0652|consen 264 APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD---GFS--------SDDRVKVIAATNRVD---ILDPALLR 329 (424)
T ss_pred CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc---CCC--------CccceEEEeeccccc---ccCHHHhh
Confidence 358999999876544333 322 2468888873 332 234566777776321 2344333
Q ss_pred --ccccceeccCCCHHHHHHHHH
Q psy12680 1489 --RHFNQIVINKFDDDTMVTIFS 1509 (2567)
Q Consensus 1489 --r~f~vi~i~~p~~~sL~~If~ 1509 (2567)
|.=+-|-+|.|+.++-.+|.+
T Consensus 330 SGRLDRKIEfP~Pne~aRarIlQ 352 (424)
T KOG0652|consen 330 SGRLDRKIEFPHPNEEARARILQ 352 (424)
T ss_pred cccccccccCCCCChHHHHHHHH
Confidence 334457789999998888875
No 101
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.68 E-value=0.0019 Score=84.03 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=50.6
Q ss_pred cEEEEEEcCCCCcccccc-----CCCChHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhc--c
Q psy12680 1419 KRCVVFVDDVNMPLKEEF-----GAQPPIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSR--H 1490 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~d~y-----GtQ~~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r--~ 1490 (2567)
..+|+|+||+.--..... |.......+.+++.. .|+-+. .++.++||.|.+. .+++.++| .
T Consensus 224 ~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--------~~v~VI~aTn~~~---~ld~allRpgR 292 (389)
T PRK03992 224 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--------GNVKIIAATNRID---ILDPAILRPGR 292 (389)
T ss_pred CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--------CCEEEEEecCChh---hCCHHHcCCcc
Confidence 347999999875322211 122233445555532 222211 2567888888763 35565554 3
Q ss_pred c-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1491 F-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1491 f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
| ..+.++.|+.+.-..|+...+.
T Consensus 293 fd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 293 FDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CceEEEECCCCHHHHHHHHHHHhc
Confidence 3 4688999999999999986553
No 102
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.64 E-value=0.0062 Score=85.32 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=88.0
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHH------------HHhhhhhhhcCcc---ccccccccCCchhH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGL------------GKFFKGLIATGAW---ACFDEFNRIDVEVL 69 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m------------~rif~Gl~q~GaW---~CFDEfNri~~~vL 69 (2567)
..||+|+|||++++.+|+++|++++.++|+.-.|...+ |+++.++..+|++ .++||++++....-
T Consensus 354 l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~ 433 (784)
T PRK10787 354 LVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR 433 (784)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccC
Confidence 47999999999999999999999999999987765443 6777778887764 78999999987531
Q ss_pred HHHHHHHHhhhhhhhcCCceEEEcCe--EEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHH
Q psy12680 70 SVVAQQILTIQRGVTLGEEEILFEGT--ILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEII 144 (2567)
Q Consensus 70 Svvaqqi~~Iq~a~~~~~~~~~f~g~--~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~ 144 (2567)
.-. ...+...+. ......|.+. +++.+-+--+||.-.|.. +||+-|..=|..|....+.-.-+.+|.
T Consensus 434 g~~---~~aLlevld-~~~~~~~~d~~~~~~~dls~v~~i~TaN~~----~i~~aLl~R~~ii~~~~~t~eek~~Ia 502 (784)
T PRK10787 434 GDP---ASALLEVLD-PEQNVAFSDHYLEVDYDLSDVMFVATSNSM----NIPAPLLDRMEVIRLSGYTEDEKLNIA 502 (784)
T ss_pred CCH---HHHHHHHhc-cccEEEEecccccccccCCceEEEEcCCCC----CCCHHHhcceeeeecCCCCHHHHHHHH
Confidence 100 111112221 1223445443 344444444555433322 599999998887777777766666664
No 103
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.64 E-value=0.0018 Score=85.74 Aligned_cols=137 Identities=15% Similarity=0.296 Sum_probs=75.2
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccc----cc--cCHHHHHHHHHhhhhc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFS----AQ--TSANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfS----a~--Tts~~~q~~ies~lek 1407 (2567)
.+++||+||+|||||.++++.- +++. .-.+.++++ .. .+...+.+++.. .+
T Consensus 259 pkGILL~GPpGTGKTllAkaiA------------------~e~~---~~~~~l~~~~l~~~~vGese~~l~~~f~~-A~- 315 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIA------------------NDWQ---LPLLRLDVGKLFGGIVGESESRMRQMIRI-AE- 315 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHH------------------HHhC---CCEEEEEhHHhcccccChHHHHHHHHHHH-HH-
Confidence 4679999999999999887521 1111 112223222 11 122333333321 11
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCcc--ccccCC-CChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCC
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPL--KEEFGA-QPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVT 1484 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~--~d~yGt-Q~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is 1484 (2567)
....||+|+||+.--. ....|. .....++.++++ |.+.++ ..+-++||.|.|. .++
T Consensus 316 ---------~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~---~l~~~~------~~V~vIaTTN~~~---~Ld 374 (489)
T CHL00195 316 ---------ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFIT---WLSEKK------SPVFVVATANNID---LLP 374 (489)
T ss_pred ---------hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHH---HHhcCC------CceEEEEecCChh---hCC
Confidence 1235999999987322 122221 122333444433 222111 2466788888764 356
Q ss_pred cchhc--cc-cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1485 PRFSR--HF-NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1485 ~Rf~r--~f-~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
|-++| .| .+++++.|+.+.-..||...+..
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 65554 34 35779999999999999877644
No 104
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0011 Score=84.57 Aligned_cols=64 Identities=27% Similarity=0.317 Sum_probs=44.1
Q ss_pred cccCCCC---CceeEEEeccCCCCcccccCCCChHHHHHHhhhccccc-cccchhhhhhhhhhhhhccCCCCCC
Q psy12680 923 GVYGPPL---GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWY-DRKDVVAVKLIEIQLMCAMGPPSTG 992 (2567)
Q Consensus 923 ~~~gp~~---~k~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~y-d~~~~~~~~~~~~~~~~a~~p~~~~ 992 (2567)
++|.|.. --..|+|+||+- .-.. ..+|-|||-|++|-.- .|.......=-+.|+|+||||.-.|
T Consensus 272 ~~p~PGeIsLAH~GVLFLDElp--ef~~----~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG 339 (490)
T COG0606 272 GVPRPGEISLAHNGVLFLDELP--EFKR----SILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCG 339 (490)
T ss_pred CCCCCCceeeecCCEEEeeccc--hhhH----HHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCcc
Confidence 4555542 234799999974 3333 7899999999998664 3433334444568999999996655
No 105
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.60 E-value=1.5 Score=65.57 Aligned_cols=17 Identities=35% Similarity=0.728 Sum_probs=13.9
Q ss_pred ccccCCCCcccceeehh
Q psy12680 1338 MFIGPTGTGKSCYITVS 1354 (2567)
Q Consensus 1338 ll~GptGTGKT~~i~~~ 1354 (2567)
.++||.|||||-++-+.
T Consensus 28 ~IvGPNGSGKSNI~DAi 44 (1163)
T COG1196 28 AIVGPNGSGKSNIVDAI 44 (1163)
T ss_pred EEECCCCCchHHHHHHH
Confidence 57999999999877543
No 106
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.60 E-value=0.0033 Score=75.76 Aligned_cols=133 Identities=12% Similarity=0.145 Sum_probs=68.7
Q ss_pred hcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCC
Q psy12680 1332 THQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1332 ~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~ 1411 (2567)
..+.+++++||+|||||.+++..... ........+.++++..+. ...+.++ .+
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~------------------~~~~~~~~~~i~~~~~~~--~~~~~~~-~~------ 88 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAA------------------AEERGKSAIYLPLAELAQ--ADPEVLE-GL------ 88 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH------------------HHhcCCcEEEEeHHHHHH--hHHHHHh-hc------
Confidence 45678999999999999888643211 111122334455544331 1112221 11
Q ss_pred ccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCC-cchhcc
Q psy12680 1412 VYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVT-PRFSRH 1490 (2567)
Q Consensus 1412 ~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is-~Rf~r~ 1490 (2567)
.+.-++++||+.+=..+.. ..+.|..+++.. ++.. ..++.+++.+....... +++.+.
T Consensus 89 ------~~~~lLvIDdi~~l~~~~~----~~~~L~~~l~~~--~~~~---------~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 89 ------EQADLVCLDDVEAIAGQPE----WQEALFHLYNRV--REAG---------GRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ------ccCCEEEEeChhhhcCChH----HHHHHHHHHHHH--HHcC---------CeEEEECCCChHHCCcccHHHHHH
Confidence 1123788999985322111 134455554421 1111 12444554332222222 566655
Q ss_pred c---cceeccCCCHHHHHHHHHHHH
Q psy12680 1491 F---NQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1491 f---~vi~i~~p~~~sL~~If~~il 1512 (2567)
+ .++.++.|+.+.+..+...++
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHH
Confidence 5 367899999998888876654
No 107
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.58 E-value=0.017 Score=79.01 Aligned_cols=132 Identities=23% Similarity=0.216 Sum_probs=84.6
Q ss_pred CCCCCCCCchhHHHHHHHHhcC--eEEEEeCCCCccHHHHHH-------------hhhhhhh-c-CccccccccccCCch
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAK--LCIVFNCSDSMDYIGLGK-------------FFKGLIA-T-GAWACFDEFNRIDVE 67 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~--~~~vfNCs~~~d~~~m~r-------------if~Gl~q-~-GaW~CFDEfNri~~~ 67 (2567)
..|++|||||..++.|++.+++ +.+-++|+-.-| ...|- +-.|+.. + |.=.|+||+||++.+
T Consensus 21 l~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d-~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~ 99 (589)
T TIGR02031 21 IRARAGTGKTALARALAEILPPIMPFVELPLGVTED-RLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDG 99 (589)
T ss_pred EEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchh-hcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCCHH
Confidence 4699999999999999999876 355566521111 11111 1122211 2 335699999999999
Q ss_pred hHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcccc--ccccCCCHHHHHHHHH
Q psy12680 68 VLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRT--VAMMVPDYALISEIIV 145 (2567)
Q Consensus 68 vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRp--vam~~PD~~lIaEi~L 145 (2567)
+.+.+.+-+ ..+.-++.=+|....+...+.+..|+||.- +.-+||+.|-.-|=- ..-..|+...=.||+.
T Consensus 100 ~q~~Ll~al-------~~g~v~i~r~G~~~~~p~~f~lIAt~np~e-~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~ 171 (589)
T TIGR02031 100 LSNRLLQAL-------DEGVVIVEREGISVVHPAKFALIATYDPAE-GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVR 171 (589)
T ss_pred HHHHHHHHH-------HcCCeEEEECCCceeecCceEEEEecCCcc-ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHH
Confidence 998887744 334334444588888888999999999973 222799887665533 1222355554445554
No 108
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.58 E-value=0.42 Score=71.22 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=56.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy12680 2339 GPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDL-QDELDLCVKKKQRAEDLIGKLGGEKER 2417 (2567)
Q Consensus 2339 ~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L-~~~~~~~~~rl~rA~~Li~~L~~Ek~R 2417 (2567)
+-..+.+.+.+.+++.++..+...+.++...+.+++.++.+.+....+.++. +...+..+.++.++..-+..|..|...
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666666666666666666666666666655555443 334567777888888888888888888
Q ss_pred HHHHHHH
Q psy12680 2418 WSSTAKM 2424 (2567)
Q Consensus 2418 W~~~~~~ 2424 (2567)
|....+.
T Consensus 704 ~~~~~~~ 710 (1201)
T PF12128_consen 704 LLEELKE 710 (1201)
T ss_pred HHHHHHH
Confidence 8876643
No 109
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.57 E-value=0.0035 Score=76.07 Aligned_cols=140 Identities=12% Similarity=0.202 Sum_probs=77.1
Q ss_pred HHHHHHHHh--cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHH
Q psy12680 1324 IALMKLLVT--HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDII 1401 (2567)
Q Consensus 1324 ~~ll~~ll~--~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~i 1401 (2567)
...+..+.. .+.+++++||+|||||.++.+.... +......+..++++..++. ..+.+
T Consensus 33 ~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~------------------~~~~~~~v~y~~~~~~~~~--~~~~~ 92 (235)
T PRK08084 33 LAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAE------------------LSQRGRAVGYVPLDKRAWF--VPEVL 92 (235)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH------------------HHhCCCeEEEEEHHHHhhh--hHHHH
Confidence 344444433 3468999999999999877542211 1111223344455442211 11111
Q ss_pred HhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeee-eeecCCCCCC
Q psy12680 1402 MSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQL-MCAMGPPSTG 1480 (2567)
Q Consensus 1402 es~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~-v~am~Ppggg 1480 (2567)
+ .++ +.-++++||+..-..+.-..+....++..+.+.|. .++ +++-+||..-
T Consensus 93 ~-~~~------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~--------------~~li~ts~~~p~~l 145 (235)
T PRK08084 93 E-GME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGR--------------TRLLITGDRPPRQL 145 (235)
T ss_pred H-Hhh------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCC--------------CeEEEeCCCChHHc
Confidence 1 111 11378899998654332111122233444433221 123 4445666554
Q ss_pred CCCCcchhccc---cceeccCCCHHHHHHHHHH
Q psy12680 1481 NTVTPRFSRHF---NQIVINKFDDDTMVTIFSK 1510 (2567)
Q Consensus 1481 ~~is~Rf~r~f---~vi~i~~p~~~sL~~If~~ 1510 (2567)
+.+.|++.+.+ .++.+..|+++.+..|...
T Consensus 146 ~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 146 NLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 66789999999 7899999999999998765
No 110
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.56 E-value=0.0018 Score=85.73 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=56.2
Q ss_pred eeEEEeccCCCCcccccCCCChHHHHHHhhhccccc-cccchhhhhhhhhhhhhccCCCCCC-C----------------
Q psy12680 932 RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWY-DRKDVVAVKLIEIQLMCAMGPPSTG-N---------------- 993 (2567)
Q Consensus 932 ~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~y-d~~~~~~~~~~~~~~~~a~~p~~~~-~---------------- 993 (2567)
..++|+||++--. ...++.|||.|+.|.++ +|.......-.+.++||||||...| .
T Consensus 295 gGvLfLDEi~e~~------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~ 368 (506)
T PRK09862 295 NGVLFLDELPEFE------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYL 368 (506)
T ss_pred CCEEecCCchhCC------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHH
Confidence 3599999997532 26789999999999998 5655555566789999999996433 1
Q ss_pred -CcCcccccccce-eeeccCCch
Q psy12680 994 -TVTPRFSRHFNQ-IVINKFDDD 1014 (2567)
Q Consensus 994 -~i~~r~~r~f~~-~~~~~~~~~ 1014 (2567)
.++..++..|.+ +.+++++.+
T Consensus 369 ~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 369 NRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred hhCCHhHHhhccEEEEeCCCCHH
Confidence 366667777777 346666654
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.53 E-value=0.0052 Score=80.09 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=77.8
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhh-hcCccccccccccC-----------Cc
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLI-ATGAWACFDEFNRI-----------DV 66 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~-q~GaW~CFDEfNri-----------~~ 66 (2567)
..||+|||||.++|.+|+.+|.+++.++|++-+. .+.+..+|.-.. ...+-.+|||+..| +.
T Consensus 170 L~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~ 249 (389)
T PRK03992 170 LYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDR 249 (389)
T ss_pred EECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccH
Confidence 4799999999999999999999999999997542 233344443222 23567899999988 34
Q ss_pred hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHHH
Q psy12680 67 EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISEI 143 (2567)
Q Consensus 67 ~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaEi 143 (2567)
++...+.+.+..+.. .. + ..+..|..|-|.- ..|++.|.. +-|-|.+-.||..-..+|
T Consensus 250 ~~~~~l~~lL~~ld~-~~---------~-----~~~v~VI~aTn~~----~~ld~allRpgRfd~~I~v~~P~~~~R~~I 310 (389)
T PRK03992 250 EVQRTLMQLLAEMDG-FD---------P-----RGNVKIIAATNRI----DILDPAILRPGRFDRIIEVPLPDEEGRLEI 310 (389)
T ss_pred HHHHHHHHHHHhccc-cC---------C-----CCCEEEEEecCCh----hhCCHHHcCCccCceEEEECCCCHHHHHHH
Confidence 444445544432211 00 0 1133455566631 246666542 335688889999888887
Q ss_pred H
Q psy12680 144 I 144 (2567)
Q Consensus 144 ~ 144 (2567)
+
T Consensus 311 l 311 (389)
T PRK03992 311 L 311 (389)
T ss_pred H
Confidence 4
No 112
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.023 Score=74.45 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=87.6
Q ss_pred HHHHHhcCC-C--cccccCCCCcccceeehhhhhhccccccccc-h------hhhhhhhhccccccceeeccccccCHHH
Q psy12680 1327 MKLLVTHQK-P--VMFIGPTGTGKSCYITVSILFIKNNSRLRSG-F------QHFLLKELSIEQWQPLIMNFSAQTSANQ 1396 (2567)
Q Consensus 1327 l~~ll~~~~-p--vll~GptGTGKT~~i~~~~~~~~~~~~l~~~-~------~~~ll~~l~~~~~~~~~lnfSa~Tts~~ 1396 (2567)
+..++.+++ | .||+||+|||||++++.....+. ....... . -..+.... ...++.++-++......
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~---~~dviEIdaas~~gVd~ 105 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-CENPIGNEPCNECTSCLEITKGI---SSDVLEIDAASNRGIEN 105 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-cccccCccccCCCcHHHHHHccC---CccceeechhhcccHHH
Confidence 444455544 3 69999999999998875322211 1000000 0 00000000 01122333333344445
Q ss_pred HHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCC
Q psy12680 1397 TQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGP 1476 (2567)
Q Consensus 1397 ~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~P 1476 (2567)
+.++++. + .|.|..|++-|++||+++|=..+ ...+||+-+-+. -..+.|+.|++-
T Consensus 106 IReL~e~-l------~~~p~~g~~KV~IIDEah~Ls~~-----A~NALLKtLEEP-------------p~~viFILaTte 160 (484)
T PRK14956 106 IRELRDN-V------KFAPMGGKYKVYIIDEVHMLTDQ-----SFNALLKTLEEP-------------PAHIVFILATTE 160 (484)
T ss_pred HHHHHHH-H------HhhhhcCCCEEEEEechhhcCHH-----HHHHHHHHhhcC-------------CCceEEEeecCC
Confidence 5554433 1 35677788889999999986554 234455555221 124566666654
Q ss_pred CCCCCCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1477 PSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1477 pggg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+ ..+.+.+.+.+.++.+..++.+.+......++.
T Consensus 161 ~---~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 161 F---HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred h---hhccHHHHhhhheeeecCCCHHHHHHHHHHHHH
Confidence 3 357788888888889999999888877776654
No 113
>KOG0161|consensus
Probab=96.51 E-value=4.1 Score=61.62 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHH
Q psy12680 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSS 2420 (2567)
Q Consensus 2341 k~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~ 2420 (2567)
++..++.+.....+..+++...+.+++.+++.++.|+..++.+.+.+..++.+..+...++.....=-+.|.++|.+=..
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~ 1723 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEA 1723 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Confidence 45566666667777777777777888888888888888888888888888888888777777766666788999999988
Q ss_pred HHHHHHHHhhcchhHHH
Q psy12680 2421 TAKMLNEKYYQLTGDVL 2437 (2567)
Q Consensus 2421 ~~~~l~~~~~~l~GD~l 2437 (2567)
.+..+++.+.....++=
T Consensus 1724 ~i~~l~~elee~~~~~~ 1740 (1930)
T KOG0161|consen 1724 EIAQLQSELEEEQSELR 1740 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888887766653
No 114
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.48 E-value=0.0014 Score=71.45 Aligned_cols=116 Identities=20% Similarity=0.322 Sum_probs=62.2
Q ss_pred cccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc--CHHHHHHHHHhhhhcccCCccC
Q psy12680 1337 VMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT--SANQTQDIIMSKLDKRRKGVYG 1414 (2567)
Q Consensus 1337 vll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T--ts~~~q~~ies~lekr~~~~~g 1414 (2567)
+++.||+|||||++++... +.+ .+.++.++.+.-. ........+...+++-+...
T Consensus 1 ill~G~~G~GKT~l~~~la------------------~~l---~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA------------------QYL---GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA-- 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH------------------HHT---TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS--
T ss_pred CEEECcCCCCeeHHHHHHH------------------hhc---ccccccccccccccccccccccccccccccccccc--
Confidence 5899999999999886422 222 1223444444443 22334444444444321111
Q ss_pred CCCCcEEEEEEcCCCCcccccc--CCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchh
Q psy12680 1415 PPLGKRCVVFVDDVNMPLKEEF--GAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFS 1488 (2567)
Q Consensus 1415 p~~gK~~vvFiDDiNmP~~d~y--GtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~ 1488 (2567)
+.+|+|+||+..-..+.- ..-....++++++..-..+... -..+.+++++|.+. .+.+.+.
T Consensus 58 ----~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~------~~~~~vI~ttn~~~---~i~~~l~ 120 (132)
T PF00004_consen 58 ----KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK------NSRVIVIATTNSPD---KIDPALL 120 (132)
T ss_dssp ----TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT------SSSEEEEEEESSGG---GSCHHHH
T ss_pred ----cceeeeeccchhcccccccccccccccccceeeecccccccc------cccceeEEeeCChh---hCCHhHH
Confidence 569999999988776651 1122334555555532222221 12367788887632 3555555
No 115
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.47 E-value=0.0031 Score=83.43 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=56.5
Q ss_pred CcEEEEEEcCCCCccccccCCCChHHHHHHHhhccccc-ccCcceeeeeeeeeeeeecCCCCCCC---------------
Q psy12680 1418 GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWY-DRKDVVAVKLIEIQLMCAMGPPSTGN--------------- 1481 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~y-dr~~~~~~~i~diq~v~am~Ppggg~--------------- 1481 (2567)
...-++|+||++-- ....++.|||.++.|.++ .|.......-.+++++|||||...|.
T Consensus 293 A~gGvLfLDEi~e~------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~ 366 (506)
T PRK09862 293 AHNGVLFLDELPEF------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLR 366 (506)
T ss_pred ccCCEEecCCchhC------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHH
Confidence 34569999998742 236789999999999997 55555555567999999999965441
Q ss_pred ---CCCcchhccccc-eeccCCCHH
Q psy12680 1482 ---TVTPRFSRHFNQ-IVINKFDDD 1502 (2567)
Q Consensus 1482 ---~is~Rf~r~f~v-i~i~~p~~~ 1502 (2567)
.++.-++..|-+ +.+++|+.+
T Consensus 367 Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 367 YLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHhhCCHhHHhhccEEEEeCCCCHH
Confidence 244456666666 456777665
No 116
>KOG0734|consensus
Probab=96.47 E-value=0.0013 Score=83.01 Aligned_cols=145 Identities=19% Similarity=0.301 Sum_probs=81.5
Q ss_pred CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCccC
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYG 1414 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~~g 1414 (2567)
++|||+||||||||++.++.-. +. .+-.+..| ...+-.+.-+-=-||-+..|.
T Consensus 338 KGVLLvGPPGTGKTlLARAvAG------------------EA-----~VPFF~~s----GSEFdEm~VGvGArRVRdLF~ 390 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLARAVAG------------------EA-----GVPFFYAS----GSEFDEMFVGVGARRVRDLFA 390 (752)
T ss_pred CceEEeCCCCCchhHHHHHhhc------------------cc-----CCCeEecc----ccchhhhhhcccHHHHHHHHH
Confidence 6899999999999998875311 00 01111111 122333333333344444454
Q ss_pred CCCC-cEEEEEEcCCCCccccccCC---CChHHH----HHH-HhhcccccccCcceeeeeeeeeeeeecCCCCCC-CCC-
Q psy12680 1415 PPLG-KRCVVFVDDVNMPLKEEFGA---QPPIEI----LRQ-WLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG-NTV- 1483 (2567)
Q Consensus 1415 p~~g-K~~vvFiDDiNmP~~d~yGt---Q~~iel----LRQ-lid~~g~ydr~~~~~~~i~diq~v~am~Ppggg-~~i- 1483 (2567)
.+-. --||||||+|.- -|+ +..+.- |-| |.|.-||-. -+.|-+++|-|-|-.= +.+
T Consensus 391 aAk~~APcIIFIDEiDa-----vG~kR~~~~~~y~kqTlNQLLvEmDGF~q--------NeGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 391 AAKARAPCIIFIDEIDA-----VGGKRNPSDQHYAKQTLNQLLVEMDGFKQ--------NEGIIVIGATNFPEALDKALT 457 (752)
T ss_pred HHHhcCCeEEEEechhh-----hcccCCccHHHHHHHHHHHHHHHhcCcCc--------CCceEEEeccCChhhhhHHhc
Confidence 4432 359999999753 331 222222 223 456667643 3467889999977653 222
Q ss_pred -CcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccch
Q psy12680 1484 -TPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFD 1526 (2567)
Q Consensus 1484 -s~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~ 1526 (2567)
+-||=||. .+|.|+-.-=..|+..++...+ +.++|+
T Consensus 458 RPGRFD~~v---~Vp~PDv~GR~eIL~~yl~ki~----~~~~VD 494 (752)
T KOG0734|consen 458 RPGRFDRHV---TVPLPDVRGRTEILKLYLSKIP----LDEDVD 494 (752)
T ss_pred CCCccceeE---ecCCCCcccHHHHHHHHHhcCC----cccCCC
Confidence 22777764 5688998887777776665444 445554
No 117
>KOG0976|consensus
Probab=96.47 E-value=5.9 Score=53.06 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=50.8
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q psy12680 2335 AKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDL----------CVKKKQRA 2404 (2567)
Q Consensus 2335 ~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~----------~~~rl~rA 2404 (2567)
..+++-.-++++++|++-+.+.......++.+..+++.++.|...-++...+.+++++.+-. ++..|.+|
T Consensus 343 rrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a 422 (1265)
T KOG0976|consen 343 RRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEA 422 (1265)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHH
Confidence 34455555555666666555555555555555555555555555544444454444443332 33336666
Q ss_pred HHHHhhhhhhhccHHHHHHHHHHHh
Q psy12680 2405 EDLIGKLGGEKERWSSTAKMLNEKY 2429 (2567)
Q Consensus 2405 ~~Li~~L~~Ek~RW~~~~~~l~~~~ 2429 (2567)
..=++.++.+..-=..+...|+.-.
T Consensus 423 ~ekld~mgthl~mad~Q~s~fk~Lk 447 (1265)
T KOG0976|consen 423 LEKLDLMGTHLSMADYQLSNFKVLK 447 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHhhHHHHH
Confidence 6666666666655555555554433
No 118
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.45 E-value=0.011 Score=75.38 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHH
Q psy12680 1322 RNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDII 1401 (2567)
Q Consensus 1322 R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~i 1401 (2567)
+....+..+...+.||++.|++||||+.+.+..... .....--++.+||++.+. +.+
T Consensus 10 ~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~------------------s~r~~~pfv~vnc~~~~~-----~~l 66 (329)
T TIGR02974 10 EVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL------------------SKRWQGPLVKLNCAALSE-----NLL 66 (329)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh------------------cCccCCCeEEEeCCCCCh-----HHH
Confidence 445556677788999999999999999887643211 111223567899997652 334
Q ss_pred HhhhhcccCCccCCC---------CCcEEEEEEcCCC-CccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeee
Q psy12680 1402 MSKLDKRRKGVYGPP---------LGKRCVVFVDDVN-MPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLM 1471 (2567)
Q Consensus 1402 es~lekr~~~~~gp~---------~gK~~vvFiDDiN-mP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v 1471 (2567)
++.+.-..++.|... ....-++|+|++. ||. ....-|-++++.+.+....... ..-.|+.+|
T Consensus 67 ~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~-------~~Q~~Ll~~l~~~~~~~~g~~~-~~~~~~RiI 138 (329)
T TIGR02974 67 DSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL-------LVQEKLLRVIEYGEFERVGGSQ-TLQVDVRLV 138 (329)
T ss_pred HHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH-------HHHHHHHHHHHcCcEEecCCCc-eeccceEEE
Confidence 444432222222111 1234578999987 332 2234455566655543222211 123578899
Q ss_pred eecCCCC----CCCCCCcchhccccceeccCCCH----HHHHHHHHHHHH
Q psy12680 1472 CAMGPPS----TGNTVTPRFSRHFNQIVINKFDD----DTMVTIFSKILL 1513 (2567)
Q Consensus 1472 ~am~Ppg----gg~~is~Rf~r~f~vi~i~~p~~----~sL~~If~~il~ 1513 (2567)
++.+.+- ..+...++|...++++.+.-|+- +.+..+...++.
T Consensus 139 ~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 139 CATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred EechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 9988652 12345567777776655555543 344444444443
No 119
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0032 Score=77.20 Aligned_cols=134 Identities=20% Similarity=0.286 Sum_probs=76.7
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHh--hhhcccCC
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMS--KLDKRRKG 1411 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies--~lekr~~~ 1411 (2567)
-++|||.||||||||.+++++-... .-+|=.---|+-+|..|=. +|- +.
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T--------------------------~AtFIrvvgSElVqKYiGEGaRlV---Re 235 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQT--------------------------DATFIRVVGSELVQKYIGEGARLV---RE 235 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc--------------------------CceEEEeccHHHHHHHhccchHHH---HH
Confidence 4789999999999999988632110 0112122234566665411 000 01
Q ss_pred ccCCC-CCcEEEEEEcCCCCccccccCC--------CC-hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1412 VYGPP-LGKRCVVFVDDVNMPLKEEFGA--------QP-PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1412 ~~gp~-~gK~~vvFiDDiNmP~~d~yGt--------Q~-~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
.|.-+ ...-||+|+|+|.--.--.|.+ |. .+|||-|+ -||=.+ -||.+++|-|-|-.
T Consensus 236 lF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql---DGFD~~--------~nvKVI~ATNR~D~-- 302 (406)
T COG1222 236 LFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL---DGFDPR--------GNVKVIMATNRPDI-- 302 (406)
T ss_pred HHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc---cCCCCC--------CCeEEEEecCCccc--
Confidence 12222 1335999999987655544432 11 23555554 344322 36778898886643
Q ss_pred CCCcchh---ccccceeccCCCHHHHHHHHHH
Q psy12680 1482 TVTPRFS---RHFNQIVINKFDDDTMVTIFSK 1510 (2567)
Q Consensus 1482 ~is~Rf~---r~f~vi~i~~p~~~sL~~If~~ 1510 (2567)
++|-++ |.=+.|-+|.|+.+.=..||..
T Consensus 303 -LDPALLRPGR~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 303 -LDPALLRPGRFDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred -cChhhcCCCcccceeecCCCCHHHHHHHHHH
Confidence 344332 3344567899999999999874
No 120
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.45 E-value=1.4 Score=66.49 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=14.2
Q ss_pred ecCch--hHHHHHHhhhccCCCeEEECCChhhHH
Q psy12680 2519 IDPQE--QANKWIKNMEKANGLNVIRLSNTDYMR 2550 (2567)
Q Consensus 2519 IDPq~--Qa~~Wik~~~~~~~l~v~~~~~~~f~~ 2550 (2567)
+||.+ .-..+|+.+.+...+-+ ...++.++.
T Consensus 1124 ld~~~~~~~~~~~~~~~~~~~~i~-~sh~~~~~~ 1156 (1179)
T TIGR02168 1124 LDDANVERFANLLKEFSKNTQFIV-ITHNKGTME 1156 (1179)
T ss_pred ccHHHHHHHHHHHHHhccCCEEEE-EEcChhHHH
Confidence 45543 33356666543333323 334455554
No 121
>KOG0730|consensus
Probab=96.43 E-value=0.044 Score=72.29 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred cccEEEEcCCCCChHHHHHHHHH
Q psy12680 1805 RWGFMIVGLSFAGKTCAYRMLSE 1827 (2567)
Q Consensus 1805 r~~~lLVG~~GSGK~sl~rlla~ 1827 (2567)
.-|+||-||+|+|||+++|.+|.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAn 490 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALAN 490 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhh
Confidence 34689999999999999998874
No 122
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.43 E-value=0.0064 Score=83.91 Aligned_cols=121 Identities=23% Similarity=0.325 Sum_probs=81.2
Q ss_pred CCCCCCCCchhHHHHHHHHhc-----------------------------------CeEEEEeCCCC-------ccHHH-
Q psy12680 5 PEGPAGTGKTETTKDLAKAVA-----------------------------------KLCIVFNCSDS-------MDYIG- 41 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG-----------------------------------~~~~vfNCs~~-------~d~~~- 41 (2567)
..||.|||||..++.|++.+. .+.+..+|+-. +|+..
T Consensus 30 i~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~ 109 (633)
T TIGR02442 30 IRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERA 109 (633)
T ss_pred EEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHH
Confidence 459999999999999999992 34444555432 22111
Q ss_pred H--HH--hhhhhh-h-cCccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCC
Q psy12680 42 L--GK--FFKGLI-A-TGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAG 115 (2567)
Q Consensus 42 m--~r--if~Gl~-q-~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaG 115 (2567)
+ |+ +-.|+. + -|.=+|+||+||++.++.+.+.+-+ ..+.-++.-+|....+...+.+..||||.-
T Consensus 110 l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l-------e~g~~~v~r~g~~~~~~~~~~lIat~np~e-- 180 (633)
T TIGR02442 110 LREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA-------AMGVNRVEREGLSVSHPARFVLIGTMNPEE-- 180 (633)
T ss_pred hhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH-------hcCCEEEEECCceeeecCCeEEEEecCCCC--
Confidence 0 00 112321 0 1224899999999999888776544 445556777888889999999999999953
Q ss_pred CCCchhhHhhccccccccCCC
Q psy12680 116 RSELPDNLKSLFRTVAMMVPD 136 (2567)
Q Consensus 116 RseLPdnLk~lFRpvam~~PD 136 (2567)
.+||+.|-.-| .+.+.+|+
T Consensus 181 -g~l~~~L~dR~-~l~i~v~~ 199 (633)
T TIGR02442 181 -GDLRPQLLDRF-GLCVDVAA 199 (633)
T ss_pred -CCCCHHHHhhc-ceEEEccC
Confidence 26888888777 34444544
No 123
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.41 E-value=0.0019 Score=80.43 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCCccccccCCCChH--HHH-HHHh---h------cccccccCcceeeeeeeeeeeeecCCCCCCCCCCc
Q psy12680 1418 GKRCVVFVDDVNMPLKEEFGAQPPI--EIL-RQWL---D------HWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTP 1485 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d~yGtQ~~i--elL-RQli---d------~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~ 1485 (2567)
++-||+|||||.--....-++|... .++ -||+ | -.|.|+.. ....++-+|+|.|-|.. +.|
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~----~~~~~V~VIaTTNrpd~---LDp 283 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREK----EEIPRVPIIVTGNDFST---LYA 283 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccccccc----ccCCCceEEEeCCCccc---CCH
Confidence 4779999999984333211333332 121 3333 3 25555211 12345677888876643 556
Q ss_pred chhc--cccceeccCCCHHHHHHHHHHHHH
Q psy12680 1486 RFSR--HFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1486 Rf~r--~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
-|+| .|-.+ +..|+.+.-..|+..+++
T Consensus 284 ALlRpGRfDk~-i~lPd~e~R~eIL~~~~r 312 (413)
T PLN00020 284 PLIRDGRMEKF-YWAPTREDRIGVVHGIFR 312 (413)
T ss_pred hHcCCCCCCce-eCCCCHHHHHHHHHHHhc
Confidence 5666 45443 247999999988876653
No 124
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.40 E-value=4.6 Score=53.83 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2335 AKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKK 2384 (2567)
Q Consensus 2335 ~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~ 2384 (2567)
-+.+.=++.+|..+...-..+.+.|...+-+.+.+..+++....++.+..
T Consensus 303 qq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~ 352 (546)
T PF07888_consen 303 QQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR 352 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777666667777777666666666666666655554443
No 125
>PRK04195 replication factor C large subunit; Provisional
Probab=96.39 E-value=0.013 Score=78.58 Aligned_cols=157 Identities=13% Similarity=0.281 Sum_probs=91.2
Q ss_pred cceeeeCchhhHHHHHHHHHHhc--CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecc
Q psy12680 1311 NQIIVTTEETLRNIALMKLLVTH--QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNF 1388 (2567)
Q Consensus 1311 ~~ilVpT~dT~R~~~ll~~ll~~--~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnf 1388 (2567)
.+++.+.....+...++..|..+ ..+++|+||+|||||+++++ +.+.+ .+.++.+|.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~a------------------la~el---~~~~ielna 72 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHA------------------LANDY---GWEVIELNA 72 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHH------------------HHHHc---CCCEEEEcc
Confidence 34444433334444445555532 57899999999999988854 22333 356777888
Q ss_pred ccccCHHHHHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccc-cccCCCChHHHHHHHhhcccccccCcceeeeeee
Q psy12680 1389 SAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLK-EEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIE 1467 (2567)
Q Consensus 1389 Sa~Tts~~~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~-d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~d 1467 (2567)
|...+...+...+...... ...+| .++-||++||+..-.. +.. ...+-|..+++.. +
T Consensus 73 sd~r~~~~i~~~i~~~~~~--~sl~~---~~~kvIiIDEaD~L~~~~d~---~~~~aL~~~l~~~--------------~ 130 (482)
T PRK04195 73 SDQRTADVIERVAGEAATS--GSLFG---ARRKLILLDEVDGIHGNEDR---GGARAILELIKKA--------------K 130 (482)
T ss_pred cccccHHHHHHHHHHhhcc--CcccC---CCCeEEEEecCcccccccch---hHHHHHHHHHHcC--------------C
Confidence 7766666666655433221 11222 2566788888754221 111 2234444555422 2
Q ss_pred eeeeeecCCCCCCCCCCc-chhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1468 IQLMCAMGPPSTGNTVTP-RFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1468 iq~v~am~Ppggg~~is~-Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
..+|+++|.+.. +.+ -+.+....+.++.|+...+..+...++.
T Consensus 131 ~~iIli~n~~~~---~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 131 QPIILTANDPYD---PSLRELRNACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred CCEEEeccCccc---cchhhHhccceEEEecCCCHHHHHHHHHHHHH
Confidence 346677776643 233 2445567788899999999888887764
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.38 E-value=0.0053 Score=79.46 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=46.5
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc--H--HHHHHhhhhhhh---------cCccccccccccCCc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD--Y--IGLGKFFKGLIA---------TGAWACFDEFNRIDV 66 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d--~--~~m~rif~Gl~q---------~GaW~CFDEfNri~~ 66 (2567)
.||+|||||+++|.||+.+|.+.+.++|+.-.. | ...+.++.++.+ .++-.+|||++++..
T Consensus 122 ~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 122 IGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred ECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 499999999999999999999999999986321 1 123444544433 234689999999987
No 127
>KOG2028|consensus
Probab=96.36 E-value=0.0067 Score=73.69 Aligned_cols=134 Identities=18% Similarity=0.357 Sum_probs=82.6
Q ss_pred HHHHHHhcCC--CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc-CHHHHHHHHH
Q psy12680 1326 LMKLLVTHQK--PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT-SANQTQDIIM 1402 (2567)
Q Consensus 1326 ll~~ll~~~~--pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T-ts~~~q~~ie 1402 (2567)
++..++.++. ..+|-||+|||||++.+.. .+..... ....+..||.+ +-+.+.+++|
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArli------------------a~tsk~~--SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLI------------------ASTSKKH--SYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHH------------------HhhcCCC--ceEEEEEeccccchHHHHHHHH
Confidence 4556666553 4688999999999877531 1111112 23345556653 3346777776
Q ss_pred hhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhccccccc--Ccceeeeee--eeeeeeecCCCC
Q psy12680 1403 SKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDR--KDVVAVKLI--EIQLMCAMGPPS 1478 (2567)
Q Consensus 1403 s~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr--~~~~~~~i~--diq~v~am~Ppg 1478 (2567)
+.=. +---.+|+.|+|+|+|+- |++ ++...=.|+ +|.+|+|..-.
T Consensus 212 ~aq~------~~~l~krkTilFiDEiHR------------------------FNksQQD~fLP~VE~G~I~lIGATTEN- 260 (554)
T KOG2028|consen 212 QAQN------EKSLTKRKTILFIDEIHR------------------------FNKSQQDTFLPHVENGDITLIGATTEN- 260 (554)
T ss_pred HHHH------HHhhhcceeEEEeHHhhh------------------------hhhhhhhcccceeccCceEEEecccCC-
Confidence 5321 112235789999999874 222 122222343 58888775311
Q ss_pred CCCCCCcchhccccceeccCCCHHHHHHHHHH
Q psy12680 1479 TGNTVTPRFSRHFNQIVINKFDDDTMVTIFSK 1510 (2567)
Q Consensus 1479 gg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~ 1510 (2567)
-.+.+..-+++...||++...+-+.+..|...
T Consensus 261 PSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 261 PSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred CccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 12456667788899999999999999988874
No 128
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.36 E-value=0.005 Score=80.11 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=48.2
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc--H--HHHHHhhhhhhh---------cCccccccccccCCch
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD--Y--IGLGKFFKGLIA---------TGAWACFDEFNRIDVE 67 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d--~--~~m~rif~Gl~q---------~GaW~CFDEfNri~~~ 67 (2567)
.||+|||||+.++.||+.++.+.+.++|++-.. | ..+++++.++.+ .+.=.++||++++...
T Consensus 114 ~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 114 IGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 599999999999999999999999999987432 1 234556555432 3456789999999864
No 129
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.36 E-value=0.00087 Score=77.05 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=69.4
Q ss_pred CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhc-cccccceeeccccccCHHHHHHHHHhhhhcccCCccC
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELS-IEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYG 1414 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~-~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~~g 1414 (2567)
.++|+||+|+|||.+++..- +.+. ...-..+.+|+|..|......+.+..-+-...+.+-.
T Consensus 5 ~~ll~GpsGvGKT~la~~la------------------~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~ 66 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALA------------------ELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGA 66 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHH------------------HHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------HHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeec
Confidence 47899999999998886422 2222 2334577899999998333222221111111110000
Q ss_pred CCCCcEEEEEEcCCCCccc------cccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCC
Q psy12680 1415 PPLGKRCVVFVDDVNMPLK------EEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPP 1477 (2567)
Q Consensus 1415 p~~gK~~vvFiDDiNmP~~------d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Pp 1477 (2567)
...| |||+|+|.=..+ |.+| ..+...|=|++|.|-+-|... .-+...++-||++.|-.
T Consensus 67 ~~~g---VVllDEidKa~~~~~~~~~v~~-~~V~~~LL~~le~g~~~d~~g-~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 67 EEGG---VVLLDEIDKAHPSNSGGADVSG-EGVQNSLLQLLEGGTLTDSYG-RTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp HHHT---EEEEETGGGCSHTTTTCSHHHH-HHHHHHHHHHHHHSEEEETTC-CEEEGTTEEEEEEESSS
T ss_pred cchh---hhhhHHHhhccccccccchhhH-HHHHHHHHHHhcccceecccc-eEEEeCCceEEEecccc
Confidence 0112 999999764433 1111 245677778888766655433 56677889999988854
No 130
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0024 Score=86.76 Aligned_cols=98 Identities=29% Similarity=0.466 Sum_probs=75.4
Q ss_pred CCCCCCCchhHHHHHHHHhc---CeEEEEeCCCCccHHHHHHhhh------hhhhcC-----------ccccccccccCC
Q psy12680 6 EGPAGTGKTETTKDLAKAVA---KLCIVFNCSDSMDYIGLGKFFK------GLIATG-----------AWACFDEFNRID 65 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG---~~~~vfNCs~~~d~~~m~rif~------Gl~q~G-----------aW~CFDEfNri~ 65 (2567)
.||+|+||||++|.||..|. ...+-||.||-|+-.+++|++- |--++| +=..|||+.+=.
T Consensus 527 ~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH 606 (786)
T COG0542 527 LGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH 606 (786)
T ss_pred eCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC
Confidence 69999999999999999999 9999999999999999999872 333333 356799999999
Q ss_pred chhHHHHHHHHHhhhhh-hhcCCceEEEcCeEEEeeCceeEEEEeCCCC
Q psy12680 66 VEVLSVVAQQILTIQRG-VTLGEEEILFEGTILKLDRTCSVFITMNPGY 113 (2567)
Q Consensus 66 ~~vLSvvaqqi~~Iq~a-~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgY 113 (2567)
++|+-++-|-+.. + +..+ .|++|.. .|+=|++|-|-|.
T Consensus 607 pdV~nilLQVlDd---GrLTD~------~Gr~VdF-rNtiIImTSN~Gs 645 (786)
T COG0542 607 PDVFNLLLQVLDD---GRLTDG------QGRTVDF-RNTIIIMTSNAGS 645 (786)
T ss_pred HHHHHHHHHHhcC---CeeecC------CCCEEec-ceeEEEEecccch
Confidence 9999988876642 1 1111 2444444 4556788888664
No 131
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.34 E-value=0.0099 Score=74.25 Aligned_cols=129 Identities=20% Similarity=0.339 Sum_probs=83.8
Q ss_pred HHHHHhcC--CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHH-HHHHHHHh
Q psy12680 1327 MKLLVTHQ--KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSAN-QTQDIIMS 1403 (2567)
Q Consensus 1327 l~~ll~~~--~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~-~~q~~ies 1403 (2567)
+..++.++ .+.+|.||||||||++.+.. . .....-+.-|||.|+.- .++.++|.
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~li------------------A-----~~~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLI------------------A-----GTTNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHH------------------H-----HhhCCceEEeccccccHHHHHHHHHH
Confidence 45566655 46799999999999877531 1 12233456688887654 56666655
Q ss_pred hhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeee--eeeeeeec--CCCCC
Q psy12680 1404 KLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLI--EIQLMCAM--GPPST 1479 (2567)
Q Consensus 1404 ~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~--diq~v~am--~Ppgg 1479 (2567)
.-..+ + .|++.|+|+|+|+-=.+.+ + +...-.++ .+.+|+|. ||
T Consensus 96 a~~~~-----~--~gr~tiLflDEIHRfnK~Q----Q------------------D~lLp~vE~G~iilIGATTENP--- 143 (436)
T COG2256 96 ARKNR-----L--LGRRTILFLDEIHRFNKAQ----Q------------------DALLPHVENGTIILIGATTENP--- 143 (436)
T ss_pred HHHHH-----h--cCCceEEEEehhhhcChhh----h------------------hhhhhhhcCCeEEEEeccCCCC---
Confidence 32222 1 3899999999998532221 1 11111233 36677654 33
Q ss_pred CCCCCcchhccccceeccCCCHHHHHHHHHH
Q psy12680 1480 GNTVTPRFSRHFNQIVINKFDDDTMVTIFSK 1510 (2567)
Q Consensus 1480 g~~is~Rf~r~f~vi~i~~p~~~sL~~If~~ 1510 (2567)
.+.+++-+++...++.+-..+.+.+..+...
T Consensus 144 sF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 144 SFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred CeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 2567888899999999999999999988876
No 132
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.34 E-value=0.007 Score=81.54 Aligned_cols=121 Identities=21% Similarity=0.240 Sum_probs=78.2
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCC------ccHHHHHHhhhhhh-hcCccccccccccCCch----------
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDS------MDYIGLGKFFKGLI-ATGAWACFDEFNRIDVE---------- 67 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~------~d~~~m~rif~Gl~-q~GaW~CFDEfNri~~~---------- 67 (2567)
..||+|||||.++|.+|+.+|.+++.++|++- ...+.+.++|.-+- .+.+-.+|||++.|...
T Consensus 93 L~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~ 172 (495)
T TIGR01241 93 LVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGND 172 (495)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccH
Confidence 46999999999999999999999999999863 33456777776643 45689999999887432
Q ss_pred -hHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHHH
Q psy12680 68 -VLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISEI 143 (2567)
Q Consensus 68 -vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaEi 143 (2567)
.-.++.+.+..+. .... +...-|+.|-|+- ..|++.|.. +-|-|.+-.||..-..+|
T Consensus 173 ~~~~~~~~lL~~~d-~~~~--------------~~~v~vI~aTn~~----~~ld~al~r~gRfd~~i~i~~Pd~~~R~~i 233 (495)
T TIGR01241 173 EREQTLNQLLVEMD-GFGT--------------NTGVIVIAATNRP----DVLDPALLRPGRFDRQVVVDLPDIKGREEI 233 (495)
T ss_pred HHHHHHHHHHhhhc-cccC--------------CCCeEEEEecCCh----hhcCHHHhcCCcceEEEEcCCCCHHHHHHH
Confidence 2223333222221 1111 1123344455532 245555542 456788889999877777
Q ss_pred H
Q psy12680 144 I 144 (2567)
Q Consensus 144 ~ 144 (2567)
+
T Consensus 234 l 234 (495)
T TIGR01241 234 L 234 (495)
T ss_pred H
Confidence 4
No 133
>PLN03025 replication factor C subunit; Provisional
Probab=96.34 E-value=0.012 Score=74.76 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=78.2
Q ss_pred CCCCCCCchhHHHHHHHHh-c----CeEEEEeCCCCccHHHHHHhhhhhhhc------C--ccccccccccCCchhHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAV-A----KLCIVFNCSDSMDYIGLGKFFKGLIAT------G--AWACFDEFNRIDVEVLSVV 72 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-G----~~~~vfNCs~~~d~~~m~rif~Gl~q~------G--aW~CFDEfNri~~~vLSvv 72 (2567)
.||+|||||.+++.+|+.+ | ..++-+|.|+......+..+++-.++. | --.++||++++....-.++
T Consensus 40 ~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL 119 (319)
T PLN03025 40 SGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQAL 119 (319)
T ss_pred ECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHH
Confidence 6999999999999999998 3 347889999877776666666655543 2 3568999999875432111
Q ss_pred HHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 73 AQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 73 aqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
...+.. ..+++-++++-|+ +..+++.|++-...|.+-.|+..-+.+.+-
T Consensus 120 -------~~~lE~-------------~~~~t~~il~~n~----~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~ 168 (319)
T PLN03025 120 -------RRTMEI-------------YSNTTRFALACNT----SSKIIEPIQSRCAIVRFSRLSDQEILGRLM 168 (319)
T ss_pred -------HHHHhc-------------ccCCceEEEEeCC----ccccchhHHHhhhcccCCCCCHHHHHHHHH
Confidence 111110 0122334455563 346777888888889998898877776653
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.31 E-value=0.016 Score=76.38 Aligned_cols=81 Identities=9% Similarity=0.177 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccc---ccee
Q psy12680 1419 KRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF---NQIV 1495 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f---~vi~ 1495 (2567)
+.-++++||+..-.... ...+.+..+++. .|+.. ...++++..+|..=..+.+|+.+.| -++-
T Consensus 202 ~~dvLiIDDiq~l~~k~----~~qeelf~l~N~--l~~~~--------k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~ 267 (445)
T PRK12422 202 NVDALFIEDIEVFSGKG----ATQEEFFHTFNS--LHTEG--------KLIVISSTCAPQDLKAMEERLISRFEWGIAIP 267 (445)
T ss_pred cCCEEEEcchhhhcCCh----hhHHHHHHHHHH--HHHCC--------CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEe
Confidence 44588999997643221 223344444431 22211 1233444445544345778988888 4777
Q ss_pred ccCCCHHHHHHHHHHHHH
Q psy12680 1496 INKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1496 i~~p~~~sL~~If~~il~ 1513 (2567)
+..|+++.+..|....+.
T Consensus 268 l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 268 LHPLTKEGLRSFLERKAE 285 (445)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 899999999988876554
No 135
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.31 E-value=0.01 Score=75.36 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=88.3
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEE----EEeCCCCccHH-------------------------------HHHHhhh--
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCI----VFNCSDSMDYI-------------------------------GLGKFFK-- 47 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~----vfNCs~~~d~~-------------------------------~m~rif~-- 47 (2567)
..||.|||||.+++.+++.+=..=+ -|||...-... .-.|+|-
T Consensus 43 i~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i 122 (350)
T CHL00081 43 IMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI 122 (350)
T ss_pred EEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc
Confidence 5799999999999999888854221 35655532110 1122222
Q ss_pred ---------------hhhh--cCccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeC
Q psy12680 48 ---------------GLIA--TGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMN 110 (2567)
Q Consensus 48 ---------------Gl~q--~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmN 110 (2567)
|+.. .|.=.++||+||++.++.+.+.+ ++..+..++.-+|....+...+-+..|+|
T Consensus 123 D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLe-------am~e~~~~ier~G~s~~~p~rfiviaT~n 195 (350)
T CHL00081 123 DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLD-------SAASGWNTVEREGISIRHPARFVLVGSGN 195 (350)
T ss_pred cHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHH-------HHHhCCeEEeeCCeeeecCCCEEEEeccC
Confidence 2221 14567999999999998888655 34455556666788888888999999999
Q ss_pred CCCCCCCCchhhHhhcccc-ccccCCC-HHHHHHHHH
Q psy12680 111 PGYAGRSELPDNLKSLFRT-VAMMVPD-YALISEIIV 145 (2567)
Q Consensus 111 PgYaGRseLPdnLk~lFRp-vam~~PD-~~lIaEi~L 145 (2567)
|. . .+||+.|..-|-- |.|--|+ ...-.||+-
T Consensus 196 p~-e--g~l~~~LldRf~l~i~l~~~~~~~~e~~il~ 229 (350)
T CHL00081 196 PE-E--GELRPQLLDRFGMHAEIRTVKDPELRVKIVE 229 (350)
T ss_pred cc-c--CCCCHHHHHHhCceeecCCCCChHHHHHHHH
Confidence 97 2 3599988776652 4555665 476777764
No 136
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.31 E-value=0.011 Score=79.80 Aligned_cols=158 Identities=14% Similarity=0.172 Sum_probs=92.8
Q ss_pred HHHHHhcC---CCcccccCCCCcccceeehhhhhhccccccccc-h--hhhhhhhhc-cccccceeeccccccCHHHHHH
Q psy12680 1327 MKLLVTHQ---KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSG-F--QHFLLKELS-IEQWQPLIMNFSAQTSANQTQD 1399 (2567)
Q Consensus 1327 l~~ll~~~---~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~-~--~~~ll~~l~-~~~~~~~~lnfSa~Tts~~~q~ 1399 (2567)
|..++.++ +..||+||.|||||++++..-..+ ++..-... . ...--+.+. .....++.|+=++.+.-+.+.+
T Consensus 28 L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL-nCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIRe 106 (830)
T PRK07003 28 LTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL-NCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAA 106 (830)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHH
Confidence 34445554 346999999999998886422211 11100000 0 000000011 0112345566666666667777
Q ss_pred HHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1400 IIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1400 ~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
+++.- .|.|..++.-|++|||++|-..+ ....||+.+-+.- .++.||.+++-+.
T Consensus 107 LIe~a-------~~~P~~gr~KVIIIDEah~LT~~-----A~NALLKtLEEPP-------------~~v~FILaTtd~~- 160 (830)
T PRK07003 107 LLERA-------VYAPVDARFKVYMIDEVHMLTNH-----AFNAMLKTLEEPP-------------PHVKFILATTDPQ- 160 (830)
T ss_pred HHHHH-------HhccccCCceEEEEeChhhCCHH-----HHHHHHHHHHhcC-------------CCeEEEEEECChh-
Confidence 76532 36677778889999999986543 2456777654421 1356777776543
Q ss_pred CCCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1480 GNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1480 g~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+-+++.+.+|.+..++.+.+..+...|+.
T Consensus 161 --KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~ 192 (830)
T PRK07003 161 --KIPVTVLSRCLQFNLKQMPAGHIVSHLERILG 192 (830)
T ss_pred --hccchhhhheEEEecCCcCHHHHHHHHHHHHH
Confidence 35556667777888899999999888887764
No 137
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=96.28 E-value=0.56 Score=60.38 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=34.6
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2338 VGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCV 2398 (2567)
Q Consensus 2338 V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~ 2398 (2567)
++=..++++++++.|.+.++.|...+++|+.++...+....+-.....+.+..+..++.++
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~ 283 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAE 283 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence 3334455566666666666666666666666666665555555555555555555554444
No 138
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.27 E-value=0.009 Score=75.82 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=59.2
Q ss_pred CccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcccc-cc
Q psy12680 53 GAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRT-VA 131 (2567)
Q Consensus 53 GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRp-va 131 (2567)
|-..++||+||++.++.+.+.+-+ ..+..++.-+|...+++..+-+..|+||. ..+||+.|..-|-- +.
T Consensus 132 ~GvL~lDEi~~L~~~~Q~~Ll~~l-------~~g~~~v~r~G~~~~~~~r~iviat~np~---eg~l~~~LldRf~l~i~ 201 (337)
T TIGR02030 132 RGILYIDEVNLLEDHLVDVLLDVA-------ASGWNVVEREGISIRHPARFVLVGSGNPE---EGELRPQLLDRFGLHAE 201 (337)
T ss_pred CCEEEecChHhCCHHHHHHHHHHH-------HhCCeEEEECCEEEEcCCCEEEEeccccc---cCCCCHHHHhhcceEEE
Confidence 567999999999998888777643 34444566688888888999999999997 23599999888874 33
Q ss_pred ccCCCH-HHHHHHH
Q psy12680 132 MMVPDY-ALISEII 144 (2567)
Q Consensus 132 m~~PD~-~lIaEi~ 144 (2567)
|--|+- .--.+|+
T Consensus 202 l~~p~~~eer~eIL 215 (337)
T TIGR02030 202 IRTVRDVELRVEIV 215 (337)
T ss_pred CCCCCCHHHHHHHH
Confidence 444432 3334443
No 139
>CHL00176 ftsH cell division protein; Validated
Probab=96.26 E-value=0.0093 Score=81.61 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCCccccc----cCC-CChHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhc---
Q psy12680 1419 KRCVVFVDDVNMPLKEE----FGA-QPPIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSR--- 1489 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~d~----yGt-Q~~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r--- 1489 (2567)
..||+|+||++--.... -|. ......|.|++.. .|+-.. .++.+++|.|.|.. ++|.++|
T Consensus 275 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--------~~ViVIaaTN~~~~---LD~ALlRpGR 343 (638)
T CHL00176 275 SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN--------KGVIVIAATNRVDI---LDAALLRPGR 343 (638)
T ss_pred CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC--------CCeeEEEecCchHh---hhhhhhcccc
Confidence 34899999996432211 111 1222344555432 232211 25678888887643 3444443
Q ss_pred cccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1490 HFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1490 ~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.=..+.++.|+.+....|+...+..
T Consensus 344 Fd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 344 FDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred CceEEEECCCCHHHHHHHHHHHHhh
Confidence 2245788999999999998876643
No 140
>CHL00181 cbbX CbbX; Provisional
Probab=96.25 E-value=0.0063 Score=75.90 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=52.9
Q ss_pred eEEEeccCCCC---ccc-ccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCC--CCcCcccccccc-e
Q psy12680 933 CVVFVDDVNMP---LKE-EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFN-Q 1005 (2567)
Q Consensus 933 ~~~fiDD~nmp---~~~-~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~--~~i~~r~~r~f~-~ 1005 (2567)
.|+|||++..- ..+ .|| ....+.|.++|+.+. .++.+|+|..+..-- ..++|.|.|.|. .
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~-~e~~~~L~~~me~~~------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~ 190 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYG-SEAIEILLQVMENQR------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANH 190 (287)
T ss_pred CEEEEEccchhccCCCccchH-HHHHHHHHHHHhcCC------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCce
Confidence 49999999762 211 355 345667777777531 235566664332111 244577888887 5
Q ss_pred eeeccCCchhhHHHHHHHHhh
Q psy12680 1006 IVINKFDDDTMVTIFSKILLW 1026 (2567)
Q Consensus 1006 ~~~~~~~~~~l~~i~~~~l~~ 1026 (2567)
+.++.++.+++..|+..++..
T Consensus 191 i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 191 VDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEcCCcCHHHHHHHHHHHHHH
Confidence 779999999999999988854
No 141
>CHL00176 ftsH cell division protein; Validated
Probab=96.23 E-value=0.0085 Score=81.97 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=47.4
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCc------cHHHHHHhhhhhh-hcCccccccccccCC
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSM------DYIGLGKFFKGLI-ATGAWACFDEFNRID 65 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~------d~~~m~rif~Gl~-q~GaW~CFDEfNri~ 65 (2567)
-..||+|||||.++|.+|..+|.+++.++|++-. ..+.+..+|.-.. .+.+-.++||++++.
T Consensus 220 LL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 288 (638)
T CHL00176 220 LLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVG 288 (638)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhh
Confidence 3579999999999999999999999999998732 2233444554332 345689999999884
No 142
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.22 E-value=0.032 Score=74.98 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=96.4
Q ss_pred ceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc
Q psy12680 1312 QIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ 1391 (2567)
Q Consensus 1312 ~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~ 1391 (2567)
+++-..+-..+....+..+-..+.||+++|++||||+.+.+............+ .+...--++.+||++-
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~----------S~r~~~pfv~inCaal 289 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDAR----------QGKKSHPFVAVNCGAI 289 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhccccccc----------CccCCCCeEEeecccC
Confidence 344444455566667777888999999999999999988865332100000000 0112335788999987
Q ss_pred cCHHHHHHHHHhhhhcccCCcc-CCC---------CCcEEEEEEcCCC-CccccccCCCChHHHHHHHhhcccccccCcc
Q psy12680 1392 TSANQTQDIIMSKLDKRRKGVY-GPP---------LGKRCVVFVDDVN-MPLKEEFGAQPPIEILRQWLDHWMWYDRKDV 1460 (2567)
Q Consensus 1392 Tts~~~q~~ies~lekr~~~~~-gp~---------~gK~~vvFiDDiN-mP~~d~yGtQ~~ielLRQlid~~g~ydr~~~ 1460 (2567)
+. ..+|+.|.-..++.| |.. ....-.+|+|+|. ||. +...-|-.+++.+.+..-...
T Consensus 290 ~e-----~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~-------~~Q~kLl~~L~e~~~~r~G~~ 357 (538)
T PRK15424 290 AE-----SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL-------PLQTRLLRVLEEKEVTRVGGH 357 (538)
T ss_pred Ch-----hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH-------HHHHHHHhhhhcCeEEecCCC
Confidence 63 455666554333322 211 1223468999876 332 122333445554444321111
Q ss_pred eeeeeeeeeeeeecCCCCC----CCCCCcchhccccceeccCCCHH----HHHHHHHHHHHh
Q psy12680 1461 VAVKLIEIQLMCAMGPPST----GNTVTPRFSRHFNQIVINKFDDD----TMVTIFSKILLW 1514 (2567)
Q Consensus 1461 ~~~~i~diq~v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p~~~----sL~~If~~il~~ 1514 (2567)
. ..-.|+.+++|.+.+-. .+...+++...++++.+.-|+-. .+-.+...++..
T Consensus 358 ~-~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 358 Q-PVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred c-eeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHH
Confidence 1 11257888988875421 12344556666777666666543 344444444443
No 143
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.21 E-value=8.8 Score=57.87 Aligned_cols=120 Identities=12% Similarity=0.179 Sum_probs=72.3
Q ss_pred HHHHHHHHH----HHHHHHHhcchHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2322 CKWVIAICK----YDKVAKIVGPKKEALRQAEEKLQL---AMSALHEKQEQ-------NRIVQEKLQKLQNTLDAKKKEL 2387 (2567)
Q Consensus 2322 c~WV~A~~~----Y~~V~~~V~Pk~~~l~~ae~~l~~---a~~~L~~~~~~-------l~~l~~~l~~L~~~~~~~~~ek 2387 (2567)
..|.+.... .......+.|.+.+|.+++..+.. ++.-|.+.... -..++.-..+.+.+.+....++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1486)
T PRK04863 495 WDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESV 574 (1486)
T ss_pred HHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345444433 334577889999999999985443 33333333222 1234444455555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhcchhHHHHHHHH
Q psy12680 2388 KDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDVLIAAGV 2442 (2567)
Q Consensus 2388 ~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~l~GD~llaaa~ 2442 (2567)
..+.+.....+.+++.=..-|..|..=.+.|...-..+.. +..-.|..+-.+.-
T Consensus 575 ~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~-L~eq~g~~~~~~~~ 628 (1486)
T PRK04863 575 SEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR-LREQSGEEFEDSQD 628 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHH-HHHhcchhhcCHHH
Confidence 6666666666666666666677777777779988777776 55556666544433
No 144
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.19 E-value=0.026 Score=71.44 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=74.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcCC
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQN 446 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~ 446 (2567)
.+++.||||+|||++.+.++..+. .++ ..++ |..... -|.+...++..
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~----------~~~--~~~~----------~~~~~~-----~~~l~~~l~~~----- 79 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMG----------VNL--KITS----------GPALEK-----PGDLAAILTNL----- 79 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----------CCE--EEec----------cchhcC-----chhHHHHHHhc-----
Confidence 489999999999999999887652 111 1222 211111 12233344332
Q ss_pred CCceEEEeCC--CCCHHHHHHHHhhhcCCceeEe-ccc-----ceeecCCCCeEEEecCCcCcCCcceeeeceeEE-ecC
Q psy12680 447 ENRKWLIFDG--PVDAIWIENMNSVLDDNKKLCL-MSG-----EIIALAPTTSLIFEPQDLEVASPATVSRCGMIY-MEP 517 (2567)
Q Consensus 447 ~~~~WivfDG--pVDa~WIEnLNSVLDDNK~LtL-~nG-----ErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy-~~~ 517 (2567)
....++++|- -+.+.-.|.|.++|++.+..-+ .+| -++.+|+ ..++.-+......+|+-.||||+++ +++
T Consensus 80 ~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~li~~t~~~~~l~~~l~sR~~~~~~l~~ 158 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP-FTLVGATTRAGMLTSPLRDRFGIILRLEF 158 (305)
T ss_pred ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCC-eEEEEecCCccccCHHHHhhcceEEEeCC
Confidence 2335888884 3556677889999988775532 322 1345555 6677777777788899999999864 553
No 145
>PRK03918 chromosome segregation protein; Provisional
Probab=96.18 E-value=4.6 Score=59.02 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=12.7
Q ss_pred cccccCCCCcccceee
Q psy12680 1337 VMFIGPTGTGKSCYIT 1352 (2567)
Q Consensus 1337 vll~GptGTGKT~~i~ 1352 (2567)
.+++||.|||||+++.
T Consensus 26 ~~i~G~nG~GKStil~ 41 (880)
T PRK03918 26 NLIIGQNGSGKSSILE 41 (880)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 3578999999997774
No 146
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.15 E-value=0.015 Score=78.78 Aligned_cols=163 Identities=17% Similarity=0.259 Sum_probs=84.9
Q ss_pred hcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc-cCHHHHHHHHHhhhh---c
Q psy12680 1332 THQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ-TSANQTQDIIMSKLD---K 1407 (2567)
Q Consensus 1332 ~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~-Tts~~~q~~ies~le---k 1407 (2567)
....|++++||+|||||++.+......+.+.. + .. ...-..+.++++.. .+...+.+.+.+... .
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~--s--------~~-~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~ 152 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPA--S--------PF-KEGAAFVEIDATTARFDERGIADPLIGSVHDPIY 152 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccC--C--------Cc-CCCCCEEEEccccccCCccccchhhcCCcccchh
Confidence 34689999999999999988764432221110 0 00 01123455666532 222212111111110 0
Q ss_pred ccCCccC------CCC-----CcEEEEEEcCCCCccccccCCCChHHHHHHHhhcc------cccccCcce----e----
Q psy12680 1408 RRKGVYG------PPL-----GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHW------MWYDRKDVV----A---- 1462 (2567)
Q Consensus 1408 r~~~~~g------p~~-----gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~------g~ydr~~~~----~---- 1462 (2567)
+..+.+| |.. ...-++|+||++.=.++ ....|.+.++.+ +.|+..+-. .
T Consensus 153 ~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (531)
T TIGR02902 153 QGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIF 226 (531)
T ss_pred ccccccccCCcccccCchhhccCCcEEEEechhhCCHH------HHHHHHHHHHhCeeeeccccccccCcccccchhhhc
Confidence 0111122 211 22358999998864433 233344455543 455543211 0
Q ss_pred -eee-eeeeeeeecCCCCCCCCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1463 -VKL-IEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1463 -~~i-~diq~v~am~Ppggg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
..+ .|+.+++|.+..- ..++|.+.+.+..+.++.++.+.+..|....++
T Consensus 227 ~~~~~~d~rlI~ATt~~p--~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 227 QNGLPADFRLIGATTRNP--EEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred ccCcccceEEEEEecCCc--ccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 111 3567777654321 246777877788888999999999988887664
No 147
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.13 E-value=0.018 Score=80.73 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=88.7
Q ss_pred ceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc
Q psy12680 1312 QIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ 1391 (2567)
Q Consensus 1312 ~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~ 1391 (2567)
+++-..+-..+....+..+...+.||+++|++|||||.+.+..... ........+.+||++.
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~------------------s~r~~~~~v~i~c~~~ 438 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL------------------SGRNNRRMVKMNCAAM 438 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh------------------cCCCCCCeEEEecccC
Confidence 3333333444445566777788999999999999999887643211 1112345778898876
Q ss_pred cCHHHHHHHHHhhhhcccCCccCCC---------CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCccee
Q psy12680 1392 TSANQTQDIIMSKLDKRRKGVYGPP---------LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVA 1462 (2567)
Q Consensus 1392 Tts~~~q~~ies~lekr~~~~~gp~---------~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~ 1462 (2567)
+. ..+++.+..+.++.|... ....-++|+||+..=.. ....-|..+++.+.+.......
T Consensus 439 ~~-----~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~------~~Q~~L~~~l~~~~~~~~g~~~- 506 (686)
T PRK15429 439 PA-----GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL------ELQPKLLRVLQEQEFERLGSNK- 506 (686)
T ss_pred Ch-----hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCH------HHHHHHHHHHHhCCEEeCCCCC-
Confidence 42 233433333322222111 11224689999774221 2334455566666554322211
Q ss_pred eeeeeeeeeeecCCCCC----CCCCCcchhccccceeccCCCH
Q psy12680 1463 VKLIEIQLMCAMGPPST----GNTVTPRFSRHFNQIVINKFDD 1501 (2567)
Q Consensus 1463 ~~i~diq~v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p~~ 1501 (2567)
..-.|+.++++.+.+-. .+...+++...++++.+.-|+-
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpL 549 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPL 549 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCCh
Confidence 11247889999876532 1345555666667766665654
No 148
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.13 E-value=0.028 Score=71.80 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=75.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcC
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQ 445 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~ 445 (2567)
+.+++.||||+|||++.+.+++.+. ..+. .++-..+. ..|.+..+++..
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~----------~~~~--~~~~~~~~---------------~~~~l~~~l~~l---- 100 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMG----------VNIR--ITSGPALE---------------KPGDLAAILTNL---- 100 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhC----------CCeE--EEeccccc---------------ChHHHHHHHHhc----
Confidence 4689999999999999999988763 1111 11111110 123455555442
Q ss_pred CCCceEEEeCC--CCCHHHHHHHHhhhcCCceeE-ecccc-----eeecCCCCeEEEecCCcCcCCcceeeeceeE-Eec
Q psy12680 446 NENRKWLIFDG--PVDAIWIENMNSVLDDNKKLC-LMSGE-----IIALAPTTSLIFEPQDLEVASPATVSRCGMI-YME 516 (2567)
Q Consensus 446 ~~~~~WivfDG--pVDa~WIEnLNSVLDDNK~Lt-L~nGE-----rI~l~~~~~llFEv~dL~~ASPATVSRcGmV-y~~ 516 (2567)
.....|++|- -+....-|-+.+.|+|.+... +.+|. ++.+|+ +.++.-+......+|+-.||||++ .++
T Consensus 101 -~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~-~~li~at~~~~~l~~~L~sRf~~~~~l~ 178 (328)
T PRK00080 101 -EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP-FTLIGATTRAGLLTSPLRDRFGIVQRLE 178 (328)
T ss_pred -ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC-ceEEeecCCcccCCHHHHHhcCeeeecC
Confidence 2345777773 344455677788888876643 33332 334555 788888888888999999999974 454
No 149
>PRK03918 chromosome segregation protein; Provisional
Probab=96.13 E-value=4.7 Score=58.93 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhcchhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy12680 2389 DLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTW 2461 (2567)
Q Consensus 2389 ~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~ll~~W 2461 (2567)
.+..+++..+.+......-+..|..+...+...+..++..+..+-|-|=. |=+.-.|.+.+++++++..-
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~---Cp~c~~~L~~~~~~el~~~~ 457 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK---CPVCGRELTEEHRKELLEEY 457 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCcCCchhHHHHHHHH
Confidence 44444444444445555667777778888888888888776655432211 11234578888888775433
No 150
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.13 E-value=0.011 Score=73.92 Aligned_cols=85 Identities=12% Similarity=0.210 Sum_probs=52.5
Q ss_pred CceeEEEeccCC--CCcccccCCCChH--HHH-HHhh---hc------cccc-cccchhhhhhhhhhhhhccCCCCCCCC
Q psy12680 930 GKRCVVFVDDVN--MPLKEEFGAQPPI--EIL-RQWL---DH------WMWY-DRKDVVAVKLIEIQLMCAMGPPSTGNT 994 (2567)
Q Consensus 930 ~k~~~~fiDD~n--mp~~~~~g~q~~~--ell-rQ~~---~~------~~~y-d~~~~~~~~~~~~~~~~a~~p~~~~~~ 994 (2567)
++.|++|||||- .|..+ ++|-.. -++ .|+| |. +|.| +.. ...++-+|+|.|-|+ .
T Consensus 211 ~aPcVLFIDEIDA~~g~r~--~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~-----~~~~V~VIaTTNrpd---~ 280 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFG--TTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKE-----EIPRVPIIVTGNDFS---T 280 (413)
T ss_pred CCCeEEEEehhhhcCCCCC--CCCcchHHHHHHHHHHHHhcCCccccccccccccc-----cCCCceEEEeCCCcc---c
Confidence 578999999987 44443 344332 233 5555 32 4444 211 223566778877775 5
Q ss_pred cCccccc--ccceeeeccCCchhhHHHHHHHHh
Q psy12680 995 VTPRFSR--HFNQIVINKFDDDTMVTIFSKILL 1025 (2567)
Q Consensus 995 i~~r~~r--~f~~~~~~~~~~~~l~~i~~~~l~ 1025 (2567)
|.|-|.| .|... +..|+.++-..|...++.
T Consensus 281 LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r 312 (413)
T PLN00020 281 LYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFR 312 (413)
T ss_pred CCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhc
Confidence 6666666 66554 357999999998776653
No 151
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.011 Score=79.04 Aligned_cols=145 Identities=15% Similarity=0.196 Sum_probs=90.0
Q ss_pred HHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc------------CCccEEEEEeccCCCCcCcccccccCC
Q psy12680 358 IYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL------------GEHKVEIIVINPKSITMGQLYGQFDAV 425 (2567)
Q Consensus 358 Lye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~------------~~~~v~~~~inPKait~~eLyG~~d~~ 425 (2567)
.++.-.+.|..++.||+|+||||+.+.|++++.--...... .+....++.+|+.+
T Consensus 31 ~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas------------- 97 (509)
T PRK14958 31 ALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS------------- 97 (509)
T ss_pred HHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc-------------
Confidence 33444568999999999999999999999998521100000 01122344444432
Q ss_pred CCCCCcchHHHHHHHHHh----c-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcC
Q psy12680 426 SHEWSDGILAVSYRQFAM----S-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLE 500 (2567)
Q Consensus 426 T~EW~DGvls~i~R~~~~----~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~ 500 (2567)
+ .||= -+|+... . .....|.+|+|. ||-.=-+..|..|. +|- + .|+++.|||=+.|..
T Consensus 98 -~---~~v~--~iR~l~~~~~~~p~~~~~kV~iIDE-~~~ls~~a~naLLk---~LE--e-----pp~~~~fIlattd~~ 160 (509)
T PRK14958 98 -R---TKVE--DTRELLDNIPYAPTKGRFKVYLIDE-VHMLSGHSFNALLK---TLE--E-----PPSHVKFILATTDHH 160 (509)
T ss_pred -c---CCHH--HHHHHHHHHhhccccCCcEEEEEEC-hHhcCHHHHHHHHH---HHh--c-----cCCCeEEEEEECChH
Confidence 1 2221 1343322 2 223568999997 66665677777662 221 1 378999999999988
Q ss_pred cCCcceeeeceeEEecC-CCCchhhhHHhhhhc
Q psy12680 501 VASPATVSRCGMIYMEP-ATLGWECLVDSWLNT 532 (2567)
Q Consensus 501 ~ASPATVSRcGmVy~~~-~~lgw~~~v~sWl~~ 532 (2567)
...|.-.|||-++.|.+ +.-.+..++..|+.+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 88777799999998875 333344455555544
No 152
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.10 E-value=0.0037 Score=80.99 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCcccccc-----CCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhc--cc-
Q psy12680 1420 RCVVFVDDVNMPLKEEF-----GAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSR--HF- 1491 (2567)
Q Consensus 1420 ~~vvFiDDiNmP~~d~y-----GtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r--~f- 1491 (2567)
.+|+|+||++.-..... |.......+.+++..-..|+. ..++.+++|.|.+. .+++.++| .|
T Consensus 216 p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-------~~~v~vI~ttn~~~---~ld~al~r~grfd 285 (364)
T TIGR01242 216 PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP-------RGNVKVIAATNRPD---ILDPALLRPGRFD 285 (364)
T ss_pred CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC-------CCCEEEEEecCChh---hCChhhcCcccCc
Confidence 47999999875332211 122223334444432111221 12567888888774 35555554 22
Q ss_pred cceeccCCCHHHHHHHHHHHH
Q psy12680 1492 NQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1492 ~vi~i~~p~~~sL~~If~~il 1512 (2567)
..+.++.|+.+.-..|+...+
T Consensus 286 ~~i~v~~P~~~~r~~Il~~~~ 306 (364)
T TIGR01242 286 RIIEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred eEEEeCCcCHHHHHHHHHHHH
Confidence 357899999999999997654
No 153
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.10 E-value=11 Score=52.37 Aligned_cols=58 Identities=26% Similarity=0.306 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhcchh
Q psy12680 2374 QKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTG 2434 (2567)
Q Consensus 2374 ~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~l~G 2434 (2567)
..|+.+|..+..|...|+.++...+.++..... .-..|+.||...++.+..++..+-.
T Consensus 355 eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 355 EILECKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888877777666 6777888888888888776666554
No 154
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.08 E-value=16 Score=55.49 Aligned_cols=155 Identities=10% Similarity=0.067 Sum_probs=86.8
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHhHhhhH---HHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHH
Q psy12680 2283 FNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEG---LCKWVIAICKYDKVA-KIVGPKKEALRQAEEKLQLAMSA 2358 (2567)
Q Consensus 2283 fDkd~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~Aa~~---Lc~WV~A~~~Y~~V~-~~V~Pk~~~l~~ae~~l~~a~~~ 2358 (2567)
|+.+.-....+++|+...-+-|++.-+.-.....+-.- |-.|=-.+..|.... +++.-++.++.+++.++..++.+
T Consensus 687 f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~ 766 (1311)
T TIGR00606 687 FQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND 766 (1311)
T ss_pred CCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 44433335566666655544465555544444444332 333333335555554 45666677777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHh
Q psy12680 2359 LHEKQEQNRIVQEKLQKL-------------QNTLDAKKKEL----------------KDLQDELDLCVKKKQRAEDLIG 2409 (2567)
Q Consensus 2359 L~~~~~~l~~l~~~l~~L-------------~~~~~~~~~ek----------------~~L~~~~~~~~~rl~rA~~Li~ 2409 (2567)
|.+.+..+.++...++.+ ..+.....++. ++++.+++..+.++.....=+.
T Consensus 767 le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e 846 (1311)
T TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIE 846 (1311)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555544333 22222222222 3455555555566666655566
Q ss_pred hhhhhhccHHHHHHHHHHHhhcchhHHH
Q psy12680 2410 KLGGEKERWSSTAKMLNEKYYQLTGDVL 2437 (2567)
Q Consensus 2410 ~L~~Ek~RW~~~~~~l~~~~~~l~GD~l 2437 (2567)
.+..+..+.+..+..++.++..+-|.-+
T Consensus 847 ~l~~e~e~~~~eI~~Lq~ki~el~~~kl 874 (1311)
T TIGR00606 847 LNRKLIQDQQEQIQHLKSKTNELKSEKL 874 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888777776544443
No 155
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.08 E-value=0.037 Score=75.53 Aligned_cols=212 Identities=13% Similarity=0.135 Sum_probs=113.3
Q ss_pred eeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc
Q psy12680 1313 IIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT 1392 (2567)
Q Consensus 1313 ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T 1392 (2567)
++-..+-..+..-.+..+...+.||+++|++|||||.+.+..... .....--++.+||++.+
T Consensus 198 liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~------------------s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 198 IIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL------------------SPRAKRPFVKVNCAALS 259 (534)
T ss_pred eEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh------------------CCCCCCCeEEeecCCCC
Confidence 333444455556667777889999999999999999888653211 11122346789998765
Q ss_pred CHHHHHHHHHhhhhcccCCccCCC---------CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceee
Q psy12680 1393 SANQTQDIIMSKLDKRRKGVYGPP---------LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAV 1463 (2567)
Q Consensus 1393 ts~~~q~~ies~lekr~~~~~gp~---------~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~ 1463 (2567)
. ..+++.+-...++.|... ....-++|+|++.-=.. ....-|-++++.+.|........
T Consensus 260 ~-----~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~------~~Q~~Ll~~l~~~~~~~~~~~~~- 327 (534)
T TIGR01817 260 E-----TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP------AFQAKLLRVLQEGEFERVGGNRT- 327 (534)
T ss_pred H-----HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH------HHHHHHHHHHhcCcEEECCCCce-
Confidence 3 334454433323322111 12234789999863221 12344555666655543222111
Q ss_pred eeeeeeeeeecCCCCC----CCCCCcchhccccceeccCC--C--HHHHHHHHHHHHHhhhcccCCcccchhHHHHHHHH
Q psy12680 1464 KLIEIQLMCAMGPPST----GNTVTPRFSRHFNQIVINKF--D--DDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQA 1535 (2567)
Q Consensus 1464 ~i~diq~v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p--~--~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~a 1535 (2567)
.-.|+.+|++.+.+-. .+...+.|...++++.+.-| . .+.+..+...++..+-...+-...+ .+.....
T Consensus 328 ~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~---s~~a~~~ 404 (534)
T TIGR01817 328 LKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTI---TPSAIRV 404 (534)
T ss_pred EeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCC---CHHHHHH
Confidence 1247888888775421 13455667777776554444 3 2445556555554321111111111 1111111
Q ss_pred HHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhc
Q psy12680 1536 TLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLL 1572 (2567)
Q Consensus 1536 ti~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~ 1572 (2567)
. ...|+--|+|+|.++++-.+.
T Consensus 405 ----L-----------~~~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 405 ----L-----------MSCKWPGNVRELENCLERTAT 426 (534)
T ss_pred ----H-----------HhCCCCChHHHHHHHHHHHHH
Confidence 0 123456799999999887553
No 156
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.06 E-value=0.0029 Score=82.62 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=47.8
Q ss_pred cEEEEEEcCCCCccccccC-----CCChHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhc---
Q psy12680 1419 KRCVVFVDDVNMPLKEEFG-----AQPPIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSR--- 1489 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~d~yG-----tQ~~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r--- 1489 (2567)
..+|+|+||+.--....++ .......+.+++.. .|+ + .-.++.+++|.|.+. .+.|.++|
T Consensus 276 ~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~-~-------~~~~V~VI~ATNr~d---~LDpaLlRpGR 344 (438)
T PTZ00361 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF-D-------SRGDVKVIMATNRIE---SLDPALIRPGR 344 (438)
T ss_pred CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh-c-------ccCCeEEEEecCChH---HhhHHhccCCe
Confidence 4689999997643332221 11222222233221 122 1 123567888887553 34555553
Q ss_pred cccceeccCCCHHHHHHHHHHHH
Q psy12680 1490 HFNQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1490 ~f~vi~i~~p~~~sL~~If~~il 1512 (2567)
.-..|.++.|+.+....||...+
T Consensus 345 fd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 345 IDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHH
Confidence 34568899999999999998654
No 157
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.05 E-value=0.011 Score=77.96 Aligned_cols=139 Identities=14% Similarity=0.272 Sum_probs=80.6
Q ss_pred HHHHHHhcCC--CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHh
Q psy12680 1326 LMKLLVTHQK--PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMS 1403 (2567)
Q Consensus 1326 ll~~ll~~~~--pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies 1403 (2567)
.+..++.++. +++|+||+|||||++++... +.+. .....++.+.. ....+..+++.
T Consensus 26 ~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia------------------~~~~---~~~~~l~a~~~-~~~~ir~ii~~ 83 (413)
T PRK13342 26 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIA------------------GATD---APFEALSAVTS-GVKDLREVIEE 83 (413)
T ss_pred HHHHHHHcCCCceEEEECCCCCCHHHHHHHHH------------------HHhC---CCEEEEecccc-cHHHHHHHHHH
Confidence 3445555554 68999999999998886421 1111 12223333321 22345555443
Q ss_pred hhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCC
Q psy12680 1404 KLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTV 1483 (2567)
Q Consensus 1404 ~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~i 1483 (2567)
.-... ..|++.|+|+||++.-..+ ..+.|...++.+ .+.++++..... ...+
T Consensus 84 ~~~~~-------~~g~~~vL~IDEi~~l~~~------~q~~LL~~le~~--------------~iilI~att~n~-~~~l 135 (413)
T PRK13342 84 ARQRR-------SAGRRTILFIDEIHRFNKA------QQDALLPHVEDG--------------TITLIGATTENP-SFEV 135 (413)
T ss_pred HHHhh-------hcCCceEEEEechhhhCHH------HHHHHHHHhhcC--------------cEEEEEeCCCCh-hhhc
Confidence 22211 2457889999999753322 234455555532 133555432211 1246
Q ss_pred CcchhccccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1484 TPRFSRHFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1484 s~Rf~r~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.+.+.+.+.++.+..++.+.+..++..++..
T Consensus 136 ~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 136 NPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 6778888889999999999999999877644
No 158
>PRK06893 DNA replication initiation factor; Validated
Probab=96.05 E-value=0.014 Score=70.71 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=45.1
Q ss_pred EEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcccc---ceecc
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN---QIVIN 1497 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~---vi~i~ 1497 (2567)
-++++||+.....+. ..-+.|-++++. .|+... -+-++++-.+|..=....|++.+.+. ++.+.
T Consensus 93 dlLilDDi~~~~~~~----~~~~~l~~l~n~--~~~~~~-------~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~ 159 (229)
T PRK06893 93 DLVCLDDLQAVIGNE----EWELAIFDLFNR--IKEQGK-------TLLLISADCSPHALSIKLPDLASRLTWGEIYQLN 159 (229)
T ss_pred CEEEEeChhhhcCCh----HHHHHHHHHHHH--HHHcCC-------cEEEEeCCCChHHccccchhHHHHHhcCCeeeCC
Confidence 488999998654322 112233344432 122110 01234455555443344577777665 77899
Q ss_pred CCCHHHHHHHHHHHH
Q psy12680 1498 KFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1498 ~p~~~sL~~If~~il 1512 (2567)
.|+++....|+....
T Consensus 160 ~pd~e~~~~iL~~~a 174 (229)
T PRK06893 160 DLTDEQKIIVLQRNA 174 (229)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987654
No 159
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.014 Score=75.59 Aligned_cols=139 Identities=21% Similarity=0.248 Sum_probs=76.2
Q ss_pred HHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcC---cccccccCCCCCCCcchHHHHH
Q psy12680 362 MIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMG---QLYGQFDAVSHEWSDGILAVSY 438 (2567)
Q Consensus 362 ~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~---eLyG~~d~~T~EW~DGvls~i~ 438 (2567)
-++.|++++.||+|+||||+.+.+++++.--. +. ...+... +.+.+.+..+ +++ .+|+.++...|- +..++
T Consensus 35 ~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~--~~-~~~pc~~-c~~c~~~~~~~~~d~~-~~~~~~~~~v~~-ir~i~ 108 (363)
T PRK14961 35 GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQN--GI-TSNPCRK-CIICKEIEKGLCLDLI-EIDAASRTKVEE-MREIL 108 (363)
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCC--CC-CCCCCCC-CHHHHHHhcCCCCceE-EecccccCCHHH-HHHHH
Confidence 34579999999999999999999999874100 00 0000000 0000000000 111 123322222221 22233
Q ss_pred HHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEecC
Q psy12680 439 RQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 439 R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~~~ 517 (2567)
..+...+ ....+.+|+|. +|..--+..|..|.- -|. .|+++.+||=+.+.....|+-.|||-.+.+.|
T Consensus 109 ~~~~~~p~~~~~kviIIDE-a~~l~~~a~naLLk~--------lEe--~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~ 177 (363)
T PRK14961 109 DNIYYSPSKSRFKVYLIDE-VHMLSRHSFNALLKT--------LEE--PPQHIKFILATTDVEKIPKTILSRCLQFKLKI 177 (363)
T ss_pred HHHhcCcccCCceEEEEEC-hhhcCHHHHHHHHHH--------Hhc--CCCCeEEEEEcCChHhhhHHHHhhceEEeCCC
Confidence 3322222 23567899998 565554455554421 111 35678899988888888888899998888775
No 160
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.04 E-value=0.018 Score=73.75 Aligned_cols=116 Identities=20% Similarity=0.267 Sum_probs=71.4
Q ss_pred CCCCCCCCchhHHHHHHHHhc-----CeEEEEeCCCCccH--H--------------------HHHHhhhhh----hhc-
Q psy12680 5 PEGPAGTGKTETTKDLAKAVA-----KLCIVFNCSDSMDY--I--------------------GLGKFFKGL----IAT- 52 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG-----~~~~vfNCs~~~d~--~--------------------~m~rif~Gl----~q~- 52 (2567)
..||+|||||.+++.+++.+. ..++.+||++..+- . +....|+.+ +..
T Consensus 41 l~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (337)
T PRK12402 41 VQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYR 120 (337)
T ss_pred EECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcC
Confidence 479999999999999999984 34688899864211 0 011223222 221
Q ss_pred -----CccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc
Q psy12680 53 -----GAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF 127 (2567)
Q Consensus 53 -----GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF 127 (2567)
.-=.++||+..++.+....+...+.. . .+++.+++|.|- +..+++.|++-+
T Consensus 121 ~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-------~-------------~~~~~~Il~~~~----~~~~~~~L~sr~ 176 (337)
T PRK12402 121 PLSADYKTILLDNAEALREDAQQALRRIMEQ-------Y-------------SRTCRFIIATRQ----PSKLIPPIRSRC 176 (337)
T ss_pred CCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-------c-------------cCCCeEEEEeCC----hhhCchhhcCCc
Confidence 12378999999987654433322211 1 122333444431 235677888888
Q ss_pred ccccccCCCHHHHHHHH
Q psy12680 128 RTVAMMVPDYALISEII 144 (2567)
Q Consensus 128 Rpvam~~PD~~lIaEi~ 144 (2567)
..|.+..|+...+.+++
T Consensus 177 ~~v~~~~~~~~~~~~~l 193 (337)
T PRK12402 177 LPLFFRAPTDDELVDVL 193 (337)
T ss_pred eEEEecCCCHHHHHHHH
Confidence 88999999988776664
No 161
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.04 E-value=0.04 Score=74.16 Aligned_cols=172 Identities=16% Similarity=0.222 Sum_probs=97.1
Q ss_pred ceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc
Q psy12680 1312 QIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ 1391 (2567)
Q Consensus 1312 ~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~ 1391 (2567)
+++-..+-..+....+..+.....||++.|++||||+.+.+..... .+...--++.+||.+-
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~------------------S~r~~~pfv~inC~~l 274 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL------------------SGRRDFPFVAINCGAI 274 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh------------------cCcCCCCEEEeccccC
Confidence 3444445555666777778889999999999999999887643211 1112335678999987
Q ss_pred cCHHHHHHHHHhhhhcccCCcc-CCC----C-----CcEEEEEEcCCC-CccccccCCCChHHHHHHHhhcccccccCcc
Q psy12680 1392 TSANQTQDIIMSKLDKRRKGVY-GPP----L-----GKRCVVFVDDVN-MPLKEEFGAQPPIEILRQWLDHWMWYDRKDV 1460 (2567)
Q Consensus 1392 Tts~~~q~~ies~lekr~~~~~-gp~----~-----gK~~vvFiDDiN-mP~~d~yGtQ~~ielLRQlid~~g~ydr~~~ 1460 (2567)
+. ..+++.|....++.| |.. . ...=.+|+|++. ||. ....-|..+++.+.+......
T Consensus 275 ~e-----~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~-------~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 275 AE-----SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL-------PLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred Ch-----hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH-------HHHHHHHHHHhcCcEEecCCC
Confidence 63 445665554333332 111 0 223468988876 332 223344445555554432111
Q ss_pred eeeeeeeeeeeeecCCCCCC----CCCCcchhccccceeccCCCH----HHHHHHHHHHHHh
Q psy12680 1461 VAVKLIEIQLMCAMGPPSTG----NTVTPRFSRHFNQIVINKFDD----DTMVTIFSKILLW 1514 (2567)
Q Consensus 1461 ~~~~i~diq~v~am~Ppggg----~~is~Rf~r~f~vi~i~~p~~----~sL~~If~~il~~ 1514 (2567)
. ..-.|+.++++.+.+-.. +...++|...++++.+.-|+- +.+-.+...++..
T Consensus 343 ~-~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 343 E-PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred c-eeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 1 122578889888765321 334556666676666555543 3455555555543
No 162
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.00 E-value=0.012 Score=71.23 Aligned_cols=127 Identities=11% Similarity=0.090 Sum_probs=65.4
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGV 1412 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~ 1412 (2567)
.+.|++++||+|||||.++++... ...........++++.-+.. +
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~------------------~~~~~~~~~~~i~~~~~~~~------~----------- 85 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVA------------------DASYGGRNARYLDAASPLLA------F----------- 85 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH------------------HHHhCCCcEEEEehHHhHHH------H-----------
Confidence 457899999999999988764321 11111223344444322110 0
Q ss_pred cCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccc-
Q psy12680 1413 YGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF- 1491 (2567)
Q Consensus 1413 ~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f- 1491 (2567)
+.....-++++||+..-.. ...+.|.++++. ..+... -+.++++..+|... .+.+++.+.|
T Consensus 86 --~~~~~~~~liiDdi~~l~~------~~~~~L~~~~~~--~~~~~~-------~~vl~~~~~~~~~~-~l~~~L~sr~~ 147 (227)
T PRK08903 86 --DFDPEAELYAVDDVERLDD------AQQIALFNLFNR--VRAHGQ-------GALLVAGPAAPLAL-PLREDLRTRLG 147 (227)
T ss_pred --hhcccCCEEEEeChhhcCc------hHHHHHHHHHHH--HHHcCC-------cEEEEeCCCCHHhC-CCCHHHHHHHh
Confidence 0111223688999975321 123445555542 111100 01233333344322 2456666454
Q ss_pred --cceeccCCCHHHHHHHHHHHH
Q psy12680 1492 --NQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1492 --~vi~i~~p~~~sL~~If~~il 1512 (2567)
.++.++.|++.....+...+.
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHH
Confidence 678899999988777665543
No 163
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.00 E-value=0.013 Score=76.52 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=23.1
Q ss_pred HHHHHHhcCCCcccccCCCCcccceeeh
Q psy12680 1326 LMKLLVTHQKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1326 ll~~ll~~~~pvll~GptGTGKT~~i~~ 1353 (2567)
++...+..+.++++.||||||||.+++.
T Consensus 31 lll~aalag~hVLL~GpPGTGKT~LAra 58 (498)
T PRK13531 31 LCLLAALSGESVFLLGPPGIAKSLIARR 58 (498)
T ss_pred HHHHHHccCCCEEEECCCChhHHHHHHH
Confidence 3445567899999999999999988864
No 164
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.00 E-value=5.8 Score=60.22 Aligned_cols=86 Identities=8% Similarity=0.115 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHH
Q psy12680 2342 KEALRQAEEKLQLAMSALHEK--QEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWS 2419 (2567)
Q Consensus 2342 ~~~l~~ae~~l~~a~~~L~~~--~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~ 2419 (2567)
+.++...+..-...+..|... +.++.+++.++..|..+..+. ....++.+......++.....-..+|.|++.+=.
T Consensus 1004 ~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606 1004 RQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333 444455555555555555443 3356667777777777777777777778877777
Q ss_pred HHHHHHHHHh
Q psy12680 2420 STAKMLNEKY 2429 (2567)
Q Consensus 2420 ~~~~~l~~~~ 2429 (2567)
.++..++.++
T Consensus 1082 ~qi~~l~~eL 1091 (1311)
T TIGR00606 1082 KEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHH
Confidence 7777777777
No 165
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.018 Score=76.50 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=76.5
Q ss_pred CCCCCCCchhHHHHHHHHhcC------------------------eEEEEeCCCCccHHHHHHhhhhhhhc---C--ccc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAK------------------------LCIVFNCSDSMDYIGLGKFFKGLIAT---G--AWA 56 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~------------------------~~~vfNCs~~~d~~~m~rif~Gl~q~---G--aW~ 56 (2567)
.||+|||||.+++.+|+.++. .++.+|.+.......+-++..-+... | -=.
T Consensus 42 ~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVv 121 (472)
T PRK14962 42 AGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVY 121 (472)
T ss_pred ECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEE
Confidence 699999999999999999975 46778876555555555444322211 2 235
Q ss_pred cccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCC
Q psy12680 57 CFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPD 136 (2567)
Q Consensus 57 CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD 136 (2567)
.+||+.++..+.+..+ ...+......+.| |++|-||. .||.-|++-++.|.+-.|+
T Consensus 122 IIDE~h~Lt~~a~~~L-------Lk~LE~p~~~vv~------------Ilattn~~-----kl~~~L~SR~~vv~f~~l~ 177 (472)
T PRK14962 122 IIDEVHMLTKEAFNAL-------LKTLEEPPSHVVF------------VLATTNLE-----KVPPTIISRCQVIEFRNIS 177 (472)
T ss_pred EEEChHHhHHHHHHHH-------HHHHHhCCCcEEE------------EEEeCChH-----hhhHHHhcCcEEEEECCcc
Confidence 6899999876543332 2222221122222 45666653 6899999999999999999
Q ss_pred HHHHHHHHH
Q psy12680 137 YALISEIIV 145 (2567)
Q Consensus 137 ~~lIaEi~L 145 (2567)
..-|.+++-
T Consensus 178 ~~el~~~L~ 186 (472)
T PRK14962 178 DELIIKRLQ 186 (472)
T ss_pred HHHHHHHHH
Confidence 887776643
No 166
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.98 E-value=0.024 Score=73.87 Aligned_cols=77 Identities=22% Similarity=0.433 Sum_probs=42.9
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHH----HHHHHHHhhhhccc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSAN----QTQDIIMSKLDKRR 1409 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~----~~q~~ies~lekr~ 1409 (2567)
..+++|+||||||||++++.. .+.+ ..-.+.++.+..|.+. .+..++...++...
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~l------------------A~~l---~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~ 166 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTL------------------ARIL---DVPFAIADATTLTEAGYVGEDVENILLKLLQAAD 166 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHH------------------HHHh---CCCceecchhhcccCCcccchHHHHHHHHHHhcc
Confidence 468999999999999888642 1111 1223344555444321 23333333232221
Q ss_pred CCccCCCCCcEEEEEEcCCCCcccc
Q psy12680 1410 KGVYGPPLGKRCVVFVDDVNMPLKE 1434 (2567)
Q Consensus 1410 ~~~~gp~~gK~~vvFiDDiNmP~~d 1434 (2567)
+-+......|||+|+++.-...
T Consensus 167 ---~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 167 ---YDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred ---ccHHHcCCcEEEEechhhhccc
Confidence 1112235579999999987654
No 167
>KOG0726|consensus
Probab=95.98 E-value=0.0066 Score=71.77 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=46.8
Q ss_pred EEEEEcCCCCccccccCCCC---------hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchh---
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQP---------PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFS--- 1488 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ~---------~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~--- 1488 (2567)
-|||||+|.--..-.|.++. .+|||-|+ .||=.|.+ +.++-|.|--. ++.|-++
T Consensus 280 SIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl---dGFdsrgD--------vKvimATnrie---~LDPaLiRPG 345 (440)
T KOG0726|consen 280 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL---DGFDSRGD--------VKVIMATNRIE---TLDPALIRPG 345 (440)
T ss_pred ceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc---cCccccCC--------eEEEEeccccc---ccCHhhcCCC
Confidence 59999999887777776543 45777776 56555544 44444444221 2333332
Q ss_pred ccccceeccCCCHHHHHHHHH
Q psy12680 1489 RHFNQIVINKFDDDTMVTIFS 1509 (2567)
Q Consensus 1489 r~f~vi~i~~p~~~sL~~If~ 1509 (2567)
|.=.-|-++.|+..+-.+||.
T Consensus 346 rIDrKIef~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 346 RIDRKIEFPLPDEKTKKKIFQ 366 (440)
T ss_pred ccccccccCCCchhhhceeEE
Confidence 233346678899999999986
No 168
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.014 Score=78.19 Aligned_cols=158 Identities=15% Similarity=0.219 Sum_probs=94.9
Q ss_pred HHHHHhcCC---CcccccCCCCcccceeehhhhhhcccc-----ccccch---hhhhhhhhc-cccccceeeccccccCH
Q psy12680 1327 MKLLVTHQK---PVMFIGPTGTGKSCYITVSILFIKNNS-----RLRSGF---QHFLLKELS-IEQWQPLIMNFSAQTSA 1394 (2567)
Q Consensus 1327 l~~ll~~~~---pvll~GptGTGKT~~i~~~~~~~~~~~-----~l~~~~---~~~ll~~l~-~~~~~~~~lnfSa~Tts 1394 (2567)
+..++..++ ..||+||.|+|||++.+..-..+.-.+ ...... -... ..+. ......+.|+-++.+.-
T Consensus 28 L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC-~~I~aG~hpDviEIdAas~~gV 106 (700)
T PRK12323 28 LTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRAC-TEIDAGRFVDYIEMDAASNRGV 106 (700)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHH-HHHHcCCCCcceEecccccCCH
Confidence 344454443 469999999999998875322221100 000000 0000 0000 11123556676667777
Q ss_pred HHHHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeec
Q psy12680 1395 NQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAM 1474 (2567)
Q Consensus 1395 ~~~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am 1474 (2567)
+++.++++.- .|.|..|++-|++||+++|-..+. ...||+-+=+.- .++.||.++
T Consensus 107 DdIReLie~~-------~~~P~~gr~KViIIDEah~Ls~~A-----aNALLKTLEEPP-------------~~v~FILaT 161 (700)
T PRK12323 107 DEMAQLLDKA-------VYAPTAGRFKVYMIDEVHMLTNHA-----FNAMLKTLEEPP-------------EHVKFILAT 161 (700)
T ss_pred HHHHHHHHHH-------HhchhcCCceEEEEEChHhcCHHH-----HHHHHHhhccCC-------------CCceEEEEe
Confidence 7788777542 355667888899999999865543 346776543311 245667666
Q ss_pred CCCCCCCCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1475 GPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1475 ~Ppggg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+-+ ..+.+.+++.+.++.+..++.+.+......|+.
T Consensus 162 tep---~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 162 TDP---QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred CCh---HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHH
Confidence 543 246677788888889999999998888877764
No 169
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.94 E-value=0.027 Score=71.51 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=79.6
Q ss_pred CCCCCCCCchhHHHHHHHHhc-----CeEEEEeCCCCccHHHHHHhhhhhhhcC-------ccccccccccCCchhHHHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVA-----KLCIVFNCSDSMDYIGLGKFFKGLIATG-------AWACFDEFNRIDVEVLSVV 72 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG-----~~~~vfNCs~~~d~~~m~rif~Gl~q~G-------aW~CFDEfNri~~~vLSvv 72 (2567)
..||.|||||.+++.+++.+. ..++.+||++......+...+..++... -..++||+..+..+....+
T Consensus 43 l~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L 122 (319)
T PRK00440 43 FAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQAL 122 (319)
T ss_pred EECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHH
Confidence 379999999999999999873 3578889998887777666666665432 2788999999987655443
Q ss_pred HHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 73 AQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 73 aqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
-..+. .. .+++.+.++.|. +..+++.|++-+..+.+-.|+..-|..++.
T Consensus 123 ~~~le-------~~-------------~~~~~lIl~~~~----~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~ 171 (319)
T PRK00440 123 RRTME-------MY-------------SQNTRFILSCNY----SSKIIDPIQSRCAVFRFSPLKKEAVAERLR 171 (319)
T ss_pred HHHHh-------cC-------------CCCCeEEEEeCC----ccccchhHHHHhheeeeCCCCHHHHHHHHH
Confidence 33221 11 122233334442 346777788877778888888776666643
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.93 E-value=0.003 Score=68.80 Aligned_cols=20 Identities=25% Similarity=0.679 Sum_probs=17.1
Q ss_pred CCCcccccCCCCcccceeeh
Q psy12680 1334 QKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~ 1353 (2567)
+..++++||+|||||++++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 46789999999999988754
No 171
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.017 Score=77.51 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=90.6
Q ss_pred HHHHHhcCC---CcccccCCCCcccceeehhhhhhccccc-cccch--hhhhhhhhc-cccccceeeccccccCHHHHHH
Q psy12680 1327 MKLLVTHQK---PVMFIGPTGTGKSCYITVSILFIKNNSR-LRSGF--QHFLLKELS-IEQWQPLIMNFSAQTSANQTQD 1399 (2567)
Q Consensus 1327 l~~ll~~~~---pvll~GptGTGKT~~i~~~~~~~~~~~~-l~~~~--~~~ll~~l~-~~~~~~~~lnfSa~Tts~~~q~ 1399 (2567)
+..++.+++ ..||+||+|+|||++++..-..+ ++.. ..... ..---+.++ .....++.++-++.+.-..+.+
T Consensus 27 L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIRe 105 (702)
T PRK14960 27 LSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRE 105 (702)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHH
Confidence 445555553 56999999999999886422211 1100 00000 000000011 1122345566666677777777
Q ss_pred HHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1400 IIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1400 ~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
+++. ..|.|..|++-|++||+++|-..+. ...||+ .++.-- ..+.|+.+++-+.
T Consensus 106 li~~-------~~y~P~~gk~KV~IIDEVh~LS~~A-----~NALLK-tLEEPP------------~~v~FILaTtd~~- 159 (702)
T PRK14960 106 LLDN-------VPYAPTQGRFKVYLIDEVHMLSTHS-----FNALLK-TLEEPP------------EHVKFLFATTDPQ- 159 (702)
T ss_pred HHHH-------HhhhhhcCCcEEEEEechHhcCHHH-----HHHHHH-HHhcCC------------CCcEEEEEECChH-
Confidence 6643 2356777888899999999865542 223444 444311 1244565554332
Q ss_pred CCCCCcchhccccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1480 GNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1480 g~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.+.+-+++.+.++.+..++.+.+......|+..
T Consensus 160 --kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 160 --KLPITVISRCLQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred --hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH
Confidence 244556677788889999999998888777643
No 172
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.003 Score=85.19 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=50.7
Q ss_pred CcEEEEEEcCCCCccccccCC-CC-hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcccccee
Q psy12680 1418 GKRCVVFVDDVNMPLKEEFGA-QP-PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIV 1495 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d~yGt-Q~-~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~vi~ 1495 (2567)
..-||+|+|++.--....-++ .- -...+-|++.. .|. .-...++..++|.|.|-...+..-|-.|.=.+++
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~---~d~----~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~ 406 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTE---LDG----IEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIY 406 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHH---hcC----CCccCceEEEecCCCccccCHhhcccCccceEee
Confidence 456999999976433322111 00 02334444331 121 1123457789999988665332222233344578
Q ss_pred ccCCCHHHHHHHHHHHHH
Q psy12680 1496 INKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1496 i~~p~~~sL~~If~~il~ 1513 (2567)
++.|+...-..||...+.
T Consensus 407 v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 407 VPLPDLEERLEIFKIHLR 424 (494)
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 899999999999987653
No 173
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.83 E-value=0.08 Score=67.56 Aligned_cols=172 Identities=16% Similarity=0.174 Sum_probs=93.8
Q ss_pred eeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc
Q psy12680 1313 IIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT 1392 (2567)
Q Consensus 1313 ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T 1392 (2567)
++-..+...+....+..+...+.||+++|++||||+.+.+..... .+...--.+.+||++.+
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~------------------s~r~~~pfv~v~c~~~~ 69 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL------------------SSRWQGPFISLNCAALN 69 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh------------------CCccCCCeEEEeCCCCC
Confidence 333445556667778888899999999999999999888643211 01112246789999865
Q ss_pred CHHHHHHHHHhhh-------hcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeee
Q psy12680 1393 SANQTQDIIMSKL-------DKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKL 1465 (2567)
Q Consensus 1393 ts~~~q~~ies~l-------ekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i 1465 (2567)
. ..+...+.+.- ..++.+.+-. ...-++|+||+..=.. ...+-|..+++.+.+..........
T Consensus 70 ~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~--a~gGtL~l~~i~~L~~------~~Q~~L~~~l~~~~~~~~g~~~~~~- 139 (326)
T PRK11608 70 E-NLLDSELFGHEAGAFTGAQKRHPGRFER--ADGGTLFLDELATAPM------LVQEKLLRVIEYGELERVGGSQPLQ- 139 (326)
T ss_pred H-HHHHHHHccccccccCCcccccCCchhc--cCCCeEEeCChhhCCH------HHHHHHHHHHhcCcEEeCCCCceee-
Confidence 2 33333332210 0011111111 1224688888753211 2334556666665433211111111
Q ss_pred eeeeeeeecCCCC----CCCCCCcchhccccceeccCCCH----HHHHHHHHHHH
Q psy12680 1466 IEIQLMCAMGPPS----TGNTVTPRFSRHFNQIVINKFDD----DTMVTIFSKIL 1512 (2567)
Q Consensus 1466 ~diq~v~am~Ppg----gg~~is~Rf~r~f~vi~i~~p~~----~sL~~If~~il 1512 (2567)
.|+.+|++++.+- ..+...+.|..+|+++.+.-|+- +.+..++..++
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl 194 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFA 194 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHH
Confidence 4788899887653 12446677888887766555543 23444444444
No 174
>PRK02224 chromosome segregation protein; Provisional
Probab=95.83 E-value=11 Score=55.28 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12680 2331 YDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGK 2410 (2567)
Q Consensus 2331 Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~ 2410 (2567)
-.+..+.+..++.+++++++.+.....+++..+..+..+++++..|+.++++..++++.++.+......++.....=++.
T Consensus 504 ~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (880)
T PRK02224 504 LVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAE 583 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33335556666777777777777778888888888888999999999999999998999999999988899999999999
Q ss_pred hhhhhccHHHHHHHHHHHhhcchhHHH
Q psy12680 2411 LGGEKERWSSTAKMLNEKYYQLTGDVL 2437 (2567)
Q Consensus 2411 L~~Ek~RW~~~~~~l~~~~~~l~GD~l 2437 (2567)
|..+..+=. .+..+..++..+-.+.-
T Consensus 584 l~~~~~~le-~~~~~~~~i~~~~~~~~ 609 (880)
T PRK02224 584 LKERIESLE-RIRTLLAAIADAEDEIE 609 (880)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999998888 68888888886655554
No 175
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.017 Score=78.14 Aligned_cols=158 Identities=15% Similarity=0.211 Sum_probs=87.4
Q ss_pred HHHHHhcCC---CcccccCCCCcccceeehhhhhhccccccc-cch--hhhhhhhhccc-cccceeeccccccCHHHHHH
Q psy12680 1327 MKLLVTHQK---PVMFIGPTGTGKSCYITVSILFIKNNSRLR-SGF--QHFLLKELSIE-QWQPLIMNFSAQTSANQTQD 1399 (2567)
Q Consensus 1327 l~~ll~~~~---pvll~GptGTGKT~~i~~~~~~~~~~~~l~-~~~--~~~ll~~l~~~-~~~~~~lnfSa~Tts~~~q~ 1399 (2567)
|..++..++ .+||+||+|+|||++++.....+ ++..-. ... ..---+.+... ...++.++=++.+.-..+.+
T Consensus 28 L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRe 106 (709)
T PRK08691 28 LQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-NCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIRE 106 (709)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHH
Confidence 344455443 47999999999998886422211 111000 000 00000001111 12334455455666667777
Q ss_pred HHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1400 IIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1400 ~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
+++.. .|.|..|++-||+|||+.+-..+ ....||+.+-+.- ..+.||.+++-+.
T Consensus 107 lle~a-------~~~P~~gk~KVIIIDEad~Ls~~-----A~NALLKtLEEPp-------------~~v~fILaTtd~~- 160 (709)
T PRK08691 107 VLENA-------QYAPTAGKYKVYIIDEVHMLSKS-----AFNAMLKTLEEPP-------------EHVKFILATTDPH- 160 (709)
T ss_pred HHHHH-------HhhhhhCCcEEEEEECccccCHH-----HHHHHHHHHHhCC-------------CCcEEEEEeCCcc-
Confidence 76531 25577778889999998774432 2234565554321 1245666654332
Q ss_pred CCCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1480 GNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1480 g~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+.+++.+..|.+..++.+.+......++.
T Consensus 161 --kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 161 --KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred --ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 34455566677788889999999888887764
No 176
>KOG0731|consensus
Probab=95.82 E-value=0.01 Score=80.20 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCCcccccc-----CCCChHH-HHHHH-hhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcc
Q psy12680 1418 GKRCVVFVDDVNMPLKEEF-----GAQPPIE-ILRQW-LDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRH 1490 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d~y-----GtQ~~ie-lLRQl-id~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~ 1490 (2567)
..-||||+|+|.-+..-.- |.|+=-| .|-|| .+.-||-- . .++.++|++|-|..--.-.-|.-|.
T Consensus 402 ~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~-------~-~~vi~~a~tnr~d~ld~allrpGRf 473 (774)
T KOG0731|consen 402 NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET-------S-KGVIVLAATNRPDILDPALLRPGRF 473 (774)
T ss_pred cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC-------C-CcEEEEeccCCccccCHHhcCCCcc
Confidence 4569999999999887663 3333322 34454 45555532 1 4577899999887654333344444
Q ss_pred ccceeccCCCHHHHHHHHHHH
Q psy12680 1491 FNQIVINKFDDDTMVTIFSKI 1511 (2567)
Q Consensus 1491 f~vi~i~~p~~~sL~~If~~i 1511 (2567)
=+.+.++.|+-..=..||..-
T Consensus 474 dr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 474 DRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred ccceeccCCchhhhHHHHHHH
Confidence 445677999988888888653
No 177
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.79 E-value=0.024 Score=75.30 Aligned_cols=63 Identities=25% Similarity=0.317 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCchhHHHHHHHHhcCe--------EEEEeCCCCc--------cHHHHHHhhhhhhh-----cCccccccc
Q psy12680 2 GGAPEGPAGTGKTETTKDLAKAVAKL--------CIVFNCSDSM--------DYIGLGKFFKGLIA-----TGAWACFDE 60 (2567)
Q Consensus 2 GGap~GPaGTGKTEtvK~Lak~lG~~--------~~vfNCs~~~--------d~~~m~rif~Gl~q-----~GaW~CFDE 60 (2567)
|--.+||+|||||.++|.+|+.|+.+ ++.+||+..- ..+.+..+|.-+.. ..+=..|||
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDE 297 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDE 297 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEeh
Confidence 33458999999999999999999876 5566776321 12344555654432 245678999
Q ss_pred cccC
Q psy12680 61 FNRI 64 (2567)
Q Consensus 61 fNri 64 (2567)
++.|
T Consensus 298 iD~L 301 (512)
T TIGR03689 298 MDSI 301 (512)
T ss_pred hhhh
Confidence 9977
No 178
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.78 E-value=0.031 Score=75.68 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=88.3
Q ss_pred eCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHH
Q psy12680 1316 TTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSAN 1395 (2567)
Q Consensus 1316 pT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~ 1395 (2567)
..+-..+....+..+...+.||+++|++|||||.+.+..... .....--.+.+||++.+.
T Consensus 192 ~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~------------------s~r~~~p~v~v~c~~~~~-- 251 (509)
T PRK05022 192 QSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA------------------SPRADKPLVYLNCAALPE-- 251 (509)
T ss_pred cCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh------------------CCcCCCCeEEEEcccCCh--
Confidence 344455566667778889999999999999999888653211 111223567899998763
Q ss_pred HHHHHHHhhhhcccCCcc-CCC--------CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeee
Q psy12680 1396 QTQDIIMSKLDKRRKGVY-GPP--------LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLI 1466 (2567)
Q Consensus 1396 ~~q~~ies~lekr~~~~~-gp~--------~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~ 1466 (2567)
..+++.|--..++.| |.. ....-++|+|+|..=.. ....-|.++++.+.+........ .-.
T Consensus 252 ---~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~------~~Q~~Ll~~l~~~~~~~~g~~~~-~~~ 321 (509)
T PRK05022 252 ---SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL------ALQAKLLRVLQYGEIQRVGSDRS-LRV 321 (509)
T ss_pred ---HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH------HHHHHHHHHHhcCCEeeCCCCcc-eec
Confidence 244544432222222 111 12223578888764221 22334455666555543222211 125
Q ss_pred eeeeeeecCCCCC----CCCCCcchhccccceeccCCC
Q psy12680 1467 EIQLMCAMGPPST----GNTVTPRFSRHFNQIVINKFD 1500 (2567)
Q Consensus 1467 diq~v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p~ 1500 (2567)
|+.++++.+.+-. .+...++|...++++.+.-|+
T Consensus 322 ~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPp 359 (509)
T PRK05022 322 DVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPP 359 (509)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCC
Confidence 7889999886531 134566777777776655554
No 179
>KOG1029|consensus
Probab=95.78 E-value=1.6 Score=57.99 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHH
Q psy12680 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSS 2420 (2567)
Q Consensus 2341 k~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~ 2420 (2567)
+..+..+++.+|+..+.+++++..+|.+++..+..-+...+......+.-..++...++|+.--+.-+..|.-|+.-|.+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34556666667777777777777777777766666666666666666666666666667777777777778889999998
Q ss_pred HHHHHHHHhhcchh-HHHHHHHHH
Q psy12680 2421 TAKMLNEKYYQLTG-DVLIAAGVV 2443 (2567)
Q Consensus 2421 ~~~~l~~~~~~l~G-D~llaaa~i 2443 (2567)
++..-+....--.+ -+.|-|++.
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~ 538 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARR 538 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHH
Confidence 88887776666555 556666653
No 180
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.78 E-value=0.0091 Score=70.28 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=49.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQI 76 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi 76 (2567)
.||+|+|||....-+|+.+|..+..++-..--....+..++..+ .-|-..-.||++|++..+--++-..+
T Consensus 56 ~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l-~~~~ILFIDEIHRlnk~~qe~Llpam 125 (233)
T PF05496_consen 56 YGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNL-KEGDILFIDEIHRLNKAQQEILLPAM 125 (233)
T ss_dssp ESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT---TT-EEEECTCCC--HHHHHHHHHHH
T ss_pred ECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhc-CCCcEEEEechhhccHHHHHHHHHHh
Confidence 69999999999999999999999999975433456677777776 45888999999999986544444333
No 181
>KOG0161|consensus
Probab=95.78 E-value=10 Score=57.65 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2106 SQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIV 2146 (2567)
Q Consensus 2106 ~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a~~~ 2146 (2567)
+.+..++.+-.+++.+|..+..+...+..+++.+++.+...
T Consensus 1055 e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l 1095 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQL 1095 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344444444444555555555555555555554444333
No 182
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.77 E-value=0.018 Score=75.75 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=30.8
Q ss_pred eeeecCCCCCCCCCCcchhcccc---ceeccCCCHHHHHHHHHHHHHh
Q psy12680 1470 LMCAMGPPSTGNTVTPRFSRHFN---QIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1470 ~v~am~Ppggg~~is~Rf~r~f~---vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
++++-.+|..=..+.+|+.+.|. ++.++.|+.+....|....+..
T Consensus 236 iits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 236 VLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred EEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 34444555443346677776664 5788999999999998876644
No 183
>PRK13808 adenylate kinase; Provisional
Probab=95.75 E-value=0.015 Score=73.09 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=60.1
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEE-----EEeccCCCCcCcccccccCCCCCCC-cchHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEI-----IVINPKSITMGQLYGQFDAVSHEWS-DGILAVSYRQF 441 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~-----~~inPKait~~eLyG~~d~~T~EW~-DGvls~i~R~~ 441 (2567)
|+|+|||||||||.-+.|++.+... .+.+ ..|++.+-.-.++-..+ ..++|. |-++..++.+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~---------~is~gdlLR~~i~~~s~~g~~~~~~~--~~G~lVPdeiv~~li~e~ 71 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV---------QLSTGDMLRAAVAAGTPVGLKAKDIM--ASGGLVPDEVVVGIISDR 71 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc---------eecccHHHHHHhhcCChhhHHHHHHH--HcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998876321 0000 00111111100111111 123332 44666666654
Q ss_pred HhcCCCCceEEEeCC-CCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecC
Q psy12680 442 AMSQNENRKWLIFDG-PVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQ 497 (2567)
Q Consensus 442 ~~~~~~~~~WivfDG-pVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~ 497 (2567)
........-| |+|| |-...-+|.|+..|-++. +.+.+-|+|+++
T Consensus 72 l~~~~~~~G~-ILDGFPRt~~QA~~L~~ll~~~g-----------i~PDlVI~LDVp 116 (333)
T PRK13808 72 IEQPDAANGF-ILDGFPRTVPQAEALDALLKDKQ-----------LKLDAVVELRVN 116 (333)
T ss_pred HhcccccCCE-EEeCCCCCHHHHHHHHHHHHhcC-----------CCcCeEEEEECC
Confidence 4433334456 6799 778888998888774432 456666777664
No 184
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.74 E-value=2.8 Score=57.90 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHH
Q psy12680 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSS 2420 (2567)
Q Consensus 2341 k~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~ 2420 (2567)
.+.+.+++..++.+.+..+...++.+..+..+...|+.+.++...+..+++.++..++.+++.+..-+..+..|+.+|..
T Consensus 328 ~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~ 407 (562)
T PHA02562 328 IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGI 407 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555555555555556666666777777777777777777777777755
No 185
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.74 E-value=0.026 Score=68.14 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=50.3
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQIL 77 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~ 77 (2567)
..||+|||||..++.+++.+ |+.++.++|.+..+.. .....+...++||+.+++.+....+...+.
T Consensus 47 l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~liiDdi~~l~~~~~~~L~~~~~ 115 (227)
T PRK08903 47 LWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF-------DFDPEAELYAVDDVERLDDAQQIALFNLFN 115 (227)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH-------hhcccCCEEEEeChhhcCchHHHHHHHHHH
Confidence 46999999999999999875 8899999998754321 223456789999999998876555544443
No 186
>PLN03025 replication factor C subunit; Provisional
Probab=95.71 E-value=0.047 Score=69.52 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=68.1
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHh
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAM 443 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~ 443 (2567)
..| +++.||||+||||+.+.+++++.- . + .......+|+. .+-.-+++-.+++..+.
T Consensus 34 ~~~-lll~Gp~G~GKTtla~~la~~l~~-----~-~-~~~~~~eln~s---------------d~~~~~~vr~~i~~~~~ 90 (319)
T PLN03025 34 MPN-LILSGPPGTGKTTSILALAHELLG-----P-N-YKEAVLELNAS---------------DDRGIDVVRNKIKMFAQ 90 (319)
T ss_pred Cce-EEEECCCCCCHHHHHHHHHHHHhc-----c-c-Cccceeeeccc---------------ccccHHHHHHHHHHHHh
Confidence 345 889999999999999999998731 1 0 01111223331 11111234444444443
Q ss_pred cC----CCCceEEEeCCCCCHHH---HHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEec
Q psy12680 444 SQ----NENRKWLIFDGPVDAIW---IENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYME 516 (2567)
Q Consensus 444 ~~----~~~~~WivfDGpVDa~W---IEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~~ 516 (2567)
.. ....+-|++| .+|..= -+.|...|+ ..+++++|+|=..+.....|+-.|||-++.|.
T Consensus 91 ~~~~~~~~~~kviiiD-E~d~lt~~aq~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 91 KKVTLPPGRHKIVILD-EADSMTSGAQQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred ccccCCCCCeEEEEEe-chhhcCHHHHHHHHHHHh-------------cccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 32 2346788887 344332 222333332 12456778887777777789999999988887
Q ss_pred C
Q psy12680 517 P 517 (2567)
Q Consensus 517 ~ 517 (2567)
+
T Consensus 157 ~ 157 (319)
T PLN03025 157 R 157 (319)
T ss_pred C
Confidence 5
No 187
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.037 Score=75.07 Aligned_cols=130 Identities=20% Similarity=0.287 Sum_probs=80.0
Q ss_pred HHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc--C----------CccEEEEEeccCCCCcCcccccccCCCC
Q psy12680 360 EMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL--G----------EHKVEIIVINPKSITMGQLYGQFDAVSH 427 (2567)
Q Consensus 360 e~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~--~----------~~~v~~~~inPKait~~eLyG~~d~~T~ 427 (2567)
+.-++.|.+++.||+|+||||+.+.|+++|.--...... | +....++.| |..++
T Consensus 33 ~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI--------------DAas~ 98 (830)
T PRK07003 33 DGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM--------------DAASN 98 (830)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe--------------ccccc
Confidence 333468999999999999999999999998521000000 0 001122222 22221
Q ss_pred CCCcch--HHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCc
Q psy12680 428 EWSDGI--LAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASP 504 (2567)
Q Consensus 428 EW~DGv--ls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASP 504 (2567)
.|| +-.+++...... ....|.||+|- +|-.=-+..|.+|. + |- .-|++++|||=+.+.....|
T Consensus 99 ---rgVDdIReLIe~a~~~P~~gr~KVIIIDE-ah~LT~~A~NALLK---t--LE-----EPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 99 ---RGVDEMAALLERAVYAPVDARFKVYMIDE-VHMLTNHAFNAMLK---T--LE-----EPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred ---ccHHHHHHHHHHHHhccccCCceEEEEeC-hhhCCHHHHHHHHH---H--HH-----hcCCCeEEEEEECChhhccc
Confidence 233 333444433222 23568899985 55554455666652 1 11 02568999999999999988
Q ss_pred ceeeeceeEEecC
Q psy12680 505 ATVSRCGMIYMEP 517 (2567)
Q Consensus 505 ATVSRcGmVy~~~ 517 (2567)
.-.|||=.+.|.+
T Consensus 165 TIrSRCq~f~Fk~ 177 (830)
T PRK07003 165 TVLSRCLQFNLKQ 177 (830)
T ss_pred hhhhheEEEecCC
Confidence 8899999988875
No 188
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.70 E-value=0.024 Score=66.92 Aligned_cols=128 Identities=20% Similarity=0.348 Sum_probs=67.8
Q ss_pred CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc--cCHHHHHHHHHhhhhcccCCcc
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ--TSANQTQDIIMSKLDKRRKGVY 1413 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~--Tts~~~q~~ies~lekr~~~~~ 1413 (2567)
+++|.||||+|||++... +.+++... ...+|+. ..+..+..++.+
T Consensus 52 h~lf~GPPG~GKTTLA~I------------------IA~e~~~~-----~~~~sg~~i~k~~dl~~il~~---------- 98 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI------------------IANELGVN-----FKITSGPAIEKAGDLAAILTN---------- 98 (233)
T ss_dssp EEEEESSTTSSHHHHHHH------------------HHHHCT-------EEEEECCC--SCHHHHHHHHT----------
T ss_pred eEEEECCCccchhHHHHH------------------HHhccCCC-----eEeccchhhhhHHHHHHHHHh----------
Confidence 689999999999987642 22222211 1124442 233445554422
Q ss_pred CCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhccccccc---Cc----ceeeeeeeeeeeeecCCCCCCCCCCcc
Q psy12680 1414 GPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDR---KD----VVAVKLIEIQLMCAMGPPSTGNTVTPR 1486 (2567)
Q Consensus 1414 gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr---~~----~~~~~i~diq~v~am~Ppggg~~is~R 1486 (2567)
.+++-|+|||+|+-=.+. ..|.|=..+|.+ .-|- +. ..-.++..-++++|-.-. +-+++=
T Consensus 99 ---l~~~~ILFIDEIHRlnk~------~qe~LlpamEd~-~idiiiG~g~~ar~~~~~l~~FTligATTr~---g~ls~p 165 (233)
T PF05496_consen 99 ---LKEGDILFIDEIHRLNKA------QQEILLPAMEDG-KIDIIIGKGPNARSIRINLPPFTLIGATTRA---GLLSSP 165 (233)
T ss_dssp -----TT-EEEECTCCC--HH------HHHHHHHHHHCS-EEEEEBSSSSS-BEEEEE----EEEEEESSG---CCTSHC
T ss_pred ---cCCCcEEEEechhhccHH------HHHHHHHHhccC-eEEEEeccccccceeeccCCCceEeeeeccc---cccchh
Confidence 234569999999964433 346777777753 3321 11 122344567777776544 345555
Q ss_pred hhccccce-eccCCCHHHHHHHHH
Q psy12680 1487 FSRHFNQI-VINKFDDDTMVTIFS 1509 (2567)
Q Consensus 1487 f~r~f~vi-~i~~p~~~sL~~If~ 1509 (2567)
|...|.++ .+.+.+.+.|..|..
T Consensus 166 LrdRFgi~~~l~~Y~~~el~~Iv~ 189 (233)
T PF05496_consen 166 LRDRFGIVLRLEFYSEEELAKIVK 189 (233)
T ss_dssp CCTTSSEEEE----THHHHHHHHH
T ss_pred HHhhcceecchhcCCHHHHHHHHH
Confidence 66667776 489999999999986
No 189
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.69 E-value=0.031 Score=73.70 Aligned_cols=112 Identities=22% Similarity=0.234 Sum_probs=78.1
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhh---h--cCccccccccccCCchhHHHHHHHHHhhh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLI---A--TGAWACFDEFNRIDVEVLSVVAQQILTIQ 80 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~---q--~GaW~CFDEfNri~~~vLSvvaqqi~~Iq 80 (2567)
.||+|||||.+++.+|+.++...+.+||+.. ..+.+..++.-+. + .+.-..+||++|+..+...++-..
T Consensus 42 ~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~----- 115 (413)
T PRK13342 42 WGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPH----- 115 (413)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHH-----
Confidence 6999999999999999999999999999864 4455566665542 2 345678999999986544333221
Q ss_pred hhhhcCCceEEEcCeEEEeeCceeEEE---EeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 81 RGVTLGEEEILFEGTILKLDRTCSVFI---TMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 81 ~a~~~~~~~~~f~g~~i~l~~~~~iFi---TmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+..+ .+ +|| |-||. ..+++.|.+-++.+.+-.|+..-+.+++.
T Consensus 116 --le~~--~i--------------ilI~att~n~~----~~l~~aL~SR~~~~~~~~ls~e~i~~lL~ 161 (413)
T PRK13342 116 --VEDG--TI--------------TLIGATTENPS----FEVNPALLSRAQVFELKPLSEEDIEQLLK 161 (413)
T ss_pred --hhcC--cE--------------EEEEeCCCChh----hhccHHHhccceeeEeCCCCHHHHHHHHH
Confidence 1111 11 122 33553 35778888888899999999887776643
No 190
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.68 E-value=0.021 Score=65.63 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHH
Q psy12680 1322 RNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDII 1401 (2567)
Q Consensus 1322 R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~i 1401 (2567)
+....+..+.....||+++|++||||+.+.+..... .....--++.+||++.+. +.+
T Consensus 10 ~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~------------------s~r~~~pfi~vnc~~~~~-----~~~ 66 (168)
T PF00158_consen 10 RLREQAKRAASSDLPVLITGETGTGKELLARAIHNN------------------SPRKNGPFISVNCAALPE-----ELL 66 (168)
T ss_dssp HHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC------------------STTTTS-EEEEETTTS-H-----HHH
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh------------------hhcccCCeEEEehhhhhc-----chh
Confidence 445566777788899999999999999888753321 111223467899997742 234
Q ss_pred HhhhhcccCCccCCC-C--------CcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeee
Q psy12680 1402 MSKLDKRRKGVYGPP-L--------GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMC 1472 (2567)
Q Consensus 1402 es~lekr~~~~~gp~-~--------gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~ 1472 (2567)
++.|--..++.|... . ...=++|+|+|+-=.+ ...+-|-++++.+.+....+..... .|+.+|+
T Consensus 67 e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~------~~Q~~Ll~~l~~~~~~~~g~~~~~~-~~~RiI~ 139 (168)
T PF00158_consen 67 ESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPP------ELQAKLLRVLEEGKFTRLGSDKPVP-VDVRIIA 139 (168)
T ss_dssp HHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-H------HHHHHHHHHHHHSEEECCTSSSEEE---EEEEE
T ss_pred hhhhhccccccccccccccCCceeeccceEEeecchhhhHH------HHHHHHHHHHhhchhcccccccccc-ccceEEe
Confidence 555543333332111 0 1234678888763222 2345677778877766543332222 4888888
Q ss_pred ecCCC
Q psy12680 1473 AMGPP 1477 (2567)
Q Consensus 1473 am~Pp 1477 (2567)
+.+.+
T Consensus 140 st~~~ 144 (168)
T PF00158_consen 140 STSKD 144 (168)
T ss_dssp EESS-
T ss_pred ecCcC
Confidence 87753
No 191
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.67 E-value=0.028 Score=75.02 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=86.9
Q ss_pred CCcccccCCCCcccceeehhhhhhcccccccc-ch--h-----hhhhhhhccccccceeeccccccCHHHHHHHHHhhhh
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRS-GF--Q-----HFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLD 1406 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~-~~--~-----~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~le 1406 (2567)
++.||+||+|||||++++.....+. ...... +. . .....-.+.....+..++-++.|.-..+..+++..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a-- 120 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESA-- 120 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHH--
Confidence 3689999999999998875332221 111000 00 0 00000001112234445556677788888888663
Q ss_pred cccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcc
Q psy12680 1407 KRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPR 1486 (2567)
Q Consensus 1407 kr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~R 1486 (2567)
.|.|..|++-||++||++|=... ....||+- ++.- -..+.|+.+++.+ ..+++-
T Consensus 121 -----~~~P~~~~~KVvIIDEa~~Ls~~-----a~naLLk~-LEep------------p~~~vfI~aTte~---~kI~~t 174 (507)
T PRK06645 121 -----EYKPLQGKHKIFIIDEVHMLSKG-----AFNALLKT-LEEP------------PPHIIFIFATTEV---QKIPAT 174 (507)
T ss_pred -----HhccccCCcEEEEEEChhhcCHH-----HHHHHHHH-Hhhc------------CCCEEEEEEeCCh---HHhhHH
Confidence 24577788889999998774332 22334443 3320 1134455554322 235566
Q ss_pred hhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1487 FSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1487 f~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+.+.+.++.+..++.+.+..+...+++
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHH
Confidence 677777888899999999988888774
No 192
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.64 E-value=0.017 Score=77.07 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=77.9
Q ss_pred HHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCC-----CcCcccccccCCCCCCCcchHHH
Q psy12680 362 MIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSI-----TMGQLYGQFDAVSHEWSDGILAV 436 (2567)
Q Consensus 362 ~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKai-----t~~eLyG~~d~~T~EW~DGvls~ 436 (2567)
-.+.|++++.||+|+||||+.+.+++++.-... ..++......-..+.+. ....++ ++|..++.=.|- +-.
T Consensus 40 ~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~--~~~~~~~~~C~~C~~C~~i~~~~h~Dv~-eidaas~~~vd~-Ir~ 115 (507)
T PRK06645 40 DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL--ITENTTIKTCEQCTNCISFNNHNHPDII-EIDAASKTSVDD-IRR 115 (507)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcCccc--cccCcCcCCCCCChHHHHHhcCCCCcEE-EeeccCCCCHHH-HHH
Confidence 344699999999999999999999999853210 00000000000000000 001111 223333211111 112
Q ss_pred HHHHHHhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEe
Q psy12680 437 SYRQFAMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYM 515 (2567)
Q Consensus 437 i~R~~~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~ 515 (2567)
++-.+... ....++-+|+|- +|-.--+.+|.+|.- |- .-|+++.|||=+.+.....|+-.|||..+.|
T Consensus 116 iie~a~~~P~~~~~KVvIIDE-a~~Ls~~a~naLLk~-----LE-----epp~~~vfI~aTte~~kI~~tI~SRc~~~ef 184 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDE-VHMLSKGAFNALLKT-----LE-----EPPPHIIFIFATTEVQKIPATIISRCQRYDL 184 (507)
T ss_pred HHHHHHhccccCCcEEEEEEC-hhhcCHHHHHHHHHH-----Hh-----hcCCCEEEEEEeCChHHhhHHHHhcceEEEc
Confidence 22222111 123568888887 455555666666531 11 1478899999998888888888899998888
Q ss_pred cC
Q psy12680 516 EP 517 (2567)
Q Consensus 516 ~~ 517 (2567)
.+
T Consensus 185 ~~ 186 (507)
T PRK06645 185 RR 186 (507)
T ss_pred cC
Confidence 65
No 193
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.63 E-value=0.0084 Score=79.88 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=32.2
Q ss_pred eeeecCCCCCCCCCCcchhcccc---ceeccCCCHHHHHHHHHHHHHh
Q psy12680 1470 LMCAMGPPSTGNTVTPRFSRHFN---QIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1470 ~v~am~Ppggg~~is~Rf~r~f~---vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
++++-.||..=..+.+|+.+.|. ++.+..|+.+....|....+..
T Consensus 248 iits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 248 VLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred EEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 45555566442336688877773 6788999999999999877653
No 194
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=95.58 E-value=0.019 Score=79.49 Aligned_cols=123 Identities=17% Similarity=0.245 Sum_probs=82.2
Q ss_pred CCCCCCCchhHHHHHHHHhc-------CeEEEEeCCCCccHHH-H-HH--hhhhh-h-hcCccccccccccCCchhHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVA-------KLCIVFNCSDSMDYIG-L-GK--FFKGL-I-ATGAWACFDEFNRIDVEVLSVV 72 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG-------~~~~vfNCs~~~d~~~-m-~r--if~Gl-~-q~GaW~CFDEfNri~~~vLSvv 72 (2567)
.|++|||||...|.+++.-. ++....+|+....+.. . |. +-.|+ . ..|.=+|+|||++++..+-+.+
T Consensus 498 vGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aL 577 (915)
T PTZ00111 498 CGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSL 577 (915)
T ss_pred eCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHH
Confidence 59999999999999988643 4556666765432110 0 11 11121 1 1134589999999999888777
Q ss_pred HHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCC---------CCCCchhhHhhccccccccCC
Q psy12680 73 AQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYA---------GRSELPDNLKSLFRTVAMMVP 135 (2567)
Q Consensus 73 aqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYa---------GRseLPdnLk~lFRpvam~~P 135 (2567)
.+-+ .++.-++.=.|-..+|+..|.|..|.||-+. +-..||+.|-+=|=-|-++.+
T Consensus 578 lEaM-------EqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D 642 (915)
T PTZ00111 578 YEVM-------EQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLD 642 (915)
T ss_pred HHHH-------hCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecC
Confidence 6643 3332233335888899999999999999642 346799999988866665543
No 195
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.58 E-value=24 Score=52.44 Aligned_cols=24 Identities=38% Similarity=0.293 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHH
Q psy12680 1806 WGFMIVGLSFAGKTCAYRMLSEAL 1829 (2567)
Q Consensus 1806 ~~~lLVG~~GSGK~sl~rlla~~l 1829 (2567)
|=.+++|++||||||+...+++++
T Consensus 31 ~l~~I~G~tGaGKStildai~~aL 54 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLLDAICLAL 54 (1047)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 347889999999999999988776
No 196
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=95.57 E-value=0.016 Score=77.26 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=39.2
Q ss_pred CcEEEEEEcCCCCccccccCCCChHHHHHHHhhccccc-ccCcceeeeeeeeeeeeecCCC
Q psy12680 1418 GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWY-DRKDVVAVKLIEIQLMCAMGPP 1477 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~y-dr~~~~~~~i~diq~v~am~Pp 1477 (2567)
...-++|+||++- + ....++.|||.++.+.+. .|.......-.++++++||||-
T Consensus 294 A~~GvLfLDEi~e-----~-~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npc 348 (499)
T TIGR00368 294 AHNGVLFLDELPE-----F-KRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPC 348 (499)
T ss_pred cCCCeEecCChhh-----C-CHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCc
Confidence 3457999999863 2 236789999999987663 4444444444689999999995
No 197
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.56 E-value=0.011 Score=78.06 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=45.5
Q ss_pred EEEEEcCCCCccccccCCC-ChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcccc---ceec
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQ-PPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN---QIVI 1496 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ-~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~---vi~i 1496 (2567)
-++++||+..-. ++-++| ....++..+.+.+. ..++++-.+|..-..+.+|+.+.|. ++.+
T Consensus 196 dvLlIDDi~~l~-~~~~~q~elf~~~n~l~~~~k--------------~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i 260 (440)
T PRK14088 196 DVLLIDDVQFLI-GKTGVQTELFHTFNELHDSGK--------------QIVICSDREPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_pred CEEEEechhhhc-CcHHHHHHHHHHHHHHHHcCC--------------eEEEECCCCHHHHHHHHHHHhhHHhcCceEee
Confidence 378899998532 222233 12233333333211 1233344555443345677776666 7789
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy12680 1497 NKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1497 ~~p~~~sL~~If~~il~ 1513 (2567)
..|+++....|....+.
T Consensus 261 ~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 261 EPPDEETRKKIARKMLE 277 (440)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887654
No 198
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.55 E-value=0.049 Score=67.46 Aligned_cols=168 Identities=15% Similarity=0.209 Sum_probs=89.8
Q ss_pred ceeeeCchhhHHHHHHHHHHhcCC-CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccc
Q psy12680 1312 QIIVTTEETLRNIALMKLLVTHQK-PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSA 1390 (2567)
Q Consensus 1312 ~ilVpT~dT~R~~~ll~~ll~~~~-pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa 1390 (2567)
.-+.+|....+....+...+..+. .++++||+|+|||++++... +.+....+.... .++.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~------------------~~l~~~~~~~~~-~~~~ 80 (269)
T TIGR03015 20 DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLL------------------KRLDQERVVAAK-LVNT 80 (269)
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH------------------HhcCCCCeEEee-eeCC
Confidence 456677777777777777776655 47899999999999886422 222222211111 1223
Q ss_pred ccCHHHHHHHHHhhhhcccCCc-----cC---------CCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccc
Q psy12680 1391 QTSANQTQDIIMSKLDKRRKGV-----YG---------PPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYD 1456 (2567)
Q Consensus 1391 ~Tts~~~q~~ies~lekr~~~~-----~g---------p~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~yd 1456 (2567)
..++..+...|...+.....+. +. ...|+++++++||+..... ..++.||.+.+... +
T Consensus 81 ~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~------~~~~~l~~l~~~~~--~ 152 (269)
T TIGR03015 81 RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTP------ELLEELRMLSNFQT--D 152 (269)
T ss_pred CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCH------HHHHHHHHHhCccc--C
Confidence 3344445544444432111100 00 1246788999999876432 34778888876532 1
Q ss_pred cCcceeeeeeeeeeeeecCCCCC---CCCCCcchhcc-ccceeccCCCHHHHHHHHHHHHH
Q psy12680 1457 RKDVVAVKLIEIQLMCAMGPPST---GNTVTPRFSRH-FNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1457 r~~~~~~~i~diq~v~am~Ppgg---g~~is~Rf~r~-f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.. ..++++.+-.|.-. ..+...++.++ ...+.++..+.+.+..++...+.
T Consensus 153 ~~-------~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 153 NA-------KLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred CC-------CeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence 10 11222333222111 01112233333 44667888888888887776554
No 199
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.072 Score=68.63 Aligned_cols=179 Identities=18% Similarity=0.289 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCCC--cccccCCCCcccceeehhhhhhccccccccchhhhhhhhhcc--ccccceeeccccccCHHHH
Q psy12680 1322 RNIALMKLLVTHQKP--VMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSI--EQWQPLIMNFSAQTSANQT 1397 (2567)
Q Consensus 1322 R~~~ll~~ll~~~~p--vll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~--~~~~~~~lnfSa~Tts~~~ 1397 (2567)
+....+..++.++.| +++.||||||||++++.. .+++.. .....+.+||=...|+.++
T Consensus 28 ~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v------------------~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 28 QLASFLAPALRGERPSNIIIYGPTGTGKTATVKFV------------------MEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred HHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHH------------------HHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 334446667777665 699999999999988643 233321 2233788999888888877
Q ss_pred HHHHHhhhhcc--cCC----c------cCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeee
Q psy12680 1398 QDIIMSKLDKR--RKG----V------YGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKL 1465 (2567)
Q Consensus 1398 q~~ies~lekr--~~~----~------~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i 1465 (2567)
-.-|-+++-+- .|. . .=+..++.+||-.||++.=... .| ...-+|+|-.-+. -
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~-~~-~~LY~L~r~~~~~-------------~ 154 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK-DG-EVLYSLLRAPGEN-------------K 154 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccc-cc-hHHHHHHhhcccc-------------c
Confidence 77666655310 000 0 0012478899999999853322 22 2233333322111 1
Q ss_pred eeeeeeeecCCCCCCCCCCcchhccccc--eeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHHH
Q psy12680 1466 IEIQLMCAMGPPSTGNTVTPRFSRHFNQ--IVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLV 1533 (2567)
Q Consensus 1466 ~diq~v~am~Ppggg~~is~Rf~r~f~v--i~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv 1533 (2567)
..+.+++..|-..--..+.||..+.|.- +.+++.+.+.|..|...=.+..|....+...+-.++..++
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~ 224 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALV 224 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 2233343333221123457777766655 4467777788888888777766665555555544444433
No 200
>PF05729 NACHT: NACHT domain
Probab=95.50 E-value=0.012 Score=66.89 Aligned_cols=149 Identities=15% Similarity=0.234 Sum_probs=80.3
Q ss_pred CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccc-c-ccceeeccccccCHH---HHHHHHHhhhhcccC
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIE-Q-WQPLIMNFSAQTSAN---QTQDIIMSKLDKRRK 1410 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~-~-~~~~~lnfSa~Tts~---~~q~~ies~lekr~~ 1410 (2567)
.++++|++|+|||++++...... ....... . ...+.++++...... .+.+.|...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~- 66 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL--------------AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI- 66 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH--------------HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-
Confidence 47899999999999886432111 1111111 1 122222222222221 35555544433221
Q ss_pred CccCC------CCCcEEEEEEcCCCCccccc--cCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCC
Q psy12680 1411 GVYGP------PLGKRCVVFVDDVNMPLKEE--FGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNT 1482 (2567)
Q Consensus 1411 ~~~gp------~~gK~~vvFiDDiNmP~~d~--yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~ 1482 (2567)
....+ ...+++++++|+++--..+. .+.++..++|.+|+..... .++.++.++.|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~-----------~~~~liit~r~~~~~~- 134 (166)
T PF05729_consen 67 APIEELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALP-----------PGVKLIITSRPRAFPD- 134 (166)
T ss_pred hhhHHHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccC-----------CCCeEEEEEcCChHHH-
Confidence 11111 14678889999877544422 2356788899999874221 2455666666543311
Q ss_pred CCcchhccccceeccCCCHHHHHHHHHHHH
Q psy12680 1483 VTPRFSRHFNQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1483 is~Rf~r~f~vi~i~~p~~~sL~~If~~il 1512 (2567)
..+.......+.++..+++.+...+...+
T Consensus 135 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 135 -LRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred -HHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 22333344677888888888888776544
No 201
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.47 E-value=0.024 Score=73.58 Aligned_cols=122 Identities=22% Similarity=0.215 Sum_probs=75.2
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccCC-----------
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRID----------- 65 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri~----------- 65 (2567)
...||+|||||.++|.+|+.++.+.+.+.|++-.. ...+..+|.-... ..+-.++||++.|.
T Consensus 160 LL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~ 239 (364)
T TIGR01242 160 LLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGD 239 (364)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCcc
Confidence 34899999999999999999999988888765322 1122233332211 34578999999873
Q ss_pred chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHH
Q psy12680 66 VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISE 142 (2567)
Q Consensus 66 ~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaE 142 (2567)
.++-..+.+.+..+.. .. -..++.+.+|.|.- ..||+.|.. +=|-|.+-.||..--.+
T Consensus 240 ~~~~~~l~~ll~~ld~-~~--------------~~~~v~vI~ttn~~----~~ld~al~r~grfd~~i~v~~P~~~~r~~ 300 (364)
T TIGR01242 240 REVQRTLMQLLAELDG-FD--------------PRGNVKVIAATNRP----DILDPALLRPGRFDRIIEVPLPDFEGRLE 300 (364)
T ss_pred HHHHHHHHHHHHHhhC-CC--------------CCCCEEEEEecCCh----hhCChhhcCcccCceEEEeCCcCHHHHHH
Confidence 3334444444332211 00 01245567777743 356666642 23567788999887777
Q ss_pred HH
Q psy12680 143 II 144 (2567)
Q Consensus 143 i~ 144 (2567)
|+
T Consensus 301 Il 302 (364)
T TIGR01242 301 IL 302 (364)
T ss_pred HH
Confidence 74
No 202
>smart00350 MCM minichromosome maintenance proteins.
Probab=95.47 E-value=0.034 Score=75.07 Aligned_cols=91 Identities=10% Similarity=0.156 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeee-eeeeeeeecCCCCCCC----------CCCcchh
Q psy12680 1420 RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKL-IEIQLMCAMGPPSTGN----------TVTPRFS 1488 (2567)
Q Consensus 1420 ~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i-~diq~v~am~Ppggg~----------~is~Rf~ 1488 (2567)
.-++++||+|--..+ ....|.+.++.+..-=.+...-..+ .++.++||+||-.|.. .+++-++
T Consensus 301 ~Gil~iDEi~~l~~~------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lL 374 (509)
T smart00350 301 NGVCCIDEFDKMDDS------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPIL 374 (509)
T ss_pred CCEEEEechhhCCHH------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHh
Confidence 348899999853222 2344555666443210011112223 4789999999987632 5777888
Q ss_pred cccccee--ccCCCHHHHHHHHHHHHHhhh
Q psy12680 1489 RHFNQIV--INKFDDDTMVTIFSKILLWHL 1516 (2567)
Q Consensus 1489 r~f~vi~--i~~p~~~sL~~If~~il~~~l 1516 (2567)
+.|-++. .++|+.+.=..|-..++..|-
T Consensus 375 sRFdLi~~~~d~~~~~~d~~i~~~i~~~~~ 404 (509)
T smart00350 375 SRFDLLFVVLDEVDEERDRELAKHVVDLHR 404 (509)
T ss_pred CceeeEEEecCCCChHHHHHHHHHHHHhhc
Confidence 8886543 478888888888887776553
No 203
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.028 Score=75.43 Aligned_cols=132 Identities=18% Similarity=0.241 Sum_probs=78.3
Q ss_pred HHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc--C----------CccEEEEEeccCCCCcCcccccccCC
Q psy12680 358 IYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL--G----------EHKVEIIVINPKSITMGQLYGQFDAV 425 (2567)
Q Consensus 358 Lye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~--~----------~~~v~~~~inPKait~~eLyG~~d~~ 425 (2567)
.++.-.+.|++++.||+|+||||+.+.|++++.--...... + +....++.+|..
T Consensus 31 ~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa-------------- 96 (546)
T PRK14957 31 ALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA-------------- 96 (546)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc--------------
Confidence 33344568999999999999999999999988421000000 0 001112222221
Q ss_pred CCCCCcch--HHHHHHHHHhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcC
Q psy12680 426 SHEWSDGI--LAVSYRQFAMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVA 502 (2567)
Q Consensus 426 T~EW~DGv--ls~i~R~~~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~A 502 (2567)
++ -|+ +-.++..+... ....++-+|+|- +|..-.+..|.+|. +|- + .|+++.|||=+.|....
T Consensus 97 s~---~gvd~ir~ii~~~~~~p~~g~~kViIIDE-a~~ls~~a~naLLK---~LE--e-----pp~~v~fIL~Ttd~~ki 162 (546)
T PRK14957 97 SR---TGVEETKEILDNIQYMPSQGRYKVYLIDE-VHMLSKQSFNALLK---TLE--E-----PPEYVKFILATTDYHKI 162 (546)
T ss_pred cc---cCHHHHHHHHHHHHhhhhcCCcEEEEEec-hhhccHHHHHHHHH---HHh--c-----CCCCceEEEEECChhhh
Confidence 11 122 11222222222 234568888887 56666666666662 111 1 36789999999998777
Q ss_pred CcceeeeceeEEecC
Q psy12680 503 SPATVSRCGMIYMEP 517 (2567)
Q Consensus 503 SPATVSRcGmVy~~~ 517 (2567)
-|+-.|||=++.|.+
T Consensus 163 l~tI~SRc~~~~f~~ 177 (546)
T PRK14957 163 PVTILSRCIQLHLKH 177 (546)
T ss_pred hhhHHHheeeEEeCC
Confidence 767799999999976
No 204
>PRK06620 hypothetical protein; Validated
Probab=95.44 E-value=0.045 Score=65.52 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=31.1
Q ss_pred eeeeecCCCCCCCCCCcchhcccc---ceeccCCCHHHHHHHHHHHH
Q psy12680 1469 QLMCAMGPPSTGNTVTPRFSRHFN---QIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1469 q~v~am~Ppggg~~is~Rf~r~f~---vi~i~~p~~~sL~~If~~il 1512 (2567)
.++++..||. .-.+ |++.+.+. ++.+..|+++.+..+.....
T Consensus 116 ilits~~~p~-~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 116 LLLTSSDKSR-NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred EEEEcCCCcc-ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 3556665665 3346 89998888 89999999999887776544
No 205
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.42 E-value=0.027 Score=71.39 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=48.8
Q ss_pred EEEEEcCCCCccccccCCCChHHHHHHHhhcccc-cccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccccc-eeccC
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMW-YDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQ-IVINK 1498 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~-ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~v-i~i~~ 1498 (2567)
-++|+||+|.-.. ...+.|++.++.+-. +.+.......=.++.+++++||..+ .+.+.++..|.. +.+++
T Consensus 130 GiL~lDEInrl~~------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~--~l~~aLldRF~~~v~v~~ 201 (334)
T PRK13407 130 GYLYIDEVNLLED------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG--ELRPQLLDRFGLSVEVRS 201 (334)
T ss_pred CeEEecChHhCCH------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccC--CCCHHHHhhcceEEEcCC
Confidence 3899999996432 356778888876543 2222222222246788899998643 366677777764 45666
Q ss_pred CCH-HHHHHHH
Q psy12680 1499 FDD-DTMVTIF 1508 (2567)
Q Consensus 1499 p~~-~sL~~If 1508 (2567)
|.. +.-..|.
T Consensus 202 ~~~~~e~~~il 212 (334)
T PRK13407 202 PRDVETRVEVI 212 (334)
T ss_pred CCcHHHHHHHH
Confidence 665 4433344
No 206
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.42 E-value=0.058 Score=73.07 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=87.8
Q ss_pred CCcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecc
Q psy12680 1309 PVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNF 1388 (2567)
Q Consensus 1309 ~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnf 1388 (2567)
.|.+++-..+..-+....+..+...+.|++++|++||||+.+.+++.... ....--++.+||
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s------------------~r~~~pfv~inc 263 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS------------------PRGKKPFLALNC 263 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC------------------CCCCCCeEEecc
Confidence 34445544444455666677778899999999999999999887542110 111223578999
Q ss_pred ccccCHHHHHHHHHhhhhcccCCccC-C----C----CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCc
Q psy12680 1389 SAQTSANQTQDIIMSKLDKRRKGVYG-P----P----LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKD 1459 (2567)
Q Consensus 1389 Sa~Tts~~~q~~ies~lekr~~~~~g-p----~----~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~ 1459 (2567)
++.+. +.+++-+--...+.|. + + ....-.+|+|++.-=.. ....-|.+++..+-|.....
T Consensus 264 a~~~~-----~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~------~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 264 ASIPD-----DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP------RMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred ccCCH-----HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH------HHHHHHHHHHhcCCcccCCC
Confidence 88662 3344443322111111 0 0 01234678998763211 12234455666554433221
Q ss_pred ceeeeeeeeeeeeecCCCC----CCCCCCcchhccccceeccCCC
Q psy12680 1460 VVAVKLIEIQLMCAMGPPS----TGNTVTPRFSRHFNQIVINKFD 1500 (2567)
Q Consensus 1460 ~~~~~i~diq~v~am~Ppg----gg~~is~Rf~r~f~vi~i~~p~ 1500 (2567)
. -..-.|+.++|+.+.+- ..+...++|...++++.+.-|+
T Consensus 333 ~-~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPp 376 (520)
T PRK10820 333 D-HEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPP 376 (520)
T ss_pred C-cceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCC
Confidence 1 11125778888876542 1234556677777766655443
No 207
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.41 E-value=0.054 Score=76.13 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=85.7
Q ss_pred HHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEE-Ee---ccCCCCcCcccccccCCCCCCCcch
Q psy12680 358 IYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEII-VI---NPKSITMGQLYGQFDAVSHEWSDGI 433 (2567)
Q Consensus 358 Lye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~-~i---nPKait~~eLyG~~d~~T~EW~DGv 433 (2567)
.++.-++.|.+++.||+|+||||+.++|+++|.--+......+..+..+ .| +|..++.-++-| .++ -||
T Consensus 30 ~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eida----as~---~~V 102 (824)
T PRK07764 30 ALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDA----ASH---GGV 102 (824)
T ss_pred HHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecc----ccc---CCH
Confidence 3444567899999999999999999999999842110000000000000 01 111122212211 110 011
Q ss_pred HHHHHHHHH----hc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceee
Q psy12680 434 LAVSYRQFA----MS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVS 508 (2567)
Q Consensus 434 ls~i~R~~~----~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVS 508 (2567)
.-+|++. .. .....|-||+| .+|..=-+..|.+|. +|- ..|+++.|||=+.+....-|+-.|
T Consensus 103 --d~iR~l~~~~~~~p~~~~~KV~IID-Ead~lt~~a~NaLLK---~LE-------EpP~~~~fIl~tt~~~kLl~TIrS 169 (824)
T PRK07764 103 --DDARELRERAFFAPAESRYKIFIID-EAHMVTPQGFNALLK---IVE-------EPPEHLKFIFATTEPDKVIGTIRS 169 (824)
T ss_pred --HHHHHHHHHHHhchhcCCceEEEEe-chhhcCHHHHHHHHH---HHh-------CCCCCeEEEEEeCChhhhhHHHHh
Confidence 1223321 11 22456778887 356666677787762 111 157889999999888888888899
Q ss_pred eceeEEecCCCCchhhhHHhhhhc
Q psy12680 509 RCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 509 RcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
||-++.|.+- . ..-+..||.+
T Consensus 170 Rc~~v~F~~l--~-~~~l~~~L~~ 190 (824)
T PRK07764 170 RTHHYPFRLV--P-PEVMRGYLER 190 (824)
T ss_pred heeEEEeeCC--C-HHHHHHHHHH
Confidence 9999999853 2 2334556654
No 208
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.41 E-value=0.027 Score=78.12 Aligned_cols=138 Identities=15% Similarity=0.249 Sum_probs=76.7
Q ss_pred HHHHHhcC--CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhh
Q psy12680 1327 MKLLVTHQ--KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSK 1404 (2567)
Q Consensus 1327 l~~ll~~~--~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~ 1404 (2567)
+..++.++ .+++|+||+|||||++++.... ... ...+.+|.+.. ....+...++.-
T Consensus 43 L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~------------------~~~---~~f~~lna~~~-~i~dir~~i~~a 100 (725)
T PRK13341 43 LRRAIKADRVGSLILYGPPGVGKTTLARIIAN------------------HTR---AHFSSLNAVLA-GVKDLRAEVDRA 100 (725)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHH------------------Hhc---Ccceeehhhhh-hhHHHHHHHHHH
Confidence 33344444 3789999999999988864211 111 11233444321 112233333321
Q ss_pred hhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCC
Q psy12680 1405 LDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVT 1484 (2567)
Q Consensus 1405 lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is 1484 (2567)
.+. -+..+++.++|+||+++=..+ ....|+..++.+ .+.++++..++.. ..+.
T Consensus 101 ~~~------l~~~~~~~IL~IDEIh~Ln~~------qQdaLL~~lE~g--------------~IiLI~aTTenp~-~~l~ 153 (725)
T PRK13341 101 KER------LERHGKRTILFIDEVHRFNKA------QQDALLPWVENG--------------TITLIGATTENPY-FEVN 153 (725)
T ss_pred HHH------hhhcCCceEEEEeChhhCCHH------HHHHHHHHhcCc--------------eEEEEEecCCChH-hhhh
Confidence 111 112246779999999653222 123455555532 2446665433211 2355
Q ss_pred cchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1485 PRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1485 ~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+++.+...++.++.++.+.+..|...++.
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHH
Confidence 67776678889999999999999988775
No 209
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.034 Score=75.64 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=83.8
Q ss_pred HHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccC-----------------CccEEEEEeccCCCCcCc
Q psy12680 355 IQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELG-----------------EHKVEIIVINPKSITMGQ 417 (2567)
Q Consensus 355 v~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~-----------------~~~v~~~~inPKait~~e 417 (2567)
..+.+..-+..|..++.||+|+||||+.+.|++++.-....+..+ +....++.||
T Consensus 28 L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eld-------- 99 (618)
T PRK14951 28 LTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELD-------- 99 (618)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecC--------
Confidence 334444445689999999999999999999999985211000000 0111222222
Q ss_pred ccccccCCCCCCCcch--HHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEE
Q psy12680 418 LYGQFDAVSHEWSDGI--LAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIF 494 (2567)
Q Consensus 418 LyG~~d~~T~EW~DGv--ls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llF 494 (2567)
..+ ..|| +-.++..+.... ....+.+|+|. ||-.=.+..|.+| |+|-= .|+++.|||
T Consensus 100 ------aas---~~~Vd~iReli~~~~~~p~~g~~KV~IIDE-vh~Ls~~a~NaLL---KtLEE-------PP~~~~fIL 159 (618)
T PRK14951 100 ------AAS---NRGVDEVQQLLEQAVYKPVQGRFKVFMIDE-VHMLTNTAFNAML---KTLEE-------PPEYLKFVL 159 (618)
T ss_pred ------ccc---ccCHHHHHHHHHHHHhCcccCCceEEEEEC-hhhCCHHHHHHHH---Hhccc-------CCCCeEEEE
Confidence 221 1233 222333322222 23468999995 6766677788777 22221 467889999
Q ss_pred ecCCcCcCCcceeeeceeEEecC
Q psy12680 495 EPQDLEVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 495 Ev~dL~~ASPATVSRcGmVy~~~ 517 (2567)
=+.|....-|.-.|||=.+.|.+
T Consensus 160 ~Ttd~~kil~TIlSRc~~~~f~~ 182 (618)
T PRK14951 160 ATTDPQKVPVTVLSRCLQFNLRP 182 (618)
T ss_pred EECCchhhhHHHHHhceeeecCC
Confidence 99898888888899999888875
No 210
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.37 E-value=0.028 Score=73.16 Aligned_cols=61 Identities=25% Similarity=0.221 Sum_probs=45.7
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhh-hhcCccccccccccC
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGL-IATGAWACFDEFNRI 64 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl-~q~GaW~CFDEfNri 64 (2567)
..+||+|||||.++|.+|+.++.+.+.+.|++-.+ ...+..+|.-+ ....+=.+|||++.|
T Consensus 183 LL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i 250 (398)
T PTZ00454 183 LLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSI 250 (398)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhh
Confidence 45899999999999999999999999999876322 23344455432 234567889998876
No 211
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.033 Score=73.75 Aligned_cols=130 Identities=19% Similarity=0.268 Sum_probs=82.7
Q ss_pred HHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc------------CCccEEEEEeccCCCCcCcccccccCC
Q psy12680 358 IYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL------------GEHKVEIIVINPKSITMGQLYGQFDAV 425 (2567)
Q Consensus 358 Lye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~------------~~~~v~~~~inPKait~~eLyG~~d~~ 425 (2567)
.+..=.+.|+.++.||+|+||||+.++++++++-....... .+....++.||+.+
T Consensus 28 a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas------------- 94 (491)
T PRK14964 28 AFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS------------- 94 (491)
T ss_pred HHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-------------
Confidence 34444567999999999999999999999998532110000 01123334455532
Q ss_pred CCCCCcchHHHHHHHH----Hhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcC
Q psy12680 426 SHEWSDGILAVSYRQF----AMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLE 500 (2567)
Q Consensus 426 T~EW~DGvls~i~R~~----~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~ 500 (2567)
+ -||= -+|+. ... .....+-+|+|- +|-.--+..|.+|.- |-+ -|+++.|||-+++..
T Consensus 95 -~---~~vd--dIR~Iie~~~~~P~~~~~KVvIIDE-ah~Ls~~A~NaLLK~-----LEe-----Pp~~v~fIlatte~~ 157 (491)
T PRK14964 95 -N---TSVD--DIKVILENSCYLPISSKFKVYIIDE-VHMLSNSAFNALLKT-----LEE-----PAPHVKFILATTEVK 157 (491)
T ss_pred -C---CCHH--HHHHHHHHHHhccccCCceEEEEeC-hHhCCHHHHHHHHHH-----HhC-----CCCCeEEEEEeCChH
Confidence 1 1221 23332 112 134578999998 566656666666521 111 367899999999999
Q ss_pred cCCcceeeeceeEEecC
Q psy12680 501 VASPATVSRCGMIYMEP 517 (2567)
Q Consensus 501 ~ASPATVSRcGmVy~~~ 517 (2567)
...|+-.|||=.+.|.+
T Consensus 158 Kl~~tI~SRc~~~~f~~ 174 (491)
T PRK14964 158 KIPVTIISRCQRFDLQK 174 (491)
T ss_pred HHHHHHHHhheeeeccc
Confidence 98888899999988875
No 212
>PRK06893 DNA replication initiation factor; Validated
Probab=95.35 E-value=0.038 Score=66.93 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=73.0
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhh
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRG 82 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a 82 (2567)
.||+|||||+...++|+.+ |+.+..+++++.-.+ ..+++.++.+. -+.|+||+.++...--. .+.+..+-+.
T Consensus 45 ~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~-dlLilDDi~~~~~~~~~--~~~l~~l~n~ 119 (229)
T PRK06893 45 WGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF--SPAVLENLEQQ-DLVCLDDLQAVIGNEEW--ELAIFDLFNR 119 (229)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--hHHHHhhcccC-CEEEEeChhhhcCChHH--HHHHHHHHHH
Confidence 4999999999999999886 567888887643222 23566666544 68999999998633211 1123333333
Q ss_pred hhcCCceEEEcCeEEEeeCceeEEEEeC--CCCCCCCCchhhHhhccc---cccccCCCHHHHHHHHH
Q psy12680 83 VTLGEEEILFEGTILKLDRTCSVFITMN--PGYAGRSELPDNLKSLFR---TVAMMVPDYALISEIIV 145 (2567)
Q Consensus 83 ~~~~~~~~~f~g~~i~l~~~~~iFiTmN--PgYaGRseLPdnLk~lFR---pvam~~PD~~lIaEi~L 145 (2567)
.......+ +.+|-| |..- ...+ +.|++-++ .+.+-.||...+.+++.
T Consensus 120 ~~~~~~~i--------------llits~~~p~~l-~~~~-~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 120 IKEQGKTL--------------LLISADCSPHAL-SIKL-PDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred HHHcCCcE--------------EEEeCCCChHHc-cccc-hhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 33321111 223333 2211 1112 45777777 77799999999998864
No 213
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.32 E-value=0.035 Score=66.65 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=40.0
Q ss_pred EEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcccc---ceeccC
Q psy12680 1422 VVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN---QIVINK 1498 (2567)
Q Consensus 1422 vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~---vi~i~~ 1498 (2567)
++++||+..-. |.+...+.|-.++++ ++++.+ ..++++-.+|..=..+.||+.+.|. ++-+..
T Consensus 100 lL~iDDi~~l~----~~~~~q~~lf~l~n~--~~~~~k--------~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 100 LLIIDDIQFLA----GKQRTQEELFHLFNR--LIESGK--------QLILTSDRPPSELSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp EEEEETGGGGT----THHHHHHHHHHHHHH--HHHTTS--------EEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE--
T ss_pred EEEEecchhhc----CchHHHHHHHHHHHH--HHhhCC--------eEEEEeCCCCccccccChhhhhhHhhcchhhcCC
Confidence 67899986532 222234444444442 112111 1234554666554456777654443 577899
Q ss_pred CCHHHHHHHHHHHHH
Q psy12680 1499 FDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1499 p~~~sL~~If~~il~ 1513 (2567)
|+++....|....+.
T Consensus 166 pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 166 PDDEDRRRILQKKAK 180 (219)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887654
No 214
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.30 E-value=0.047 Score=72.63 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCC------ccHHHHHHhhhhhh-hcCccccccccccCCch---------h
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDS------MDYIGLGKFFKGLI-ATGAWACFDEFNRIDVE---------V 68 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~------~d~~~m~rif~Gl~-q~GaW~CFDEfNri~~~---------v 68 (2567)
.+||+|||||.++|.+|+.+|.+++.++|+.- -.-+.|.++|.=.- .+.|=.-+||+..+-.. .
T Consensus 264 L~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~ 343 (489)
T CHL00195 264 LVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTT 343 (489)
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHH
Confidence 47999999999999999999999999999752 23456777776322 34555669999866321 1
Q ss_pred HHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--cc-ccccccCCCHHHHHHHH
Q psy12680 69 LSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 69 LSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lF-Rpvam~~PD~~lIaEi~ 144 (2567)
-.++++.+..++ ... ...-++.|-|- -..||+.|.. -| +-+.+-.||.+--.+|+
T Consensus 344 ~rvl~~lL~~l~----~~~-------------~~V~vIaTTN~----~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il 401 (489)
T CHL00195 344 NRVLATFITWLS----EKK-------------SPVFVVATANN----IDLLPLEILRKGRFDEIFFLDLPSLEEREKIF 401 (489)
T ss_pred HHHHHHHHHHHh----cCC-------------CceEEEEecCC----hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHH
Confidence 112222222222 111 12223456662 2358877753 33 45778889988777764
No 215
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.26 E-value=0.083 Score=70.87 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=76.0
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhc-ccC----------CccEEEEEeccCCCCcCcccccccCCCCCCCc
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWG-ELG----------EHKVEIIVINPKSITMGQLYGQFDAVSHEWSD 431 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~-~~~----------~~~v~~~~inPKait~~eLyG~~d~~T~EW~D 431 (2567)
...|.+++.||+|+||||+.+.+++++.--.... ..+ +....++.|||.+ ..
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----------------~~ 96 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-----------------NN 96 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc-----------------cC
Confidence 4568999999999999999999999985211000 000 1112234445421 01
Q ss_pred chHHHHHHHH---Hhc--CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcce
Q psy12680 432 GILAVSYRQF---AMS--QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPAT 506 (2567)
Q Consensus 432 Gvls~i~R~~---~~~--~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPAT 506 (2567)
|+ ..+|+. +.. ....++.||+|-+ |..-.+.+|.+|.. |-+ -++++.+||=+++.....|+-
T Consensus 97 ~v--d~iR~l~~~~~~~p~~~~~kVVIIDEa-d~ls~~a~naLLk~-----LEe-----p~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 97 SV--EDVRDLREKVLLAPLRGGRKVYILDEA-HMMSKSAFNALLKT-----LEE-----PPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred CH--HHHHHHHHHHhhccccCCCeEEEEECc-cccCHHHHHHHHHH-----HHh-----CCCCEEEEEEcCChhhCChHH
Confidence 22 123332 211 2346789999975 55444555555432 111 245677888888888888999
Q ss_pred eeeceeEEecC
Q psy12680 507 VSRCGMIYMEP 517 (2567)
Q Consensus 507 VSRcGmVy~~~ 517 (2567)
-|||-.+.|.+
T Consensus 164 ~SRc~~~~f~~ 174 (504)
T PRK14963 164 LSRTQHFRFRR 174 (504)
T ss_pred hcceEEEEecC
Confidence 99999999975
No 216
>PRK08727 hypothetical protein; Validated
Probab=95.20 E-value=0.021 Score=69.38 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=45.3
Q ss_pred EEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeec-CCCCCCCCCCcchhcc---ccceec
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAM-GPPSTGNTVTPRFSRH---FNQIVI 1496 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am-~Ppggg~~is~Rf~r~---f~vi~i 1496 (2567)
-++.+||+.+-..+... -.+++ .++++. |++ ...++.++ .||..=..+.|++.+. ..++.+
T Consensus 95 dlLiIDDi~~l~~~~~~---~~~lf-~l~n~~--~~~---------~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l 159 (233)
T PRK08727 95 SLVALDGLESIAGQRED---EVALF-DFHNRA--RAA---------GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGL 159 (233)
T ss_pred CEEEEeCcccccCChHH---HHHHH-HHHHHH--HHc---------CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEe
Confidence 37889999765432211 12233 233321 221 22344444 4555445567888776 357789
Q ss_pred cCCCHHHHHHHHHHHH
Q psy12680 1497 NKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1497 ~~p~~~sL~~If~~il 1512 (2567)
+.|+++.+..|.....
T Consensus 160 ~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 160 PVLDDVARAAVLRERA 175 (233)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.18 E-value=0.035 Score=78.52 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=50.4
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccC
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRI 64 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri 64 (2567)
..+||+|||||..+|.+|..+|.+++.++|++-++ -+.+.++|.-..+ ..+=..|||+.+|
T Consensus 491 LL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 491 LLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhh
Confidence 45799999999999999999999999999987433 3567788876544 4588899999887
No 218
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.16 E-value=0.013 Score=64.12 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=59.1
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccc-----cccceeeccccccCHHHHHHHHHhhhhc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIE-----QWQPLIMNFSAQTSANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~-----~~~~~~lnfSa~Tts~~~q~~ies~lek 1407 (2567)
.+..++++||+|+|||++++.. .+.+... ...++.++++...++..+-..|...+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 64 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRL------------------ARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGL 64 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHH------------------HHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-
T ss_pred CCcccEEEcCCCCCHHHHHHHH------------------HHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCc
Confidence 4667899999999999988532 2222211 4566788888888888887777777765
Q ss_pred ccCCccCCC-----------CCcEEEEEEcCCCCccccccCCCChHHHHHHHhh
Q psy12680 1408 RRKGVYGPP-----------LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLD 1450 (2567)
Q Consensus 1408 r~~~~~gp~-----------~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid 1450 (2567)
.......+. ..+..++.+||+..=. ....++.||.+.+
T Consensus 65 ~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~-----~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 65 PLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLF-----SDEFLEFLRSLLN 113 (131)
T ss_dssp SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH-----THHHHHHHHHHTC
T ss_pred cccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC-----CHHHHHHHHHHHh
Confidence 544400000 1334789999987622 3677788888876
No 219
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.12 E-value=0.056 Score=70.15 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=32.4
Q ss_pred CCCCCCCchhHHHHHHHHhc---------CeEEEEeCCCCcc-HHHHHHhhhhh
Q psy12680 6 EGPAGTGKTETTKDLAKAVA---------KLCIVFNCSDSMD-YIGLGKFFKGL 49 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG---------~~~~vfNCs~~~d-~~~m~rif~Gl 49 (2567)
.||+|||||.+++.+++.+. ..++.+||.+.-+ +..+.+|...+
T Consensus 46 ~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 99 (365)
T TIGR02928 46 YGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQL 99 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998875 4678889987544 33444444433
No 220
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.10 E-value=1.8 Score=60.22 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhc
Q psy12680 2190 AMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTM 2227 (2567)
Q Consensus 2190 ~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~ 2227 (2567)
..+.+.|.|+.+..-.|...++.+..+..+ +.|+|.|
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~-~~~lr~~ 581 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESE-LQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344555555655555555555555555432 3555555
No 221
>PRK11637 AmiB activator; Provisional
Probab=95.08 E-value=14 Score=49.25 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=8.7
Q ss_pred CccccCchhHHHHHHHH
Q psy12680 2060 RHVYVTPTSYLELISTF 2076 (2567)
Q Consensus 2060 r~~yvTP~syL~~l~~f 2076 (2567)
|++-+-|.-.+.++-.+
T Consensus 16 ~~~~~~~~~~~~ll~~~ 32 (428)
T PRK11637 16 RRFAIRPILYASVLSAG 32 (428)
T ss_pred hhhhhhhHHHHHHHHHH
Confidence 34445565555555433
No 222
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.24 Score=68.98 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=79.1
Q ss_pred cccccCCCCcccceeehhhhhhccccccccchh----hhhhhhhccc-cccceeeccccccCHHHHHHHHHhhhhcccCC
Q psy12680 1337 VMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQ----HFLLKELSIE-QWQPLIMNFSAQTSANQTQDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1337 vll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~----~~ll~~l~~~-~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~ 1411 (2567)
.||+||+|||||++++.....+. +..-....- +..+ ..... ...++.++=++.+.-..+..+++. +
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~-~i~~g~~~DviEidAas~~kVDdIReLie~-v------ 111 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCV-EIAQGRFVDLIEVDAASRTKVDDTRELLDN-V------ 111 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHH-HHhcCCCceEEEeccccccCHHHHHHHHHH-H------
Confidence 48999999999998875332221 110000000 0000 00000 011122222223555666665543 2
Q ss_pred ccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccc
Q psy12680 1412 VYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF 1491 (2567)
Q Consensus 1412 ~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f 1491 (2567)
.|.|..|++-|++||+++|=..+ ...+|||-+-+..+ .+.|+.+++.+. .+.+=+++..
T Consensus 112 ~~~P~~gk~KViIIDEAh~LT~e-----AqNALLKtLEEPP~-------------~vrFILaTTe~~---kLl~TIlSRC 170 (944)
T PRK14949 112 QYRPSRGRFKVYLIDEVHMLSRS-----SFNALLKTLEEPPE-------------HVKFLLATTDPQ---KLPVTVLSRC 170 (944)
T ss_pred HhhhhcCCcEEEEEechHhcCHH-----HHHHHHHHHhccCC-------------CeEEEEECCCch---hchHHHHHhh
Confidence 24456688889999999886544 23445554433211 245666655433 2455556666
Q ss_pred cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1492 NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1492 ~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.++.+..++.+.+......++..
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHH
Confidence 78888999999888877776643
No 223
>KOG0250|consensus
Probab=95.05 E-value=9.8 Score=53.83 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=14.6
Q ss_pred ccccCCCCcccceeehh
Q psy12680 1338 MFIGPTGTGKSCYITVS 1354 (2567)
Q Consensus 1338 ll~GptGTGKT~~i~~~ 1354 (2567)
+++||.|||||+++++.
T Consensus 66 fI~G~NGSGKSAIltAl 82 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILTAL 82 (1074)
T ss_pred EeecCCCCcHHHHHHHH
Confidence 67999999999988753
No 224
>PF13173 AAA_14: AAA domain
Probab=95.04 E-value=0.018 Score=63.09 Aligned_cols=61 Identities=30% Similarity=0.376 Sum_probs=48.6
Q ss_pred CCCCCCCCchhHHHHHHHHhc--CeEEEEeCCCCccHHHH----HHhhhhhh-hcCccccccccccCC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVA--KLCIVFNCSDSMDYIGL----GKFFKGLI-ATGAWACFDEFNRID 65 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG--~~~~vfNCs~~~d~~~m----~rif~Gl~-q~GaW~CFDEfNri~ 65 (2567)
..||.|+|||+.++.+++.+. ..++.+||++.-+.... -+.+.-.. ..+.+.++||+.+++
T Consensus 7 l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 7 LTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred EECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhc
Confidence 469999999999999999988 99999999987775432 23333332 257999999999996
No 225
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.04 E-value=0.14 Score=65.08 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=67.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcC-
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQ- 445 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~- 445 (2567)
.+++.||+|+|||++.+.+++.+.. . + .......+|+.. .. ...++...+++.+...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~-----~-~-~~~~~i~~~~~~-----------~~----~~~~~~~~i~~~~~~~~ 97 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYG-----E-D-WRENFLELNASD-----------ER----GIDVIRNKIKEFARTAP 97 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC-----C-c-cccceEEecccc-----------cc----chHHHHHHHHHHHhcCC
Confidence 4799999999999999999888631 0 1 111122233211 00 0112333444443322
Q ss_pred --CCCceEEEeCCCCCHH---HHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEecC
Q psy12680 446 --NENRKWLIFDGPVDAI---WIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 446 --~~~~~WivfDGpVDa~---WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~~~ 517 (2567)
....+.|++|. +|.. ..+.|-..+++ .++++.+||-..+.....++-.|||.++.+.+
T Consensus 98 ~~~~~~~vviiDe-~~~l~~~~~~~L~~~le~-------------~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 98 VGGAPFKIIFLDE-ADNLTSDAQQALRRTMEM-------------YSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred CCCCCceEEEEeC-cccCCHHHHHHHHHHHhc-------------CCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 13468999996 4433 33444444443 24567888877666666677889999998876
No 226
>PRK14530 adenylate kinase; Provisional
Probab=94.98 E-value=0.031 Score=66.99 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|+|+|||||||||+-+.|++.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998873
No 227
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.97 E-value=0.14 Score=65.66 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=68.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccc------cCCC-CCCC---------
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQF------DAVS-HEWS--------- 430 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~------d~~T-~EW~--------- 430 (2567)
.+++.||||+|||++.+.+++.+.. . + .......+|.. ++++.. ++.- +.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~-----~-~-~~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYG-----D-P-WENNFTEFNVA-----DFFDQGKKYLVEDPRFAHFLGTDKRIRSSK 105 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC-----c-c-cccceEEechh-----hhhhcchhhhhcCcchhhhhhhhhhhccch
Confidence 4899999999999999999988731 0 0 01112233432 221111 0000 0011
Q ss_pred cchHHHHHHHHHhcC--CCCceEEEeCCC--CCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcce
Q psy12680 431 DGILAVSYRQFAMSQ--NENRKWLIFDGP--VDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPAT 506 (2567)
Q Consensus 431 DGvls~i~R~~~~~~--~~~~~WivfDGp--VDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPAT 506 (2567)
..++..+++..+... ....+-||+|-. +++...+.|...|++- ++++++||=+.+-...-|+-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 106 IDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY-------------SRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc-------------cCCCeEEEEeCChhhCchhh
Confidence 122333333332221 234567888873 3455566677666532 34455666544444555777
Q ss_pred eeeceeEEecCC
Q psy12680 507 VSRCGMIYMEPA 518 (2567)
Q Consensus 507 VSRcGmVy~~~~ 518 (2567)
.|||..|.+.|-
T Consensus 173 ~sr~~~v~~~~~ 184 (337)
T PRK12402 173 RSRCLPLFFRAP 184 (337)
T ss_pred cCCceEEEecCC
Confidence 899999988763
No 228
>PRK08118 topology modulation protein; Reviewed
Probab=94.94 E-value=0.031 Score=64.27 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcCCC
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQNE 447 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~ 447 (2567)
|+|+||+||||||+-+.|++.+ +-..++.++++..-+ |. ++-...+.+....--.
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l-------------------~~~~~~lD~l~~~~~-----w~-~~~~~~~~~~~~~~~~ 58 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL-------------------NIPVHHLDALFWKPN-----WE-GVPKEEQITVQNELVK 58 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-------------------CCCceecchhhcccC-----Cc-CCCHHHHHHHHHHHhc
Q ss_pred CceEEEeCC
Q psy12680 448 NRKWLIFDG 456 (2567)
Q Consensus 448 ~~~WivfDG 456 (2567)
...| |+||
T Consensus 59 ~~~w-VidG 66 (167)
T PRK08118 59 EDEW-IIDG 66 (167)
T ss_pred CCCE-EEeC
No 229
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.91 E-value=0.059 Score=65.51 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=74.4
Q ss_pred CCCCCCCCchhHHHHHHHHhc---CeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhh
Q psy12680 5 PEGPAGTGKTETTKDLAKAVA---KLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQR 81 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG---~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~ 81 (2567)
..||+|||||+....+|+.+. ..|+.+++++..++ ...++.++.+. -+.|+||+.++...-- -.+.+..+-+
T Consensus 50 l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~~~-dlliiDdi~~~~~~~~--~~~~lf~l~n 124 (235)
T PRK08084 50 LWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--VPEVLEGMEQL-SLVCIDNIECIAGDEL--WEMAIFDLYN 124 (235)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--hHHHHHHhhhC-CEEEEeChhhhcCCHH--HHHHHHHHHH
Confidence 469999999999999998765 55788888764432 34566676554 5799999999864321 1112222333
Q ss_pred hhhc-CCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc---ccccccCCCHHHHHHHH
Q psy12680 82 GVTL-GEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF---RTVAMMVPDYALISEII 144 (2567)
Q Consensus 82 a~~~-~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF---Rpvam~~PD~~lIaEi~ 144 (2567)
.... +..+ +.+|-|-.+..=..+.+.|++=+ ..+.+-.||.....+++
T Consensus 125 ~~~e~g~~~---------------li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 125 RILESGRTR---------------LLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred HHHHcCCCe---------------EEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 3222 2222 33344322222223456788878 67888899998888874
No 230
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.91 E-value=0.053 Score=73.85 Aligned_cols=134 Identities=22% Similarity=0.365 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccC-----------------CccEEEEEeccCCCCcC
Q psy12680 354 KIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELG-----------------EHKVEIIVINPKSITMG 416 (2567)
Q Consensus 354 Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~-----------------~~~v~~~~inPKait~~ 416 (2567)
...+.++.-+..|++++.||+|+||||+.+.|++++.--...+..+ +.+..++.++|.+.
T Consensus 35 ~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~--- 111 (598)
T PRK09111 35 TLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASH--- 111 (598)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEeccccc---
Confidence 3334444456789999999999999999999999985211100000 11233444554321
Q ss_pred cccccccCCCCCCCcchHHHHHHHHH----hc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCe
Q psy12680 417 QLYGQFDAVSHEWSDGILAVSYRQFA----MS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTS 491 (2567)
Q Consensus 417 eLyG~~d~~T~EW~DGvls~i~R~~~----~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~ 491 (2567)
-|| .-+|+.. .. ....+|-||+|- +|..-.+..|.+|. +|-+ .|+++.
T Consensus 112 --------------~gv--d~IReIie~~~~~P~~a~~KVvIIDE-ad~Ls~~a~naLLK-----tLEe-----Pp~~~~ 164 (598)
T PRK09111 112 --------------TGV--DDIREIIESVRYRPVSARYKVYIIDE-VHMLSTAAFNALLK-----TLEE-----PPPHVK 164 (598)
T ss_pred --------------CCH--HHHHHHHHHHHhchhcCCcEEEEEEC-hHhCCHHHHHHHHH-----HHHh-----CCCCeE
Confidence 111 1233332 11 234568888886 55555566666652 1111 467899
Q ss_pred EEEecCCcCcCCcceeeeceeEEecC
Q psy12680 492 LIFEPQDLEVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 492 llFEv~dL~~ASPATVSRcGmVy~~~ 517 (2567)
|||-+++.....|.-.|||-.+-|.+
T Consensus 165 fIl~tte~~kll~tI~SRcq~~~f~~ 190 (598)
T PRK09111 165 FIFATTEIRKVPVTVLSRCQRFDLRR 190 (598)
T ss_pred EEEEeCChhhhhHHHHhheeEEEecC
Confidence 99999999888888889998887764
No 231
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.13 Score=66.97 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=69.9
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCC--ccEEEEEeccCCCCcCcccccccCCCCCCCcc--hHHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGE--HKVEIIVINPKSITMGQLYGQFDAVSHEWSDG--ILAVSY 438 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~--~~v~~~~inPKait~~eLyG~~d~~T~EW~DG--vls~i~ 438 (2567)
...|++++.||+|+|||+..+.+++.+.. ....... ....+..+ |. ....| -+..++
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~--~~~~~~~~~~~~~~~~l--------------~~---~~~~~~~~i~~l~ 97 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQ--PGYDDPNEDFSFNIFEL--------------DA---ASNNSVDDIRNLI 97 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC--CCCCCCCCCCCcceEEe--------------cc---ccCCCHHHHHHHH
Confidence 34689999999999999999999777631 0000000 01111111 11 01122 223334
Q ss_pred HHHHhc-CCCCceEEEeCCCCCHHHHHHHHhh---hcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEE
Q psy12680 439 RQFAMS-QNENRKWLIFDGPVDAIWIENMNSV---LDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIY 514 (2567)
Q Consensus 439 R~~~~~-~~~~~~WivfDGpVDa~WIEnLNSV---LDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy 514 (2567)
.++... ....++-|++|-. |..--+.+|.. |++ .|+++.+||-+.+.....|+--|||..|-
T Consensus 98 ~~~~~~p~~~~~kiviIDE~-~~l~~~~~~~ll~~le~-------------~~~~~~~Il~~~~~~kl~~~l~sr~~~v~ 163 (367)
T PRK14970 98 DQVRIPPQTGKYKIYIIDEV-HMLSSAAFNAFLKTLEE-------------PPAHAIFILATTEKHKIIPTILSRCQIFD 163 (367)
T ss_pred HHHhhccccCCcEEEEEeCh-hhcCHHHHHHHHHHHhC-------------CCCceEEEEEeCCcccCCHHHHhcceeEe
Confidence 433222 2245678889852 22222334444 332 25567888888888888899899999988
Q ss_pred ecC
Q psy12680 515 MEP 517 (2567)
Q Consensus 515 ~~~ 517 (2567)
+.+
T Consensus 164 ~~~ 166 (367)
T PRK14970 164 FKR 166 (367)
T ss_pred cCC
Confidence 775
No 232
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.91 E-value=0.052 Score=65.39 Aligned_cols=116 Identities=14% Similarity=0.130 Sum_probs=69.6
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchh--HHHHHHHHHhh
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEV--LSVVAQQILTI 79 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~v--LSvvaqqi~~I 79 (2567)
..||+|||||..++.+++.+ |..++.++|++-.+. +..++..+-..+ =.++||+.+++... ...+...+..+
T Consensus 43 l~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~-lLvIDdi~~l~~~~~~~~~L~~~l~~~ 119 (226)
T TIGR03420 43 LWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA--DPEVLEGLEQAD-LVCLDDVEAIAGQPEWQEALFHLYNRV 119 (226)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--HHHHHhhcccCC-EEEEeChhhhcCChHHHHHHHHHHHHH
Confidence 46999999999999999887 477889999876542 134444443334 47799999998743 44444333222
Q ss_pred hhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCch-hhHhhccc---cccccCCCHHHHHHH
Q psy12680 80 QRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELP-DNLKSLFR---TVAMMVPDYALISEI 143 (2567)
Q Consensus 80 q~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLP-dnLk~lFR---pvam~~PD~~lIaEi 143 (2567)
.... ..+.+|.|+...-. .++ +.|.+-|+ .|.+-.|+..-+.++
T Consensus 120 ----~~~~---------------~~iIits~~~~~~~-~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~ 167 (226)
T TIGR03420 120 ----REAG---------------GRLLIAGRAAPAQL-PLRLPDLRTRLAWGLVFQLPPLSDEEKIAA 167 (226)
T ss_pred ----HHcC---------------CeEEEECCCChHHC-CcccHHHHHHHhcCeeEecCCCCHHHHHHH
Confidence 1111 13556666543211 233 66776664 445555555444444
No 233
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.87 E-value=0.066 Score=71.06 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=52.5
Q ss_pred EEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcccc---ceecc
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN---QIVIN 1497 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~---vi~i~ 1497 (2567)
-++++||+..-. |.....|.|..+++. .|+..+ ..++++-.||.--+.+.+|+.+.|. ++-+.
T Consensus 208 dvLiIDDiq~l~----~k~~~~e~lf~l~N~--~~~~~k--------~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~ 273 (450)
T PRK14087 208 DVLIIDDVQFLS----YKEKTNEIFFTIFNN--FIENDK--------QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQ 273 (450)
T ss_pred CEEEEecccccc----CCHHHHHHHHHHHHH--HHHcCC--------cEEEECCCCHHHHhhccHHHHHHHhCCceeccC
Confidence 378899997542 223455667776654 344322 1245556677544567888888886 56689
Q ss_pred CCCHHHHHHHHHHHHH
Q psy12680 1498 KFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1498 ~p~~~sL~~If~~il~ 1513 (2567)
.|+.++...|....+.
T Consensus 274 ~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 274 KLDNKTATAIIKKEIK 289 (450)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987664
No 234
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.86 E-value=0.12 Score=75.41 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc----------------------
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT---------------------- 1392 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T---------------------- 1392 (2567)
+++||+||+|||||.++++. .....+-.+.+..|.--
T Consensus 1631 KGILLiGPPGTGKTlLAKAL---------------------A~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~ 1689 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYL---------------------ATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDD 1689 (2281)
T ss_pred CceEEECCCCCCHHHHHHHH---------------------HHhcCCceEEEEHHHHhhccccccccccccccccccccc
Q ss_pred ---------------------------CHHHHHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHH
Q psy12680 1393 ---------------------------SANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEIL 1445 (2567)
Q Consensus 1393 ---------------------------ts~~~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielL 1445 (2567)
....+.++.+. +....-||||||+|+--..+.-.-+..-.||
T Consensus 1690 ~~~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFel-----------ARk~SPCIIFIDEIDaL~~~ds~~ltL~qLL 1758 (2281)
T CHL00206 1690 SDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFEL-----------AKAMSPCIIWIPNIHDLNVNESNYLSLGLLV 1758 (2281)
T ss_pred ccccccccchhhhhhcchhhhhhhhhhhHHHHHHHHHH-----------HHHCCCeEEEEEchhhcCCCccceehHHHHH
Q ss_pred HHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccc
Q psy12680 1446 RQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEF 1525 (2567)
Q Consensus 1446 RQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v 1525 (2567)
-.+-..++.-... +|-++||-|.|..=.+-.-|=.|.=..+.++.|+...=..|+..++ ..+|+.-+-
T Consensus 1759 neLDg~~~~~s~~--------~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl----~tkg~~L~~ 1826 (2281)
T CHL00206 1759 NSLSRDCERCSTR--------NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLS----YTRGFHLEK 1826 (2281)
T ss_pred HHhccccccCCCC--------CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHH----hhcCCCCCc
Q ss_pred hh-HHHHHHHHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhccchHHHhcH--HHHHHHhhhhhhhhhcccccC
Q psy12680 1526 DP-CIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLSVPEAIESL--LSMKRLWVHEVLRVYYDRLVD 1602 (2567)
Q Consensus 1526 ~~-~~~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~~~~~~i~~~--~~l~rLw~HE~~RVF~DRLv~ 1602 (2567)
+. ..+.++..|.- |+-+||+.++...++..-..-++. ..-++.-.|...--...+...
T Consensus 1827 ~~vdl~~LA~~T~G-------------------fSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~~ 1887 (2281)
T CHL00206 1827 KMFHTNGFGSITMG-------------------SNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRS 1887 (2281)
T ss_pred ccccHHHHHHhCCC-------------------CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcccC
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy12680 1603 SDDRLWLFNTLKYTVEKFL 1621 (2567)
Q Consensus 1603 ~~D~~~f~~~L~~~~~~~~ 1621 (2567)
..++....-.++.++.+.+
T Consensus 1888 ~~~~~ia~yEiGhAvvq~~ 1906 (2281)
T CHL00206 1888 VQDHGILFYQIGRAVAQNV 1906 (2281)
T ss_pred cchhhhhhhHHhHHHHHHh
No 235
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=94.84 E-value=0.13 Score=68.68 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHH
Q psy12680 1320 TLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQD 1399 (2567)
Q Consensus 1320 T~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~ 1399 (2567)
..+....+..+...+.|+++.|++||||+.+.+..... .....-..+.+||++-+. +
T Consensus 148 ~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~------------------s~~~~~~~v~v~c~~~~~-----~ 204 (445)
T TIGR02915 148 MQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQL------------------SDRKDKRFVAINCAAIPE-----N 204 (445)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh------------------CCcCCCCeEEEECCCCCh-----H
Confidence 33444455666678899999999999999877542110 111223467889988653 3
Q ss_pred HHHhhhhcccCCccCCC---------CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeee
Q psy12680 1400 IIMSKLDKRRKGVYGPP---------LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQL 1470 (2567)
Q Consensus 1400 ~ies~lekr~~~~~gp~---------~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~ 1470 (2567)
.+++.+--..++.|... ....-++|+|++.-=. .....-|.++++.+.+....... ..=.|+.+
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~------~~~q~~l~~~l~~~~~~~~~~~~-~~~~~~ri 277 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP------LNLQAKLLRFLQERVIERLGGRE-EIPVDVRI 277 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC------HHHHHHHHHHHhhCeEEeCCCCc-eeeeceEE
Confidence 44444433222222111 1223468888875321 12334455667665443211111 11147889
Q ss_pred eeecCCCCC----CCCCCcchhccccceeccCCCH
Q psy12680 1471 MCAMGPPST----GNTVTPRFSRHFNQIVINKFDD 1501 (2567)
Q Consensus 1471 v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p~~ 1501 (2567)
+++.+.+-. .+...++|...++.+.+.-|+-
T Consensus 278 i~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpL 312 (445)
T TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRIAEISITIPPL 312 (445)
T ss_pred EEecCCCHHHHHHcCCccHHHHHHhccceecCCCc
Confidence 999887621 1345666777777766665554
No 236
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.08 Score=69.44 Aligned_cols=142 Identities=22% Similarity=0.283 Sum_probs=73.4
Q ss_pred HHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc-----CCccEEEE-----EeccCCCCcCcccccccCCCCCC
Q psy12680 360 EMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL-----GEHKVEII-----VINPKSITMGQLYGQFDAVSHEW 429 (2567)
Q Consensus 360 e~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~-----~~~~v~~~-----~inPKait~~eLyG~~d~~T~EW 429 (2567)
+.=.+.|++++.||+|+||||+.+.+++++.--...++. ...+.-.+ ..+-......++ |..+..=
T Consensus 33 ~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~----~~~~~~~ 108 (397)
T PRK14955 33 RMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEF----DAASNNS 108 (397)
T ss_pred HhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEee----cccccCC
Confidence 334568999999999999999999999998410000000 00000000 000000111111 1111000
Q ss_pred CcchHHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceee
Q psy12680 430 SDGILAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVS 508 (2567)
Q Consensus 430 ~DGvls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVS 508 (2567)
.|-|- .+...+...+ ...++-+|+|. +|-.-.++.|.+|. . |- ..|+++.|||-+.+.....|+-.|
T Consensus 109 id~Ir-~l~~~~~~~p~~~~~kvvIIde-a~~l~~~~~~~LLk---~--LE-----ep~~~t~~Il~t~~~~kl~~tl~s 176 (397)
T PRK14955 109 VDDIR-LLRENVRYGPQKGRYRVYIIDE-VHMLSIAAFNAFLK---T--LE-----EPPPHAIFIFATTELHKIPATIAS 176 (397)
T ss_pred HHHHH-HHHHHHhhchhcCCeEEEEEeC-hhhCCHHHHHHHHH---H--Hh-----cCCCCeEEEEEeCChHHhHHHHHH
Confidence 11111 1222222111 23567788886 34333344444431 1 11 146788899988888888888899
Q ss_pred eceeEEecC
Q psy12680 509 RCGMIYMEP 517 (2567)
Q Consensus 509 RcGmVy~~~ 517 (2567)
||-+|-|.+
T Consensus 177 R~~~v~f~~ 185 (397)
T PRK14955 177 RCQRFNFKR 185 (397)
T ss_pred HHHHhhcCC
Confidence 999988875
No 237
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.072 Score=70.67 Aligned_cols=150 Identities=16% Similarity=0.208 Sum_probs=89.4
Q ss_pred CCcccccCCCCcccceeehhhhhhccccccccc-h---hhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccC
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSG-F---QHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRK 1410 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~-~---~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~ 1410 (2567)
++.||+||+|+|||++++..- ...++..-... + -.....-.......++.++=++.+.-..+..+++.-
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA-k~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~------ 108 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS-LCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENS------ 108 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH-HHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHH------
Confidence 358999999999998776421 11111000000 0 000000001123445667777788888888887652
Q ss_pred CccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcc
Q psy12680 1411 GVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRH 1490 (2567)
Q Consensus 1411 ~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~ 1490 (2567)
.|.|..+++-|++||+++|-..+. ...||+- ++.-- ..+.|+.+++-+ ..+.+.+.+.
T Consensus 109 -~~~P~~~~~KVvIIDEah~Ls~~A-----~NaLLK~-LEePp------------~~v~fIlatte~---~Kl~~tI~SR 166 (491)
T PRK14964 109 -CYLPISSKFKVYIIDEVHMLSNSA-----FNALLKT-LEEPA------------PHVKFILATTEV---KKIPVTIISR 166 (491)
T ss_pred -HhccccCCceEEEEeChHhCCHHH-----HHHHHHH-HhCCC------------CCeEEEEEeCCh---HHHHHHHHHh
Confidence 255777888899999987765432 2234443 43200 134455554322 2366778888
Q ss_pred ccceeccCCCHHHHHHHHHHHHH
Q psy12680 1491 FNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1491 f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+.++.+..++.+.+......++.
T Consensus 167 c~~~~f~~l~~~el~~~L~~ia~ 189 (491)
T PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAK 189 (491)
T ss_pred heeeecccccHHHHHHHHHHHHH
Confidence 89999999999999888887764
No 238
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.83 E-value=0.079 Score=72.06 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=75.1
Q ss_pred HHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccc--cccCCCCCCCcchHHHHHH
Q psy12680 362 MIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYG--QFDAVSHEWSDGILAVSYR 439 (2567)
Q Consensus 362 ~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG--~~d~~T~EW~DGvls~i~R 439 (2567)
-...|++++.||+|+||||+.+.|++++.--. +. ...+... +-.-+.+..+.... .+|. .+..|| ..+|
T Consensus 35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~--~~-~~~pCg~-C~sCr~i~~g~~~DvlEida---As~~gV--d~IR 105 (709)
T PRK08691 35 GRLHHAYLLTGTRGVGKTTIARILAKSLNCEN--AQ-HGEPCGV-CQSCTQIDAGRYVDLLEIDA---ASNTGI--DNIR 105 (709)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhcccC--CC-CCCCCcc-cHHHHHHhccCccceEEEec---cccCCH--HHHH
Confidence 34579999999999999999999999974210 00 0000000 00000111111111 1222 123443 2344
Q ss_pred HHHh----c-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEE
Q psy12680 440 QFAM----S-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIY 514 (2567)
Q Consensus 440 ~~~~----~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy 514 (2567)
+... . .....+-||+|. +|-.--+..|.+|. .| - ..|+++.|||=+.|.....|...|||=.+.
T Consensus 106 elle~a~~~P~~gk~KVIIIDE-ad~Ls~~A~NALLK---tL--E-----EPp~~v~fILaTtd~~kL~~TIrSRC~~f~ 174 (709)
T PRK08691 106 EVLENAQYAPTAGKYKVYIIDE-VHMLSKSAFNAMLK---TL--E-----EPPEHVKFILATTDPHKVPVTVLSRCLQFV 174 (709)
T ss_pred HHHHHHHhhhhhCCcEEEEEEC-ccccCHHHHHHHHH---HH--H-----hCCCCcEEEEEeCCccccchHHHHHHhhhh
Confidence 4432 1 124568999997 45544455555441 11 0 145788999999998888888899996665
Q ss_pred ec
Q psy12680 515 ME 516 (2567)
Q Consensus 515 ~~ 516 (2567)
|.
T Consensus 175 f~ 176 (709)
T PRK08691 175 LR 176 (709)
T ss_pred cC
Confidence 44
No 239
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.78 E-value=0.22 Score=69.60 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=94.7
Q ss_pred CcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccc
Q psy12680 1310 VNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFS 1389 (2567)
Q Consensus 1310 ~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfS 1389 (2567)
+.+++-..+..-+....+..+...+.||++.|++||||+.+.++.... .....--++.+||+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~------------------s~r~~~pfv~vnc~ 385 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE------------------SERAAGPYIAVNCQ 385 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh------------------CCccCCCeEEEECC
Confidence 344444455566677778888899999999999999999888653211 11122246788999
Q ss_pred cccCHHHHHHHHHhhhh-cccCCccCCC-CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeee
Q psy12680 1390 AQTSANQTQDIIMSKLD-KRRKGVYGPP-LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIE 1467 (2567)
Q Consensus 1390 a~Tts~~~q~~ies~le-kr~~~~~gp~-~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~d 1467 (2567)
+-+. +.+..-+-+... ...++..|.- ....-++|+|+|.--..+ ...-|-++++.+.+.. ....-..=.|
T Consensus 386 ~~~~-~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~------~Q~~Ll~~l~~~~~~~-~~~~~~~~~~ 457 (638)
T PRK11388 386 LYPD-EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE------LQSALLQVLKTGVITR-LDSRRLIPVD 457 (638)
T ss_pred CCCh-HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHH------HHHHHHHHHhcCcEEe-CCCCceEEee
Confidence 8763 222222222110 0011111111 122357899998732211 2344555665544332 1111111247
Q ss_pred eeeeeecCCCCC----CCCCCcchhccccceeccCCCHH----HHHHHHHHHHH
Q psy12680 1468 IQLMCAMGPPST----GNTVTPRFSRHFNQIVINKFDDD----TMVTIFSKILL 1513 (2567)
Q Consensus 1468 iq~v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p~~~----sL~~If~~il~ 1513 (2567)
+.+++|.+.+-. .+...+++...++.+.+.-|+-. .+..+...++.
T Consensus 458 ~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 458 VRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred EEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 889998876421 13445566666677666555432 34444444443
No 240
>KOG0250|consensus
Probab=94.73 E-value=32 Score=49.12 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=14.6
Q ss_pred EEEcCCCCChHHHHHHHH
Q psy12680 1809 MIVGLSFAGKTCAYRMLS 1826 (2567)
Q Consensus 1809 lLVG~~GSGK~sl~rlla 1826 (2567)
.+||..||||+.+.--++
T Consensus 66 fI~G~NGSGKSAIltAl~ 83 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILTALT 83 (1074)
T ss_pred EeecCCCCcHHHHHHHHH
Confidence 899999999997765443
No 241
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.71 E-value=0.049 Score=63.84 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=84.9
Q ss_pred HHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCc---------------cEEEEEeccCCCCcCccc
Q psy12680 355 IQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEH---------------KVEIIVINPKSITMGQLY 419 (2567)
Q Consensus 355 v~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~---------------~v~~~~inPKait~~eLy 419 (2567)
..+.+..=+..|.+++.||+|+|||++.+.+++.+.--. ..++. ....+.+.|.+
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~---~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~------- 73 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQ---PGGGEPCGECPSCRLIEAGNHPDLHRLEPEG------- 73 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCCCcEEEecccc-------
Confidence 344555556779999999999999999999998873110 00000 11122233321
Q ss_pred ccccCCCCCCCcchHHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCC
Q psy12680 420 GQFDAVSHEWSDGILAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQD 498 (2567)
Q Consensus 420 G~~d~~T~EW~DGvls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~d 498 (2567)
....=..+-.+++.+...+ ...++-||+|- +|..=-+..|.+|+ . | |. .|+++.+||-+.+
T Consensus 74 -------~~~~~~~i~~i~~~~~~~~~~~~~kviiide-~~~l~~~~~~~Ll~---~--l---e~--~~~~~~~il~~~~ 135 (188)
T TIGR00678 74 -------QSIKVDQVRELVEFLSRTPQESGRRVVIIED-AERMNEAAANALLK---T--L---EE--PPPNTLFILITPS 135 (188)
T ss_pred -------CcCCHHHHHHHHHHHccCcccCCeEEEEEec-hhhhCHHHHHHHHH---H--h---cC--CCCCeEEEEEECC
Confidence 1111012223344433222 34678899996 33332333444442 1 1 22 3678889998888
Q ss_pred cCcCCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 499 LEVASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 499 L~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
....-|+..|||-+|.+.|-. ..-+..|+.+
T Consensus 136 ~~~l~~~i~sr~~~~~~~~~~---~~~~~~~l~~ 166 (188)
T TIGR00678 136 PEKLLPTIRSRCQVLPFPPLS---EEALLQWLIR 166 (188)
T ss_pred hHhChHHHHhhcEEeeCCCCC---HHHHHHHHHH
Confidence 889999999999998887632 2234556654
No 242
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=0.099 Score=66.79 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc--C----------CccEEEEEeccCCCCcCcc
Q psy12680 351 FLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL--G----------EHKVEIIVINPKSITMGQL 418 (2567)
Q Consensus 351 ~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~--~----------~~~v~~~~inPKait~~eL 418 (2567)
.+....+.+..-++.|..++.||+|+||++..+.+++++.--...+.. | +..-..+.+.|..
T Consensus 14 ~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~------ 87 (329)
T PRK08058 14 VVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG------ 87 (329)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc------
Confidence 344455555666778999999999999999999999987310000000 0 0011233333321
Q ss_pred cccccCCCCCCCcchHHHHHHHHHh----c-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEE
Q psy12680 419 YGQFDAVSHEWSDGILAVSYRQFAM----S-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLI 493 (2567)
Q Consensus 419 yG~~d~~T~EW~DGvls~i~R~~~~----~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~ll 493 (2567)
.. .+ -.-+|+... . ....+|.+|+|. +|..=.+.-|.+|. +|-+ -|+++.||
T Consensus 88 --------~~--i~--id~ir~l~~~~~~~~~~~~~kvviI~~-a~~~~~~a~NaLLK-----~LEE-----Pp~~~~~I 144 (329)
T PRK08058 88 --------QS--IK--KDQIRYLKEEFSKSGVESNKKVYIIEH-ADKMTASAANSLLK-----FLEE-----PSGGTTAI 144 (329)
T ss_pred --------cc--CC--HHHHHHHHHHHhhCCcccCceEEEeeh-HhhhCHHHHHHHHH-----HhcC-----CCCCceEE
Confidence 10 11 123444322 1 234678999998 34433444444442 1111 47789999
Q ss_pred EecCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 494 FEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 494 FEv~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
|=+++....-|+-.|||=.|.+.+-.- .-+..|+.+
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~---~~~~~~L~~ 180 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPP---ESLIQRLQE 180 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCH---HHHHHHHHH
Confidence 999999999999999999999986421 223566653
No 243
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.66 E-value=0.1 Score=71.11 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=76.2
Q ss_pred HHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc--C----------CccEEEEEeccCCCCcCcccccccCCCCCC
Q psy12680 362 MIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL--G----------EHKVEIIVINPKSITMGQLYGQFDAVSHEW 429 (2567)
Q Consensus 362 ~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~--~----------~~~v~~~~inPKait~~eLyG~~d~~T~EW 429 (2567)
-++.|..++.||+|+|||++.+.|++++.-....... + +....++.|++ .++
T Consensus 35 ~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eida--------------as~-- 98 (559)
T PRK05563 35 GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDA--------------ASN-- 98 (559)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeec--------------ccc--
Confidence 3457999999999999999999999998421100000 0 00112222332 221
Q ss_pred CcchHHHHHHHH----Hhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCc
Q psy12680 430 SDGILAVSYRQF----AMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASP 504 (2567)
Q Consensus 430 ~DGvls~i~R~~----~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASP 504 (2567)
.|+ .-+|+. ... .....+.+|+|. +|-.=.+..|.+|. +|-+ -|+++.|||=+.+.....|
T Consensus 99 -~~v--d~ir~i~~~v~~~p~~~~~kViIIDE-~~~Lt~~a~naLLK-----tLEe-----pp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 99 -NGV--DEIRDIRDKVKYAPSEAKYKVYIIDE-VHMLSTGAFNALLK-----TLEE-----PPAHVIFILATTEPHKIPA 164 (559)
T ss_pred -CCH--HHHHHHHHHHhhCcccCCeEEEEEEC-cccCCHHHHHHHHH-----HhcC-----CCCCeEEEEEeCChhhCcH
Confidence 232 223332 211 234578999998 56555566777763 2211 2678888987777776666
Q ss_pred ceeeeceeEEecC
Q psy12680 505 ATVSRCGMIYMEP 517 (2567)
Q Consensus 505 ATVSRcGmVy~~~ 517 (2567)
+-.|||..+-|.+
T Consensus 165 tI~SRc~~~~f~~ 177 (559)
T PRK05563 165 TILSRCQRFDFKR 177 (559)
T ss_pred HHHhHheEEecCC
Confidence 6689999988864
No 244
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=94.65 E-value=0.3 Score=62.35 Aligned_cols=136 Identities=23% Similarity=0.268 Sum_probs=96.6
Q ss_pred CCCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCc---cHHH--------------------------------------
Q psy12680 3 GAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSM---DYIG-------------------------------------- 41 (2567)
Q Consensus 3 Gap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~---d~~~-------------------------------------- 41 (2567)
.-..|+-|||||.++++|+..|-=--+|-+|-=+- ++..
T Consensus 41 vLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvG 120 (423)
T COG1239 41 ALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVG 120 (423)
T ss_pred eEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhcc
Confidence 34579999999999999999999888886772221 1111
Q ss_pred ---HHHhhhh---------hhh-cCccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEE
Q psy12680 42 ---LGKFFKG---------LIA-TGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFIT 108 (2567)
Q Consensus 42 ---m~rif~G---------l~q-~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiT 108 (2567)
+.|.+++ |++ -+-=.-|||.|.|+..+-- .+.+++..+...+.-+|-.|+..-++=+.-|
T Consensus 121 slDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd-------~LLd~aaeG~n~vereGisi~hpa~fvligT 193 (423)
T COG1239 121 SLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVD-------ALLDVAAEGVNDVEREGISIRHPARFLLIGT 193 (423)
T ss_pred ccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHH-------HHHHHHHhCCceeeeCceeeccCccEEEEee
Confidence 1122221 111 1334569999999985432 3456667788899999999999999999999
Q ss_pred eCCCCCCCCCchhhHhhccccccccC--CCHHHHHHHHHHhh
Q psy12680 109 MNPGYAGRSELPDNLKSLFRTVAMMV--PDYALISEIIVKKL 148 (2567)
Q Consensus 109 mNPgYaGRseLPdnLk~lFRpvam~~--PD~~lIaEi~L~~~ 148 (2567)
|||. +-+|-.-|+.=|=-...+. .|...=+||+....
T Consensus 194 mNPE---eGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 194 MNPE---EGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred cCcc---ccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 9998 7789999999776666554 35555667776443
No 245
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.62 E-value=0.15 Score=67.77 Aligned_cols=133 Identities=20% Similarity=0.277 Sum_probs=74.4
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEE----e-ccCCCCcCcccccccCCCCCCCcchHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIV----I-NPKSITMGQLYGQFDAVSHEWSDGILAVS 437 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~----i-nPKait~~eLyG~~d~~T~EW~DGvls~i 437 (2567)
...|..++.||+|+||||+.+.+++++.--. ...+..+...+. + +......-++-| ...-|+ .-
T Consensus 37 ~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~--~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g-------~~~~gi--d~ 105 (451)
T PRK06305 37 RAAHAYLFSGIRGTGKTTLARIFAKALNCQN--PTEDQEPCNQCASCKEISSGTSLDVLEIDG-------ASHRGI--ED 105 (451)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhcCCC--cccCCCCCcccHHHHHHhcCCCCceEEeec-------cccCCH--HH
Confidence 3469999999999999999999999983110 000000000000 0 000011111111 011122 22
Q ss_pred HHHHHh-----cCCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeecee
Q psy12680 438 YRQFAM-----SQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGM 512 (2567)
Q Consensus 438 ~R~~~~-----~~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGm 512 (2567)
+|+... .....++.||+|. +|..--+..|.+|.- |-+ -|+++.+||=+.+.....|+-.|||-.
T Consensus 106 ir~i~~~l~~~~~~~~~kvvIIde-ad~lt~~~~n~LLk~-----lEe-----p~~~~~~Il~t~~~~kl~~tI~sRc~~ 174 (451)
T PRK06305 106 IRQINETVLFTPSKSRYKIYIIDE-VHMLTKEAFNSLLKT-----LEE-----PPQHVKFFLATTEIHKIPGTILSRCQK 174 (451)
T ss_pred HHHHHHHHHhhhhcCCCEEEEEec-HHhhCHHHHHHHHHH-----hhc-----CCCCceEEEEeCChHhcchHHHHhceE
Confidence 333321 1235678999998 355545555554421 111 256788888888888888889999999
Q ss_pred EEecC
Q psy12680 513 IYMEP 517 (2567)
Q Consensus 513 Vy~~~ 517 (2567)
|.|.+
T Consensus 175 v~f~~ 179 (451)
T PRK06305 175 MHLKR 179 (451)
T ss_pred EeCCC
Confidence 99975
No 246
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.59 E-value=0.072 Score=62.71 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=32.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccc
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQF 422 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~ 422 (2567)
-|.|.|++||||||..+.|++++.. . +..+ ...-.|.+-..++++..+
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~------~-g~~v-~~~~~~~~~~~~~~i~~~ 52 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQE------N-GYDV-LFTREPGGTPIGEKIREL 52 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH------c-CCeE-EEEeCCCCChHHHHHHHH
Confidence 3789999999999999999999853 1 2233 234456554445544444
No 247
>PRK14532 adenylate kinase; Provisional
Probab=94.58 E-value=0.059 Score=63.10 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=49.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCc-----ccc-----cccCCCCCCCcchHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQ-----LYG-----QFDAVSHEWSDGILAV 436 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~e-----LyG-----~~d~~T~EW~DGvls~ 436 (2567)
-|+++|||||||||.-+.|++.+.. .+|.+-.+-..+ -.| .++ ....-.|-++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~--------------~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 66 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGM--------------VQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIA 66 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC--------------eEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHH
Confidence 3899999999999999999887521 111111000000 011 011 011123456666
Q ss_pred HHHHHHhcCCCCceEEEeCC-CCCHHHHHHHHhhhc
Q psy12680 437 SYRQFAMSQNENRKWLIFDG-PVDAIWIENMNSVLD 471 (2567)
Q Consensus 437 i~R~~~~~~~~~~~WivfDG-pVDa~WIEnLNSVLD 471 (2567)
++++....... ..-+|+|| |-....++.+...+.
T Consensus 67 ~~~~~~~~~~~-~~g~vldg~pr~~~q~~~~~~~l~ 101 (188)
T PRK14532 67 LIEERLPEAEA-AGGAIFDGFPRTVAQAEALDKMLA 101 (188)
T ss_pred HHHHHHhCcCc-cCcEEEeCCCCCHHHHHHHHHHHH
Confidence 66655433332 34567798 778888888876654
No 248
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.1 Score=67.63 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=71.8
Q ss_pred CCCCCCCCchhHHHHHHHHhcC-------eE-----------------EEEeCCCCccHHHHHHhhhhhhhc---Cc--c
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAK-------LC-----------------IVFNCSDSMDYIGLGKFFKGLIAT---GA--W 55 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~-------~~-----------------~vfNCs~~~d~~~m~rif~Gl~q~---Ga--W 55 (2567)
..||.|||||.+++.+|+.+.. +| +.++.+.......+-.+...+... |- -
T Consensus 43 ~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kv 122 (363)
T PRK14961 43 LSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKV 122 (363)
T ss_pred EecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceE
Confidence 4799999999999999999863 11 223333334445555555544332 22 4
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCC
Q psy12680 56 ACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVP 135 (2567)
Q Consensus 56 ~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~P 135 (2567)
.-+||+.+++.+...++ +..+ ...... .+-||+|-++ ..||+.|++-+..+.+-.|
T Consensus 123 iIIDEa~~l~~~a~naL---Lk~l----Ee~~~~------------~~fIl~t~~~-----~~l~~tI~SRc~~~~~~~l 178 (363)
T PRK14961 123 YLIDEVHMLSRHSFNAL---LKTL----EEPPQH------------IKFILATTDV-----EKIPKTILSRCLQFKLKII 178 (363)
T ss_pred EEEEChhhcCHHHHHHH---HHHH----hcCCCC------------eEEEEEcCCh-----HhhhHHHHhhceEEeCCCC
Confidence 66788877766443332 1111 111111 1235666554 3589999988899999999
Q ss_pred CHHHHHHHHH
Q psy12680 136 DYALISEIIV 145 (2567)
Q Consensus 136 D~~lIaEi~L 145 (2567)
+..-+.+.+-
T Consensus 179 ~~~el~~~L~ 188 (363)
T PRK14961 179 SEEKIFNFLK 188 (363)
T ss_pred CHHHHHHHHH
Confidence 9988877654
No 249
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.53 E-value=0.033 Score=67.17 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
|+|+|||||||||.-+.|++.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999863
No 250
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.52 E-value=0.082 Score=72.11 Aligned_cols=79 Identities=13% Similarity=0.287 Sum_probs=50.8
Q ss_pred eeEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCCCcCcccccccce--eeec
Q psy12680 932 RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQ--IVIN 1009 (2567)
Q Consensus 932 ~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~~i~~r~~r~f~~--~~~~ 1009 (2567)
.+||++||+..=... . -++|-+++.- ..... ..+.+||+.++-.-...+.||+...|.. +.++
T Consensus 870 v~IIILDEID~L~kK---~---QDVLYnLFR~---~~~s~------SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~ 934 (1164)
T PTZ00112 870 VSILIIDEIDYLITK---T---QKVLFTLFDW---PTKIN------SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFS 934 (1164)
T ss_pred ceEEEeehHhhhCcc---H---HHHHHHHHHH---hhccC------CeEEEEEecCchhcchhhhhhhhhccccccccCC
Confidence 469999999865432 1 2566666662 21110 1355677777543334667788776654 7789
Q ss_pred cCCchhhHHHHHHHHh
Q psy12680 1010 KFDDDTMVTIFSKILL 1025 (2567)
Q Consensus 1010 ~~~~~~l~~i~~~~l~ 1025 (2567)
+++.++|..|...-+.
T Consensus 935 PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 935 PYKGDEIEKIIKERLE 950 (1164)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999998776654
No 251
>PRK09087 hypothetical protein; Validated
Probab=94.46 E-value=0.05 Score=65.64 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=34.2
Q ss_pred hhhhccCCCCCCCCcCccccccc---ceeeeccCCchhhHHHHHHHHh
Q psy12680 981 QLMCAMGPPSTGNTVTPRFSRHF---NQIVINKFDDDTMVTIFSKILL 1025 (2567)
Q Consensus 981 ~~~~a~~p~~~~~~i~~r~~r~f---~~~~~~~~~~~~l~~i~~~~l~ 1025 (2567)
.++++..+|..=....|++...+ -++-+..|+++++..|......
T Consensus 120 ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 120 LLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred EEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 45566667765556678888888 7888999999998888776554
No 252
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.43 E-value=0.11 Score=70.50 Aligned_cols=158 Identities=14% Similarity=0.182 Sum_probs=83.0
Q ss_pred HHHHHhcCC---CcccccCCCCcccceeehhhhhhcccccccc-ch-----hhhhhhhhccccccceeeccccccCHHHH
Q psy12680 1327 MKLLVTHQK---PVMFIGPTGTGKSCYITVSILFIKNNSRLRS-GF-----QHFLLKELSIEQWQPLIMNFSAQTSANQT 1397 (2567)
Q Consensus 1327 l~~ll~~~~---pvll~GptGTGKT~~i~~~~~~~~~~~~l~~-~~-----~~~ll~~l~~~~~~~~~lnfSa~Tts~~~ 1397 (2567)
+..++.+++ ..||+||+|||||++++..-.. .++..-.. .. ..-.+..-......++.++=++...-..+
T Consensus 25 L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~-l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~i 103 (584)
T PRK14952 25 LSSALDAGRINHAYLFSGPRGCGKTSSARILARS-LNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDT 103 (584)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH-hccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHH
Confidence 444555543 3589999999999888642211 11100000 00 00000000012233444544444444555
Q ss_pred HHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCC
Q psy12680 1398 QDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPP 1477 (2567)
Q Consensus 1398 q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Pp 1477 (2567)
.++++. -.|.|..+++=||+||+.+|-..+ ....||+-+=+.- ..+.||.+++-+
T Consensus 104 Rel~~~-------~~~~P~~~~~KVvIIDEah~Lt~~-----A~NALLK~LEEpp-------------~~~~fIL~tte~ 158 (584)
T PRK14952 104 RELRDR-------AFYAPAQSRYRIFIVDEAHMVTTA-----GFNALLKIVEEPP-------------EHLIFIFATTEP 158 (584)
T ss_pred HHHHHH-------HHhhhhcCCceEEEEECCCcCCHH-----HHHHHHHHHhcCC-------------CCeEEEEEeCCh
Confidence 554432 235676777788999999887654 2233444433211 135566555444
Q ss_pred CCCCCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1478 STGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1478 ggg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
..+.+-+.+...++.+..++.+.+......++.
T Consensus 159 ---~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 159 ---EKVLPTIRSRTHHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred ---HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHH
Confidence 245555555567777888888888777766653
No 253
>PRK07261 topology modulation protein; Provisional
Probab=94.42 E-value=0.085 Score=60.91 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+|+|||||||..+.|++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987664
No 254
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.41 E-value=0.11 Score=70.81 Aligned_cols=148 Identities=16% Similarity=0.215 Sum_probs=82.1
Q ss_pred cccccCCCCcccceeehhhhhhcccccc-ccch--hhhhhhhhccc-cccceeeccccccCHHHHHHHHHhhhhcccCCc
Q psy12680 1337 VMFIGPTGTGKSCYITVSILFIKNNSRL-RSGF--QHFLLKELSIE-QWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGV 1412 (2567)
Q Consensus 1337 vll~GptGTGKT~~i~~~~~~~~~~~~l-~~~~--~~~ll~~l~~~-~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~ 1412 (2567)
.||+||+|+|||++++.....+ ++..- .... ..-.-+.+... ....+.++=++.+.-+.+.++++. + .
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L-~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~-~------~ 112 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGL-NCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDN-V------Q 112 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhh-hhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHH-H------H
Confidence 5899999999999886422111 11100 0000 00000001101 112333443444666777776643 2 3
Q ss_pred cCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcccc
Q psy12680 1413 YGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN 1492 (2567)
Q Consensus 1413 ~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~ 1492 (2567)
|.|..|++-|++||+++|=..+ ....||+-+-+..+ .+.|+.+++-+. .+.+-+++.+.
T Consensus 113 ~~p~~g~~KV~IIDEah~Ls~~-----a~NALLKtLEEPp~-------------~v~FIL~Tt~~~---kLl~TI~SRC~ 171 (647)
T PRK07994 113 YAPARGRFKVYLIDEVHMLSRH-----SFNALLKTLEEPPE-------------HVKFLLATTDPQ---KLPVTILSRCL 171 (647)
T ss_pred hhhhcCCCEEEEEechHhCCHH-----HHHHHHHHHHcCCC-------------CeEEEEecCCcc---ccchHHHhhhe
Confidence 5566788889999998875543 44567775544211 345666655443 34444555577
Q ss_pred ceeccCCCHHHHHHHHHHHHH
Q psy12680 1493 QIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1493 vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+..++.+.+......++.
T Consensus 172 ~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 172 QFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred EeeCCCCCHHHHHHHHHHHHH
Confidence 788889999888877776653
No 255
>PRK05642 DNA replication initiation factor; Validated
Probab=94.40 E-value=0.048 Score=66.25 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=43.9
Q ss_pred EEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccc---cceeccC
Q psy12680 1422 VVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF---NQIVINK 1498 (2567)
Q Consensus 1422 vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f---~vi~i~~ 1498 (2567)
++++||+..-..+ ....+.|=.+++. .|+.. ...++++..+|..=....|++.+.| .++-+..
T Consensus 100 ~LiiDDi~~~~~~----~~~~~~Lf~l~n~--~~~~g--------~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~ 165 (234)
T PRK05642 100 LVCLDDLDVIAGK----ADWEEALFHLFNR--LRDSG--------RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRG 165 (234)
T ss_pred EEEEechhhhcCC----hHHHHHHHHHHHH--HHhcC--------CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCC
Confidence 6779999854322 1222333344432 22221 1234555555544344567887777 6777899
Q ss_pred CCHHHHHHHHHH
Q psy12680 1499 FDDDTMVTIFSK 1510 (2567)
Q Consensus 1499 p~~~sL~~If~~ 1510 (2567)
|+++.+..|...
T Consensus 166 ~~~e~~~~il~~ 177 (234)
T PRK05642 166 LSDEDKLRALQL 177 (234)
T ss_pred CCHHHHHHHHHH
Confidence 999998888764
No 256
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.19 Score=67.88 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=73.3
Q ss_pred HHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc------------CCccEEEEEeccCCCCcCcccccccCCCC
Q psy12680 360 EMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL------------GEHKVEIIVINPKSITMGQLYGQFDAVSH 427 (2567)
Q Consensus 360 e~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~------------~~~~v~~~~inPKait~~eLyG~~d~~T~ 427 (2567)
+.-+..|++++.||+|+||||+.+.|++++.--...... .+....++.+|+. ++
T Consensus 32 ~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAA--------------s~ 97 (702)
T PRK14960 32 ERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAA--------------SR 97 (702)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccc--------------cc
Confidence 344557999999999999999999999998421100000 0111122333331 11
Q ss_pred CCCcchHHHHHHHHHh----cC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcC
Q psy12680 428 EWSDGILAVSYRQFAM----SQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVA 502 (2567)
Q Consensus 428 EW~DGvls~i~R~~~~----~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~A 502 (2567)
.|| .-+|+... .. ....+-+|+|- ||-.=-+..|.+|- +|- ..|+++.|||=+.|....
T Consensus 98 ---~~V--ddIReli~~~~y~P~~gk~KV~IIDE-Vh~LS~~A~NALLK-----tLE-----EPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 98 ---TKV--EDTRELLDNVPYAPTQGRFKVYLIDE-VHMLSTHSFNALLK-----TLE-----EPPEHVKFLFATTDPQKL 161 (702)
T ss_pred ---CCH--HHHHHHHHHHhhhhhcCCcEEEEEec-hHhcCHHHHHHHHH-----HHh-----cCCCCcEEEEEECChHhh
Confidence 122 12333321 11 23457888885 33222234444442 111 135778999988888777
Q ss_pred CcceeeeceeEEecC
Q psy12680 503 SPATVSRCGMIYMEP 517 (2567)
Q Consensus 503 SPATVSRcGmVy~~~ 517 (2567)
.|+-+|||-.+.|.+
T Consensus 162 p~TIlSRCq~feFkp 176 (702)
T PRK14960 162 PITVISRCLQFTLRP 176 (702)
T ss_pred hHHHHHhhheeeccC
Confidence 666689999999875
No 257
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.40 E-value=0.14 Score=65.70 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccC--C--------CCcCcc
Q psy12680 349 PFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPK--S--------ITMGQL 418 (2567)
Q Consensus 349 ~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPK--a--------it~~eL 418 (2567)
..-.....+.+..=...|++++.||+|+||||+.+.+++.+.- ..... ..+. ...+|- + -+...+
T Consensus 29 ~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc--~~~~~-~~~~--~~~~~~~~c~~c~~i~~~~hPdl 103 (351)
T PRK09112 29 EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS--HPDPA-EAPE--TLADPDPASPVWRQIAQGAHPNL 103 (351)
T ss_pred HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC--CCccc-cCcc--ccCCCCCCCHHHHHHHcCCCCCE
Confidence 3334444555566667899999999999999999999998731 00000 0000 000110 0 011111
Q ss_pred c---ccccCCCCCCCcchHHHHHHHHHh-----cCCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCC
Q psy12680 419 Y---GQFDAVSHEWSDGILAVSYRQFAM-----SQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTT 490 (2567)
Q Consensus 419 y---G~~d~~T~EW~DGvls~i~R~~~~-----~~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~ 490 (2567)
+ ..+|+.+.....+|--.-+|+... .....++.+|+|- +|..=.+..|.+|- +| |. -|+++
T Consensus 104 ~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDe-Ad~l~~~aanaLLk---~L-----EE--pp~~~ 172 (351)
T PRK09112 104 LHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDP-ADDMNRNAANAILK---TL-----EE--PPARA 172 (351)
T ss_pred EEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEc-hhhcCHHHHHHHHH---HH-----hc--CCCCc
Confidence 1 122333333333444445565432 1234567788884 44444455666552 22 33 35667
Q ss_pred eEEEecCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 491 SLIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 491 ~llFEv~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
.+|+=+++.....|...|||-.+.+.|-. ..-+..|+..
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~---~~~~~~~L~~ 211 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLD---DDELKKALSH 211 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCC---HHHHHHHHHH
Confidence 77887888888889999999999987632 2234556654
No 258
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.37 E-value=0.084 Score=73.23 Aligned_cols=122 Identities=23% Similarity=0.263 Sum_probs=77.7
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCC------CccHHHHHHhhhhhh-hcCccccccccccCCc----------
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSD------SMDYIGLGKFFKGLI-ATGAWACFDEFNRIDV---------- 66 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~------~~d~~~m~rif~Gl~-q~GaW~CFDEfNri~~---------- 66 (2567)
...||+|||||.++|.+++.+|.+.+.++|++ +.....+..+|.-.. ...+-..+||++.+-.
T Consensus 189 ll~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~ 268 (644)
T PRK10733 189 LMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 268 (644)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCc
Confidence 45899999999999999999999999999986 334455556665432 2457899999988732
Q ss_pred -hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHh---hccccccccCCCHHHHHH
Q psy12680 67 -EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLK---SLFRTVAMMVPDYALISE 142 (2567)
Q Consensus 67 -~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk---~lFRpvam~~PD~~lIaE 142 (2567)
+.-.++.+++..+-. . .+ +..+-++.|.|+- ..|++-|. .+-|.|.+-.||.+--.+
T Consensus 269 ~~~~~~ln~lL~~mdg-~---------~~-----~~~vivIaaTN~p----~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~ 329 (644)
T PRK10733 269 DEREQTLNQMLVEMDG-F---------EG-----NEGIIVIAATNRP----DVLDPALLRPGRFDRQVVVGLPDVRGREQ 329 (644)
T ss_pred hHHHHHHHHHHHhhhc-c---------cC-----CCCeeEEEecCCh----hhcCHHHhCCcccceEEEcCCCCHHHHHH
Confidence 223344444433211 0 11 1223345577741 12444443 234889999999876666
Q ss_pred HH
Q psy12680 143 II 144 (2567)
Q Consensus 143 i~ 144 (2567)
|+
T Consensus 330 Il 331 (644)
T PRK10733 330 IL 331 (644)
T ss_pred HH
Confidence 64
No 259
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=94.37 E-value=0.19 Score=65.65 Aligned_cols=215 Identities=19% Similarity=0.252 Sum_probs=127.4
Q ss_pred CCcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecc
Q psy12680 1309 PVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNF 1388 (2567)
Q Consensus 1309 ~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnf 1388 (2567)
.+.+|+=..+...|..-++...-....+||+.|.+||||..+.++.. +. .+...--++.+||
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH-----~~-------------S~R~~~PFIaiNC 304 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIH-----NL-------------SPRANGPFIAINC 304 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHH-----hc-------------CcccCCCeEEEec
Confidence 45667767777888888888888999999999999999998775421 11 1122234688999
Q ss_pred ccccCHHHHHHHHHhhhhcccCCccCCC--CCcE--------EEEEEcCCC-CccccccCCCChHHHHHHHhhccccccc
Q psy12680 1389 SAQTSANQTQDIIMSKLDKRRKGVYGPP--LGKR--------CVVFVDDVN-MPLKEEFGAQPPIEILRQWLDHWMWYDR 1457 (2567)
Q Consensus 1389 Sa~Tts~~~q~~ies~lekr~~~~~gp~--~gK~--------~vvFiDDiN-mP~~d~yGtQ~~ielLRQlid~~g~ydr 1457 (2567)
-|-- ..++||-|--.-+|.|--+ .||+ -.+|.|+|| ||..-+ --|||-|-|..- + |
T Consensus 305 aAiP-----e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQ------aKLLRVLQEkei-~-r 371 (560)
T COG3829 305 AAIP-----ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQ------AKLLRVLQEKEI-E-R 371 (560)
T ss_pred ccCC-----HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHH------HHHHHHHhhceE-E-e
Confidence 7654 4578898886655554332 1233 467999987 443221 146887766422 2 2
Q ss_pred CcceeeeeeeeeeeeecCCCC-----CCCCCCcchhccccceeccCCCHH----HHHHHHHHHHHhhhcccCCcccchhH
Q psy12680 1458 KDVVAVKLIEIQLMCAMGPPS-----TGNTVTPRFSRHFNQIVINKFDDD----TMVTIFSKILLWHLDTRGFSKEFDPC 1528 (2567)
Q Consensus 1458 ~~~~~~~i~diq~v~am~Ppg-----gg~~is~Rf~r~f~vi~i~~p~~~----sL~~If~~il~~~l~~~gf~~~v~~~ 1528 (2567)
-...--.-+|+.+|||+|-+- .| +.=.++.-.+||+.+.-|+-. .+...-..++..+ ++.+...+..+
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G-~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~--s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEG-TFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKF--SRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcC-cchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHH--HHHcCCCcccC
Confidence 112222347999999999641 12 222345555688777666532 2222222222111 22344444444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhc
Q psy12680 1529 IEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLL 1572 (2567)
Q Consensus 1529 ~~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~ 1572 (2567)
.+...... .+.++=-|.|+|.+++..++.
T Consensus 449 s~~a~~~L---------------~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 449 SPDALALL---------------LRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred CHHHHHHH---------------HhCCCCchHHHHHHHHHHHHh
Confidence 44433321 224566799999999988664
No 260
>PRK06620 hypothetical protein; Validated
Probab=94.34 E-value=0.095 Score=62.75 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhhhhc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTL 85 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~ 85 (2567)
.||+|+|||+.....++..+.+++. .....+ . .....-..|+||+.++..+ .+..+-+.++.
T Consensus 50 ~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~~-----~----~~~~~d~lliDdi~~~~~~-------~lf~l~N~~~e 111 (214)
T PRK06620 50 KGPSSSGKTYLTKIWQNLSNAYIIK--DIFFNE-----E----ILEKYNAFIIEDIENWQEP-------ALLHIFNIINE 111 (214)
T ss_pred ECCCCCCHHHHHHHHHhccCCEEcc--hhhhch-----h----HHhcCCEEEEeccccchHH-------HHHHHHHHHHh
Confidence 6999999999999999988864332 221111 1 1223467899999987432 23334444444
Q ss_pred CCceEEEcCeEEEeeCceeEEEEeC--CCCCCCCCchhhHhhccc---cccccCCCHHHHHHHHH
Q psy12680 86 GEEEILFEGTILKLDRTCSVFITMN--PGYAGRSELPDNLKSLFR---TVAMMVPDYALISEIIV 145 (2567)
Q Consensus 86 ~~~~~~f~g~~i~l~~~~~iFiTmN--PgYaGRseLPdnLk~lFR---pvam~~PD~~lIaEi~L 145 (2567)
.... +.||.. |.+- .|| .|++=+. .+.+-.||...+.+++.
T Consensus 112 ~g~~---------------ilits~~~p~~l---~l~-~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 112 KQKY---------------LLLTSSDKSRNF---TLP-DLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred cCCE---------------EEEEcCCCcccc---chH-HHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 3333 344443 3332 374 5999888 89999999999877754
No 261
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.12 Score=70.11 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=78.0
Q ss_pred HHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC---cCcccccccCCCCCCCcchHHHH
Q psy12680 361 MMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT---MGQLYGQFDAVSHEWSDGILAVS 437 (2567)
Q Consensus 361 ~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait---~~eLyG~~d~~T~EW~DGvls~i 437 (2567)
.-...|+.++.||+|+||||+.+.+++++.--. +.. ..+.-.+ -.=..+. ..+++ .+|..++-..|- +-.+
T Consensus 34 ~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~--~~~-~~pcg~C-~~C~~i~~~~~~d~~-ei~~~~~~~vd~-ir~l 107 (527)
T PRK14969 34 QQRLHHAYLFTGTRGVGKTTLARILAKSLNCET--GVT-ATPCGVC-SACLEIDSGRFVDLI-EVDAASNTQVDA-MREL 107 (527)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCC--CCC-CCCCCCC-HHHHHHhcCCCCcee-EeeccccCCHHH-HHHH
Confidence 334579999999999999999999999984100 000 0000000 0000000 01111 123222211111 1122
Q ss_pred HHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEec
Q psy12680 438 YRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYME 516 (2567)
Q Consensus 438 ~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~~ 516 (2567)
+..+...+ ...++-+|+|. +|..-.+..|.+|. +| -+ .|+++.|||=+.|....-|.-.|||=.+.|.
T Consensus 108 ~~~~~~~p~~~~~kVvIIDE-ad~ls~~a~naLLK---~L--Ee-----pp~~~~fIL~t~d~~kil~tI~SRc~~~~f~ 176 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDE-VHMLSKSAFNAMLK---TL--EE-----PPEHVKFILATTDPQKIPVTVLSRCLQFNLK 176 (527)
T ss_pred HHHHhhCcccCCceEEEEcC-cccCCHHHHHHHHH---HH--hC-----CCCCEEEEEEeCChhhCchhHHHHHHHHhcC
Confidence 22222222 23457788887 67777778887762 11 11 3678999999988877776669999998887
Q ss_pred C
Q psy12680 517 P 517 (2567)
Q Consensus 517 ~ 517 (2567)
+
T Consensus 177 ~ 177 (527)
T PRK14969 177 Q 177 (527)
T ss_pred C
Confidence 5
No 262
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.30 E-value=0.03 Score=66.85 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.1
Q ss_pred CCcccccCCCCcccceeehhhh
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSIL 1356 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~ 1356 (2567)
.++||.|+.|||||++|++.+.
T Consensus 53 nnvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHH
Confidence 5789999999999999987543
No 263
>KOG0737|consensus
Probab=94.29 E-value=0.052 Score=67.45 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=48.5
Q ss_pred cEEEEEEcCCCCccccccCCCChHHHH----HHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccc-cc
Q psy12680 1419 KRCVVFVDDVNMPLKEEFGAQPPIEIL----RQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF-NQ 1493 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~d~yGtQ~~ielL----RQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f-~v 1493 (2567)
+-+|+|||+++-=.... + -.=.|.. +|++-. ||.- .-..-..|-++||-|-| +++..+.+|.+ .+
T Consensus 186 ~P~iIFIDEvds~L~~R-~-s~dHEa~a~mK~eFM~~---WDGl--~s~~~~rVlVlgATNRP---~DlDeAiiRR~p~r 255 (386)
T KOG0737|consen 186 QPSIIFIDEVDSFLGQR-R-STDHEATAMMKNEFMAL---WDGL--SSKDSERVLVLGATNRP---FDLDEAIIRRLPRR 255 (386)
T ss_pred CcceeehhhHHHHHhhc-c-cchHHHHHHHHHHHHHH---hccc--cCCCCceEEEEeCCCCC---ccHHHHHHHhCcce
Confidence 35899999987422222 1 1112322 344443 3320 00111225556666654 55666665554 45
Q ss_pred eeccCCCHHHHHHHHHHHHHh
Q psy12680 1494 IVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1494 i~i~~p~~~sL~~If~~il~~ 1514 (2567)
+.++-|+...=..|++.||+.
T Consensus 256 f~V~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 256 FHVGLPDAEQRRKILKVILKK 276 (386)
T ss_pred eeeCCCchhhHHHHHHHHhcc
Confidence 788999999999999988743
No 264
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.28 E-value=0.028 Score=70.44 Aligned_cols=95 Identities=22% Similarity=0.372 Sum_probs=54.7
Q ss_pred ccccccccc-hhhHHHHHHHhhhcccCcccCCCCCceeEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhhh
Q psy12680 897 IMNFSAQTS-ANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAV 975 (2567)
Q Consensus 897 ~~~fs~~ts-~~~~q~~i~~~lekr~~~~~gp~~~k~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~ 975 (2567)
+..|||-|+ -+..+.++|.- +++++ .|++.|+|||.++==.+.+ +|...-
T Consensus 76 f~~~sAv~~gvkdlr~i~e~a-~~~~~------~gr~tiLflDEIHRfnK~Q----------------------QD~lLp 126 (436)
T COG2256 76 FEALSAVTSGVKDLREIIEEA-RKNRL------LGRRTILFLDEIHRFNKAQ----------------------QDALLP 126 (436)
T ss_pred eEEeccccccHHHHHHHHHHH-HHHHh------cCCceEEEEehhhhcChhh----------------------hhhhhh
Confidence 455777777 44555555543 22222 2889999999987543321 111222
Q ss_pred hhhh--hhhhhccCC-CCCCCCcCcccccccceeeeccCCchhhHHHHHH
Q psy12680 976 KLIE--IQLMCAMGP-PSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSK 1022 (2567)
Q Consensus 976 ~~~~--~~~~~a~~p-~~~~~~i~~r~~r~f~~~~~~~~~~~~l~~i~~~ 1022 (2567)
.+++ +.+|+|..- |+ ..|+|-+.+--.++.+.+-+.+++..+...
T Consensus 127 ~vE~G~iilIGATTENPs--F~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 127 HVENGTIILIGATTENPS--FELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred hhcCCeEEEEeccCCCCC--eeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 2222 456666442 32 467777777777777777777777665554
No 265
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.27 E-value=0.062 Score=71.73 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=49.3
Q ss_pred EEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCCCcCcccccccc---eeeecc
Q psy12680 934 VVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN---QIVINK 1010 (2567)
Q Consensus 934 ~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~~i~~r~~r~f~---~~~~~~ 1010 (2567)
+++|||+..-.......+.-..++..+.+.| . ..++++-.||..-..+.+|+.+-|. ++.+..
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~------~--------~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~ 279 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAG------K--------QIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEP 279 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCC------C--------cEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecC
Confidence 8999999765322211111222222233221 1 1456666777654457788888884 677999
Q ss_pred CCchhhHHHHHHHHhh
Q psy12680 1011 FDDDTMVTIFSKILLW 1026 (2567)
Q Consensus 1011 ~~~~~l~~i~~~~l~~ 1026 (2567)
|+.++...|.......
T Consensus 280 pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 280 PDLETRIAILKKKAEE 295 (450)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998887754
No 266
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.25 E-value=0.11 Score=67.22 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=73.3
Q ss_pred CCCCCCCchhHHHHHHHHhcCe------------------------EEEEeCCCCccHHHHHHhhhhhhhc---C--ccc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKL------------------------CIVFNCSDSMDYIGLGKFFKGLIAT---G--AWA 56 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~------------------------~~vfNCs~~~d~~~m~rif~Gl~q~---G--aW~ 56 (2567)
.||.|+|||++++.||+.+... ++.+|=++......+.+++.-+... | -..
T Consensus 42 ~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vv 121 (355)
T TIGR02397 42 SGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVY 121 (355)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEE
Confidence 7999999999999999998532 3444444444444555555543322 1 245
Q ss_pred cccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCC
Q psy12680 57 CFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPD 136 (2567)
Q Consensus 57 CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD 136 (2567)
.+||+.++..+....+-. .+..... ..+=||+|-||. .|+..|++-+..+.+..|+
T Consensus 122 iidea~~l~~~~~~~Ll~-------~le~~~~------------~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~ 177 (355)
T TIGR02397 122 IIDEVHMLSKSAFNALLK-------TLEEPPE------------HVVFILATTEPH-----KIPATILSRCQRFDFKRIP 177 (355)
T ss_pred EEeChhhcCHHHHHHHHH-------HHhCCcc------------ceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCC
Confidence 679998887654333211 1111111 112256775553 6888899999999998898
Q ss_pred HHHHHHHHH
Q psy12680 137 YALISEIIV 145 (2567)
Q Consensus 137 ~~lIaEi~L 145 (2567)
..-+.+++.
T Consensus 178 ~~~l~~~l~ 186 (355)
T TIGR02397 178 LEDIVERLK 186 (355)
T ss_pred HHHHHHHHH
Confidence 888877764
No 267
>KOG0933|consensus
Probab=94.25 E-value=36 Score=47.81 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=43.6
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2331 YDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQ----NTLDAKKKELKDLQDELDLCVKKKQRAED 2406 (2567)
Q Consensus 2331 Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~----~~~~~~~~ek~~L~~~~~~~~~rl~rA~~ 2406 (2567)
|+.+...++-.++.+.+.++++.+.+..+..+++++..+|..+..-. ..+.+++++.+.++++++....++++++.
T Consensus 736 ~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~ 815 (1174)
T KOG0933|consen 736 FHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKREN 815 (1174)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455554444444444544444444333322 22344455555555555555555666666
Q ss_pred HHhhhhhhhccHHH
Q psy12680 2407 LIGKLGGEKERWSS 2420 (2567)
Q Consensus 2407 Li~~L~~Ek~RW~~ 2420 (2567)
....|..|.+--+.
T Consensus 816 e~e~l~lE~e~l~~ 829 (1174)
T KOG0933|consen 816 EYERLQLEHEELEK 829 (1174)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444333
No 268
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=94.23 E-value=0.064 Score=74.56 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=49.2
Q ss_pred EEEEEcCCC-CccccccCCCChHHHHHHHhhcccc-cccCcceeeee-eeeeeeeecCCCCCC----------CCCCcch
Q psy12680 1421 CVVFVDDVN-MPLKEEFGAQPPIEILRQWLDHWMW-YDRKDVVAVKL-IEIQLMCAMGPPSTG----------NTVTPRF 1487 (2567)
Q Consensus 1421 ~vvFiDDiN-mP~~d~yGtQ~~ielLRQlid~~g~-ydr~~~~~~~i-~diq~v~am~Ppggg----------~~is~Rf 1487 (2567)
-++++||++ ||..+. ..|-+.|+.+-. ..+ ......+ .++.++||+||.+|. -.+++-+
T Consensus 559 GtL~IDEidkms~~~Q-------~aLlEaMEqqtIsI~K-aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~L 630 (915)
T PTZ00111 559 GVCCIDELDKCHNESR-------LSLYEVMEQQTVTIAK-AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSL 630 (915)
T ss_pred CeEEecchhhCCHHHH-------HHHHHHHhCCEEEEec-CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHH
Confidence 488999998 554332 223334443221 010 0111122 478999999998764 1356778
Q ss_pred hcccccee--ccCCCHHHHHHHHHHHHHhh
Q psy12680 1488 SRHFNQIV--INKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1488 ~r~f~vi~--i~~p~~~sL~~If~~il~~~ 1515 (2567)
+..|-++. ++.|+.+.=..|=..|+..|
T Consensus 631 LSRFDLIf~l~D~~d~~~D~~lA~hI~~~~ 660 (915)
T PTZ00111 631 FTRFDLIYLVLDHIDQDTDQLISLSIAKDF 660 (915)
T ss_pred hhhhcEEEEecCCCChHHHHHHHHHHHHhh
Confidence 88886654 46777665555555555443
No 269
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=94.22 E-value=0.085 Score=70.55 Aligned_cols=95 Identities=22% Similarity=0.222 Sum_probs=62.6
Q ss_pred CCCCCCCCchhHHHHHHHHh----------------------------cCeEEEEeCCCCccHHHHHHhhhh--------
Q psy12680 5 PEGPAGTGKTETTKDLAKAV----------------------------AKLCIVFNCSDSMDYIGLGKFFKG-------- 48 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l----------------------------G~~~~vfNCs~~~d~~~m~rif~G-------- 48 (2567)
..||+|||||...+.++..+ .+|...-+|+-.. ..++-|
T Consensus 216 liG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~-----~~~~ggg~~~~pG~ 290 (499)
T TIGR00368 216 LFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASK-----PALVGGGPIPLPGE 290 (499)
T ss_pred EEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccch-----hhhhCCccccchhh
Confidence 47999999999999998643 1233333444321 111212
Q ss_pred --hhhcCccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCC
Q psy12680 49 --LIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPG 112 (2567)
Q Consensus 49 --l~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPg 112 (2567)
+|. |.-+|+||++.++.+++..+.|-+. .+.-.+.=.|..+....++-+..+|||.
T Consensus 291 i~lA~-~GvLfLDEi~e~~~~~~~~L~~~LE-------~~~v~i~r~g~~~~~pa~frlIaa~Npc 348 (499)
T TIGR00368 291 ISLAH-NGVLFLDELPEFKRSVLDALREPIE-------DGSISISRASAKIFYPARFQLVAAMNPC 348 (499)
T ss_pred hhccC-CCeEecCChhhCCHHHHHHHHHHHH-------cCcEEEEecCcceeccCCeEEEEecCCc
Confidence 222 3468999999999988888877553 2322333356667778899999999994
No 270
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.20 E-value=0.13 Score=65.81 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=79.9
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhhh------------------hhcCccccccccccC
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKGL------------------IATGAWACFDEFNRI 64 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~Gl------------------~q~GaW~CFDEfNri 64 (2567)
.|++||||+..++.+-..- +.+.+++||+.--+ ..+...+.|- +.+|. .++||++.|
T Consensus 35 ~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGt-L~l~~i~~L 112 (326)
T PRK11608 35 IGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGT-LFLDELATA 112 (326)
T ss_pred ECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccccccCCcccccCCchhccCCCe-EEeCChhhC
Confidence 5999999999888775443 46999999997443 4444433242 22333 799999999
Q ss_pred CchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCC---CCCCCchhhHhhccccccccCCCHH
Q psy12680 65 DVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGY---AGRSELPDNLKSLFRTVAMMVPDYA 138 (2567)
Q Consensus 65 ~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgY---aGRseLPdnLk~lFRpvam~~PD~~ 138 (2567)
+.++..-+...+.. ..+.-.|..-++..++-|.+|.|... .....+.+.|-..|-.+.+.+|..+
T Consensus 113 ~~~~Q~~L~~~l~~---------~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLR 180 (326)
T PRK11608 113 PMLVQEKLLRVIEY---------GELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLR 180 (326)
T ss_pred CHHHHHHHHHHHhc---------CcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChh
Confidence 99887777665542 12333344345555677888888653 2234465666666666677777654
No 271
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.19 E-value=0.3 Score=55.94 Aligned_cols=146 Identities=19% Similarity=0.211 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcc-----------cCCccEEEEEeccCCCCcCc
Q psy12680 349 PFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGE-----------LGEHKVEIIVINPKSITMGQ 417 (2567)
Q Consensus 349 ~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~-----------~~~~~v~~~~inPKait~~e 417 (2567)
+..++...+++..-...|.+++.||+|+||+++...+++++---..... ..+..-..+.++|..-..
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~-- 80 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK-- 80 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS--
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc--
Confidence 3445566677777788999999999999999999999998721110000 000111223333321110
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEec
Q psy12680 418 LYGQFDAVSHEWSDGILAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEP 496 (2567)
Q Consensus 418 LyG~~d~~T~EW~DGvls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv 496 (2567)
...-.-+-.+...+.... ....|-+|+|. +|..=.+.-|.+| |+|-= -|+++.||+=+
T Consensus 81 ----------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~-ad~l~~~a~NaLL---K~LEe-------pp~~~~fiL~t 139 (162)
T PF13177_consen 81 ----------SIKIDQIREIIEFLSLSPSEGKYKVIIIDE-ADKLTEEAQNALL---KTLEE-------PPENTYFILIT 139 (162)
T ss_dssp ----------SBSHHHHHHHHHHCTSS-TTSSSEEEEEET-GGGS-HHHHHHHH---HHHHS-------TTTTEEEEEEE
T ss_pred ----------hhhHHHHHHHHHHHHHHHhcCCceEEEeeh-HhhhhHHHHHHHH---HHhcC-------CCCCEEEEEEE
Confidence 121111112222222222 23578888874 6777777778877 22211 25689999999
Q ss_pred CCcCcCCcceeeeceeEEecC
Q psy12680 497 QDLEVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 497 ~dL~~ASPATVSRcGmVy~~~ 517 (2567)
+++...-|.-.|||=.|+|.+
T Consensus 140 ~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 140 NNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp S-GGGS-HHHHTTSEEEEE--
T ss_pred CChHHChHHHHhhceEEecCC
Confidence 999999999999999999875
No 272
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.18 E-value=0.15 Score=70.14 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=75.8
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEE-eccCCCCcCcccccccCCCCCCCcchHHHHHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIV-INPKSITMGQLYGQFDAVSHEWSDGILAVSYRQF 441 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~-inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~ 441 (2567)
++.|+.++.||+|+||||+.+.|++++.--.. .....++..+. ........-+ +|..++ ..-.-+-.+...+
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~--~~~~~pC~~C~~~~~~~~Dvie----idaasn-~~vd~IReLie~~ 110 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHK--TDLLEPCQECIENVNNSLDIIE----MDAASN-NGVDEIRELIENV 110 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhccccc--CCCCCchhHHHHhhcCCCcEEE----Eecccc-CCHHHHHHHHHHH
Confidence 45799999999999999999999999842110 00001111000 0000011101 122110 1111122232233
Q ss_pred HhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEecC
Q psy12680 442 AMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 442 ~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~~~ 517 (2567)
...+ ...++-+|+|. +|..=.+..|.+|.. |- .-|+++.+||-+.+....-|+-.|||-.|.|.+
T Consensus 111 ~~~P~~g~~KV~IIDE-a~~LT~~A~NALLKt-----LE-----EPP~~tifILaTte~~KLl~TI~SRcq~ieF~~ 176 (725)
T PRK07133 111 KNLPTQSKYKIYIIDE-VHMLSKSAFNALLKT-----LE-----EPPKHVIFILATTEVHKIPLTILSRVQRFNFRR 176 (725)
T ss_pred HhchhcCCCEEEEEEC-hhhCCHHHHHHHHHH-----hh-----cCCCceEEEEEcCChhhhhHHHHhhceeEEccC
Confidence 2222 24567888887 454444566666631 10 126788899988888877777799999999876
No 273
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=0.22 Score=64.84 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=85.1
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHHHHHHh-cccC----------CccEEEEEeccCC--CCcCcccccccCCCCCCC
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQLIEEW-GELG----------EHKVEIIVINPKS--ITMGQLYGQFDAVSHEWS 430 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~-~~~~----------~~~v~~~~inPKa--it~~eLyG~~d~~T~EW~ 430 (2567)
..|++++.||+|+|||++.+.+++++.--... ...| +..-.++.+.|.. +..++
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~------------- 101 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDE------------- 101 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHH-------------
Confidence 67999999999999999999999987311000 0000 1122344555532 11111
Q ss_pred cchHHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeee
Q psy12680 431 DGILAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSR 509 (2567)
Q Consensus 431 DGvls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSR 509 (2567)
+-.+++.+...+ ...++.+++|. +|..=.+.-|++|. + |- .-|+++-+|+=+++.....|+-+||
T Consensus 102 ---iR~l~~~~~~~p~~~~~kViiIDe-ad~m~~~aanaLLk---~--LE-----ep~~~~~fIL~a~~~~~llpTIrSR 167 (394)
T PRK07940 102 ---VRELVTIAARRPSTGRWRIVVIED-ADRLTERAANALLK---A--VE-----EPPPRTVWLLCAPSPEDVLPTIRSR 167 (394)
T ss_pred ---HHHHHHHHHhCcccCCcEEEEEec-hhhcCHHHHHHHHH---H--hh-----cCCCCCeEEEEECChHHChHHHHhh
Confidence 233444443332 34567888874 56555566666663 1 11 1256788999999998899999999
Q ss_pred ceeEEecCCCCchhhhHHhhhh
Q psy12680 510 CGMIYMEPATLGWECLVDSWLN 531 (2567)
Q Consensus 510 cGmVy~~~~~lgw~~~v~sWl~ 531 (2567)
|=.|+|.+-. ..-+..|+.
T Consensus 168 c~~i~f~~~~---~~~i~~~L~ 186 (394)
T PRK07940 168 CRHVALRTPS---VEAVAEVLV 186 (394)
T ss_pred CeEEECCCCC---HHHHHHHHH
Confidence 9999997643 223556765
No 274
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.13 E-value=0.087 Score=67.61 Aligned_cols=148 Identities=20% Similarity=0.262 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHH
Q psy12680 1323 NIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIM 1402 (2567)
Q Consensus 1323 ~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ie 1402 (2567)
..--+...-.++.|||+.|+|||||+.+.+... +.-... ..--.+.+||++.+..-..-.
T Consensus 90 ~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH---------------~~s~r~--~~~PFI~~NCa~~~en~~~~e--- 149 (403)
T COG1221 90 LREQIKAYAPSGLPVLIIGETGTGKELFARLIH---------------ALSARR--AEAPFIAFNCAAYSENLQEAE--- 149 (403)
T ss_pred HHHHHHhhCCCCCcEEEecCCCccHHHHHHHHH---------------Hhhhcc--cCCCEEEEEHHHhCcCHHHHH---
Confidence 333444566789999999999999997664321 110000 122468899999985543222
Q ss_pred hhhhcc-cCCccCCCCCcE--------EEEEEcCCCC-ccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeee
Q psy12680 1403 SKLDKR-RKGVYGPPLGKR--------CVVFVDDVNM-PLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMC 1472 (2567)
Q Consensus 1403 s~lekr-~~~~~gp~~gK~--------~vvFiDDiNm-P~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~ 1472 (2567)
|--. +|-..|+..+|. =++|.|+|.- |. +..+-|=.++|+|-|..... .-.--.|+.++|
T Consensus 150 --LFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~-------~~Q~kLl~~le~g~~~rvG~-~~~~~~dVRli~ 219 (403)
T COG1221 150 --LFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP-------EGQEKLLRVLEEGEYRRVGG-SQPRPVDVRLIC 219 (403)
T ss_pred --HhccccceeecccCCcCchheecCCCEEehhhhhhCCH-------hHHHHHHHHHHcCceEecCC-CCCcCCCceeee
Confidence 3322 222334332222 2567777652 21 23466667888777664333 223346888998
Q ss_pred ecCCCCCCCCCC-cchhccccceeccCCC
Q psy12680 1473 AMGPPSTGNTVT-PRFSRHFNQIVINKFD 1500 (2567)
Q Consensus 1473 am~Ppggg~~is-~Rf~r~f~vi~i~~p~ 1500 (2567)
|-+-..+...+. ..|.+..+++.+.-|+
T Consensus 220 AT~~~l~~~~~~g~dl~~rl~~~~I~LPp 248 (403)
T COG1221 220 ATTEDLEEAVLAGADLTRRLNILTITLPP 248 (403)
T ss_pred ccccCHHHHHHhhcchhhhhcCceecCCC
Confidence 876443221111 3555544444444343
No 275
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.12 E-value=0.31 Score=57.78 Aligned_cols=84 Identities=8% Similarity=0.056 Sum_probs=44.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEe-ccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcC
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVI-NPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQ 445 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~i-nPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~ 445 (2567)
-|+++|||||||||.++.|...+..- . ...+..+ +|-......-.+.+.-..-.+....++..+|.+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~-----~---~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~- 73 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN-----K---THHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ- 73 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc-----C---CcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC-
Confidence 37899999999999999887765310 0 1111111 222211111111111000122234466666665432
Q ss_pred CCCceEEEeCCCCCHH
Q psy12680 446 NENRKWLIFDGPVDAI 461 (2567)
Q Consensus 446 ~~~~~WivfDGpVDa~ 461 (2567)
+..+|++|=+-|.+
T Consensus 74 --~pd~ii~gEird~e 87 (198)
T cd01131 74 --DPDVILVGEMRDLE 87 (198)
T ss_pred --CcCEEEEcCCCCHH
Confidence 34699999988875
No 276
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.06 E-value=0.12 Score=67.80 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCCCCCCCchhHHHHHHHHhcCe------------------------EEEEeCCCCccHHHHHHhhhhhh---hcCcc--
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKL------------------------CIVFNCSDSMDYIGLGKFFKGLI---ATGAW-- 55 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~------------------------~~vfNCs~~~d~~~m~rif~Gl~---q~GaW-- 55 (2567)
..||.|||||.+++.||++|++. ++.+|.........+-.+...+. ..|-|
T Consensus 45 f~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV 124 (484)
T PRK14956 45 FFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKV 124 (484)
T ss_pred EECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEE
Confidence 47999999999999999999862 34445444333444444433332 22323
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEE--EEeCCCCCCCCCchhhHhhcccccccc
Q psy12680 56 ACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVF--ITMNPGYAGRSELPDNLKSLFRTVAMM 133 (2567)
Q Consensus 56 ~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iF--iTmNPgYaGRseLPdnLk~lFRpvam~ 133 (2567)
..+||+++|+.+...++ +.++ ... |...+| +|=+ ...||..+++=+..+.+-
T Consensus 125 ~IIDEah~Ls~~A~NAL---LKtL----EEP--------------p~~viFILaTte-----~~kI~~TI~SRCq~~~f~ 178 (484)
T PRK14956 125 YIIDEVHMLTDQSFNAL---LKTL----EEP--------------PAHIVFILATTE-----FHKIPETILSRCQDFIFK 178 (484)
T ss_pred EEEechhhcCHHHHHHH---HHHh----hcC--------------CCceEEEeecCC-----hhhccHHHHhhhheeeec
Confidence 56788888887654443 2222 111 222333 4433 247999999987778888
Q ss_pred CCCHHHHHHHH
Q psy12680 134 VPDYALISEII 144 (2567)
Q Consensus 134 ~PD~~lIaEi~ 144 (2567)
.++...|.+.+
T Consensus 179 ~ls~~~i~~~L 189 (484)
T PRK14956 179 KVPLSVLQDYS 189 (484)
T ss_pred CCCHHHHHHHH
Confidence 88877776654
No 277
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=94.05 E-value=0.24 Score=68.40 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCCCCCCchhHHHHHHHHh----------cCeEEEEeCCCC-ccHHHHHHhh---------hh----hhh----------
Q psy12680 6 EGPAGTGKTETTKDLAKAV----------AKLCIVFNCSDS-MDYIGLGKFF---------KG----LIA---------- 51 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l----------G~~~~vfNCs~~-~d~~~m~rif---------~G----l~q---------- 51 (2567)
.||.|||||..++.+.+.. +.+.+.+||+.- .|...+...+ .| ++.
T Consensus 181 ~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~ 260 (615)
T TIGR02903 181 YGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGL 260 (615)
T ss_pred ECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCc
Confidence 6999999999999987665 346789999762 3333321111 11 121
Q ss_pred ----cCccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEE----------------eeCceeEEE--Ee
Q psy12680 52 ----TGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILK----------------LDRTCSVFI--TM 109 (2567)
Q Consensus 52 ----~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~----------------l~~~~~iFi--Tm 109 (2567)
+|.=.++||+++|+.+....+...+.. .++.|.+.... -.+..-++| |-
T Consensus 261 v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~---------~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt 331 (615)
T TIGR02903 261 VTDAHGGVLFIDEIGELDPLLQNKLLKVLED---------KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT 331 (615)
T ss_pred hhhcCCCeEEEeccccCCHHHHHHHHHHHhh---------CeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc
Confidence 233579999999998876665555542 23333222111 012212222 33
Q ss_pred CCCCCCCCCchhhHhhccccccccCCCHHHHHHHH
Q psy12680 110 NPGYAGRSELPDNLKSLFRTVAMMVPDYALISEII 144 (2567)
Q Consensus 110 NPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~ 144 (2567)
|. ..++|+-|++-|..+.+...+..-|.++.
T Consensus 332 ~~----~~~l~~aLrSR~~~i~~~pls~edi~~Il 362 (615)
T TIGR02903 332 RD----PEEINPALRSRCAEVFFEPLTPEDIALIV 362 (615)
T ss_pred cc----ccccCHHHHhceeEEEeCCCCHHHHHHHH
Confidence 31 23688889998887776666655555553
No 278
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.04 E-value=0.19 Score=67.32 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=77.8
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc--C----------CccEEEEEeccCCCCcCcccccccCCCCCCC
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL--G----------EHKVEIIVINPKSITMGQLYGQFDAVSHEWS 430 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~--~----------~~~v~~~~inPKait~~eLyG~~d~~T~EW~ 430 (2567)
...|..++.||+|+||||+.+.|++++.--...+.. + +....++.+| ..+.
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld--------------aas~--- 96 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD--------------AASN--- 96 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec--------------cccc---
Confidence 457899999999999999999999997310000000 0 0011111222 1110
Q ss_pred cchHHHHHHHHHhc-----CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcc
Q psy12680 431 DGILAVSYRQFAMS-----QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPA 505 (2567)
Q Consensus 431 DGvls~i~R~~~~~-----~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPA 505 (2567)
-|+ .-+|+.+.. ....++-+|+|. +|..--+..|.+|- +|- ..|+++.|||=+.|....-|+
T Consensus 97 ~gI--d~IRelie~~~~~P~~~~~KVvIIDE-ad~Lt~~A~NALLK-----~LE-----Epp~~t~FIL~ttd~~kL~~t 163 (535)
T PRK08451 97 RGI--DDIRELIEQTKYKPSMARFKIFIIDE-VHMLTKEAFNALLK-----TLE-----EPPSYVKFILATTDPLKLPAT 163 (535)
T ss_pred cCH--HHHHHHHHHHhhCcccCCeEEEEEEC-cccCCHHHHHHHHH-----HHh-----hcCCceEEEEEECChhhCchH
Confidence 122 234554422 124568889998 46666666666542 111 137789999999998888889
Q ss_pred eeeeceeEEecCC
Q psy12680 506 TVSRCGMIYMEPA 518 (2567)
Q Consensus 506 TVSRcGmVy~~~~ 518 (2567)
-.|||-++.|.+-
T Consensus 164 I~SRc~~~~F~~L 176 (535)
T PRK08451 164 ILSRTQHFRFKQI 176 (535)
T ss_pred HHhhceeEEcCCC
Confidence 9999999999864
No 279
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.01 E-value=0.73 Score=61.86 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=50.8
Q ss_pred ccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccc
Q psy12680 1412 VYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF 1491 (2567)
Q Consensus 1412 ~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f 1491 (2567)
.|.|..|++-|+++|+++|-..+. ..+||+-+ +.- -.++.|+.+.+.+ ..+.+.+.+.+
T Consensus 112 ~~~P~~~~~KVvIIDEad~Lt~~a-----~naLLk~L-Eep------------p~~~v~Il~tt~~---~kl~~tI~SRc 170 (486)
T PRK14953 112 SYTPIKGKYKVYIIDEAHMLTKEA-----FNALLKTL-EEP------------PPRTIFILCTTEY---DKIPPTILSRC 170 (486)
T ss_pred HhCcccCCeeEEEEEChhhcCHHH-----HHHHHHHH-hcC------------CCCeEEEEEECCH---HHHHHHHHHhc
Confidence 356778899999999988765432 23444443 321 0123344433321 23555677777
Q ss_pred cceeccCCCHHHHHHHHHHHHH
Q psy12680 1492 NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1492 ~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.++.+..++.+.+......++.
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~k 192 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRICN 192 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHHH
Confidence 8888999999999888877664
No 280
>PRK08233 hypothetical protein; Provisional
Probab=93.99 E-value=0.069 Score=61.96 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|.|+|||||||..+.|++++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 346788999999999999999987
No 281
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.98 E-value=0.13 Score=70.45 Aligned_cols=134 Identities=21% Similarity=0.308 Sum_probs=72.3
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEE----Eecc-CCCCcCcccccccCCCCCCCcch--HH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEII----VINP-KSITMGQLYGQFDAVSHEWSDGI--LA 435 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~----~inP-Kait~~eLyG~~d~~T~EW~DGv--ls 435 (2567)
++.|..++.||+|+||||+.+.|++++.--.. . +..+.-.+ .|.. .+...-++ |..+. -|| +-
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~--~-~~~~c~~c~~c~~i~~g~~~d~~ei----d~~s~---~~v~~ir 105 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNCEQG--L-TAEPCNVCPPCVEITEGRSVDVFEI----DGASN---TGVDDIR 105 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC--C-CCCCCCccHHHHHHhcCCCCCeeee----eccCc---cCHHHHH
Confidence 46899999999999999999999999842100 0 00000000 0000 00111111 11110 111 11
Q ss_pred HHHHHHHhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEE
Q psy12680 436 VSYRQFAMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIY 514 (2567)
Q Consensus 436 ~i~R~~~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy 514 (2567)
.+...+... .....+-+|+|. +|-.=.+..|.+|- +|-+ -|+++.|||=+.+.....|+-.|||-.|.
T Consensus 106 ~l~~~~~~~p~~~~~KVvIIde-v~~Lt~~a~naLLk-----~LEe-----pp~~~~fIl~t~~~~kl~~tI~SRc~~~~ 174 (576)
T PRK14965 106 ELRENVKYLPSRSRYKIFIIDE-VHMLSTNAFNALLK-----TLEE-----PPPHVKFIFATTEPHKVPITILSRCQRFD 174 (576)
T ss_pred HHHHHHHhccccCCceEEEEEC-hhhCCHHHHHHHHH-----HHHc-----CCCCeEEEEEeCChhhhhHHHHHhhhhhh
Confidence 122222212 234567888887 34333344444441 1110 26789999999888877777799999998
Q ss_pred ecC
Q psy12680 515 MEP 517 (2567)
Q Consensus 515 ~~~ 517 (2567)
|.+
T Consensus 175 f~~ 177 (576)
T PRK14965 175 FRR 177 (576)
T ss_pred cCC
Confidence 875
No 282
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.97 E-value=0.099 Score=70.42 Aligned_cols=123 Identities=15% Similarity=0.267 Sum_probs=69.6
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc---C----------CccEEEEEeccCCCCcCcccccccCCCCCC
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL---G----------EHKVEIIVINPKSITMGQLYGQFDAVSHEW 429 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~---~----------~~~v~~~~inPKait~~eLyG~~d~~T~EW 429 (2567)
.+.|++++.||+|+||||+.+.+++++.-.. +... + +.+..++.+++ . +
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-~~~~~~Cg~C~sCr~i~~~~h~DiieIda--------------a---s 97 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN-PKDGDCCNSCSVCESINTNQSVDIVELDA--------------A---S 97 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHHcCCCCceEEecc--------------c---c
Confidence 4579999999999999999999999984211 0000 0 00111122222 1 1
Q ss_pred Ccch--HHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhh---cCCceeEecccceeecCCCCeEEEecCCcCcCC
Q psy12680 430 SDGI--LAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVL---DDNKKLCLMSGEIIALAPTTSLIFEPQDLEVAS 503 (2567)
Q Consensus 430 ~DGv--ls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVL---DDNK~LtL~nGErI~l~~~~~llFEv~dL~~AS 503 (2567)
.-|| +-.+...+...+ ...++-+|+|. +|..=.+..|.+| ++ .|+++.+||=+.+....-
T Consensus 98 ~igVd~IReIi~~~~~~P~~~~~KVIIIDE-ad~Lt~~A~NaLLKtLEE-------------Pp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 98 NNGVDEIRNIIDNINYLPTTFKYKVYIIDE-AHMLSTSAWNALLKTLEE-------------PPKHVVFIFATTEFQKIP 163 (605)
T ss_pred ccCHHHHHHHHHHHHhchhhCCcEEEEEec-hHhCCHHHHHHHHHHHHh-------------CCCcEEEEEECCChHhhh
Confidence 2232 122222222221 23467888886 3322223334444 32 255677777777777777
Q ss_pred cceeeeceeEEecC
Q psy12680 504 PATVSRCGMIYMEP 517 (2567)
Q Consensus 504 PATVSRcGmVy~~~ 517 (2567)
|+-.|||-.+.|.+
T Consensus 164 ~TI~SRcq~ieF~~ 177 (605)
T PRK05896 164 LTIISRCQRYNFKK 177 (605)
T ss_pred HHHHhhhhhcccCC
Confidence 77799999998875
No 283
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.95 E-value=0.13 Score=70.21 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=44.3
Q ss_pred CCcEEEEEEcCCCCccccccCCCChHHHHH-HHhhcccccccCcceeeeeeeeeeeeecC--CCCCCCC----------C
Q psy12680 1417 LGKRCVVFVDDVNMPLKEEFGAQPPIEILR-QWLDHWMWYDRKDVVAVKLIEIQLMCAMG--PPSTGNT----------V 1483 (2567)
Q Consensus 1417 ~gK~~vvFiDDiNmP~~d~yGtQ~~ielLR-Qlid~~g~ydr~~~~~~~i~diq~v~am~--Ppggg~~----------i 1483 (2567)
.+++.|||+||+-. .-..+++...++|| .+.+.+ .+-+|++++ |-++.+. +
T Consensus 193 ~~~~~IILIDEiPn--~~~r~~~~lq~lLr~~~~e~~--------------~~pLI~I~TE~~~~~~~~~~~~f~~~~lL 256 (637)
T TIGR00602 193 MTDKKIILVEDLPN--QFYRDTRALHEILRWKYVSIG--------------RCPLVFIITESLEGDNNQRRLLFPAETIM 256 (637)
T ss_pred CCceeEEEeecchh--hchhhHHHHHHHHHHHhhcCC--------------CceEEEEecCCccccccccccccchhccc
Confidence 46788999999832 12224444445566 443321 133444444 3333222 1
Q ss_pred Ccchhcccc--ceeccCCCHHHHHHHHHHHHH
Q psy12680 1484 TPRFSRHFN--QIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1484 s~Rf~r~f~--vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.++.|-. +|.+++.....|......|+.
T Consensus 257 ~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 257 NKEILEEPRVSNISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred CHhHhcccceeEEEeCCCCHHHHHHHHHHHHH
Confidence 244554433 477888888887777776664
No 284
>PRK06217 hypothetical protein; Validated
Probab=93.94 E-value=0.059 Score=62.94 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=20.8
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+|+|||||||+-+.|++.+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999876
No 285
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.16 Score=69.36 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=73.6
Q ss_pred CCCCCCCCchhHHHHHHHHhcCe-----------------------------EEEEeCCCCccHHHHHHhhhhhhhcC--
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKL-----------------------------CIVFNCSDSMDYIGLGKFFKGLIATG-- 53 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~-----------------------------~~vfNCs~~~d~~~m~rif~Gl~q~G-- 53 (2567)
..||.|||||++.+.|||.|.+. ++.+|.+.......+-.++..+....
T Consensus 43 f~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~ 122 (618)
T PRK14951 43 FTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQ 122 (618)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCccc
Confidence 36999999999999999999641 34445554455555555555433222
Q ss_pred ---ccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccc
Q psy12680 54 ---AWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTV 130 (2567)
Q Consensus 54 ---aW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpv 130 (2567)
-..++||..+|+.+....+ +. .+...... .+-||+|-+|. .+|..+++=...+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaL---LK----tLEEPP~~------------~~fIL~Ttd~~-----kil~TIlSRc~~~ 178 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAM---LK----TLEEPPEY------------LKFVLATTDPQ-----KVPVTVLSRCLQF 178 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHH---HH----hcccCCCC------------eEEEEEECCch-----hhhHHHHHhceee
Confidence 3678888888877652211 11 11111111 12356775654 4777799988999
Q ss_pred cccCCCHHHHHHHHH
Q psy12680 131 AMMVPDYALISEIIV 145 (2567)
Q Consensus 131 am~~PD~~lIaEi~L 145 (2567)
.+-.++..-|.+.+-
T Consensus 179 ~f~~Ls~eei~~~L~ 193 (618)
T PRK14951 179 NLRPMAPETVLEHLT 193 (618)
T ss_pred ecCCCCHHHHHHHHH
Confidence 999988887776653
No 286
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.19 Score=67.51 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=72.5
Q ss_pred CCCCCCCCchhHHHHHHHHhcCe-----------------------EEEEeCCCCccHHHHHHhhhhhhh-----cCccc
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKL-----------------------CIVFNCSDSMDYIGLGKFFKGLIA-----TGAWA 56 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~-----------------------~~vfNCs~~~d~~~m~rif~Gl~q-----~GaW~ 56 (2567)
..||.|||||.+++.||+++.+. ++.+|.++......+-.+..-+.. ..-..
T Consensus 41 f~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVV 120 (504)
T PRK14963 41 FSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVY 120 (504)
T ss_pred EECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEE
Confidence 36999999999999999999541 556677655555544443222222 12355
Q ss_pred cccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCC
Q psy12680 57 CFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPD 136 (2567)
Q Consensus 57 CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD 136 (2567)
.+||..++..+.+..+ +. .+......+ +-||+|=+| ..++.-+++-++.+.+..|+
T Consensus 121 IIDEad~ls~~a~naL---Lk----~LEep~~~t------------~~Il~t~~~-----~kl~~~I~SRc~~~~f~~ls 176 (504)
T PRK14963 121 ILDEAHMMSKSAFNAL---LK----TLEEPPEHV------------IFILATTEP-----EKMPPTILSRTQHFRFRRLT 176 (504)
T ss_pred EEECccccCHHHHHHH---HH----HHHhCCCCE------------EEEEEcCCh-----hhCChHHhcceEEEEecCCC
Confidence 6788887765544333 21 222211111 123444222 57888899888999999999
Q ss_pred HHHHHHHHH
Q psy12680 137 YALISEIIV 145 (2567)
Q Consensus 137 ~~lIaEi~L 145 (2567)
..-|.+.+.
T Consensus 177 ~~el~~~L~ 185 (504)
T PRK14963 177 EEEIAGKLR 185 (504)
T ss_pred HHHHHHHHH
Confidence 888777754
No 287
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=0.13 Score=65.28 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=85.2
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhc---ccC----------CccEEEEEeccCCCCcCcccccccCCCCCC
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWG---ELG----------EHKVEIIVINPKSITMGQLYGQFDAVSHEW 429 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~---~~~----------~~~v~~~~inPKait~~eLyG~~d~~T~EW 429 (2567)
++.|+.++.||+|+|||++.+.+++++.--.... ..| +.+-.++.+.|-+-. ...+..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~---------~~~g~~ 89 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE---------PENGRK 89 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc---------cccccc
Confidence 7889999999999999999999999973101000 000 122345667773200 000111
Q ss_pred CcchHHHHHHHHH----hcCC-CCceEEEeCCCCCHH---HHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCc
Q psy12680 430 SDGILAVSYRQFA----MSQN-ENRKWLIFDGPVDAI---WIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEV 501 (2567)
Q Consensus 430 ~DGvls~i~R~~~----~~~~-~~~~WivfDGpVDa~---WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ 501 (2567)
+.-|--.-+|+.. ..+. ..++.+ +|-|+|.. ....|-..|.+- ++++.+|+=+++...
T Consensus 90 ~~~I~id~iR~l~~~~~~~p~~~~~kV~-iiEp~~~Ld~~a~naLLk~LEep-------------~~~~~~Ilvth~~~~ 155 (325)
T PRK08699 90 LLQIKIDAVREIIDNVYLTSVRGGLRVI-LIHPAESMNLQAANSLLKVLEEP-------------PPQVVFLLVSHAADK 155 (325)
T ss_pred CCCcCHHHHHHHHHHHhhCcccCCceEE-EEechhhCCHHHHHHHHHHHHhC-------------cCCCEEEEEeCChHh
Confidence 1112222345432 2222 344555 45677555 444444444331 356789999999999
Q ss_pred CCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 502 ASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 502 ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
..|+-.|||=.+.|.+-. ..-+..||..
T Consensus 156 ll~ti~SRc~~~~~~~~~---~~~~~~~L~~ 183 (325)
T PRK08699 156 VLPTIKSRCRKMVLPAPS---HEEALAYLRE 183 (325)
T ss_pred ChHHHHHHhhhhcCCCCC---HHHHHHHHHh
Confidence 988889999999998632 3345667754
No 288
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.85 E-value=0.06 Score=62.68 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+++|||||||||.-+.|++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999876
No 289
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.85 E-value=27 Score=44.87 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2078 QLLKVKQEEVLNGKNRYTVGLE----KLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEA 2143 (2567)
Q Consensus 2078 ~ll~~k~~el~~~~~rl~~GL~----KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a 2143 (2567)
..+.+|..+++...++|++... |..+---.+++|+.+++.+..+++..+...+.+..+++++....
T Consensus 298 ~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~ 367 (622)
T COG5185 298 KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIST 367 (622)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCH
Confidence 3344555555555555554333 22223334566666666666666666666666666666654433
No 290
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.82 E-value=34 Score=45.99 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccH
Q psy12680 2339 GPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERW 2418 (2567)
Q Consensus 2339 ~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW 2418 (2567)
+-.+.++.++..++..+...|++.+.+.+.++.+|...++.-. -..-+...++...+..+..|++=-..|..|+.-=
T Consensus 367 e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~---vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL 443 (546)
T PF07888_consen 367 EADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNR---VQLSENRRELQELKSSLRVAQKEKEQLQEEKQEL 443 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666555555555555544332111 1122222223333333334444344455555555
Q ss_pred HHHHHHHHHHhhcc
Q psy12680 2419 SSTAKMLNEKYYQL 2432 (2567)
Q Consensus 2419 ~~~~~~l~~~~~~l 2432 (2567)
...+..|+.++..+
T Consensus 444 ~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 444 LEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555544
No 291
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=93.79 E-value=0.38 Score=63.03 Aligned_cols=172 Identities=13% Similarity=0.216 Sum_probs=107.3
Q ss_pred cceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccc
Q psy12680 1311 NQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSA 1390 (2567)
Q Consensus 1311 ~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa 1390 (2567)
.+++--.+-..+....+..+-....|||+.|++||||-...++..... +..+=-++.+||.|
T Consensus 141 ~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S------------------~R~~~PFVavNcaA 202 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQAS------------------PRAKGPFIAVNCAA 202 (464)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC------------------cccCCCceeeeccc
Confidence 345556677778888899999999999999999999998776432110 11122367899988
Q ss_pred ccCHHHHHHHHHhhhhcccCCccCCCCCc---------EEEEEEcCCC-CccccccCCCChHHHHHHHhhcccccccCcc
Q psy12680 1391 QTSANQTQDIIMSKLDKRRKGVYGPPLGK---------RCVVFVDDVN-MPLKEEFGAQPPIEILRQWLDHWMWYDRKDV 1460 (2567)
Q Consensus 1391 ~Tts~~~q~~ies~lekr~~~~~gp~~gK---------~~vvFiDDiN-mP~~d~yGtQ~~ielLRQlid~~g~ydr~~~ 1460 (2567)
-+ .+++||-|.-.-+|.|--+..+ .-.+|+|+|. ||..-+ .-|||-+-+ +-|......
T Consensus 203 ip-----~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q------~kLLRvLqe-~~~~rvG~~ 270 (464)
T COG2204 203 IP-----ENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQ------VKLLRVLQE-REFERVGGN 270 (464)
T ss_pred CC-----HHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHH------HHHHHHHHc-CeeEecCCC
Confidence 77 5678888887666554433322 2467888875 432211 246776654 333322111
Q ss_pred eeeee-eeeeeeeecCCCCC----CCCCCcchhccccceeccCCCH----HHHHHHHHHHHHh
Q psy12680 1461 VAVKL-IEIQLMCAMGPPST----GNTVTPRFSRHFNQIVINKFDD----DTMVTIFSKILLW 1514 (2567)
Q Consensus 1461 ~~~~i-~diq~v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p~~----~sL~~If~~il~~ 1514 (2567)
+.+ +|+.++||.+-+-. .+..-+.+...+|++.+.-|+- +.+--++..++..
T Consensus 271 --~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~ 331 (464)
T COG2204 271 --KPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKR 331 (464)
T ss_pred --cccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHH
Confidence 122 58999999886521 1234456777788888776654 4444555554443
No 292
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.78 E-value=0.065 Score=70.87 Aligned_cols=79 Identities=9% Similarity=0.194 Sum_probs=46.3
Q ss_pred eeEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCCCcCcccccccc---eeee
Q psy12680 932 RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN---QIVI 1008 (2567)
Q Consensus 932 ~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~~i~~r~~r~f~---~~~~ 1008 (2567)
.-+++|||+..-....+ ..|.+-.+++. .|+.+ ...++++-.+|..-..+.+|+.+.|. ++-+
T Consensus 203 ~dvLiIDDiq~l~~k~~----~qeelf~l~N~--l~~~~--------k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l 268 (445)
T PRK12422 203 VDALFIEDIEVFSGKGA----TQEEFFHTFNS--LHTEG--------KLIVISSTCAPQDLKAMEERLISRFEWGIAIPL 268 (445)
T ss_pred CCEEEEcchhhhcCChh----hHHHHHHHHHH--HHHCC--------CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEec
Confidence 34899999876432222 22333333221 11111 12445555667655678899999894 6678
Q ss_pred ccCCchhhHHHHHHHH
Q psy12680 1009 NKFDDDTMVTIFSKIL 1024 (2567)
Q Consensus 1009 ~~~~~~~l~~i~~~~l 1024 (2567)
..|+.+++..|.....
T Consensus 269 ~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 269 HPLTKEGLRSFLERKA 284 (445)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8898888877665544
No 293
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.098 Score=70.39 Aligned_cols=135 Identities=20% Similarity=0.266 Sum_probs=85.0
Q ss_pred HHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccC-----------------CccEEEEEeccCCCCcCc
Q psy12680 355 IQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELG-----------------EHKVEIIVINPKSITMGQ 417 (2567)
Q Consensus 355 v~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~-----------------~~~v~~~~inPKait~~e 417 (2567)
..+.++.-+..|.+++.||+|+||||+.+.|+++|.--...+..+ +....++.||+.
T Consensus 28 L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa------ 101 (700)
T PRK12323 28 LTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA------ 101 (700)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccc------
Confidence 334444455689999999999999999999999985210000000 011122233332
Q ss_pred ccccccCCCCCCCcch--HHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEE
Q psy12680 418 LYGQFDAVSHEWSDGI--LAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIF 494 (2567)
Q Consensus 418 LyG~~d~~T~EW~DGv--ls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llF 494 (2567)
+ .-|| +-.++.+..... ....|-+|+|- +|..=.+..|.+|. +|-= =|.++.|||
T Consensus 102 --------s---~~gVDdIReLie~~~~~P~~gr~KViIIDE-ah~Ls~~AaNALLK---TLEE-------PP~~v~FIL 159 (700)
T PRK12323 102 --------S---NRGVDEMAQLLDKAVYAPTAGRFKVYMIDE-VHMLTNHAFNAMLK---TLEE-------PPEHVKFIL 159 (700)
T ss_pred --------c---cCCHHHHHHHHHHHHhchhcCCceEEEEEC-hHhcCHHHHHHHHH---hhcc-------CCCCceEEE
Confidence 1 1232 122333322222 33467888885 77777788888873 2221 256899999
Q ss_pred ecCCcCcCCcceeeeceeEEecC
Q psy12680 495 EPQDLEVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 495 Ev~dL~~ASPATVSRcGmVy~~~ 517 (2567)
=+++.....|.-.|||=.+.|.+
T Consensus 160 aTtep~kLlpTIrSRCq~f~f~~ 182 (700)
T PRK12323 160 ATTDPQKIPVTVLSRCLQFNLKQ 182 (700)
T ss_pred EeCChHhhhhHHHHHHHhcccCC
Confidence 99999999999999998888875
No 294
>KOG4360|consensus
Probab=93.76 E-value=1.7 Score=55.66 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=42.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2094 YTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEA 2143 (2567)
Q Consensus 2094 l~~GL~KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a 2143 (2567)
|..-+..|.+|+.+|..++++|..+-.+|.+-.+++-.++.+|-..+++.
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~ 249 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKI 249 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33677889999999999999999999999999999999888886655544
No 295
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.74 E-value=0.3 Score=60.34 Aligned_cols=150 Identities=21% Similarity=0.357 Sum_probs=85.3
Q ss_pred CCccChHHHHHHHHHHHHHHhceE-EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccc
Q psy12680 344 NLQVTPFFLEKIQQIYEMMIVRWG-FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQF 422 (2567)
Q Consensus 344 ~l~~~~~~i~Kv~QLye~~~~rhG-vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~ 422 (2567)
+|..-++-+.-+..+.-.+....| .+|||.+||||.|+.+ |+.-+. ..+.+.+. ++. =||.
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~r-Laa~i~-----------~~~~~~i~---~~~--~y~~- 70 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLAR-LAAFIC-----------GYEVFQIE---ITK--GYSI- 70 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHH-HHHHHT-----------TEEEE-TT---TST--TTHH-
T ss_pred ceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHH-HHHHHh-----------ccceEEEE---eeC--CcCH-
Confidence 344444445555555555543222 4799999999999987 443331 22333222 222 2663
Q ss_pred cCCCCCCCcchHHHHHHHHHhcCCCCceEEEeCCCC-CHHHHHHHHhhhcCCceeEecccce----------------e-
Q psy12680 423 DAVSHEWSDGILAVSYRQFAMSQNENRKWLIFDGPV-DAIWIENMNSVLDDNKKLCLMSGEI----------------I- 484 (2567)
Q Consensus 423 d~~T~EW~DGvls~i~R~~~~~~~~~~~WivfDGpV-Da~WIEnLNSVLDDNK~LtL~nGEr----------------I- 484 (2567)
.+|++-+=.. +++++-. +.....++=|-.+ |...+|.+|++|..+-+--|-++|= +
T Consensus 71 ----~~f~~dLk~~-~~~ag~~-~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~ 144 (268)
T PF12780_consen 71 ----KDFKEDLKKA-LQKAGIK-GKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGIS 144 (268)
T ss_dssp ----HHHHHHHHHH-HHHHHCS--S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--
T ss_pred ----HHHHHHHHHH-HHHHhcc-CCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCC
Confidence 4587776544 4444332 2333455556544 7889999999998776654444430 0
Q ss_pred ------------ecCCCCeEEEecCCcC-------cCCcceeeeceeEEecC
Q psy12680 485 ------------ALAPTTSLIFEPQDLE-------VASPATVSRCGMIYMEP 517 (2567)
Q Consensus 485 ------------~l~~~~~llFEv~dL~-------~ASPATVSRcGmVy~~~ 517 (2567)
+...|+++++=++... ...||-+++|.|.|+++
T Consensus 145 ~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~ 196 (268)
T PF12780_consen 145 DSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDP 196 (268)
T ss_dssp SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES
T ss_pred CchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCc
Confidence 1346777777544322 45799999999999985
No 296
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.73 E-value=0.035 Score=73.54 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=47.4
Q ss_pred EEEeccCCCCcccccCCC-ChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCCCcCcccccccc---eeeec
Q psy12680 934 VVFVDDVNMPLKEEFGAQ-PPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN---QIVIN 1009 (2567)
Q Consensus 934 ~~fiDD~nmp~~~~~g~q-~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~~i~~r~~r~f~---~~~~~ 1009 (2567)
+++|||+..-. ++.++| .-.++++.+.+.|. ..++++-.+|..-..+.+|+.+.|. ++.+.
T Consensus 197 vLlIDDi~~l~-~~~~~q~elf~~~n~l~~~~k--------------~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~ 261 (440)
T PRK14088 197 VLLIDDVQFLI-GKTGVQTELFHTFNELHDSGK--------------QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE 261 (440)
T ss_pred EEEEechhhhc-CcHHHHHHHHHHHHHHHHcCC--------------eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeC
Confidence 89999998542 222333 22333444444332 1344444666654567788888787 77899
Q ss_pred cCCchhhHHHHHHHHh
Q psy12680 1010 KFDDDTMVTIFSKILL 1025 (2567)
Q Consensus 1010 ~~~~~~l~~i~~~~l~ 1025 (2567)
.|+.++...|......
T Consensus 262 ~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 262 PPDEETRKKIARKMLE 277 (440)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999998888766543
No 297
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.72 E-value=0.18 Score=67.81 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=71.8
Q ss_pred CCCCCCCCchhHHHHHHHHhcCe------------------------EEEEeCCCCccHHHHHHhhhhhhhc---C--cc
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKL------------------------CIVFNCSDSMDYIGLGKFFKGLIAT---G--AW 55 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~------------------------~~vfNCs~~~d~~~m~rif~Gl~q~---G--aW 55 (2567)
..||.|||||.+.+.|||.|.+. ++-+|.+.......+-.+...+... | -.
T Consensus 43 f~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV 122 (509)
T PRK14958 43 FTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKV 122 (509)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEE
Confidence 46999999999999999999642 3445555555555566665554332 2 25
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCC
Q psy12680 56 ACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVP 135 (2567)
Q Consensus 56 ~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~P 135 (2567)
..+||+.+|..+...++- .++ ..-.+.+ +=||+|-+| ..+|..+++=...+.+-.+
T Consensus 123 ~iIDE~~~ls~~a~naLL---k~L----Eepp~~~------------~fIlattd~-----~kl~~tI~SRc~~~~f~~l 178 (509)
T PRK14958 123 YLIDEVHMLSGHSFNALL---KTL----EEPPSHV------------KFILATTDH-----HKLPVTVLSRCLQFHLAQL 178 (509)
T ss_pred EEEEChHhcCHHHHHHHH---HHH----hccCCCe------------EEEEEECCh-----HhchHHHHHHhhhhhcCCC
Confidence 567888887765432221 111 1111112 235677554 3578889888888888877
Q ss_pred CHHHHHHHH
Q psy12680 136 DYALISEII 144 (2567)
Q Consensus 136 D~~lIaEi~ 144 (2567)
...-|.+.+
T Consensus 179 ~~~~i~~~l 187 (509)
T PRK14958 179 PPLQIAAHC 187 (509)
T ss_pred CHHHHHHHH
Confidence 777666553
No 298
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.69 E-value=0.29 Score=62.02 Aligned_cols=168 Identities=15% Similarity=0.182 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcc------cCCccEEEEEeccCCCCcCccccccc
Q psy12680 350 FFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGE------LGEHKVEIIVINPKSITMGQLYGQFD 423 (2567)
Q Consensus 350 ~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~------~~~~~v~~~~inPKait~~eLyG~~d 423 (2567)
..+....+..+.=.+.|+.++.||.|+||++....+++++---..-+. ..+.+-..+.+.|-....+++.-.-+
T Consensus 11 ~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~ 90 (314)
T PRK07399 11 LAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASE 90 (314)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhh
Confidence 334444445555556799999999999999999999998731000000 01112234556664333222211000
Q ss_pred CCC---CCCCcc-hHHHHHHHHH----hc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEE
Q psy12680 424 AVS---HEWSDG-ILAVSYRQFA----MS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIF 494 (2567)
Q Consensus 424 ~~T---~EW~DG-vls~i~R~~~----~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llF 494 (2567)
... .+..-+ |--.-+|+.. .. ....+|-+|+|+. |..=.+.-|.+|. + +-=||++.||+
T Consensus 91 ~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~a-e~m~~~aaNaLLK-----~------LEEPp~~~fIL 158 (314)
T PRK07399 91 AEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDA-ETMNEAAANALLK-----T------LEEPGNGTLIL 158 (314)
T ss_pred hhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEch-hhcCHHHHHHHHH-----H------HhCCCCCeEEE
Confidence 000 011111 1112345442 22 2346799999984 2222222333441 1 11155778999
Q ss_pred ecCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 495 EPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 495 Ev~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
=+++....-|.-.|||=.|.|.+-. ..-+..||.+
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~---~~~~~~~L~~ 193 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLS---DEQLEQVLKR 193 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCC---HHHHHHHHHH
Confidence 9999999999999999999997632 2345667765
No 299
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.67 E-value=0.043 Score=67.37 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
|+++|+|||||||..+.|++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 300
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.64 E-value=27 Score=45.48 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2334 VAKIVGPKKEALRQAEEKLQLAMSALHE----KQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCV 2398 (2567)
Q Consensus 2334 V~~~V~Pk~~~l~~ae~~l~~a~~~L~~----~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~ 2398 (2567)
+-..++-.++++..+..+..+-+++|+. .++.+++++..++.-+...++...+...|++++...+
T Consensus 176 ~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 176 VRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444455555444444444444332 2333333444444444444444444444444444333
No 301
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.64 E-value=0.27 Score=66.94 Aligned_cols=134 Identities=20% Similarity=0.275 Sum_probs=77.5
Q ss_pred HHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEE---EE-Eec---cCCCCcCcccccccCCCCCCCcch
Q psy12680 361 MMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVE---II-VIN---PKSITMGQLYGQFDAVSHEWSDGI 433 (2567)
Q Consensus 361 ~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~---~~-~in---PKait~~eLyG~~d~~T~EW~DGv 433 (2567)
.-.+.|..++.||+|+||||+.++|++++.-.. +.. ..+.- .+ .|+ +.+...-+ +|..++ -||
T Consensus 31 ~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~--~~~-~~pCg~C~~C~~i~~~~~~~~dvie----idaas~---~gv 100 (584)
T PRK14952 31 AGRINHAYLFSGPRGCGKTSSARILARSLNCAQ--GPT-ATPCGVCESCVALAPNGPGSIDVVE----LDAASH---GGV 100 (584)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc--CCC-CCcccccHHHHHhhcccCCCceEEE----eccccc---cCH
Confidence 335689999999999999999999999985211 000 00100 00 011 11111111 122111 022
Q ss_pred HHHHHHHH----Hhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceee
Q psy12680 434 LAVSYRQF----AMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVS 508 (2567)
Q Consensus 434 ls~i~R~~----~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVS 508 (2567)
.-+|+. ... .....+-+|+|. +|-.=-+..|.+|. +|- ..|+++.|||=+.+.....|+-.|
T Consensus 101 --d~iRel~~~~~~~P~~~~~KVvIIDE-ah~Lt~~A~NALLK---~LE-------Epp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 101 --DDTRELRDRAFYAPAQSRYRIFIVDE-AHMVTTAGFNALLK---IVE-------EPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred --HHHHHHHHHHHhhhhcCCceEEEEEC-CCcCCHHHHHHHHH---HHh-------cCCCCeEEEEEeCChHhhHHHHHH
Confidence 122332 111 134578888887 55444567777652 111 156789999999888777777799
Q ss_pred eceeEEecC
Q psy12680 509 RCGMIYMEP 517 (2567)
Q Consensus 509 RcGmVy~~~ 517 (2567)
||-.+.|.+
T Consensus 168 Rc~~~~F~~ 176 (584)
T PRK14952 168 RTHHYPFRL 176 (584)
T ss_pred hceEEEeeC
Confidence 999999986
No 302
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.61 E-value=0.12 Score=70.37 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=78.2
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccc--cccCCCCCCCcchHHHHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYG--QFDAVSHEWSDGILAVSYRQ 440 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG--~~d~~T~EW~DGvls~i~R~ 440 (2567)
...|..++.||+|+||||+.+.|++++.--. +.. ..++- .+-+.+.+..+.-+. .+|..+ ..|+ .-+|+
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~--~~~-~~pC~-~C~~C~~i~~~~~~dv~~idgas---~~~v--ddIr~ 106 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCVN--GPT-PMPCG-ECSSCKSIDNDNSLDVIEIDGAS---NTSV--QDVRQ 106 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcccc--CCC-CCCCc-cchHHHHHHcCCCCCeEEecCcc---cCCH--HHHHH
Confidence 3469999999999999999999999984210 000 00100 011112221111111 111111 1221 12333
Q ss_pred HH----hc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEe
Q psy12680 441 FA----MS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYM 515 (2567)
Q Consensus 441 ~~----~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~ 515 (2567)
.. .. .....+-+|+|. +|..--+.+|.+|.- -| ..|+++.|||=+.++....|+-.|||-.+.|
T Consensus 107 l~e~~~~~p~~~~~KVvIIDE-a~~Ls~~a~naLLK~--------LE--epp~~~vfI~~tte~~kL~~tI~SRc~~~~f 175 (563)
T PRK06647 107 IKEEIMFPPASSRYRVYIIDE-VHMLSNSAFNALLKT--------IE--EPPPYIVFIFATTEVHKLPATIKSRCQHFNF 175 (563)
T ss_pred HHHHHHhchhcCCCEEEEEEC-hhhcCHHHHHHHHHh--------hc--cCCCCEEEEEecCChHHhHHHHHHhceEEEe
Confidence 32 11 234567888887 555555666666522 22 2578899999999988888888999999988
Q ss_pred cC
Q psy12680 516 EP 517 (2567)
Q Consensus 516 ~~ 517 (2567)
.+
T Consensus 176 ~~ 177 (563)
T PRK06647 176 RL 177 (563)
T ss_pred cC
Confidence 75
No 303
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.61 E-value=0.15 Score=61.26 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
|+|+|||||||||.-+.|++.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999988763
No 304
>PLN02842 nucleotide kinase
Probab=93.59 E-value=0.098 Score=69.06 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.8
Q ss_pred EEEccCCCChhHHHHHHHHHH
Q psy12680 369 MIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 369 mlvGp~gsGKSt~~~~L~~Al 389 (2567)
||+|||||||||..+.|++.+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~l 21 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKF 21 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHh
Confidence 799999999999999999876
No 305
>PF13173 AAA_14: AAA domain
Probab=93.59 E-value=0.094 Score=57.47 Aligned_cols=123 Identities=16% Similarity=0.254 Sum_probs=63.5
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHH-HHHHHhhhhcccCC
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQT-QDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~-q~~ies~lekr~~~ 1411 (2567)
|++.+++.||.|+|||++++.... .+. ..-..+.+||......... .+..+.-+++
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~------------------~~~-~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~---- 57 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAK------------------DLL-PPENILYINFDDPRDRRLADPDLLEYFLEL---- 57 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH------------------Hhc-ccccceeeccCCHHHHHHhhhhhHHHHHHh----
Confidence 467889999999999998864321 111 1223556666654432211 0011111111
Q ss_pred ccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC-CCCCcchhcc
Q psy12680 1412 VYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG-NTVTPRFSRH 1490 (2567)
Q Consensus 1412 ~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg-~~is~Rf~r~ 1490 (2567)
+.+ +..++|+|++..- -.....++.+.|.+ .+++++++....+.- ......+...
T Consensus 58 -~~~---~~~~i~iDEiq~~-------~~~~~~lk~l~d~~-------------~~~~ii~tgS~~~~l~~~~~~~l~gr 113 (128)
T PF13173_consen 58 -IKP---GKKYIFIDEIQYL-------PDWEDALKFLVDNG-------------PNIKIILTGSSSSLLSKDIAESLAGR 113 (128)
T ss_pred -hcc---CCcEEEEehhhhh-------ccHHHHHHHHHHhc-------------cCceEEEEccchHHHhhcccccCCCe
Confidence 111 5667899998753 13456677777643 234555544332221 2333444444
Q ss_pred ccceeccCCCHH
Q psy12680 1491 FNQIVINKFDDD 1502 (2567)
Q Consensus 1491 f~vi~i~~p~~~ 1502 (2567)
...+.+.+++..
T Consensus 114 ~~~~~l~Plsf~ 125 (128)
T PF13173_consen 114 VIEIELYPLSFR 125 (128)
T ss_pred EEEEEECCCCHH
Confidence 555666655544
No 306
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.59 E-value=0.26 Score=67.89 Aligned_cols=126 Identities=20% Similarity=0.273 Sum_probs=74.2
Q ss_pred HHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcc---cC----------CccEEEEEeccCCCCcCcccccccCCCCC
Q psy12680 362 MIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGE---LG----------EHKVEIIVINPKSITMGQLYGQFDAVSHE 428 (2567)
Q Consensus 362 ~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~---~~----------~~~v~~~~inPKait~~eLyG~~d~~T~E 428 (2567)
-.+.|.+++.||+|+||||+.+.|++++.-...... .+ +.....+.+|+..
T Consensus 35 ~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~---------------- 98 (585)
T PRK14950 35 GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS---------------- 98 (585)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc----------------
Confidence 345789999999999999999999998841100000 00 0112223333310
Q ss_pred CCcchHHHHHHHHH----hc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCC
Q psy12680 429 WSDGILAVSYRQFA----MS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVAS 503 (2567)
Q Consensus 429 W~DGvls~i~R~~~----~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~AS 503 (2567)
.+--.-+|+.. .. ....++-||+|. +|-.=-+.+|.+|.- |-+ -|+++.|||-+.++....
T Consensus 99 ---~~~vd~ir~ii~~~~~~p~~~~~kVvIIDE-a~~L~~~a~naLLk~-----LEe-----pp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 99 ---HTSVDDAREIIERVQFRPALARYKVYIIDE-VHMLSTAAFNALLKT-----LEE-----PPPHAIFILATTEVHKVP 164 (585)
T ss_pred ---cCCHHHHHHHHHHHhhCcccCCeEEEEEeC-hHhCCHHHHHHHHHH-----Hhc-----CCCCeEEEEEeCChhhhh
Confidence 01011233322 11 224578899997 332222445554421 111 256788999999999988
Q ss_pred cceeeeceeEEecC
Q psy12680 504 PATVSRCGMIYMEP 517 (2567)
Q Consensus 504 PATVSRcGmVy~~~ 517 (2567)
|+-.|||-.+.|.+
T Consensus 165 ~tI~SR~~~i~f~~ 178 (585)
T PRK14950 165 ATILSRCQRFDFHR 178 (585)
T ss_pred HHHHhccceeeCCC
Confidence 98899999999875
No 307
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.58 E-value=0.049 Score=59.48 Aligned_cols=69 Identities=26% Similarity=0.348 Sum_probs=49.1
Q ss_pred CCCCCCCCCchhHHHHHHHHh--------cCeEEEEeCCCCccHHHHHHh----------------------hhhhhhcC
Q psy12680 4 APEGPAGTGKTETTKDLAKAV--------AKLCIVFNCSDSMDYIGLGKF----------------------FKGLIATG 53 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~l--------G~~~~vfNCs~~~d~~~m~ri----------------------f~Gl~q~G 53 (2567)
...||+|+|||.+++.+++.+ ...++.++|....+...+.+- ..-+-+.+
T Consensus 8 ~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~ 87 (131)
T PF13401_consen 8 VISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRR 87 (131)
T ss_dssp EEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCT
T ss_pred EEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcC
Confidence 357999999999999999999 899999999988865544332 22233334
Q ss_pred c-cccccccccC-CchhHHHH
Q psy12680 54 A-WACFDEFNRI-DVEVLSVV 72 (2567)
Q Consensus 54 a-W~CFDEfNri-~~~vLSvv 72 (2567)
. =.++||+.++ +.+++..+
T Consensus 88 ~~~lviDe~~~l~~~~~l~~l 108 (131)
T PF13401_consen 88 VVLLVIDEADHLFSDEFLEFL 108 (131)
T ss_dssp EEEEEEETTHHHHTHHHHHHH
T ss_pred CeEEEEeChHhcCCHHHHHHH
Confidence 4 5678888888 64444444
No 308
>PRK08116 hypothetical protein; Validated
Probab=93.48 E-value=0.082 Score=65.49 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccH----------HHHHHhhhhhhhcCcccccccc--ccCCchhH
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDY----------IGLGKFFKGLIATGAWACFDEF--NRIDVEVL 69 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~----------~~m~rif~Gl~q~GaW~CFDEf--Nri~~~vL 69 (2567)
..||+|||||....++|+.+ |++|+..+.++-++. .....++..+.... -+++||+ .+......
T Consensus 119 l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviDDlg~e~~t~~~~ 197 (268)
T PRK08116 119 LWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILDDLGAERDTEWAR 197 (268)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEecccCCCCCHHHH
Confidence 57999999999999999986 899999997764432 12335666666655 6899999 55555554
Q ss_pred HHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCC-----CCCchhhHhhccccccccCCCHH
Q psy12680 70 SVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAG-----RSELPDNLKSLFRTVAMMVPDYA 138 (2567)
Q Consensus 70 Svvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaG-----RseLPdnLk~lFRpvam~~PD~~ 138 (2567)
+.+-+ |-++.... ...++||-|=..+. ..-+=+-|.....||.|--||++
T Consensus 198 ~~l~~----iin~r~~~---------------~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~R 252 (268)
T PRK08116 198 EKVYN----IIDSRYRK---------------GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSYR 252 (268)
T ss_pred HHHHH----HHHHHHHC---------------CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcChh
Confidence 44333 33332211 11367777732110 01122334445778888888875
No 309
>KOG0976|consensus
Probab=93.47 E-value=41 Score=45.74 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q psy12680 2085 EEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKE 2139 (2567)
Q Consensus 2085 ~el~~~~~rl~~GL~KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~ 2139 (2567)
..|+.+-.+++.-++||++| ++.+|.++.+-+-+|+..+.++.++.+++...
T Consensus 109 riLQn~c~~lE~ekq~lQ~t---i~~~q~d~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 109 RILQNKCLRLEMEKQKLQDT---IQGAQDDKKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 34444445555555555544 33344444444445555555555544444433
No 310
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.47 E-value=0.058 Score=58.19 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+|||||||||+.+.|++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 311
>PRK06762 hypothetical protein; Provisional
Probab=93.44 E-value=0.052 Score=62.16 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=47.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcC
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQ 445 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~ 445 (2567)
.-|+++|+|||||||+.+.|++.+. . ...++++..+-. +|++..+.....+.+ .+..+.|...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~----------~--~~~~i~~D~~r~-~l~~~~~~~~~~~~~-~~~~~~~~~~--- 65 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLG----------R--GTLLVSQDVVRR-DMLRVKDGPGNLSID-LIEQLVRYGL--- 65 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC----------C--CeEEecHHHHHH-HhccccCCCCCcCHH-HHHHHHHHHH---
Confidence 4588999999999999999998861 1 234556655442 344444322222322 1222222221
Q ss_pred CCCceEEEeCCCCCHH-HHHHHHhh
Q psy12680 446 NENRKWLIFDGPVDAI-WIENMNSV 469 (2567)
Q Consensus 446 ~~~~~WivfDGpVDa~-WIEnLNSV 469 (2567)
.....+|+||...+. |.+.+..+
T Consensus 66 -~~g~~vild~~~~~~~~~~~~~~l 89 (166)
T PRK06762 66 -GHCEFVILEGILNSDRYGPMLKEL 89 (166)
T ss_pred -hCCCEEEEchhhccHhHHHHHHHH
Confidence 223578889986433 33334433
No 312
>KOG0740|consensus
Probab=93.42 E-value=0.11 Score=66.95 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHH----HHHHHHhhhhcccC
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQ----TQDIIMSKLDKRRK 1410 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~----~q~~ies~lekr~~ 1410 (2567)
+..||.||+|||||++.++.- . +-....+|-||....+. ...++-.-+.-.
T Consensus 187 rglLLfGPpgtGKtmL~~aiA------------------s-----E~~atff~iSassLtsK~~Ge~eK~vralf~vA-- 241 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIA------------------T-----ESGATFFNISASSLTSKYVGESEKLVRALFKVA-- 241 (428)
T ss_pred chhheecCCCCchHHHHHHHH------------------h-----hhcceEeeccHHHhhhhccChHHHHHHHHHHHH--
Confidence 477999999999999887421 0 11233344454432221 112221111111
Q ss_pred CccCCCCCcEEEEEEcCCCCccccccC-CCC---h--HHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCC
Q psy12680 1411 GVYGPPLGKRCVVFVDDVNMPLKEEFG-AQP---P--IEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVT 1484 (2567)
Q Consensus 1411 ~~~gp~~gK~~vvFiDDiNmP~~d~yG-tQ~---~--ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is 1484 (2567)
...+--|+||||+....-..-. +++ . .|+|=|+.. --.- .=.+|-++||-|-|-.- +
T Consensus 242 -----r~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~---~~s~------~~drvlvigaTN~P~e~---D 304 (428)
T KOG0740|consen 242 -----RSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDG---KNSA------PDDRVLVIGATNRPWEL---D 304 (428)
T ss_pred -----HhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcc---ccCC------CCCeEEEEecCCCchHH---H
Confidence 1234469999999876554411 111 1 144444432 1110 01157778888877432 2
Q ss_pred cchh-ccccceeccCCCHHHHHHHHHHHHHhh
Q psy12680 1485 PRFS-RHFNQIVINKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1485 ~Rf~-r~f~vi~i~~p~~~sL~~If~~il~~~ 1515 (2567)
.-+. |.-.++++|-|++++-..|+..+|..+
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhC
Confidence 2222 333456799999999999999998766
No 313
>KOG0980|consensus
Probab=93.42 E-value=15 Score=50.58 Aligned_cols=222 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy12680 2096 VGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVK 2175 (2567)
Q Consensus 2096 ~GL~KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a~~~~~~v~~~~~~~~e~~~~~~~~~~~~~~~~ 2175 (2567)
+|-+| ..+..++..+..+++.+.-+|+....++.....+.+.. +...+-.-+++...+++..+..+.++
T Consensus 324 ~~sqk-d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~q----------l~~le~~~~e~q~~~qe~~~e~eqLr 392 (980)
T KOG0980|consen 324 NASQK-DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQ----------LLALEGELQEQQREAQENREEQEQLR 392 (980)
T ss_pred ccccC-ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCChHHHHHHHHHHHHHhcCCCCCcCCC
Q psy12680 2176 KDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDA 2255 (2567)
Q Consensus 2176 ~~e~~~~~~~~~~~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~PP~~V~~VmeaVciLlg~~~~~~~~~ 2255 (2567)
.+... ....+.++.+|.-.+++++.
T Consensus 393 ~elaq-----------l~a~r~q~eka~~~~ee~e~-------------------------------------------- 417 (980)
T KOG0980|consen 393 NELAQ-----------LLASRTQLEKAQVLVEEAEN-------------------------------------------- 417 (980)
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHhHHH--------------------------------------------
Q ss_pred CCCcccCCcHHHHhhhcchhhHhhhhccCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q psy12680 2256 GGQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVA 2335 (2567)
Q Consensus 2256 ~~~~~~~~W~~ak~~L~~~~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~Aa~~Lc~WV~A~~~Y~~V~ 2335 (2567)
+-.+.+...++++.+| +.--..=+-..-+|.+|.
T Consensus 418 -----------------------------~~l~~e~ry~klkek~-----------------t~l~~~h~~lL~K~~di~ 451 (980)
T KOG0980|consen 418 -----------------------------KALAAENRYEKLKEKY-----------------TELRQEHADLLRKYDDIQ 451 (980)
T ss_pred -----------------------------HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12680 2336 KIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEK 2415 (2567)
Q Consensus 2336 ~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek 2415 (2567)
+.++--++...+++++..+....|.+.+.+...++.|.+...+.+++..+|+..+..+++..+.. +..++.++
T Consensus 452 kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~-------~~~~~qs~ 524 (980)
T KOG0980|consen 452 KQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT-------LSNLAQSH 524 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHH
Q ss_pred ccHHHHHHHHHHHhhcchhHH
Q psy12680 2416 ERWSSTAKMLNEKYYQLTGDV 2436 (2567)
Q Consensus 2416 ~RW~~~~~~l~~~~~~l~GD~ 2436 (2567)
..|..++....++...+.+..
T Consensus 525 ~~~~~~l~~~l~~KD~~~~~~ 545 (980)
T KOG0980|consen 525 NNQLAQLEDLLKQKDRLAAEL 545 (980)
T ss_pred HHHHHHHHHHHHhhHHHHHHH
No 314
>KOG4809|consensus
Probab=93.41 E-value=25 Score=46.02 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=37.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2338 VGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKK 2385 (2567)
Q Consensus 2338 V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ 2385 (2567)
|+-+..+|+...+++.+..++|+..++-+++-+.+|+.|...-.++..
T Consensus 516 ~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Le 563 (654)
T KOG4809|consen 516 IEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLE 563 (654)
T ss_pred HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788888888888889998888888888888888765544433
No 315
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.40 E-value=0.31 Score=61.95 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCC
Q psy12680 350 FFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEW 429 (2567)
Q Consensus 350 ~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW 429 (2567)
..+.+..+-++.-...|...+.||.|+|||++.+.+++++.- .. ..+.+ -..+.+.|- .|
T Consensus 11 ~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c--~~-~~~~h-~D~~~~~~~-------~~--------- 70 (313)
T PRK05564 11 NIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILG--KS-QQREY-VDIIEFKPI-------NK--------- 70 (313)
T ss_pred HHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcC--CC-CCCCC-CCeEEeccc-------cC---------
Confidence 334445555566677899999999999999999999998731 00 00111 122233331 01
Q ss_pred CcchHHHHHHHHHh----c-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCc
Q psy12680 430 SDGILAVSYRQFAM----S-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASP 504 (2567)
Q Consensus 430 ~DGvls~i~R~~~~----~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASP 504 (2567)
..+=-.-+|+... . ....+|.+|+|. +|..=.+.-|++|. +|-+ -|+++.+||=+++....-|
T Consensus 71 -~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~-ad~m~~~a~naLLK-----~LEe-----pp~~t~~il~~~~~~~ll~ 138 (313)
T PRK05564 71 -KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYN-SEKMTEQAQNAFLK-----TIEE-----PPKGVFIILLCENLEQILD 138 (313)
T ss_pred -CCCCHHHHHHHHHHHhcCcccCCceEEEEec-hhhcCHHHHHHHHH-----HhcC-----CCCCeEEEEEeCChHhCcH
Confidence 0011122455433 2 234678999887 34444445555652 2222 4778999998899998889
Q ss_pred ceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 505 ATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 505 ATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
.-.|||=++.|.+-. ..-+..|+.+
T Consensus 139 TI~SRc~~~~~~~~~---~~~~~~~l~~ 163 (313)
T PRK05564 139 TIKSRCQIYKLNRLS---KEEIEKFISY 163 (313)
T ss_pred HHHhhceeeeCCCcC---HHHHHHHHHH
Confidence 889999999987621 2234667764
No 316
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.39 E-value=3.4 Score=58.81 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHhhhccccEEEEcCCCCChHHHHHHHHHHHHH
Q psy12680 1794 KIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQL 1831 (2567)
Q Consensus 1794 ki~ql~~~~~~r~~~lLVG~~GSGK~sl~rlla~~l~~ 1831 (2567)
.+.+.++.-...|..|+.|+.|+||||++|+++..++.
T Consensus 26 ~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 26 PLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 33444443334455789999999999999999987764
No 317
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.36 E-value=0.068 Score=66.81 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCCCCCCchhHHHHHHHHhcC-------eEEEEeCCCCccH------HHHHHhhhhhhhcCccccccccccC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAK-------LCIVFNCSDSMDY------IGLGKFFKGLIATGAWACFDEFNRI 64 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~-------~~~vfNCs~~~d~------~~m~rif~Gl~q~GaW~CFDEfNri 64 (2567)
..||+|||||.+.+.+|+.+.. +++.++|++-++- ..+..+|.- | .|.=.++||+..|
T Consensus 63 l~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~-a-~~gvL~iDEi~~L 133 (284)
T TIGR02880 63 FTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR-A-MGGVLFIDEAYYL 133 (284)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH-c-cCcEEEEechhhh
Confidence 3599999999999999998843 6788888654320 111122221 1 3566789999987
No 318
>PRK08181 transposase; Validated
Probab=93.35 E-value=0.046 Score=67.39 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHhcCCCcccccCCCCcccceeeh
Q psy12680 1320 TLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1320 T~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~ 1353 (2567)
.++....+..|+..+.+++|+||+|||||.+..+
T Consensus 92 ~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 92 QVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred HHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH
Confidence 3333334456888999999999999999977754
No 319
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.30 E-value=0.17 Score=69.21 Aligned_cols=130 Identities=23% Similarity=0.291 Sum_probs=73.6
Q ss_pred HHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhc---------c-cC----------CccEEEEEeccCCCCcCccccc
Q psy12680 362 MIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWG---------E-LG----------EHKVEIIVINPKSITMGQLYGQ 421 (2567)
Q Consensus 362 ~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~---------~-~~----------~~~v~~~~inPKait~~eLyG~ 421 (2567)
=.+.|+.++.||+|+||||+.+.|++++.--...+ + .| +....++.+++.+..
T Consensus 35 ~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~------- 107 (620)
T PRK14954 35 DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN------- 107 (620)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccC-------
Confidence 35679999999999999999999999984210000 0 00 001111222221100
Q ss_pred ccCCCCCCCcchHHHHHHHHHh-cCCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcC
Q psy12680 422 FDAVSHEWSDGILAVSYRQFAM-SQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLE 500 (2567)
Q Consensus 422 ~d~~T~EW~DGvls~i~R~~~~-~~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~ 500 (2567)
=.|-|- .+...+.. .....++-+|+|. +|-.-.+..|.+|+- |-+ .|+++.|||-+++..
T Consensus 108 -------~vd~Ir-~l~e~~~~~P~~~~~KVvIIdE-ad~Lt~~a~naLLK~-----LEe-----Pp~~tv~IL~t~~~~ 168 (620)
T PRK14954 108 -------SVDDIR-QLRENVRYGPQKGRYRVYIIDE-VHMLSTAAFNAFLKT-----LEE-----PPPHAIFIFATTELH 168 (620)
T ss_pred -------CHHHHH-HHHHHHHhhhhcCCCEEEEEeC-hhhcCHHHHHHHHHH-----HhC-----CCCCeEEEEEeCChh
Confidence 011111 12222211 1234578888887 455555555555531 111 346778888888887
Q ss_pred cCCcceeeeceeEEecC
Q psy12680 501 VASPATVSRCGMIYMEP 517 (2567)
Q Consensus 501 ~ASPATVSRcGmVy~~~ 517 (2567)
..-|+-.|||=+|.|.+
T Consensus 169 kLl~TI~SRc~~vef~~ 185 (620)
T PRK14954 169 KIPATIASRCQRFNFKR 185 (620)
T ss_pred hhhHHHHhhceEEecCC
Confidence 77777799999999975
No 320
>KOG0964|consensus
Probab=93.27 E-value=51 Score=46.26 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=36.4
Q ss_pred HHHhHHHH----HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2094 YTVGLEKL----DKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESA 2141 (2567)
Q Consensus 2094 l~~GL~KL----~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~ 2141 (2567)
+.+++.+| +++.++-+.+|.+++.+..+|+++-.+.+++...+...+.
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~ 446 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKG 446 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Confidence 45566654 4677888889999999999998888888888777764433
No 321
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.17 E-value=0.2 Score=69.82 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=69.9
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhh----hh--cCccccccccccCCchhHHHHHHHHHhh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGL----IA--TGAWACFDEFNRIDVEVLSVVAQQILTI 79 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl----~q--~GaW~CFDEfNri~~~vLSvvaqqi~~I 79 (2567)
.||+|||||.+++.+|+.++..++.+||+.. ..+.+..++..+ .. .+.-.++||+.+++...-.++.
T Consensus 58 ~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL------ 130 (725)
T PRK13341 58 YGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALL------ 130 (725)
T ss_pred ECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHH------
Confidence 6999999999999999999999999999852 223333333322 22 2345789999998754321111
Q ss_pred hhhhhcCCceEEEcCeEEEeeCceeEEE-EeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 80 QRGVTLGEEEILFEGTILKLDRTCSVFI-TMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 80 q~a~~~~~~~~~f~g~~i~l~~~~~iFi-TmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
..+.. ..+.+ |.. |-||. .++++.|.+-.+.+.+-.++..-|..++-
T Consensus 131 -~~lE~--g~IiL------------I~aTTenp~----~~l~~aL~SR~~v~~l~pLs~edi~~IL~ 178 (725)
T PRK13341 131 -PWVEN--GTITL------------IGATTENPY----FEVNKALVSRSRLFRLKSLSDEDLHQLLK 178 (725)
T ss_pred -HHhcC--ceEEE------------EEecCCChH----hhhhhHhhccccceecCCCCHHHHHHHHH
Confidence 11111 11111 111 22443 25667777666777788888777766643
No 322
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.17 E-value=80 Score=48.26 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=15.1
Q ss_pred CcccccCCCCcccceeeh
Q psy12680 1336 PVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~ 1353 (2567)
-++|+|++|+|||+++.+
T Consensus 29 ~~~l~G~NGaGKSTll~a 46 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMAA 46 (1486)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 357899999999998864
No 323
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.13 E-value=0.29 Score=66.83 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCCCCCCchhHHHHHHHHhcC------------------------eEEEEeCCCCccHHHHHHhhhhhhh---cC--ccc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAK------------------------LCIVFNCSDSMDYIGLGKFFKGLIA---TG--AWA 56 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~------------------------~~~vfNCs~~~d~~~m~rif~Gl~q---~G--aW~ 56 (2567)
.||.|||||.++|.||+++.+ .++.++-+.+.....+..+..=+.. .| -..
T Consensus 44 ~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kVi 123 (559)
T PRK05563 44 SGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVY 123 (559)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEE
Confidence 799999999999999999853 2233333333333333333322211 12 233
Q ss_pred cccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCC
Q psy12680 57 CFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPD 136 (2567)
Q Consensus 57 CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD 136 (2567)
-+||+.+|..+...++ +.+ +..-.. ..+-||+|-+| ..||.-+++=++.+.+..|+
T Consensus 124 IIDE~~~Lt~~a~naL---LKt----LEepp~------------~~ifIlatt~~-----~ki~~tI~SRc~~~~f~~~~ 179 (559)
T PRK05563 124 IIDEVHMLSTGAFNAL---LKT----LEEPPA------------HVIFILATTEP-----HKIPATILSRCQRFDFKRIS 179 (559)
T ss_pred EEECcccCCHHHHHHH---HHH----hcCCCC------------CeEEEEEeCCh-----hhCcHHHHhHheEEecCCCC
Confidence 4667666655432222 111 111111 11235556555 46888898888889988898
Q ss_pred HHHHHHHHH
Q psy12680 137 YALISEIIV 145 (2567)
Q Consensus 137 ~~lIaEi~L 145 (2567)
..-|.+.+-
T Consensus 180 ~~ei~~~L~ 188 (559)
T PRK05563 180 VEDIVERLK 188 (559)
T ss_pred HHHHHHHHH
Confidence 888777754
No 324
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.11 E-value=0.054 Score=63.39 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=54.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcCC
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQN 446 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~ 446 (2567)
-++|+||+||||||+.+.|+..+. .. ..++-+.++...--+ -.+| -++...-+.+......
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~----------~~---~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~ 64 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQ----------TQ---LLVAHRYITRPASAG-----SENH-IALSEQEFFTRAGQNL 64 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC----------Ce---EEEcCEECCCccchh-----HHhh-eeEcHHHHHHHHHCCc
Confidence 478999999999999999966531 11 122223333211000 0011 1223332222232222
Q ss_pred CCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceee
Q psy12680 447 ENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIA 485 (2567)
Q Consensus 447 ~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~ 485 (2567)
-...| .+||..=-.|.+ +...|..++. ++.+|-+..
T Consensus 65 ~~~~~-~~~g~~yg~~~~-~~~~l~~g~~-VI~~G~~~~ 100 (186)
T PRK10078 65 FALSW-HANGLYYGVGIE-IDLWLHAGFD-VLVNGSRAH 100 (186)
T ss_pred hhhHH-HHhCCccCCcHH-HHHHHhCCCE-EEEeChHHH
Confidence 22467 778888777874 8889988775 555777644
No 325
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.10 E-value=0.49 Score=66.05 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=74.5
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCccc----ccccCCCCCCCcch--HHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLY----GQFDAVSHEWSDGI--LAV 436 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLy----G~~d~~T~EW~DGv--ls~ 436 (2567)
++.|..++.||+|+||||+.+.|++++.--. . .++.++. ..+.++...+.. =.+|..+ ..|| +-.
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~--~-~~~~pCg---~C~sC~~i~~g~~~DviEidAas---~~kVDdIRe 106 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQ--G-VTATPCG---VCSSCVEIAQGRFVDLIEVDAAS---RTKVDDTRE 106 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccCcc--C-CCCCCCC---CchHHHHHhcCCCceEEEecccc---ccCHHHHHH
Confidence 4589999999999999999999999984210 0 0000110 001111111100 1112221 1232 222
Q ss_pred HHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEe
Q psy12680 437 SYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYM 515 (2567)
Q Consensus 437 i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~ 515 (2567)
++..+.... ...++-||+|- +|-.=.+.+|.+|- +|-= -|.+++|||=+.+.....|+-.|||=.+.|
T Consensus 107 Lie~v~~~P~~gk~KViIIDE-Ah~LT~eAqNALLK---tLEE-------PP~~vrFILaTTe~~kLl~TIlSRCq~f~f 175 (944)
T PRK14949 107 LLDNVQYRPSRGRFKVYLIDE-VHMLSRSSFNALLK---TLEE-------PPEHVKFLLATTDPQKLPVTVLSRCLQFNL 175 (944)
T ss_pred HHHHHHhhhhcCCcEEEEEec-hHhcCHHHHHHHHH---HHhc-------cCCCeEEEEECCCchhchHHHHHhheEEeC
Confidence 222222221 23567888884 55555666676651 1111 256788999888888888888999988777
Q ss_pred cC
Q psy12680 516 EP 517 (2567)
Q Consensus 516 ~~ 517 (2567)
.+
T Consensus 176 kp 177 (944)
T PRK14949 176 KS 177 (944)
T ss_pred CC
Confidence 65
No 326
>PRK14526 adenylate kinase; Provisional
Probab=93.06 E-value=0.26 Score=58.90 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=49.5
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCC-CcchHHHHHHHHHhcCC
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEW-SDGILAVSYRQFAMSQN 446 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW-~DGvls~i~R~~~~~~~ 446 (2567)
++|+|||||||||..+.|++.+....- +.|. -++ ..+...+-.-..+...++ .+.. -|-+...++++......
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~-llr-~~~~~~t~~g~~i~~~~~--~g~lvpd~~~~~lv~~~l~~~~ 76 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI--STGD-LFR-ENILNSTPLGKEIKQIVE--NGQLVPDSITIKIVEDKINTIK 76 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--ecCh-HHH-HhcccCChhhHHHHHHHH--cCccCChHHHHHHHHHHHhccc
Confidence 789999999999999999987531100 0000 000 001111100011111111 1111 24455566666554433
Q ss_pred CCceEEEeCCC-CCHHHHHHHHhhhc
Q psy12680 447 ENRKWLIFDGP-VDAIWIENMNSVLD 471 (2567)
Q Consensus 447 ~~~~WivfDGp-VDa~WIEnLNSVLD 471 (2567)
....||+ ||- =...-++.|...+.
T Consensus 77 ~~~g~il-DGfPR~~~Qa~~l~~~~~ 101 (211)
T PRK14526 77 NNDNFIL-DGFPRNINQAKALDKFLP 101 (211)
T ss_pred ccCcEEE-ECCCCCHHHHHHHHHhcC
Confidence 4456765 995 68888888876553
No 327
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.05 E-value=0.19 Score=64.97 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=71.6
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHHHHHHhc--ccC----------CccEEEEEeccCCCCcCcccccccCCCCCCCc
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWG--ELG----------EHKVEIIVINPKSITMGQLYGQFDAVSHEWSD 431 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~--~~~----------~~~v~~~~inPKait~~eLyG~~d~~T~EW~D 431 (2567)
..|++++.||+|+|||+..+.|++++.--.... ..+ +.....+.+||.. ..
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----------------~~ 97 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS-----------------NN 97 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----------------cC
Confidence 458999999999999999999999973100000 000 0011223344320 01
Q ss_pred c--hHHHHHHHHHhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceee
Q psy12680 432 G--ILAVSYRQFAMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVS 508 (2567)
Q Consensus 432 G--vls~i~R~~~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVS 508 (2567)
+ -+-.++..+... ....++.||+|.. |..=-+..|..|. +|.+ .|+++.+||-+.++....|+..|
T Consensus 98 ~~~~~~~l~~~~~~~p~~~~~~vviidea-~~l~~~~~~~Ll~-----~le~-----~~~~~~lIl~~~~~~~l~~~l~s 166 (355)
T TIGR02397 98 GVDDIREILDNVKYAPSSGKYKVYIIDEV-HMLSKSAFNALLK-----TLEE-----PPEHVVFILATTEPHKIPATILS 166 (355)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEeCh-hhcCHHHHHHHHH-----HHhC-----CccceeEEEEeCCHHHHHHHHHh
Confidence 1 122333333222 2245678888962 2221233444432 1111 26778899999998877888999
Q ss_pred eceeEEecC
Q psy12680 509 RCGMIYMEP 517 (2567)
Q Consensus 509 RcGmVy~~~ 517 (2567)
||-.+.+.+
T Consensus 167 r~~~~~~~~ 175 (355)
T TIGR02397 167 RCQRFDFKR 175 (355)
T ss_pred heeEEEcCC
Confidence 998887754
No 328
>PRK06526 transposase; Provisional
Probab=93.05 E-value=0.04 Score=67.59 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=21.5
Q ss_pred HHHhcCCCcccccCCCCcccceeeh
Q psy12680 1329 LLVTHQKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1329 ~ll~~~~pvll~GptGTGKT~~i~~ 1353 (2567)
.|+..+.+++++||+|||||.+..+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHH
Confidence 4677889999999999999987754
No 329
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.98 E-value=0.098 Score=69.46 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=51.7
Q ss_pred EEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCCCcCcccccccc---eeeecc
Q psy12680 934 VVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN---QIVINK 1010 (2567)
Q Consensus 934 ~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~~i~~r~~r~f~---~~~~~~ 1010 (2567)
++.|||+..-. |.....|.+..+++.- |+.++ ..++++-.||.--+.+.+|+.+.|. ++-+..
T Consensus 209 vLiIDDiq~l~----~k~~~~e~lf~l~N~~--~~~~k--------~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~ 274 (450)
T PRK14087 209 VLIIDDVQFLS----YKEKTNEIFFTIFNNF--IENDK--------QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQK 274 (450)
T ss_pred EEEEecccccc----CCHHHHHHHHHHHHHH--HHcCC--------cEEEECCCCHHHHhhccHHHHHHHhCCceeccCC
Confidence 88999996443 2223345555555432 23221 1366677788766788899999998 566889
Q ss_pred CCchhhHHHHHHHHh
Q psy12680 1011 FDDDTMVTIFSKILL 1025 (2567)
Q Consensus 1011 ~~~~~l~~i~~~~l~ 1025 (2567)
|+.++...|....+.
T Consensus 275 pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 275 LDNKTATAIIKKEIK 289 (450)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999988888776554
No 330
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.96 E-value=0.074 Score=71.65 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=45.5
Q ss_pred EEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcccc---ceecc
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN---QIVIN 1497 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~---vi~i~ 1497 (2567)
-+++||||..-.... ...+.|-.+++. .|+..+ -.++++-.+|..=..+.+|+.+.|. ++.+.
T Consensus 379 DLLlIDDIq~l~gke----~tqeeLF~l~N~--l~e~gk--------~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~ 444 (617)
T PRK14086 379 DILLVDDIQFLEDKE----STQEEFFHTFNT--LHNANK--------QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQ 444 (617)
T ss_pred CEEEEehhccccCCH----HHHHHHHHHHHH--HHhcCC--------CEEEecCCChHhhhhccHHHHhhhhcCceEEcC
Confidence 478899998654322 222333344442 233211 1233444455544557778776663 45688
Q ss_pred CCCHHHHHHHHHHHH
Q psy12680 1498 KFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1498 ~p~~~sL~~If~~il 1512 (2567)
.|++++...|....+
T Consensus 445 ~PD~EtR~aIL~kka 459 (617)
T PRK14086 445 PPELETRIAILRKKA 459 (617)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999988654
No 331
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.94 E-value=0.061 Score=64.21 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
=|.|+|||||||||.+++++.-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
No 332
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.94 E-value=0.19 Score=60.49 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=26.3
Q ss_pred eeeccchhhhHHHHHHHHHh-cC---CCeEEecCCCCCccceeehh
Q psy12680 760 IIVTTEETLRNIALMKLLVT-HQ---KPVMFIGPTGTGKSCYITVS 801 (2567)
Q Consensus 760 ~~VpT~dt~r~~~ll~ll~~-~~---~pvll~G~~GtGKT~~i~~~ 801 (2567)
.||+.............+.. .+ .|+++.|++|+|||-+++..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai 54 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAI 54 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHH
Confidence 45555544544455554544 33 48999999999999777543
No 333
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.92 E-value=0.34 Score=66.35 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=78.9
Q ss_pred HHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc--C----------CccEEEEEeccCCCCcCcccccccCCC
Q psy12680 359 YEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL--G----------EHKVEIIVINPKSITMGQLYGQFDAVS 426 (2567)
Q Consensus 359 ye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~--~----------~~~v~~~~inPKait~~eLyG~~d~~T 426 (2567)
++.-.+.|..++.||+|+||||+.+.+++++.--...... | +....++.||+.
T Consensus 32 l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaa--------------- 96 (647)
T PRK07994 32 LDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAA--------------- 96 (647)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccc---------------
Confidence 3334568999999999999999999999998531100000 0 001111222221
Q ss_pred CCCCcch--HHHHHHHHHhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCC
Q psy12680 427 HEWSDGI--LAVSYRQFAMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVAS 503 (2567)
Q Consensus 427 ~EW~DGv--ls~i~R~~~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~AS 503 (2567)
+..|| +-.++..+... .....+-+|+|. +|-.=.+..|.+|- +|-= -|+++.||+=+.|.....
T Consensus 97 --s~~~VddiR~li~~~~~~p~~g~~KV~IIDE-ah~Ls~~a~NALLK---tLEE-------Pp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 97 --SRTKVEDTRELLDNVQYAPARGRFKVYLIDE-VHMLSRHSFNALLK---TLEE-------PPEHVKFLLATTDPQKLP 163 (647)
T ss_pred --ccCCHHHHHHHHHHHHhhhhcCCCEEEEEec-hHhCCHHHHHHHHH---HHHc-------CCCCeEEEEecCCccccc
Confidence 12233 11222222222 123567888885 55555667777762 1111 267899999999999888
Q ss_pred cceeeeceeEEecC
Q psy12680 504 PATVSRCGMIYMEP 517 (2567)
Q Consensus 504 PATVSRcGmVy~~~ 517 (2567)
|.-.|||=.+.|.+
T Consensus 164 ~TI~SRC~~~~f~~ 177 (647)
T PRK07994 164 VTILSRCLQFHLKA 177 (647)
T ss_pred hHHHhhheEeeCCC
Confidence 88899998888875
No 334
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=92.92 E-value=0.18 Score=69.13 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=45.5
Q ss_pred EEEEEcCCCCccccccCCCChHHHHHHHhhcccc-cccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccccce
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMW-YDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQI 1494 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~-ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~vi 1494 (2567)
-++|+|++|.-.++ ....|.+.++.|-. +.|.......=.+..+||++||......+.+.++..|.+.
T Consensus 86 GvL~lDEi~rl~~~------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~ 154 (589)
T TIGR02031 86 GVLYVDMANLLDDG------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALH 154 (589)
T ss_pred CcEeccchhhCCHH------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCe
Confidence 48999999975443 45667778876643 2333333333357889999999854447777787777773
No 335
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.91 E-value=0.51 Score=65.02 Aligned_cols=129 Identities=18% Similarity=0.292 Sum_probs=76.1
Q ss_pred HHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhc----ccC----------CccEEEEEeccCCCCcCcccccccC
Q psy12680 359 YEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWG----ELG----------EHKVEIIVINPKSITMGQLYGQFDA 424 (2567)
Q Consensus 359 ye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~----~~~----------~~~v~~~~inPKait~~eLyG~~d~ 424 (2567)
+..-...|++++.||+|+||||+.+.|++++.-....+ ..| +.....+.+++
T Consensus 32 l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~-------------- 97 (620)
T PRK14948 32 LISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDA-------------- 97 (620)
T ss_pred HHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEec--------------
Confidence 33334679999999999999999999999984211000 000 00011112221
Q ss_pred CCCCCCcchHHHHHHHHHhc----C-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCc
Q psy12680 425 VSHEWSDGILAVSYRQFAMS----Q-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDL 499 (2567)
Q Consensus 425 ~T~EW~DGvls~i~R~~~~~----~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL 499 (2567)
....|| .-+|+.... . ...++-||+|. +|..=-+..|.+|. +|- .-|+++.|||=+.|.
T Consensus 98 ---~~~~~v--d~IReii~~a~~~p~~~~~KViIIDE-ad~Lt~~a~naLLK---~LE-------ePp~~tvfIL~t~~~ 161 (620)
T PRK14948 98 ---ASNTGV--DNIRELIERAQFAPVQARWKVYVIDE-CHMLSTAAFNALLK---TLE-------EPPPRVVFVLATTDP 161 (620)
T ss_pred ---cccCCH--HHHHHHHHHHhhChhcCCceEEEEEC-ccccCHHHHHHHHH---HHh-------cCCcCeEEEEEeCCh
Confidence 122343 344554321 1 23467888887 44333344555542 111 135677888888888
Q ss_pred CcCCcceeeeceeEEecC
Q psy12680 500 EVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 500 ~~ASPATVSRcGmVy~~~ 517 (2567)
...-|+-.|||.++.|.+
T Consensus 162 ~~llpTIrSRc~~~~f~~ 179 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRR 179 (620)
T ss_pred hhhhHHHHhheeEEEecC
Confidence 888888899999999874
No 336
>PRK14529 adenylate kinase; Provisional
Probab=92.90 E-value=0.21 Score=59.98 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=50.5
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCc-ccccccCCCCC-CCcchHHHHHHHHHhcC
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQ-LYGQFDAVSHE-WSDGILAVSYRQFAMSQ 445 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~e-LyG~~d~~T~E-W~DGvls~i~R~~~~~~ 445 (2567)
|+|+|||||||||.-+.|++.+..-.- +.| .-++. .+...+ ..++ +-.+++ .++ =-|=+...++++.....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i--s~g-dllr~-~i~~~t-~lg~~i~~~i~--~G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI--ESG-AIFRE-HIGGGT-ELGKKAKEYID--RGDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc--ccc-hhhhh-hccCCC-hHHHHHHHHHh--ccCcchHHHHHHHHHHHHhcc
Confidence 789999999999999999998742100 000 00000 000000 0001 111111 111 12334555555554443
Q ss_pred CCCceEEEeCC-CCCHHHHHHHHhhhcC
Q psy12680 446 NENRKWLIFDG-PVDAIWIENMNSVLDD 472 (2567)
Q Consensus 446 ~~~~~WivfDG-pVDa~WIEnLNSVLDD 472 (2567)
. .+=+|+|| |=...-+|.|...|.+
T Consensus 76 ~--~~g~iLDGfPRt~~Qa~~l~~~l~~ 101 (223)
T PRK14529 76 G--KNGWLLDGFPRNKVQAEKLWEALQK 101 (223)
T ss_pred C--CCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 3 33367899 7788999999888764
No 337
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.80 E-value=0.32 Score=58.75 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=21.8
Q ss_pred HHHHhcCCCcccccCCCCcccceeehhh
Q psy12680 1328 KLLVTHQKPVMFIGPTGTGKSCYITVSI 1355 (2567)
Q Consensus 1328 ~~ll~~~~pvll~GptGTGKT~~i~~~~ 1355 (2567)
..++.....+.++|++|||||++++..+
T Consensus 7 ~~l~~~~fr~viIG~sGSGKT~li~~lL 34 (241)
T PF04665_consen 7 NSLLKDPFRMVIIGKSGSGKTTLIKSLL 34 (241)
T ss_pred hHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 3455666678899999999999887544
No 338
>KOG0933|consensus
Probab=92.78 E-value=60 Score=45.81 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2322 CKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDL 2396 (2567)
Q Consensus 2322 c~WV~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~ 2396 (2567)
-.|=++...|..+.-+++-+..++...+..+...+.+......++..+..++...+.+..++.++...+...+..
T Consensus 808 ~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 808 KELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 456677777777666655555555555555555555555555555555555555554444444444444443333
No 339
>KOG4674|consensus
Probab=92.78 E-value=80 Score=48.04 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHH-HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q psy12680 2071 ELISTFKQLLKVKQEEVLNGKNRYT-------VGLEK-LDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKE 2139 (2567)
Q Consensus 2071 ~~l~~f~~ll~~k~~el~~~~~rl~-------~GL~K-L~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~ 2139 (2567)
+-......-+..+..++..++..+. .|.++ +..+..+.+.++.++..+.....++......+...++..
T Consensus 961 e~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~ 1037 (1822)
T KOG4674|consen 961 ESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTE 1037 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555 34443 555666666666666555555544444444444444333
No 340
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.74 E-value=1.1 Score=53.72 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy12680 2327 AICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAE- 2405 (2567)
Q Consensus 2327 A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~- 2405 (2567)
++-.+..-...++|++. ...+.|+.+++.+..+.+.+.+++..++.++.+......+.+.+..+++..+.++..+.
T Consensus 11 ~iq~lD~e~~rl~~~~~---~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~ 87 (239)
T COG1579 11 AIQKLDLEKDRLEPRIK---EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD 87 (239)
T ss_pred HHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34444444334444332 33333333333333333333333333333443333333333333333333333332222
Q ss_pred -HHHhhhhhhhccHHHHHHHHHHHhhcchh
Q psy12680 2406 -DLIGKLGGEKERWSSTAKMLNEKYYQLTG 2434 (2567)
Q Consensus 2406 -~Li~~L~~Ek~RW~~~~~~l~~~~~~l~G 2434 (2567)
+=.++|..|..-|+.....++.++..+.+
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~ 117 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELME 117 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345666666777777776666655543
No 341
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.73 E-value=0.21 Score=65.69 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=71.1
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhhcC--ccccccccccCCc---------
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIATG--AWACFDEFNRIDV--------- 66 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q~G--aW~CFDEfNri~~--------- 66 (2567)
..+||+|||||.++|.+|..++.+.+-+.+++-.+ ...+..+|. +|..+ +=..|||+..+-.
T Consensus 221 LL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~-~A~~~~P~ILfIDEID~l~~kR~~~~sgg 299 (438)
T PTZ00361 221 ILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFR-VAEENAPSIVFIDEIDAIGTKRYDATSGG 299 (438)
T ss_pred EEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHH-HHHhCCCcEEeHHHHHHHhccCCCCCCcc
Confidence 34799999999999999999999988888887432 222344443 33333 4468999876632
Q ss_pred --hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHh---hccccccccCCCHHHHH
Q psy12680 67 --EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLK---SLFRTVAMMVPDYALIS 141 (2567)
Q Consensus 67 --~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk---~lFRpvam~~PD~~lIa 141 (2567)
++-.++.+.+..+. .| .. ..+..|.+|-|. -..|++.|. .+-|.|.+-.||..--.
T Consensus 300 ~~e~qr~ll~LL~~Ld--------g~--~~-----~~~V~VI~ATNr----~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~ 360 (438)
T PTZ00361 300 EKEIQRTMLELLNQLD--------GF--DS-----RGDVKVIMATNR----IESLDPALIRPGRIDRKIEFPNPDEKTKR 360 (438)
T ss_pred cHHHHHHHHHHHHHHh--------hh--cc-----cCCeEEEEecCC----hHHhhHHhccCCeeEEEEEeCCCCHHHHH
Confidence 11122222221111 00 00 113345566662 124555443 34567888999988777
Q ss_pred HHH
Q psy12680 142 EII 144 (2567)
Q Consensus 142 Ei~ 144 (2567)
+|+
T Consensus 361 ~Il 363 (438)
T PTZ00361 361 RIF 363 (438)
T ss_pred HHH
Confidence 774
No 342
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.73 E-value=0.31 Score=62.28 Aligned_cols=123 Identities=19% Similarity=0.161 Sum_probs=76.0
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhhhh-----------------hcCccccccccccCC
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKGLI-----------------ATGAWACFDEFNRID 65 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~Gl~-----------------q~GaW~CFDEfNri~ 65 (2567)
.|++||||+...+.+-..- +.+.+++||+.--+ ..+...+.|-. ..|.=.++||+..|+
T Consensus 28 ~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~ 106 (329)
T TIGR02974 28 IGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATAS 106 (329)
T ss_pred ECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCC
Confidence 6999999999988775444 46999999996433 33433332421 123347999999999
Q ss_pred chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCC---CCCCCchhhHhhccccccccCCCHH
Q psy12680 66 VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGY---AGRSELPDNLKSLFRTVAMMVPDYA 138 (2567)
Q Consensus 66 ~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgY---aGRseLPdnLk~lFRpvam~~PD~~ 138 (2567)
.++-..+...|+. ..+.-.|..-....++-+..|.|..- .....+.+.|=..|-.+.+-+|-.+
T Consensus 107 ~~~Q~~Ll~~l~~---------~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLR 173 (329)
T TIGR02974 107 LLVQEKLLRVIEY---------GEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLR 173 (329)
T ss_pred HHHHHHHHHHHHc---------CcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchh
Confidence 9888777766542 12222333334455677888887642 1222344445444555667777654
No 343
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.69 E-value=0.34 Score=66.67 Aligned_cols=128 Identities=17% Similarity=0.248 Sum_probs=74.0
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHh--c-ccC----------CccEEEEEeccCCCCcCcccccccCCCCCC
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEW--G-ELG----------EHKVEIIVINPKSITMGQLYGQFDAVSHEW 429 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~--~-~~~----------~~~v~~~~inPKait~~eLyG~~d~~T~EW 429 (2567)
...|..++.||+|+||||+.+.+++++.-.... + ..| +....++.+++.. ..=
T Consensus 37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~--------------~~~ 102 (614)
T PRK14971 37 KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS--------------NNS 102 (614)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc--------------cCC
Confidence 457999999999999999999999987311000 0 000 0011222232211 000
Q ss_pred CcchHHHHHHHHHhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceee-cCCCCeEEEecCCcCcCCccee
Q psy12680 430 SDGILAVSYRQFAMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIA-LAPTTSLIFEPQDLEVASPATV 507 (2567)
Q Consensus 430 ~DGvls~i~R~~~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~-l~~~~~llFEv~dL~~ASPATV 507 (2567)
.|- +-.++.++... ....++.+|+|. +|-.=.+..|.+|. .|. .|+++.|||=++......|+-.
T Consensus 103 vd~-Ir~li~~~~~~P~~~~~KVvIIde-a~~Ls~~a~naLLK-----------~LEepp~~tifIL~tt~~~kIl~tI~ 169 (614)
T PRK14971 103 VDD-IRNLIEQVRIPPQIGKYKIYIIDE-VHMLSQAAFNAFLK-----------TLEEPPSYAIFILATTEKHKILPTIL 169 (614)
T ss_pred HHH-HHHHHHHHhhCcccCCcEEEEEEC-cccCCHHHHHHHHH-----------HHhCCCCCeEEEEEeCCchhchHHHH
Confidence 011 11222222211 234678999998 33333344555551 111 2567888998888888889999
Q ss_pred eeceeEEecC
Q psy12680 508 SRCGMIYMEP 517 (2567)
Q Consensus 508 SRcGmVy~~~ 517 (2567)
|||-+|.|.+
T Consensus 170 SRc~iv~f~~ 179 (614)
T PRK14971 170 SRCQIFDFNR 179 (614)
T ss_pred hhhheeecCC
Confidence 9999999875
No 344
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.65 E-value=0.39 Score=64.54 Aligned_cols=159 Identities=14% Similarity=0.221 Sum_probs=81.3
Q ss_pred HHHHHhcCC-C--cccccCCCCcccceeehhhhhhccccccccch---hhhhhhhhccccccceeeccccccCHHHHHHH
Q psy12680 1327 MKLLVTHQK-P--VMFIGPTGTGKSCYITVSILFIKNNSRLRSGF---QHFLLKELSIEQWQPLIMNFSAQTSANQTQDI 1400 (2567)
Q Consensus 1327 l~~ll~~~~-p--vll~GptGTGKT~~i~~~~~~~~~~~~l~~~~---~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ 1400 (2567)
+..++.+|+ | .||+||+|+|||++++.....+.......... -.....-.....+..+.++=++...-..++++
T Consensus 26 L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRel 105 (535)
T PRK08451 26 LSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIREL 105 (535)
T ss_pred HHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHH
Confidence 334455553 3 38999999999988864322211100000000 00000000011222333332222234566666
Q ss_pred HHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC
Q psy12680 1401 IMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG 1480 (2567)
Q Consensus 1401 ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg 1480 (2567)
++. ..|.|..|++-||++|+..+-..+ ....|+-.++.- =..+.|+.+++.|
T Consensus 106 ie~-------~~~~P~~~~~KVvIIDEad~Lt~~------A~NALLK~LEEp------------p~~t~FIL~ttd~--- 157 (535)
T PRK08451 106 IEQ-------TKYKPSMARFKIFIIDEVHMLTKE------AFNALLKTLEEP------------PSYVKFILATTDP--- 157 (535)
T ss_pred HHH-------HhhCcccCCeEEEEEECcccCCHH------HHHHHHHHHhhc------------CCceEEEEEECCh---
Confidence 653 235677788889999998665433 233344444420 0124455555443
Q ss_pred CCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1481 NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1481 ~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
..+.+-+.+...++.+..++.+.+......++.
T Consensus 158 ~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHH
Confidence 234444555567778888998888877766653
No 345
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.64 E-value=0.36 Score=62.99 Aligned_cols=117 Identities=17% Similarity=0.293 Sum_probs=74.7
Q ss_pred CCCCCCCCchhHHHHHHHHhcCe------E-----------------EEEeCC-CCccHHHHHHhhhhhhhcCc-----c
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKL------C-----------------IVFNCS-DSMDYIGLGKFFKGLIATGA-----W 55 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~------~-----------------~vfNCs-~~~d~~~m~rif~Gl~q~Ga-----W 55 (2567)
-.||+|+|||.+++.||+++-.. | .++.+. ..+....+-.++.-+..... -
T Consensus 41 f~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kV 120 (394)
T PRK07940 41 FTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRI 120 (394)
T ss_pred EECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEE
Confidence 46999999999999999997442 1 112121 12344445556665554332 4
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCC
Q psy12680 56 ACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVP 135 (2567)
Q Consensus 56 ~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~P 135 (2567)
.-+||+.+++.+.-.++ +.++. . +-....-|++|-|| ..|++.+++=++.+.+-.|
T Consensus 121 iiIDead~m~~~aanaL---Lk~LE----e------------p~~~~~fIL~a~~~-----~~llpTIrSRc~~i~f~~~ 176 (394)
T PRK07940 121 VVIEDADRLTERAANAL---LKAVE----E------------PPPRTVWLLCAPSP-----EDVLPTIRSRCRHVALRTP 176 (394)
T ss_pred EEEechhhcCHHHHHHH---HHHhh----c------------CCCCCeEEEEECCh-----HHChHHHHhhCeEEECCCC
Confidence 66788888877643222 22221 1 11123346677774 4789999999999999999
Q ss_pred CHHHHHHHHH
Q psy12680 136 DYALISEIIV 145 (2567)
Q Consensus 136 D~~lIaEi~L 145 (2567)
+.+.|.+.+.
T Consensus 177 ~~~~i~~~L~ 186 (394)
T PRK07940 177 SVEAVAEVLV 186 (394)
T ss_pred CHHHHHHHHH
Confidence 9998877654
No 346
>KOG0995|consensus
Probab=92.62 E-value=48 Score=44.29 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhccCC
Q psy12680 2192 KSECEEILSEAIPILEAAEAALNTLTS 2218 (2567)
Q Consensus 2192 k~e~e~~L~~a~P~L~~A~~Al~~L~k 2218 (2567)
+++.+++|+++.|.+++-.+.+-.++-
T Consensus 341 r~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 341 RNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445566677777777766665555443
No 347
>PRK05642 DNA replication initiation factor; Validated
Probab=92.59 E-value=0.26 Score=59.95 Aligned_cols=118 Identities=12% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhh
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRG 82 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a 82 (2567)
.||+|||||+...++|..+ |+.|+.+++.+-++. ...++..+.++ -..|+|++..+....-. .+.+..|-+.
T Consensus 51 ~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~~~-d~LiiDDi~~~~~~~~~--~~~Lf~l~n~ 125 (234)
T PRK05642 51 WGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--GPELLDNLEQY-ELVCLDDLDVIAGKADW--EEALFHLFNR 125 (234)
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--hHHHHHhhhhC-CEEEEechhhhcCChHH--HHHHHHHHHH
Confidence 4999999999999998654 788888888765543 34565566554 57899999987643211 2335555555
Q ss_pred hhcCCceEEEcCeEEEeeCceeEEEEeC--CCCCCCCCchhhHhhcc---ccccccCCCHHHHHHHHH
Q psy12680 83 VTLGEEEILFEGTILKLDRTCSVFITMN--PGYAGRSELPDNLKSLF---RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 83 ~~~~~~~~~f~g~~i~l~~~~~iFiTmN--PgYaGRseLPdnLk~lF---Rpvam~~PD~~lIaEi~L 145 (2567)
.......+. +|-| |.+- ..+-+.|++=| -.+.+-.||.....+++.
T Consensus 126 ~~~~g~~il---------------its~~~p~~l--~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 126 LRDSGRRLL---------------LAASKSPREL--PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred HHhcCCEEE---------------EeCCCCHHHc--CccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 554433333 3332 2221 12223477766 567777889988877754
No 348
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.59 E-value=0.27 Score=62.59 Aligned_cols=129 Identities=24% Similarity=0.278 Sum_probs=85.0
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccC------------CccEEEEEeccCCCCcCcccccccCCCCCCC
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELG------------EHKVEIIVINPKSITMGQLYGQFDAVSHEWS 430 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~------------~~~v~~~~inPKait~~eLyG~~d~~T~EW~ 430 (2567)
+..|.+++.||+|+||||....|++.+---...+... +..-.++.+||.......
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~------------- 88 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID------------- 88 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-------------
Confidence 5678999999999999999999999874110000000 012356677777554322
Q ss_pred cchHHHHHHHHHhcCC-----CCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcc
Q psy12680 431 DGILAVSYRQFAMSQN-----ENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPA 505 (2567)
Q Consensus 431 DGvls~i~R~~~~~~~-----~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPA 505 (2567)
+.-..+|+++.... ...+-|++|. +|..=.+.-|..+ |++-- =|.++.|++=+.+....-|-
T Consensus 89 --i~~~~vr~~~~~~~~~~~~~~~kviiide-ad~mt~~A~nall---k~lEe-------p~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 89 --IIVEQVRELAEFLSESPLEGGYKVVIIDE-ADKLTEDAANALL---KTLEE-------PPKNTRFILITNDPSKILPT 155 (325)
T ss_pred --chHHHHHHHHHHhccCCCCCCceEEEeCc-HHHHhHHHHHHHH---HHhcc-------CCCCeEEEEEcCChhhccch
Confidence 55566777654322 3457788874 6665555556555 22211 14567888888888899998
Q ss_pred eeeeceeEEecC
Q psy12680 506 TVSRCGMIYMEP 517 (2567)
Q Consensus 506 TVSRcGmVy~~~ 517 (2567)
-.|||-+++|.|
T Consensus 156 I~SRc~~i~f~~ 167 (325)
T COG0470 156 IRSRCQRIRFKP 167 (325)
T ss_pred hhhcceeeecCC
Confidence 899999999986
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.56 E-value=0.73 Score=57.29 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=29.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEecc
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINP 410 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inP 410 (2567)
.+-++++||+|+||||+...|+..+.. . +.+|-+...+|
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~------~-g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKK------Q-GKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh------c-CCEEEEEeCCC
Confidence 467999999999999999999987742 1 24555555555
No 350
>PRK08727 hypothetical protein; Validated
Probab=92.56 E-value=0.36 Score=58.68 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=74.1
Q ss_pred CCCCCCCCchhHHHHHHHH---hcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhh
Q psy12680 5 PEGPAGTGKTETTKDLAKA---VAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQR 81 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~---lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~ 81 (2567)
..||+|||||+.+.+++.. -|..++.+++.+..+ .+.+++.++.+.. ..|+|||..+...-=. .+.+..+.+
T Consensus 46 l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~l~~~d-lLiIDDi~~l~~~~~~--~~~lf~l~n 120 (233)
T PRK08727 46 LSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--RLRDALEALEGRS-LVALDGLESIAGQRED--EVALFDFHN 120 (233)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--hHHHHHHHHhcCC-EEEEeCcccccCChHH--HHHHHHHHH
Confidence 3699999999999998665 366778888776443 3456677776554 6899999988642211 111222333
Q ss_pred hhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhc---cccccccCCCHHHHHHHHH
Q psy12680 82 GVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSL---FRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 82 a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~l---FRpvam~~PD~~lIaEi~L 145 (2567)
....+. ..+.+|.|-.-+.=..+.+.|++= -+.+.+-.||.+.+.+++.
T Consensus 121 ~~~~~~---------------~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 121 RARAAG---------------ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred HHHHcC---------------CeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 333221 135666662111111234566664 3467888999999988865
No 351
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.53 E-value=66 Score=45.65 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=67.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q psy12680 2338 VGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGK------- 2410 (2567)
Q Consensus 2338 V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~------- 2410 (2567)
+.-.+.+|.....++...+.+|..+.....+...++..|+.++..+..+++.|+.+++....+|+++...++.
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666677777777777777777888899999999999999999999999888888888877755
Q ss_pred hhhhhccHHHHHHHHHHH
Q psy12680 2411 LGGEKERWSSTAKMLNEK 2428 (2567)
Q Consensus 2411 L~~Ek~RW~~~~~~l~~~ 2428 (2567)
+..|+.|-+..+..+...
T Consensus 369 ~qeE~~~~~~Ei~~l~d~ 386 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDM 386 (775)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556766665555544443
No 352
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=92.52 E-value=0.099 Score=62.63 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.1
Q ss_pred cCCCeEEecCCCCCccceeehhhh
Q psy12680 780 HQKPVMFIGPTGTGKSCYITVSIL 803 (2567)
Q Consensus 780 ~~~pvll~G~~GtGKT~~i~~~~~ 803 (2567)
...||||.|+.|||||++|+.++.
T Consensus 51 pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHH
Confidence 457899999999999999976553
No 353
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.18 Score=64.97 Aligned_cols=124 Identities=23% Similarity=0.348 Sum_probs=74.5
Q ss_pred CCCCC-----CCCCCCchhHHHHHHHHhcCe-----EEEEeCCC-CccHHHHHHhhhhhh---hcCc-------------
Q psy12680 2 GGAPE-----GPAGTGKTETTKDLAKAVAKL-----CIVFNCSD-SMDYIGLGKFFKGLI---ATGA------------- 54 (2567)
Q Consensus 2 GGap~-----GPaGTGKTEtvK~Lak~lG~~-----~~vfNCs~-~~d~~~m~rif~Gl~---q~Ga------------- 54 (2567)
|+.|. ||+|||||-|+|.+++.+=.. ++=.||-+ ..-|+.+++|+..+. .+|.
T Consensus 39 ~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~ 118 (366)
T COG1474 39 GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNL 118 (366)
T ss_pred CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH
Confidence 55554 999999999999999988666 78889977 667888888888663 2221
Q ss_pred -------cccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCcee-EEEEeCCCCCCCCCchhhHhhc
Q psy12680 55 -------WACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCS-VFITMNPGYAGRSELPDNLKSL 126 (2567)
Q Consensus 55 -------W~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~-iFiTmNPgYaGRseLPdnLk~l 126 (2567)
=..+||+|.|...--.++-+.++ +.... +-..+ |+|+....| ..-|=+.+++-
T Consensus 119 ~~~~~~~IvvLDEid~L~~~~~~~LY~L~r----~~~~~-------------~~~v~vi~i~n~~~~--~~~ld~rv~s~ 179 (366)
T COG1474 119 SKKGKTVIVILDEVDALVDKDGEVLYSLLR----APGEN-------------KVKVSIIAVSNDDKF--LDYLDPRVKSS 179 (366)
T ss_pred HhcCCeEEEEEcchhhhccccchHHHHHHh----hcccc-------------ceeEEEEEEeccHHH--HHHhhhhhhhc
Confidence 12245555554442211111111 11111 11112 344444444 45567778999
Q ss_pred cccccccCCCHH--HHHHHH
Q psy12680 127 FRTVAMMVPDYA--LISEII 144 (2567)
Q Consensus 127 FRpvam~~PD~~--lIaEi~ 144 (2567)
|.|..+.-|.|. -|.+|+
T Consensus 180 l~~~~I~F~pY~a~el~~Il 199 (366)
T COG1474 180 LGPSEIVFPPYTAEELYDIL 199 (366)
T ss_pred cCcceeeeCCCCHHHHHHHH
Confidence 999987777773 344443
No 354
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.40 E-value=0.49 Score=64.76 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=51.3
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhh------------------hhhcCccccccccccC
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKG------------------LIATGAWACFDEFNRI 64 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~G------------------l~q~GaW~CFDEfNri 64 (2567)
.|++|||||...+.+.... +.+++++||..--+ ..+...+.| .+. |.=..+||+.+|
T Consensus 225 ~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~-~GtL~ldei~~L 302 (534)
T TIGR01817 225 RGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHEKGAFTGAIAQRKGRFELAD-GGTLFLDEIGEI 302 (534)
T ss_pred ECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCcCCCCcccccC-CCeEEEechhhC
Confidence 5999999999999998874 56999999987544 333332213 122 333789999999
Q ss_pred CchhHHHHHHHHH
Q psy12680 65 DVEVLSVVAQQIL 77 (2567)
Q Consensus 65 ~~~vLSvvaqqi~ 77 (2567)
+.++-.-+.+.+.
T Consensus 303 ~~~~Q~~Ll~~l~ 315 (534)
T TIGR01817 303 SPAFQAKLLRVLQ 315 (534)
T ss_pred CHHHHHHHHHHHh
Confidence 9988777776664
No 355
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.39 E-value=0.19 Score=66.28 Aligned_cols=122 Identities=13% Similarity=0.154 Sum_probs=70.3
Q ss_pred CCCCCCCchhHHHHHHHHh-----cCeEEEEeCCCCccH-------HHHHHhhhhhhhcCccccccccccCCchhHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAV-----AKLCIVFNCSDSMDY-------IGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVA 73 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-----G~~~~vfNCs~~~d~-------~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvva 73 (2567)
.||+|||||..++++|+.+ |..|+-.+|++-+.- ..+..+..-+ ..--..++||+..+...-- .-
T Consensus 142 ~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~~--~~ 218 (405)
T TIGR00362 142 YGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGKER--TQ 218 (405)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCCHH--HH
Confidence 7999999999999999988 677888898763321 0111222222 2234799999998754210 00
Q ss_pred HHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccc---cccccCCCHHHHHHHHH
Q psy12680 74 QQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFR---TVAMMVPDYALISEIIV 145 (2567)
Q Consensus 74 qqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFR---pvam~~PD~~lIaEi~L 145 (2567)
+.+..+-+.+.... .-+.||.|-...--..|-+.|++=|+ .|.+-.||.....+|+-
T Consensus 219 ~~l~~~~n~~~~~~---------------~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 219 EEFFHTFNALHENG---------------KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred HHHHHHHHHHHHCC---------------CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 11222222222221 12455555111111123355666665 48888999999988864
No 356
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.38 E-value=0.41 Score=65.02 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=69.7
Q ss_pred CCCCCCCchhHHHHHHHHhcCe------------------------EEEEeCCCCccHHHHHHhhhh---hhhcC--ccc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKL------------------------CIVFNCSDSMDYIGLGKFFKG---LIATG--AWA 56 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~------------------------~~vfNCs~~~d~~~m~rif~G---l~q~G--aW~ 56 (2567)
.||.|||||++.+.||++|.+. ++.+|.+.......+-++..= ....| -..
T Consensus 44 ~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVI 123 (624)
T PRK14959 44 SGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVF 123 (624)
T ss_pred ECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEE
Confidence 6999999999999999999753 344555443333333333211 12222 245
Q ss_pred cccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCC
Q psy12680 57 CFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPD 136 (2567)
Q Consensus 57 CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD 136 (2567)
.+||+++++.+....+-. .+..... ..+-||+|-+| ..+|..|++=+..+.+-.++
T Consensus 124 IIDEad~Lt~~a~naLLk-------~LEEP~~------------~~ifILaTt~~-----~kll~TI~SRcq~i~F~pLs 179 (624)
T PRK14959 124 IIDEAHMLTREAFNALLK-------TLEEPPA------------RVTFVLATTEP-----HKFPVTIVSRCQHFTFTRLS 179 (624)
T ss_pred EEEChHhCCHHHHHHHHH-------HhhccCC------------CEEEEEecCCh-----hhhhHHHHhhhhccccCCCC
Confidence 688888888665433321 1111111 22345666654 36788888777788887887
Q ss_pred HHHHHHHH
Q psy12680 137 YALISEII 144 (2567)
Q Consensus 137 ~~lIaEi~ 144 (2567)
-.-|.+++
T Consensus 180 ~~eL~~~L 187 (624)
T PRK14959 180 EAGLEAHL 187 (624)
T ss_pred HHHHHHHH
Confidence 77666664
No 357
>PF05729 NACHT: NACHT domain
Probab=92.33 E-value=0.19 Score=57.02 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQL 391 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~ 391 (2567)
-++|+|+||+||||+.+.++..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 4789999999999999999888753
No 358
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.31 E-value=0.083 Score=61.48 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=19.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
..-|.|+|||||||||.+++|..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45689999999999999988643
No 359
>KOG0977|consensus
Probab=92.30 E-value=28 Score=46.71 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhccCCCchHHHhhcC
Q psy12680 2204 PILEAAEAALNTLTSNDITVVKTMK 2228 (2567)
Q Consensus 2204 P~L~~A~~Al~~L~k~dl~Eirs~~ 2228 (2567)
-.|.+=.+.+..+.+..|.|.+++.
T Consensus 207 q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 207 QTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444556667777777777777654
No 360
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.29 E-value=0.39 Score=64.80 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=28.0
Q ss_pred eEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 104 SVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 104 ~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
-||+|-++ ..+|..|++-...|.+-.++..-|.+.+-
T Consensus 152 fIL~Ttd~-----~kil~tI~SRc~~~~f~~Ls~~eI~~~L~ 188 (546)
T PRK14957 152 FILATTDY-----HKIPVTILSRCIQLHLKHISQADIKDQLK 188 (546)
T ss_pred EEEEECCh-----hhhhhhHHHheeeEEeCCCCHHHHHHHHH
Confidence 36778553 45777799989999999999887776643
No 361
>KOG0612|consensus
Probab=92.29 E-value=77 Score=45.85 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=13.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHH
Q psy12680 2437 LIAAGVVAYLGPFTVAFRQQQVS 2459 (2567)
Q Consensus 2437 llaaa~isY~G~f~~~~R~~ll~ 2459 (2567)
-..-..+.+-=.|+..||.++.+
T Consensus 828 k~lq~~leae~~~~~~~ktq~~e 850 (1317)
T KOG0612|consen 828 KELQDQLEAEQCFSSLMKTQIIE 850 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444445555566677777664
No 362
>PRK12377 putative replication protein; Provisional
Probab=92.27 E-value=0.17 Score=61.70 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred HHHHHhcCCCcccccCCCCcccceeeh
Q psy12680 1327 MKLLVTHQKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1327 l~~ll~~~~pvll~GptGTGKT~~i~~ 1353 (2567)
+..+.....+++|.||+|||||.++.+
T Consensus 94 a~~~~~~~~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 94 ADELMTGCTNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred HHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 334445557899999999999987754
No 363
>PLN02459 probable adenylate kinase
Probab=92.25 E-value=0.27 Score=60.07 Aligned_cols=91 Identities=20% Similarity=0.171 Sum_probs=51.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEE-----eccCCCCcCcccccccCCCCCC-CcchHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIV-----INPKSITMGQLYGQFDAVSHEW-SDGILAVSYRQF 441 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~-----inPKait~~eLyG~~d~~T~EW-~DGvls~i~R~~ 441 (2567)
++|+|||||||||.-+.|++.+... .+..-. +..++=.-.+.-.+++ .++. -|-+...++++.
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~~---------~is~gdllR~ei~~~t~lg~~i~~~~~--~G~lVPdeiv~~ll~~~ 100 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGVP---------HIATGDLVREEIKSSGPLGAQLKEIVN--QGKLVPDEIIFSLLSKR 100 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc---------EEeCcHHHHHHHhccchhHHHHHHHHH--cCCccCHHHHHHHHHHH
Confidence 7889999999999999999876311 111000 1111100011112221 2332 356777777765
Q ss_pred HhcC-CCCceEEEeCC-CCCHHHHHHHHhh
Q psy12680 442 AMSQ-NENRKWLIFDG-PVDAIWIENMNSV 469 (2567)
Q Consensus 442 ~~~~-~~~~~WivfDG-pVDa~WIEnLNSV 469 (2567)
.... ....+=+|+|| |=...-++.|.+.
T Consensus 101 l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~ 130 (261)
T PLN02459 101 LEAGEEEGESGFILDGFPRTVRQAEILEGV 130 (261)
T ss_pred HhcccccCCceEEEeCCCCCHHHHHHHHhc
Confidence 5432 12334467899 7888888888665
No 364
>PRK09087 hypothetical protein; Validated
Probab=92.25 E-value=0.35 Score=58.52 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=66.8
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhhhh
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVT 84 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~ 84 (2567)
..||+|+|||+.+..+++..|.. +-+.+.+.-. ++.++-+ -+.|+|++..++.. - ..+..+-+.+.
T Consensus 49 l~G~~GsGKThLl~~~~~~~~~~---~i~~~~~~~~----~~~~~~~--~~l~iDDi~~~~~~-~----~~lf~l~n~~~ 114 (226)
T PRK09087 49 LAGPVGSGKTHLASIWREKSDAL---LIHPNEIGSD----AANAAAE--GPVLIEDIDAGGFD-E----TGLFHLINSVR 114 (226)
T ss_pred EECCCCCCHHHHHHHHHHhcCCE---EecHHHcchH----HHHhhhc--CeEEEECCCCCCCC-H----HHHHHHHHHHH
Confidence 47999999999999998876543 2222222222 2223322 48999999887532 1 22444444444
Q ss_pred cCCceEEEcCeEEEeeCceeEEEEeC--CCCCCCCCchhhHhhcc---ccccccCCCHHHHHHHHH
Q psy12680 85 LGEEEILFEGTILKLDRTCSVFITMN--PGYAGRSELPDNLKSLF---RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 85 ~~~~~~~f~g~~i~l~~~~~iFiTmN--PgYaGRseLPdnLk~lF---Rpvam~~PD~~lIaEi~L 145 (2567)
+..+.+ .||-+ |.|- ....+.|++-| ..|.+-.||.+.+.+++.
T Consensus 115 ~~g~~i---------------lits~~~p~~~--~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 115 QAGTSL---------------LMTSRLWPSSW--NVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hCCCeE---------------EEECCCChHHh--ccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 433333 33433 2221 12345589888 889999999999998876
No 365
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=92.20 E-value=0.77 Score=61.73 Aligned_cols=205 Identities=14% Similarity=0.150 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHH
Q psy12680 1321 LRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDI 1400 (2567)
Q Consensus 1321 ~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ 1400 (2567)
......+..+.....|+++.|++||||+.+.+... .......--.+.+||++.+ +. .
T Consensus 144 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih------------------~~~~~~~~~~~~~~c~~~~-~~----~ 200 (463)
T TIGR01818 144 QEVFRAIGRLSRSDITVLINGESGTGKELVARALH------------------RHSPRANGPFIALNMAAIP-KD----L 200 (463)
T ss_pred HHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHH------------------HhCCCCCCCeEEEeCCCCC-HH----H
Confidence 33444455566788999999999999997654321 1111233456788988864 33 3
Q ss_pred HHhhhhcccCCcc-CCC--------CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeee
Q psy12680 1401 IMSKLDKRRKGVY-GPP--------LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLM 1471 (2567)
Q Consensus 1401 ies~lekr~~~~~-gp~--------~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v 1471 (2567)
+++.+-...++.| |.. .....++|+|++..=..+ ...-|.++++.+.+..-.... ..-.|+.++
T Consensus 201 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~------~q~~ll~~l~~~~~~~~~~~~-~~~~~~rii 273 (463)
T TIGR01818 201 IESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD------AQTRLLRVLADGEFYRVGGRT-PIKVDVRIV 273 (463)
T ss_pred HHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH------HHHHHHHHHhcCcEEECCCCc-eeeeeeEEE
Confidence 3333322222211 110 112356899987532221 233445555655443311111 122477888
Q ss_pred eecCCCCC----CCCCCcchhccccceec--cCCC--HHHHHHHHHHHHHhhhcccCCcccchhHHHHHHHHHHHHHHHH
Q psy12680 1472 CAMGPPST----GNTVTPRFSRHFNQIVI--NKFD--DDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIFKES 1543 (2567)
Q Consensus 1472 ~am~Ppgg----g~~is~Rf~r~f~vi~i--~~p~--~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~ati~ly~~v 1543 (2567)
++.+.+-. .+...+++...++++.+ |+.. .+.+..+...++..+-. .+...+..+.+......
T Consensus 274 ~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~--~~~~~~~~~~~~a~~~L------- 344 (463)
T TIGR01818 274 AATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAR--ELDVEPKLLDPEALERL------- 344 (463)
T ss_pred EeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHH--HhCCCCCCcCHHHHHHH-------
Confidence 88876531 12344455555555444 4433 34555555554433211 11111111111111110
Q ss_pred HhhcCCCCCCcccccCchhHHHHHHHHhc
Q psy12680 1544 LLNLLPTPTKSHYLFNLRDFARVIQGVLL 1572 (2567)
Q Consensus 1544 ~~~~lPTp~k~HY~FnlRDlsrv~qGll~ 1572 (2567)
...|+--|.|+|.++++-.+.
T Consensus 345 --------~~~~wpgNvreL~~~~~~~~~ 365 (463)
T TIGR01818 345 --------KQLRWPGNVRQLENLCRWLTV 365 (463)
T ss_pred --------HhCCCCChHHHHHHHHHHHHH
Confidence 123666899999999887554
No 366
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.19 E-value=0.62 Score=59.02 Aligned_cols=153 Identities=19% Similarity=0.212 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc----------CCccEEEEEe--ccCCCCcCcccc
Q psy12680 353 EKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL----------GEHKVEIIVI--NPKSITMGQLYG 420 (2567)
Q Consensus 353 ~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~----------~~~~v~~~~i--nPKait~~eLyG 420 (2567)
....+.++.-++.|++++.||+|+||+++...+++++-- ...... .+.+-..+.+ .|.. -|
T Consensus 14 ~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~------~~ 86 (319)
T PRK08769 14 DQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR------TG 86 (319)
T ss_pred HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEecCCCc------cc
Confidence 344455555678999999999999999999999998731 110000 0112234445 3311 00
Q ss_pred cccCCCCCCCcchHHHHHHHHHh----c-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEe
Q psy12680 421 QFDAVSHEWSDGILAVSYRQFAM----S-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFE 495 (2567)
Q Consensus 421 ~~d~~T~EW~DGvls~i~R~~~~----~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFE 495 (2567)
. .. +--|--.-+|++.. . ....+|.+|+| |+|..=.+.-|.+| |+|-=| |+++.||+-
T Consensus 87 ~----k~--~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~-~ae~m~~~AaNaLL---KtLEEP-------p~~~~fiL~ 149 (319)
T PRK08769 87 D----KL--RTEIVIEQVREISQKLALTPQYGIAQVVIVD-PADAINRAACNALL---KTLEEP-------SPGRYLWLI 149 (319)
T ss_pred c----cc--cccccHHHHHHHHHHHhhCcccCCcEEEEec-cHhhhCHHHHHHHH---HHhhCC-------CCCCeEEEE
Confidence 0 00 01133335666543 2 23457899998 78888888889988 344333 457788998
Q ss_pred cCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 496 PQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 496 v~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
+++....-|.-+|||=+|.|.+-. ..-+..||.+
T Consensus 150 ~~~~~~lLpTIrSRCq~i~~~~~~---~~~~~~~L~~ 183 (319)
T PRK08769 150 SAQPARLPATIRSRCQRLEFKLPP---AHEALAWLLA 183 (319)
T ss_pred ECChhhCchHHHhhheEeeCCCcC---HHHHHHHHHH
Confidence 999999888889999999998632 2455678864
No 367
>KOG0996|consensus
Probab=92.19 E-value=77 Score=45.64 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHH
Q psy12680 1808 FMIVGLSFAGKTCAYRMLSEALQL 1831 (2567)
Q Consensus 1808 ~lLVG~~GSGK~sl~rlla~~l~~ 1831 (2567)
-++|||.||||+.+.--+.++.++
T Consensus 111 taIvGPNGSGKSNVIDsmLFVFGf 134 (1293)
T KOG0996|consen 111 TAIVGPNGSGKSNVIDSMLFVFGF 134 (1293)
T ss_pred eeeECCCCCCchHHHHHHHHHhhh
Confidence 489999999999888777666654
No 368
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.18 E-value=0.53 Score=55.19 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCCCCCCchhHHHHHHHHhcCe-------------------------EEEEeCCCCccHHHHHHhhhhhhhc---Ccc--
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKL-------------------------CIVFNCSDSMDYIGLGKFFKGLIAT---GAW-- 55 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~-------------------------~~vfNCs~~~d~~~m~rif~Gl~q~---GaW-- 55 (2567)
.||.|+|||++++.+++.+-.. .++..-...+....+-.+..-+... |-+
T Consensus 20 ~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~kv 99 (188)
T TIGR00678 20 AGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESGRRV 99 (188)
T ss_pred ECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcccCCeEE
Confidence 7999999999999999997431 2222222234444554444333321 222
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCC
Q psy12680 56 ACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVP 135 (2567)
Q Consensus 56 ~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~P 135 (2567)
..+||+.++..+....+-.-+ .... ..++-||+|-|| ..|++.|++-++.|.+..|
T Consensus 100 iiide~~~l~~~~~~~Ll~~l-------e~~~------------~~~~~il~~~~~-----~~l~~~i~sr~~~~~~~~~ 155 (188)
T TIGR00678 100 VIIEDAERMNEAAANALLKTL-------EEPP------------PNTLFILITPSP-----EKLLPTIRSRCQVLPFPPL 155 (188)
T ss_pred EEEechhhhCHHHHHHHHHHh-------cCCC------------CCeEEEEEECCh-----HhChHHHHhhcEEeeCCCC
Confidence 347888888776543322111 1110 123334555454 5789999998999999999
Q ss_pred CHHHHHHHH
Q psy12680 136 DYALISEII 144 (2567)
Q Consensus 136 D~~lIaEi~ 144 (2567)
+..-+.+++
T Consensus 156 ~~~~~~~~l 164 (188)
T TIGR00678 156 SEEALLQWL 164 (188)
T ss_pred CHHHHHHHH
Confidence 988776664
No 369
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.17 E-value=0.085 Score=66.47 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~A 388 (2567)
+.|+|||||||||.+++++--
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999998764
No 370
>PRK11637 AmiB activator; Provisional
Probab=92.15 E-value=2.2 Score=56.73 Aligned_cols=126 Identities=12% Similarity=0.126 Sum_probs=61.5
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12680 2334 VAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGG 2413 (2567)
Q Consensus 2334 V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~ 2413 (2567)
+.++++=+++++++.++++...+.++...+.++..++.++..++.++++..++.+.++.+++..+.++..++.=+..+..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555555555555555555555555555555555555555555554444433
Q ss_pred hhccHHHHHHHHHHHhhcchhHHHHHHH-------HHHhhCCCCHHHHHHHHHHHHH
Q psy12680 2414 EKERWSSTAKMLNEKYYQLTGDVLIAAG-------VVAYLGPFTVAFRQQQVSTWVK 2463 (2567)
Q Consensus 2414 Ek~RW~~~~~~l~~~~~~l~GD~llaaa-------~isY~G~f~~~~R~~ll~~W~~ 2463 (2567)
+-.+.....-.-.. . . .=++|++|. ++.|+..++ ++|..+++....
T Consensus 125 ~l~~rlra~Y~~g~-~-~-~l~vLl~a~~~~~~~r~~~~l~~i~-~~d~~~l~~l~~ 177 (428)
T PRK11637 125 LLAAQLDAAFRQGE-H-T-GLQLILSGEESQRGERILAYFGYLN-QARQETIAELKQ 177 (428)
T ss_pred HHHHHHHHHHHcCC-C-c-HHHHHhcCCChhHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33332222222110 0 1 124555554 456666665 447777765443
No 371
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.14 E-value=0.45 Score=61.52 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc------------C----------CccEEEEEecc
Q psy12680 353 EKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL------------G----------EHKVEIIVINP 410 (2567)
Q Consensus 353 ~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~------------~----------~~~v~~~~inP 410 (2567)
....+.+..-...|+.++.||+|+||+++...+++++---...+.. + +.+-..+.|.|
T Consensus 29 ~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~ 108 (365)
T PRK07471 29 AALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLER 108 (365)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEec
Confidence 3344555555678999999999999999999999987310000000 0 01112334444
Q ss_pred CCCCcCcccccccCCCCCCCcchHHHHHHHHHhc-----CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceee
Q psy12680 411 KSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMS-----QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIA 485 (2567)
Q Consensus 411 Kait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~-----~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~ 485 (2567)
.. +..+...+..|----+|+.... .....+-+|+|. +|..=.+..|.+| |+|.=+
T Consensus 109 ~~----------~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDe-ad~m~~~aanaLL---K~LEep------ 168 (365)
T PRK07471 109 SW----------NEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDT-ADEMNANAANALL---KVLEEP------ 168 (365)
T ss_pred cc----------ccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEec-hHhcCHHHHHHHH---HHHhcC------
Confidence 22 1111112233322335554321 223567888997 4444457777877 333221
Q ss_pred cCCCCeEEEecCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 486 LAPTTSLIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 486 l~~~~~llFEv~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
|+++.||+=+++....-|.-.|||=.|.|.+-. ..-+..|+..
T Consensus 169 -p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~---~~~i~~~L~~ 211 (365)
T PRK07471 169 -PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLA---PEDVIDALAA 211 (365)
T ss_pred -CCCeEEEEEECCchhchHHhhccceEEECCCCC---HHHHHHHHHH
Confidence 345677777777777778889999999987632 2345667654
No 372
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.09 E-value=0.072 Score=67.44 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.5
Q ss_pred HhceE--EEEEccCCCChhHHHHHHHHH
Q psy12680 363 IVRWG--FMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 363 ~~rhG--vmlvGp~gsGKSt~~~~L~~A 388 (2567)
.++.| +-|+|||||||||++++++--
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556 779999999999999998753
No 373
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=92.00 E-value=0.58 Score=62.74 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=82.6
Q ss_pred CchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHH
Q psy12680 1317 TEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQ 1396 (2567)
Q Consensus 1317 T~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~ 1396 (2567)
.+...+....+..+...+.|+++.|++||||+.+.+.... ......-..+.+||++-+ +
T Consensus 149 S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~------------------~s~~~~~~~~~i~c~~~~-~-- 207 (457)
T PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHY------------------NSRRAKGPFIKVNCAALP-E-- 207 (457)
T ss_pred cHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHH------------------hCCCCCCCeEEEECCCCC-H--
Confidence 3334445555667778889999999999999987754211 111122346678888764 2
Q ss_pred HHHHHHhhhhcccCCccC--------CC-CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeee
Q psy12680 1397 TQDIIMSKLDKRRKGVYG--------PP-LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIE 1467 (2567)
Q Consensus 1397 ~q~~ies~lekr~~~~~g--------p~-~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~d 1467 (2567)
..+++.+--..++.+. .. ....-++|+||+..=..+ ...-|.++++.+.+. +....-..-.|
T Consensus 208 --~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~------~q~~L~~~l~~~~~~-~~~~~~~~~~~ 278 (457)
T PRK11361 208 --SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLV------LQAKLLRILQEREFE-RIGGHQTIKVD 278 (457)
T ss_pred --HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHH------HHHHHHHHHhcCcEE-eCCCCceeeec
Confidence 2334433222111111 00 112246889987653322 234455566665543 21111111247
Q ss_pred eeeeeecCCCCC----CCCCCcchhccccceeccCCCH
Q psy12680 1468 IQLMCAMGPPST----GNTVTPRFSRHFNQIVINKFDD 1501 (2567)
Q Consensus 1468 iq~v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p~~ 1501 (2567)
+.++++.+.+-. .+...+.+...++.+.+.-|+-
T Consensus 279 ~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppL 316 (457)
T PRK11361 279 IRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPL 316 (457)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCCh
Confidence 788888876521 2344556666666666655543
No 374
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.99 E-value=0.49 Score=64.07 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=24.3
Q ss_pred CCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 117 SELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 117 seLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
..||..|++=+..+.+..|+..-|.+.+-
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~ 188 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLK 188 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHH
Confidence 57888999889999999999888777653
No 375
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.98 E-value=0.13 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-..|.||+||||||++..++-+|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 489999999999999999888873
No 376
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.94 E-value=0.098 Score=58.09 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.1
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+++|||||||||..+.|.+.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7999999999999999998765
No 377
>PRK15115 response regulator GlrR; Provisional
Probab=91.91 E-value=0.6 Score=62.39 Aligned_cols=228 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred ceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc
Q psy12680 1312 QIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ 1391 (2567)
Q Consensus 1312 ~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~ 1391 (2567)
.++-..+...+....+..+...+.|+++.|++|||||.+.+. +-..........+.+||++-
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~------------------ih~~s~r~~~~f~~i~c~~~ 196 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQA------------------IHNASPRASKPFIAINCGAL 196 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHH------------------HHHhcCCCCCCeEEEeCCCC
Q ss_pred cCHHHHHHHHHhhhhcccCCccCCCCCcE---------EEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCccee
Q psy12680 1392 TSANQTQDIIMSKLDKRRKGVYGPPLGKR---------CVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVA 1462 (2567)
Q Consensus 1392 Tts~~~q~~ies~lekr~~~~~gp~~gK~---------~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~ 1462 (2567)
+. ..+++.+.-..++.|......+ -++|+|++.-=..+ ..+-|-.+++.+.+ .+.....
T Consensus 197 ~~-----~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~------~q~~L~~~l~~~~~-~~~g~~~ 264 (444)
T PRK15115 197 PE-----QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP------LQVKLLRVLQERKV-RPLGSNR 264 (444)
T ss_pred CH-----HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH------HHHHHHHHHhhCCE-EeCCCCc
Q ss_pred eeeeeeeeeeecCCCCCC----CCCCcchhccccceeccCCCHHHHHHHHHHHHHhhhc--ccCCcccchhHHHHHHHHH
Q psy12680 1463 VKLIEIQLMCAMGPPSTG----NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLD--TRGFSKEFDPCIEQLVQAT 1536 (2567)
Q Consensus 1463 ~~i~diq~v~am~Ppggg----~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~--~~gf~~~v~~~~~~lv~at 1536 (2567)
..-.|+.++++.+.+-.. +...+++...++.+.+.-|+-.+=..-...++..++. ...+...+..+.+....+.
T Consensus 265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (444)
T PRK15115 265 DIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRL 344 (444)
T ss_pred eeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Q ss_pred HHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhccchHHHhcHHHH
Q psy12680 1537 LHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLSVPEAIESLLSM 1584 (2567)
Q Consensus 1537 i~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~~~~~~i~~~~~l 1584 (2567)
.. .|+--|.|+|.++++-++.......-+...+
T Consensus 345 ~~---------------~~WpgNvreL~~~i~~~~~~~~~~~i~~~~l 377 (444)
T PRK15115 345 MT---------------ASWPGNVRQLVNVIEQCVALTSSPVISDALV 377 (444)
T ss_pred Hh---------------CCCCChHHHHHHHHHHHHHhCCCCccChhhh
No 378
>PRK14527 adenylate kinase; Provisional
Probab=91.89 E-value=0.19 Score=59.14 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+++|||||||||..+.|++.+
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998775
No 379
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.83 E-value=1.5 Score=55.66 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhc-ccC----------CccEEEEEeccCCCCcCcccc
Q psy12680 352 LEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWG-ELG----------EHKVEIIVINPKSITMGQLYG 420 (2567)
Q Consensus 352 i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~-~~~----------~~~v~~~~inPKait~~eLyG 420 (2567)
-.+..+.++.-+..|+.++.||.|.||+++...+++++--.+..+ ..| +.+-..+.|.|..- |
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~------~ 85 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE------G 85 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC------C
Confidence 445666777778899999999999999999999999973211000 000 12334566666210 0
Q ss_pred cccCCCCCCCcchHHHHHHHHHh----c-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEe
Q psy12680 421 QFDAVSHEWSDGILAVSYRQFAM----S-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFE 495 (2567)
Q Consensus 421 ~~d~~T~EW~DGvls~i~R~~~~----~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFE 495 (2567)
.. |--.-+|+... . .....|.+|+|. +|..=.+.-|++| |+|-=| |+++.||+-
T Consensus 86 ------~~----I~vdqiR~l~~~~~~~~~~~~~kV~iI~~-ae~m~~~AaNaLL---KtLEEP-------p~~t~fiL~ 144 (319)
T PRK06090 86 ------KS----ITVEQIRQCNRLAQESSQLNGYRLFVIEP-ADAMNESASNALL---KTLEEP-------APNCLFLLV 144 (319)
T ss_pred ------Cc----CCHHHHHHHHHHHhhCcccCCceEEEecc-hhhhCHHHHHHHH---HHhcCC-------CCCeEEEEE
Confidence 00 11112344321 1 234568888875 6676677778887 333222 667899999
Q ss_pred cCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 496 PQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 496 v~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
+++....-|.-+|||=.+.|.+-. ...+..|+.+
T Consensus 145 t~~~~~lLpTI~SRCq~~~~~~~~---~~~~~~~L~~ 178 (319)
T PRK06090 145 THNQKRLLPTIVSRCQQWVVTPPS---TAQAMQWLKG 178 (319)
T ss_pred ECChhhChHHHHhcceeEeCCCCC---HHHHHHHHHH
Confidence 999999999999999999998643 4567778865
No 380
>KOG2028|consensus
Probab=91.83 E-value=0.14 Score=62.74 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=51.9
Q ss_pred ccccccccc-hhhHHHHHHHhhhcccCcccCCCCCceeEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhhh
Q psy12680 897 IMNFSAQTS-ANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAV 975 (2567)
Q Consensus 897 ~~~fs~~ts-~~~~q~~i~~~lekr~~~~~gp~~~k~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~ 975 (2567)
++..||.++ .+...+++|+- ..+.-..+++.|+|||.++-=++- | +|.+.-
T Consensus 193 fvelSAt~a~t~dvR~ife~a------q~~~~l~krkTilFiDEiHRFNks----Q------------------QD~fLP 244 (554)
T KOG2028|consen 193 FVELSATNAKTNDVRDIFEQA------QNEKSLTKRKTILFIDEIHRFNKS----Q------------------QDTFLP 244 (554)
T ss_pred EEEEeccccchHHHHHHHHHH------HHHHhhhcceeEEEeHHhhhhhhh----h------------------hhcccc
Confidence 455566555 56666777643 223334567899999988632221 1 111111
Q ss_pred hhh--hhhhhhccCC-CCCCCCcCcccccccceeeeccCCchhhHHHHH
Q psy12680 976 KLI--EIQLMCAMGP-PSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFS 1021 (2567)
Q Consensus 976 ~~~--~~~~~~a~~p-~~~~~~i~~r~~r~f~~~~~~~~~~~~l~~i~~ 1021 (2567)
-|+ ++.+|+|..- |+ ..++.-|...-.++.++.-..+.+.+|..
T Consensus 245 ~VE~G~I~lIGATTENPS--Fqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 245 HVENGDITLIGATTENPS--FQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred eeccCceEEEecccCCCc--cchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 222 3567776542 33 34455555556677777666666666544
No 381
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.79 E-value=2.9 Score=46.80 Aligned_cols=95 Identities=25% Similarity=0.387 Sum_probs=68.2
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12680 2337 IVGPKKEALRQAEEKLQLAMSALHEKQEQ---NRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGG 2413 (2567)
Q Consensus 2337 ~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~---l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~ 2413 (2567)
++.-+...|.+++..+..+...+...... ...+..+++.|+.+++.+..........+..+..+.+..++=+..|..
T Consensus 43 K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~ 122 (143)
T PF12718_consen 43 KNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQ 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 33344444444444444444444443332 224667888888888888888888888888888888888999999999
Q ss_pred hhccHHHHHHHHHHHhhc
Q psy12680 2414 EKERWSSTAKMLNEKYYQ 2431 (2567)
Q Consensus 2414 Ek~RW~~~~~~l~~~~~~ 2431 (2567)
+...|......+..++..
T Consensus 123 ~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 123 ERDQWEEKYEELEEKYKE 140 (143)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999888753
No 382
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.75 E-value=0.66 Score=60.44 Aligned_cols=114 Identities=12% Similarity=0.161 Sum_probs=72.3
Q ss_pred CCCCCCCchhHHHHHHHHhcCe------------EEEEeCCCCccHHHHHHhhhhhhhcCc-----cccccccccCCchh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKL------------CIVFNCSDSMDYIGLGKFFKGLIATGA-----WACFDEFNRIDVEV 68 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~------------~~vfNCs~~~d~~~m~rif~Gl~q~Ga-----W~CFDEfNri~~~v 68 (2567)
+||.|+|||++++.+|+.++.+ ++-.++....+...+.+++.-+..... =..+||+.++..+.
T Consensus 45 ~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~ 124 (367)
T PRK14970 45 CGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAA 124 (367)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHH
Confidence 7999999999999999998652 222344444455677777765444333 35689998887643
Q ss_pred HHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCcee--EEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 69 LSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCS--VFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 69 LSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~--iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+..+ ...+... |... ||+|- .+..++.-+++-++.|.+-.|+..-|.+++.
T Consensus 125 ~~~l-------l~~le~~--------------~~~~~~Il~~~-----~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 125 FNAF-------LKTLEEP--------------PAHAIFILATT-----EKHKIIPTILSRCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred HHHH-------HHHHhCC--------------CCceEEEEEeC-----CcccCCHHHHhcceeEecCCccHHHHHHHHH
Confidence 3222 1111111 1122 23332 3567888888888899998898887777654
No 383
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.71 E-value=0.43 Score=63.97 Aligned_cols=136 Identities=24% Similarity=0.316 Sum_probs=75.4
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCc---CcccccccCCCCCCCcchHH-HHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITM---GQLYGQFDAVSHEWSDGILA-VSY 438 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~---~eLyG~~d~~T~EW~DGvls-~i~ 438 (2567)
.+.|+.++.||+|+||||+.+.+++++.-... ..+ .++.. +.|-..+.. ..+| .+|..++ -|+=. +-+
T Consensus 36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~--~~~-~pc~~-c~nc~~i~~g~~~d~~-eidaas~---~gvd~ir~I 107 (486)
T PRK14953 36 RVSHAYIFAGPRGTGKTTIARILAKVLNCLNP--QEG-EPCGK-CENCVEIDKGSFPDLI-EIDAASN---RGIDDIRAL 107 (486)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCC--CCC-CCCCc-cHHHHHHhcCCCCcEE-EEeCccC---CCHHHHHHH
Confidence 34699999999999999999999999852110 000 01110 111111111 0111 1232221 12210 112
Q ss_pred HHHHh-cC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEec
Q psy12680 439 RQFAM-SQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYME 516 (2567)
Q Consensus 439 R~~~~-~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~~ 516 (2567)
++.+. .+ ...++-+|+|- +|....+..|.+|.- |-+ .|+++.+||=++++...-|+--|||-.|.|.
T Consensus 108 ~~~~~~~P~~~~~KVvIIDE-ad~Lt~~a~naLLk~-----LEe-----pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~ 176 (486)
T PRK14953 108 RDAVSYTPIKGKYKVYIIDE-AHMLTKEAFNALLKT-----LEE-----PPPRTIFILCTTEYDKIPPTILSRCQRFIFS 176 (486)
T ss_pred HHHHHhCcccCCeeEEEEEC-hhhcCHHHHHHHHHH-----Hhc-----CCCCeEEEEEECCHHHHHHHHHHhceEEEcC
Confidence 22222 22 24568888887 566666666766521 111 2667888888888777766668999998887
Q ss_pred C
Q psy12680 517 P 517 (2567)
Q Consensus 517 ~ 517 (2567)
+
T Consensus 177 ~ 177 (486)
T PRK14953 177 K 177 (486)
T ss_pred C
Confidence 5
No 384
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.69 E-value=0.1 Score=55.39 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=43.2
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCch
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVE 67 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~ 67 (2567)
..||+|+|||..++.|++.++..+-.-..+.-.--..-.+++.|-..- .=.++|||.....+
T Consensus 3 i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q-~vvi~DD~~~~~~~ 64 (107)
T PF00910_consen 3 IYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQ-PVVIIDDFGQDNDG 64 (107)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCC-cEEEEeecCccccc
Confidence 369999999999999999998655222222221223346677777633 44899999999976
No 385
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.64 E-value=0.55 Score=64.70 Aligned_cols=159 Identities=15% Similarity=0.218 Sum_probs=82.2
Q ss_pred HHHHHhcC---CCcccccCCCCcccceeehhhhhhcccc---ccccchhhhhhhhhc-cccccceeeccccccCHHHHHH
Q psy12680 1327 MKLLVTHQ---KPVMFIGPTGTGKSCYITVSILFIKNNS---RLRSGFQHFLLKELS-IEQWQPLIMNFSAQTSANQTQD 1399 (2567)
Q Consensus 1327 l~~ll~~~---~pvll~GptGTGKT~~i~~~~~~~~~~~---~l~~~~~~~ll~~l~-~~~~~~~~lnfSa~Tts~~~q~ 1399 (2567)
+..++.++ +..||+||+|+|||++++.....+.-.. ....--.....+.+. ......+.++-+..+....+++
T Consensus 28 L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ 107 (585)
T PRK14950 28 LRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDARE 107 (585)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHH
Confidence 34444444 2358999999999998875332221100 000000000001111 1112233445445566677777
Q ss_pred HHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1400 IIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1400 ~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
+++. + .+.|..+++-||++|++.+=. ......||+-+ +.-. ..+.||.+++-.
T Consensus 108 ii~~-~------~~~p~~~~~kVvIIDEa~~L~-----~~a~naLLk~L-Eepp------------~~tv~Il~t~~~-- 160 (585)
T PRK14950 108 IIER-V------QFRPALARYKVYIIDEVHMLS-----TAAFNALLKTL-EEPP------------PHAIFILATTEV-- 160 (585)
T ss_pred HHHH-H------hhCcccCCeEEEEEeChHhCC-----HHHHHHHHHHH-hcCC------------CCeEEEEEeCCh--
Confidence 6643 2 245566777788999975432 22233444443 3210 123444443211
Q ss_pred CCCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1480 GNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1480 g~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
..+.+.+.+.+.++.+..++...+..+...++.
T Consensus 161 -~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~ 193 (585)
T PRK14950 161 -HKVPATILSRCQRFDFHRHSVADMAAHLRKIAA 193 (585)
T ss_pred -hhhhHHHHhccceeeCCCCCHHHHHHHHHHHHH
Confidence 235566666777788888899888887776653
No 386
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.64 E-value=0.44 Score=62.81 Aligned_cols=97 Identities=24% Similarity=0.357 Sum_probs=57.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCC-CcCcc--ccccc--CCCCCCCcchHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSI-TMGQL--YGQFD--AVSHEWSDGILAVSYR 439 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKai-t~~eL--yG~~d--~~T~EW~DGvls~i~R 439 (2567)
..-++++||+|+||||+.-.|+.++... .++.+|-+...+|--+ ...+| ||..- |...-....=+...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-----~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~ 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-----YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH
Confidence 3478999999999999999998887522 1235676666666321 11222 11100 0000011111223333
Q ss_pred HHHhcCCCCceEEEeCCC----CCHHHHHHHHhhhc
Q psy12680 440 QFAMSQNENRKWLIFDGP----VDAIWIENMNSVLD 471 (2567)
Q Consensus 440 ~~~~~~~~~~~WivfDGp----VDa~WIEnLNSVLD 471 (2567)
+. ....+|++|.| .|+.-++-|..+++
T Consensus 296 ~~-----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 296 QL-----RDCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred Hh-----CCCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 32 24579999965 78999999999998
No 387
>KOG0995|consensus
Probab=91.62 E-value=62 Score=43.34 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q psy12680 2078 QLLKVKQEEVLNGKNRYTVGLE----KLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKES 2140 (2567)
Q Consensus 2078 ~ll~~k~~el~~~~~rl~~GL~----KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~ 2140 (2567)
..+.+++..++...+++++-+. |-..-...++.|+.+++++.-+++..+++.+++..+|+.+.
T Consensus 262 eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~ 328 (581)
T KOG0995|consen 262 ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG 328 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555555555555555443 23333345555666666555555555555555555555553
No 388
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.60 E-value=58 Score=45.08 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=19.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHH
Q psy12680 1807 GFMIVGLSFAGKTCAYRMLSEAL 1829 (2567)
Q Consensus 1807 ~~lLVG~~GSGK~sl~rlla~~l 1829 (2567)
-.+++|++|+||||+...+.+++
T Consensus 29 ~~~i~G~NG~GKStll~aI~~~l 51 (562)
T PHA02562 29 KTLITGKNGAGKSTMLEALTFAL 51 (562)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999887654
No 389
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=91.60 E-value=0.049 Score=69.51 Aligned_cols=154 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred hcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCC
Q psy12680 1332 THQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1332 ~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~ 1411 (2567)
.+..++|++|.+|||||.+++.+ .......+.=|..+++..=...--.+-+...+.
T Consensus 55 r~~ihiLlvGdpg~gKS~ll~~~------------------------~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~ 110 (331)
T PF00493_consen 55 RGNIHILLVGDPGTGKSQLLKYV------------------------AKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEW 110 (331)
T ss_dssp --S--EEEECSCHHCHHHHHHCC------------------------CCT-SSEEEEECCGSTCCCCCEEECCCGGTSSE
T ss_pred ccccceeeccchhhhHHHHHHHH------------------------HhhCCceEEECCCCcccCCccceecccccccee
Q ss_pred ccCCC---CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeee-eeeeeeeecCCCCCCC------
Q psy12680 1412 VYGPP---LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKL-IEIQLMCAMGPPSTGN------ 1481 (2567)
Q Consensus 1412 ~~gp~---~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i-~diq~v~am~Ppggg~------ 1481 (2567)
++-+- +...=|++|||++.-..+.. ..|-+-||++-..=.+......+ .++.++||+||.+|..
T Consensus 111 ~leaGalvlad~GiccIDe~dk~~~~~~------~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~ 184 (331)
T PF00493_consen 111 VLEAGALVLADGGICCIDEFDKMKEDDR------DALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSL 184 (331)
T ss_dssp CEEE-HHHHCTTSEEEECTTTT--CHHH------HHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-C
T ss_pred EEeCCchhcccCceeeecccccccchHH------HHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhh
Q ss_pred ----CCCcchhcccccee--ccCCCHHHHHHHHHHHHHhh
Q psy12680 1482 ----TVTPRFSRHFNQIV--INKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1482 ----~is~Rf~r~f~vi~--i~~p~~~sL~~If~~il~~~ 1515 (2567)
.+++-++..|-+++ .+.|+.+.=..|-..++..|
T Consensus 185 ~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 185 SENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp GCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred HHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
No 390
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.55 E-value=0.51 Score=54.37 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=51.4
Q ss_pred CCCCCCCchhHHHHHHHHhc---CeEEEEeCCCCccHHHHHHhhhhhhh-----------------cCccccccccccCC
Q psy12680 6 EGPAGTGKTETTKDLAKAVA---KLCIVFNCSDSMDYIGLGKFFKGLIA-----------------TGAWACFDEFNRID 65 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG---~~~~vfNCs~~~d~~~m~rif~Gl~q-----------------~GaW~CFDEfNri~ 65 (2567)
.|++||||+...+.+=..-. .|.+.+||+. ++...+...+-|-.. .|-=..+||++.|+
T Consensus 28 ~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~-~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 28 TGETGTGKELLARAIHNNSPRKNGPFISVNCAA-LPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP 106 (168)
T ss_dssp ECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTT-S-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-
T ss_pred EcCCCCcHHHHHHHHHHhhhcccCCeEEEehhh-hhcchhhhhhhccccccccccccccCCceeeccceEEeecchhhhH
Confidence 69999999999999977654 5899999995 455555555545321 34446799999999
Q ss_pred chhHHHHHHHHH
Q psy12680 66 VEVLSVVAQQIL 77 (2567)
Q Consensus 66 ~~vLSvvaqqi~ 77 (2567)
.++-.-+.+-|.
T Consensus 107 ~~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 107 PELQAKLLRVLE 118 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 998887777665
No 391
>PF13245 AAA_19: Part of AAA domain
Probab=91.54 E-value=0.17 Score=50.18 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=22.8
Q ss_pred CCCCCCCchhHHHHHHHHh-------cCeEEEEeCC
Q psy12680 6 EGPAGTGKTETTKDLAKAV-------AKLCIVFNCS 34 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-------G~~~~vfNCs 34 (2567)
.||+|||||+|+.++...+ |+.|+|..-+
T Consensus 16 ~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 7999999998887776655 6778887544
No 392
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.53 E-value=37 Score=51.70 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2319 EGLCKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTL 2380 (2567)
Q Consensus 2319 ~~Lc~WV~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~ 2380 (2567)
..|-.|..+...|........-.+++++.++..+..+++.+...+.+++....+++.+.+..
T Consensus 858 ~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l 919 (1353)
T TIGR02680 858 DHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESV 919 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666556666666666666666666655555555555555555443
No 393
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.48 E-value=0.76 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
|+|.|+.||||||..+.|++.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999985
No 394
>KOG0018|consensus
Probab=91.45 E-value=51 Score=46.87 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=60.5
Q ss_pred hhhhhhhhhhhhhHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHH
Q psy12680 2039 MCQNFHVSTQNLSDEFLVKTSRHVYVTPTSYLELISTFKQLLKVKQEEVLNGKNRYTVGLE--KLDKAASQIAVMREEIE 2116 (2567)
Q Consensus 2039 ~~~~~H~sv~~~s~~~~~~~~r~~yvTP~syL~~l~~f~~ll~~k~~el~~~~~rl~~GL~--KL~ea~~~V~~l~~~L~ 2116 (2567)
.+.....-+.++-++-|...-|+.+++-+.|=+-=. ..-..+|+.+++.++.++.+-|+ |=.++...|+.++..++
T Consensus 740 ~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~--~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~ 817 (1141)
T KOG0018|consen 740 EMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL--QQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVE 817 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHH
Confidence 344444555566667777777778887555644322 67788899999999999988776 44677778888888777
Q ss_pred hhchHHHHHHH
Q psy12680 2117 YLQPFLMVSAA 2127 (2567)
Q Consensus 2117 ~~qp~L~~~~~ 2127 (2567)
.++.+++...+
T Consensus 818 ~~~~~~~~~~~ 828 (1141)
T KOG0018|consen 818 DLEKEIEGLKK 828 (1141)
T ss_pred HHHHhHHhhHH
Confidence 66666554443
No 395
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.36 E-value=0.21 Score=63.73 Aligned_cols=163 Identities=17% Similarity=0.271 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhc---ccC----------CccEEEEEeccCCCCcCccc
Q psy12680 353 EKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWG---ELG----------EHKVEIIVINPKSITMGQLY 419 (2567)
Q Consensus 353 ~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~---~~~----------~~~v~~~~inPKait~~eLy 419 (2567)
++..++ .-++.|++.+.||+|+||+++...+++++.--...+ ..| +.+-..+.+.|.... .+..
T Consensus 11 ~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~-~~~~ 87 (342)
T PRK06964 11 NRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA-AEAP 87 (342)
T ss_pred HHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc-cccc
Confidence 344444 337789999999999999999999999984211000 001 122345667774221 1222
Q ss_pred ccccC----C---CCCCC----cchHHHHHHHHH----hc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccce
Q psy12680 420 GQFDA----V---SHEWS----DGILAVSYRQFA----MS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEI 483 (2567)
Q Consensus 420 G~~d~----~---T~EW~----DGvls~i~R~~~----~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGEr 483 (2567)
|.-|. + ...++ ..|--.=+|+.. .. .....|-+|+| +.|..=.+.-|++| |+|-
T Consensus 88 ~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~-~ae~m~~~AaNaLL---KtLE------ 157 (342)
T PRK06964 88 GAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLY-PAEALNVAAANALL---KTLE------ 157 (342)
T ss_pred ccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEe-chhhcCHHHHHHHH---HHhc------
Confidence 21111 0 01110 112223344432 22 23456777777 68888888888888 3443
Q ss_pred eecCCCCeEEEecCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 484 IALAPTTSLIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 484 I~l~~~~~llFEv~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
-=|+++.||+=+++....=|.-+|||=.|+|.+-. ..-+..||..
T Consensus 158 -EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~---~~~~~~~L~~ 202 (342)
T PRK06964 158 -EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPA---PEAAAAWLAA 202 (342)
T ss_pred -CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCC---HHHHHHHHHH
Confidence 23778999999999999999889999999998643 3456667754
No 396
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.30 E-value=0.12 Score=61.55 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-|.|+|||||||||.++++.--
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3889999999999999987653
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.30 E-value=0.42 Score=55.16 Aligned_cols=94 Identities=18% Similarity=0.132 Sum_probs=52.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccc--------cCCCCCCCcchHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQF--------DAVSHEWSDGILAVSYR 439 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~--------d~~T~EW~DGvls~i~R 439 (2567)
++++||||+||||+...|+..+... +.+|-+...++--.+..+.++.+ -+...+- | .+.+++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-------g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~ 72 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-------GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGK-D--PVSIAK 72 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-------CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCC-C--HHHHHH
Confidence 6889999999999999999887421 23454444454322221111111 0001111 1 233333
Q ss_pred HHHhc-CCCCceEEEeCCCC----CHHHHHHHHhhhc
Q psy12680 440 QFAMS-QNENRKWLIFDGPV----DAIWIENMNSVLD 471 (2567)
Q Consensus 440 ~~~~~-~~~~~~WivfDGpV----Da~WIEnLNSVLD 471 (2567)
+.... ......+||+|.|- |+.|++.|....+
T Consensus 73 ~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~ 109 (173)
T cd03115 73 RAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKR 109 (173)
T ss_pred HHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHh
Confidence 32221 12345699999765 5799999977664
No 398
>KOG0738|consensus
Probab=91.26 E-value=0.056 Score=67.04 Aligned_cols=134 Identities=19% Similarity=0.328 Sum_probs=78.7
Q ss_pred CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHH-------HHHHHHHhhhhc
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSAN-------QTQDIIMSKLDK 1407 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~-------~~q~~ies~lek 1407 (2567)
+++|++||||||||++.++.. .+..+.++|-||.|-.+ .+-+++-.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvA-----------------------TEc~tTFFNVSsstltSKwRGeSEKlvRlLFe---- 298 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVA-----------------------TECGTTFFNVSSSTLTSKWRGESEKLVRLLFE---- 298 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHH-----------------------HhhcCeEEEechhhhhhhhccchHHHHHHHHH----
Confidence 678999999999999887531 12346778888887543 22222211
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCccccccCCCC--------hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQP--------PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~--------~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
.-+-|.|. +||||+|.--.- ..|+-. --|||-|+=.-+|=.+..+ -|-.+||-|-|-
T Consensus 299 -mARfyAPS-----tIFiDEIDslcs-~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k-------~VmVLAATN~PW- 363 (491)
T KOG0738|consen 299 -MARFYAPS-----TIFIDEIDSLCS-QRGGSSEHEASRRVKSELLVQMDGVQGTLENSK-------VVMVLAATNFPW- 363 (491)
T ss_pred -HHHHhCCc-----eeehhhHHHHHh-cCCCccchhHHHHHHHHHHHHhhccccccccce-------eEEEEeccCCCc-
Confidence 12346665 789999764322 222212 2367777644443332111 133456667664
Q ss_pred CCCCCcchhccc-cceeccCCCHHHHHHHHHHHH
Q psy12680 1480 GNTVTPRFSRHF-NQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1480 g~~is~Rf~r~f-~vi~i~~p~~~sL~~If~~il 1512 (2567)
.|+.-|.|.| -.|++|-|+.+.=...+.-.|
T Consensus 364 --diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l 395 (491)
T KOG0738|consen 364 --DIDEALRRRLEKRIYIPLPDAEARSALIKILL 395 (491)
T ss_pred --chHHHHHHHHhhheeeeCCCHHHHHHHHHHhh
Confidence 2555566555 357888888887776666544
No 399
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.25 E-value=0.73 Score=58.85 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=82.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc--C---Cc-----------------------cEEEEEeccCCCCcC
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL--G---EH-----------------------KVEIIVINPKSITMG 416 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~--~---~~-----------------------~v~~~~inPKait~~ 416 (2567)
..||+|.|++|+||||+.++|+..+......... . .. ++.+.. =|-.+|-+
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-lP~~~t~d 103 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVD-LPLGATED 103 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCC-CCCCCccc
Confidence 5689999999999999999999887321100000 0 00 000011 35566777
Q ss_pred cccccccCC----CCCC--CcchHHHHHHHHHhcCCCCceEEEeCC--CCCHHHHHHHHhhhcCCceeEecccceeecCC
Q psy12680 417 QLYGQFDAV----SHEW--SDGILAVSYRQFAMSQNENRKWLIFDG--PVDAIWIENMNSVLDDNKKLCLMSGEIIALAP 488 (2567)
Q Consensus 417 eLyG~~d~~----T~EW--~DGvls~i~R~~~~~~~~~~~WivfDG--pVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~ 488 (2567)
.|+|..|.. +++| ..|++.. .+.-.+.+|- -.++.=...|=.+|+++..-.-..|...+++.
T Consensus 104 ~l~G~~d~~~~l~~g~~~~~~GlL~~----------A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~ 173 (337)
T TIGR02030 104 RVCGTLDIERALTEGVKAFEPGLLAR----------ANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPA 173 (337)
T ss_pred ceecchhHhhHhhcCCEEeecCccee----------ccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCC
Confidence 899988732 3443 6676632 2234666664 34566556666688887644455677777777
Q ss_pred CCeEEEecCCcC-cCCcceeeeceeE
Q psy12680 489 TTSLIFEPQDLE-VASPATVSRCGMI 513 (2567)
Q Consensus 489 ~~~llFEv~dL~-~ASPATVSRcGmV 513 (2567)
.+-++--..-.. ...|+...|.+|.
T Consensus 174 r~iviat~np~eg~l~~~LldRf~l~ 199 (337)
T TIGR02030 174 RFVLVGSGNPEEGELRPQLLDRFGLH 199 (337)
T ss_pred CEEEEeccccccCCCCHHHHhhcceE
Confidence 665555532112 3677788888864
No 400
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.24 E-value=1.1 Score=53.06 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2323 KWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQ----NRIVQEKLQKLQNTLDAKKKELKDLQDELDLCV 2398 (2567)
Q Consensus 2323 ~WV~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~----l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~ 2398 (2567)
-|| +..-.....|.+.++.++++++++++++|+....+ .++++++++..+.+.++..++-++|+++++..+
T Consensus 78 GWV-----~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 78 AWI-----PLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred EeE-----EHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477 45556677788888888888888888888876555 334455555555555556666666666666666
Q ss_pred HHHHHHHHHHhhh
Q psy12680 2399 KKKQRAEDLIGKL 2411 (2567)
Q Consensus 2399 ~rl~rA~~Li~~L 2411 (2567)
.+++.++.-...+
T Consensus 153 ~~~~~l~~~~~~~ 165 (206)
T PRK10884 153 KKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555544444
No 401
>KOG0652|consensus
Probab=91.24 E-value=0.099 Score=61.21 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=44.9
Q ss_pred CCCCceeEEEeccCCCCccc-----ccCCCC----hHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCCCcCc
Q psy12680 927 PPLGKRCVVFVDDVNMPLKE-----EFGAQP----PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTP 997 (2567)
Q Consensus 927 p~~~k~~~~fiDD~nmp~~~-----~~g~q~----~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~~i~~ 997 (2567)
.+.....++|||.+.--... +-|+.. -+|||.|+=. |- .-.++..+||.|--. -+.|
T Consensus 260 AKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG---Fs--------s~~~vKviAATNRvD---iLDP 325 (424)
T KOG0652|consen 260 AKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG---FS--------SDDRVKVIAATNRVD---ILDP 325 (424)
T ss_pred hhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC---CC--------CccceEEEeeccccc---ccCH
Confidence 34556789999998765443 444433 3677777632 22 123455666666322 1222
Q ss_pred ------ccccccceeeeccCCchhhHHHHH
Q psy12680 998 ------RFSRHFNQIVINKFDDDTMVTIFS 1021 (2567)
Q Consensus 998 ------r~~r~f~~~~~~~~~~~~l~~i~~ 1021 (2567)
||.|. +-+|.|+++.-.+|+.
T Consensus 326 ALlRSGRLDRK---IEfP~Pne~aRarIlQ 352 (424)
T KOG0652|consen 326 ALLRSGRLDRK---IEFPHPNEEARARILQ 352 (424)
T ss_pred HHhhccccccc---ccCCCCChHHHHHHHH
Confidence 44443 4568888888777654
No 402
>KOG0729|consensus
Probab=91.23 E-value=0.061 Score=63.00 Aligned_cols=131 Identities=24% Similarity=0.330 Sum_probs=0.0
Q ss_pred CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcc------
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKR------ 1408 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr------ 1408 (2567)
+++|+.||+|||||.+.++. |.-|-..+.+.|-|.|..+
T Consensus 212 kgvllygppgtgktl~arav-----------------------------------anrtdacfirvigselvqkyvgega 256 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAV-----------------------------------ANRTDACFIRVIGSELVQKYVGEGA 256 (435)
T ss_pred CceEEeCCCCCchhHHHHHH-----------------------------------hcccCceEEeehhHHHHHHHhhhhH
Q ss_pred --cCCccCCCCCcE-EEEEEcCCCCcccccc--CCCChHHHHHHHhh----cccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1409 --RKGVYGPPLGKR-CVVFVDDVNMPLKEEF--GAQPPIEILRQWLD----HWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1409 --~~~~~gp~~gK~-~vvFiDDiNmP~~d~y--GtQ~~ielLRQlid----~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
-+-.|--+.+|+ ||+|+|+|.--.-..| |+.--.|.-|-+++ --||=-|. +|..+-|.|-|.+
T Consensus 257 rmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprg--------nikvlmatnrpdt 328 (435)
T KOG0729|consen 257 RMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG--------NIKVLMATNRPDT 328 (435)
T ss_pred HHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCC--------CeEEEeecCCCCC
Q ss_pred CCCCCcchhccccceeccCCCHHHHHHHH
Q psy12680 1480 GNTVTPRFSRHFNQIVINKFDDDTMVTIF 1508 (2567)
Q Consensus 1480 g~~is~Rf~r~f~vi~i~~p~~~sL~~If 1508 (2567)
-.+-.-|=-|.=.-+-..-|+.+.-.+||
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~ 357 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIF 357 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeE
No 403
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=91.23 E-value=1.3 Score=61.42 Aligned_cols=142 Identities=22% Similarity=0.296 Sum_probs=74.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC------cCcccccccCCCCCCCcchHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT------MGQLYGQFDAVSHEWSDGILAVSYR 439 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait------~~eLyG~~d~~T~EW~DGvls~i~R 439 (2567)
..++|+|||||||||+.+++........ +...........+|-..+. ...++|.. .+.+....-+
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~~~~~--~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~-------~~~~~~~a~~ 246 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEAKKLK--HTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSV-------HDPIYQGARR 246 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcc--CCcccCCCCeEEEechhccCCHHHHhHHhcCCc-------cHHHHHHHHH
Confidence 4599999999999999999876643211 0000001123344433221 12455542 2332221111
Q ss_pred HHHhcC----------CCCceEEEeCC--CCCHHHHHHHHhhhcCCceeEeccc------cee--------e--cCCCCe
Q psy12680 440 QFAMSQ----------NENRKWLIFDG--PVDAIWIENMNSVLDDNKKLCLMSG------EII--------A--LAPTTS 491 (2567)
Q Consensus 440 ~~~~~~----------~~~~~WivfDG--pVDa~WIEnLNSVLDDNK~LtL~nG------ErI--------~--l~~~~~ 491 (2567)
...... ....--+++|. .+|+.=.+.|-.+|.+.+.+-. ++ +.+ . -+..+.
T Consensus 247 ~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~-~~~~~~~~~~~~~~ik~~~~~~~~~~~V 325 (615)
T TIGR02903 247 DLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFS-SSYYDPDDPNVPKYIKKLFEEGAPADFV 325 (615)
T ss_pred HHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEee-cceeccCCcccchhhhhhcccCccceEE
Confidence 111100 01123577776 3467777888888887654322 22 111 0 112233
Q ss_pred EEE-ecCCcCcCCcceeeeceeEEecC
Q psy12680 492 LIF-EPQDLEVASPATVSRCGMIYMEP 517 (2567)
Q Consensus 492 llF-Ev~dL~~ASPATVSRcGmVy~~~ 517 (2567)
++. -+.+.....||.-|||..+++.|
T Consensus 326 LI~aTt~~~~~l~~aLrSR~~~i~~~p 352 (615)
T TIGR02903 326 LIGATTRDPEEINPALRSRCAEVFFEP 352 (615)
T ss_pred EEEeccccccccCHHHHhceeEEEeCC
Confidence 333 34567778899999999999886
No 404
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.10 E-value=0.68 Score=62.87 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=28.6
Q ss_pred eeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 103 CSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 103 ~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+-||+|-||. .+|..+++=.+.+.+-.|+...|.+.+.
T Consensus 151 ~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~ 188 (527)
T PRK14969 151 KFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQ 188 (527)
T ss_pred EEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3467786653 4677788888999999999988877654
No 405
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=91.06 E-value=0.45 Score=56.85 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+|||||||||.-+.|++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998865
No 406
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.05 E-value=0.46 Score=64.31 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=42.4
Q ss_pred eEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCCCcCcccccccce---eeec
Q psy12680 933 CVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQ---IVIN 1009 (2567)
Q Consensus 933 ~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~~i~~r~~r~f~~---~~~~ 1009 (2567)
=+++|||+-.-...+... |.|-.+++. .|+.++ -.++++-.+|..-..+.+||.+-|.- +.+.
T Consensus 379 DLLlIDDIq~l~gke~tq----eeLF~l~N~--l~e~gk--------~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~ 444 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQ----EEFFHTFNT--LHNANK--------QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQ 444 (617)
T ss_pred CEEEEehhccccCCHHHH----HHHHHHHHH--HHhcCC--------CEEEecCCChHhhhhccHHHHhhhhcCceEEcC
Confidence 378999997665333221 222222221 122111 13455666776656788888887753 3477
Q ss_pred cCCchhhHHHHHH
Q psy12680 1010 KFDDDTMVTIFSK 1022 (2567)
Q Consensus 1010 ~~~~~~l~~i~~~ 1022 (2567)
.|+.++...|...
T Consensus 445 ~PD~EtR~aIL~k 457 (617)
T PRK14086 445 PPELETRIAILRK 457 (617)
T ss_pred CCCHHHHHHHHHH
Confidence 7777776666544
No 407
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=0.24 Score=66.44 Aligned_cols=94 Identities=16% Similarity=0.250 Sum_probs=53.0
Q ss_pred EEEEEEcCCCCccccc-cC---CCChH-HHHHHH-hhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccccc
Q psy12680 1420 RCVVFVDDVNMPLKEE-FG---AQPPI-EILRQW-LDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQ 1493 (2567)
Q Consensus 1420 ~~vvFiDDiNmP~~d~-yG---tQ~~i-elLRQl-id~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~v 1493 (2567)
.||+|||++.--..-. .| .---. ..|.|+ .+.-||... ..|-+++|-|-|.-=.+-.-|..|....
T Consensus 243 P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~--------~gviviaaTNRpdVlD~ALlRpgRFDRq 314 (596)
T COG0465 243 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN--------EGVIVIAATNRPDVLDPALLRPGRFDRQ 314 (596)
T ss_pred CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC--------CceEEEecCCCcccchHhhcCCCCccee
Confidence 3999999976433322 11 10011 235554 556666632 2355667777554332333477888889
Q ss_pred eeccCCCHHHHHHHHHHHHHhhhcccCCcccc
Q psy12680 1494 IVINKFDDDTMVTIFSKILLWHLDTRGFSKEF 1525 (2567)
Q Consensus 1494 i~i~~p~~~sL~~If~~il~~~l~~~gf~~~v 1525 (2567)
+.++.|+-..-..|.. .|.......+.+
T Consensus 315 I~V~~PDi~gRe~Ilk----vH~~~~~l~~~V 342 (596)
T COG0465 315 ILVELPDIKGREQILK----VHAKNKPLAEDV 342 (596)
T ss_pred eecCCcchhhHHHHHH----HHhhcCCCCCcC
Confidence 9999999876666655 444443344443
No 408
>PRK09183 transposase/IS protein; Provisional
Probab=91.01 E-value=0.084 Score=65.07 Aligned_cols=24 Identities=21% Similarity=0.654 Sum_probs=20.7
Q ss_pred HHhcCCCcccccCCCCcccceeeh
Q psy12680 1330 LVTHQKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1330 ll~~~~pvll~GptGTGKT~~i~~ 1353 (2567)
++..+.+++++||+|||||.+..+
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHH
Confidence 467889999999999999987754
No 409
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.97 E-value=0.18 Score=58.60 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=54.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccc-----cccCCCCC-CCcchHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYG-----QFDAVSHE-WSDGILAVSYRQ 440 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG-----~~d~~T~E-W~DGvls~i~R~ 440 (2567)
-|+|+|||||||||.-+-|++.+... ++..-.+..-++....=+| ++| .++ +.|++...+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~---------hlstgd~~r~~~~~~t~lg~~~k~~i~--~g~lv~d~i~~~~v~~ 70 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP---------HLDTGDILRAAIAERTELGEEIKKYID--KGELVPDEIVNGLVKE 70 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc---------EEcHhHHhHhhhccCChHHHHHHHHHH--cCCccchHHHHHHHHH
Confidence 37999999999999999999985321 1111122222222111111 233 334 456666677766
Q ss_pred HHhcCCCCceEEEeCCCCCHHHHHHHHhhhcC
Q psy12680 441 FAMSQNENRKWLIFDGPVDAIWIENMNSVLDD 472 (2567)
Q Consensus 441 ~~~~~~~~~~WivfDGpVDa~WIEnLNSVLDD 472 (2567)
..........||.++=|=-..-.+.+...|..
T Consensus 71 rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 71 RLDEADCKAGFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred HHHhhcccCeEEEeCCCCcHHHHHHHHHHHHH
Confidence 54433222256666667677777777777755
No 410
>KOG1051|consensus
Probab=90.95 E-value=0.14 Score=71.21 Aligned_cols=160 Identities=13% Similarity=0.227 Sum_probs=99.7
Q ss_pred HHHHHHhcC-CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhcc--ccccceeeccccccCHHHHHHHHH
Q psy12680 1326 LMKLLVTHQ-KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSI--EQWQPLIMNFSAQTSANQTQDIIM 1402 (2567)
Q Consensus 1326 ll~~ll~~~-~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~--~~~~~~~lnfSa~Tts~~~q~~ie 1402 (2567)
+++.|.... .+.+|+|.+|+|||.++.......... +.+. ..-.+.++.|.+...-..-..=+|
T Consensus 199 vi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G-------------~vp~~l~~~~l~~l~~g~l~aGa~~rge~E 265 (898)
T KOG1051|consen 199 VIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATG-------------DVPETLKDKKLIALDFGSLVAGAKRRGEFE 265 (898)
T ss_pred HHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcC-------------CCCccccccceEEEEhhhcccCcccchHHH
Confidence 445555333 477889999999999887544322222 2222 334456666655333333233344
Q ss_pred hhhhcccCCccCCCCCcEEEEEEcCCCCcccc--ccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCC-CC
Q psy12680 1403 SKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKE--EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPP-ST 1479 (2567)
Q Consensus 1403 s~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d--~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Pp-gg 1479 (2567)
.+++...+.+.. .|+.+|+|+||+++-.-. .||+--.+.+|.-.+-+||.| +++|.... +-
T Consensus 266 ~rlk~l~k~v~~--~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~--------------~IGatT~e~Y~ 329 (898)
T KOG1051|consen 266 ERLKELLKEVES--GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLW--------------CIGATTLETYR 329 (898)
T ss_pred HHHHHHHHHHhc--CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeE--------------EEecccHHHHH
Confidence 444444333333 778899999999985443 366777888999999888732 34432211 11
Q ss_pred C-CCCCcchhccccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1480 G-NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1480 g-~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
. ..-.|-|-|+|....++.|+.+....||......
T Consensus 330 k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 330 KCIEKDPALERRWQLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHhhCcchhhCcceeEeccCcccchhhhhhhhhhh
Confidence 1 2236778899999999999998888888765544
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.94 E-value=0.17 Score=53.49 Aligned_cols=22 Identities=36% Similarity=0.249 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCChhHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLS 386 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~ 386 (2567)
...+.|+||+||||||+.++|.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999975
No 412
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.93 E-value=0.71 Score=51.41 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=23.5
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEE
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVF 31 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vf 31 (2567)
..||+|+|||+..+.||+.+|.+++--
T Consensus 4 i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 4 IDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceecc
Confidence 469999999999999999999886543
No 413
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.93 E-value=0.15 Score=58.20 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
--|.++||+||||||++++++--
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcC
Confidence 36899999999999999986653
No 414
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.92 E-value=0.67 Score=61.73 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=24.3
Q ss_pred CCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 117 SELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 117 seLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
..|+..|++=+..|.+-.|+-.-|.+.+.
T Consensus 162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~ 190 (451)
T PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLA 190 (451)
T ss_pred HhcchHHHHhceEEeCCCCCHHHHHHHHH
Confidence 57889999999999999999887777653
No 415
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.91 E-value=76 Score=44.77 Aligned_cols=66 Identities=23% Similarity=0.177 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhc
Q psy12680 2359 LHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQ 2431 (2567)
Q Consensus 2359 L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~ 2431 (2567)
.+.+...|+.+++|=+.|+..+.+-++-|.+|-.-+-.+++.++-++..+-.= ...|.+|+.++..
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~-------d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKK-------DKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 44455566677777777777777777777777777777777777776655432 2346666665543
No 416
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.88 E-value=0.2 Score=48.73 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|++.|++||||||..+.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 417
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=90.87 E-value=0.35 Score=57.46 Aligned_cols=47 Identities=28% Similarity=0.467 Sum_probs=33.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcc
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQL 418 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eL 418 (2567)
.++++|+||||||++++++..++-. ......+++++++||......+
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~-----~~~p~~~~l~iiD~k~~~l~~~ 86 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLAL-----TYSPDDVQLYIIDPKGSDLAPL 86 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHT-----T--TTTEEEEEE-TTSSCCGGG
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHH-----HhcCCccEEEEEcCCccccchh
Confidence 5799999999999999999888742 1123579999999997654444
No 418
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.86 E-value=0.4 Score=61.14 Aligned_cols=141 Identities=21% Similarity=0.228 Sum_probs=90.2
Q ss_pred HHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcc--cC----------CccEEEEEeccCCCCcCcccccccCCCCCC
Q psy12680 362 MIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGE--LG----------EHKVEIIVINPKSITMGQLYGQFDAVSHEW 429 (2567)
Q Consensus 362 ~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~--~~----------~~~v~~~~inPKait~~eLyG~~d~~T~EW 429 (2567)
-++.|+..+.||+|+||+++.+.+++++.--...+. .| +.+-..+.+.|.- .
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~----------------~ 82 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE----------------A 82 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC----------------C
Confidence 567899999999999999999999999831110000 00 1122445565521 0
Q ss_pred CcchHHHHHHHH----Hhc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCc
Q psy12680 430 SDGILAVSYRQF----AMS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASP 504 (2567)
Q Consensus 430 ~DGvls~i~R~~----~~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASP 504 (2567)
...|=-.-+|+. ... ....+|-+|+| ++|..=.+.-|++| |+|-=| |+++.||+-+++....-|
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~-~a~~m~~~aaNaLL---K~LEEP-------p~~~~fiL~t~~~~~ll~ 151 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIE-PAEAMNRNAANALL---KSLEEP-------SGDTVLLLISHQPSRLLP 151 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEEC-ChhhCCHHHHHHHH---HHHhCC-------CCCeEEEEEECChhhCcH
Confidence 111111234443 222 23457888885 57777778888888 233222 457899999999999888
Q ss_pred ceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 505 ATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 505 ATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
.-.|||=.+.|.+-. ..-+..|+..
T Consensus 152 TI~SRc~~~~~~~~~---~~~~~~~L~~ 176 (328)
T PRK05707 152 TIKSRCQQQACPLPS---NEESLQWLQQ 176 (328)
T ss_pred HHHhhceeeeCCCcC---HHHHHHHHHH
Confidence 889999999997632 3355667754
No 419
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.83 E-value=0.19 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.7
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|.|+|||||||+.+-|++-+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 420
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=90.78 E-value=0.26 Score=66.22 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-++|.|||||||||++++|++.+
T Consensus 47 iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999987
No 421
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.77 E-value=0.69 Score=63.52 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=28.9
Q ss_pred eeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 103 CSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 103 ~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+=||+|-+| ..||.-|++-...|.+-.++..-|.+.+-
T Consensus 151 ~fIl~t~~~-----~kl~~tI~SRc~~~~f~~l~~~~i~~~L~ 188 (576)
T PRK14965 151 KFIFATTEP-----HKVPITILSRCQRFDFRRIPLQKIVDRLR 188 (576)
T ss_pred EEEEEeCCh-----hhhhHHHHHhhhhhhcCCCCHHHHHHHHH
Confidence 335667555 57999999988889999898887776653
No 422
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=0.22 Score=66.63 Aligned_cols=63 Identities=27% Similarity=0.412 Sum_probs=49.7
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHH------------HHHHhhhhhhhcCc---cccccccccCCc
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYI------------GLGKFFKGLIATGA---WACFDEFNRIDV 66 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~------------~m~rif~Gl~q~Ga---W~CFDEfNri~~ 66 (2567)
|..||+|+|||...|..|+++||..|-|.-.--=|-. +=|||+.|+.++|. -..+||++.+..
T Consensus 354 cLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s 431 (782)
T COG0466 354 CLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS 431 (782)
T ss_pred EEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccC
Confidence 4579999999999999999999999999866544443 34899999988875 356677776543
No 423
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.71 E-value=3.7 Score=52.95 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHH---
Q psy12680 2343 EALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWS--- 2419 (2567)
Q Consensus 2343 ~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~--- 2419 (2567)
+++.+.++++++.+.++...+++.+++++.|+.++.+.+....+..+.+.+++..++++..+...+..|..++..=.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888888888888888888888889999999999999999988882222
Q ss_pred -HHHHHHHH-------HhhcchhHHHHHHHHHHhhCCCCHHHHHHH
Q psy12680 2420 -STAKMLNE-------KYYQLTGDVLIAAGVVAYLGPFTVAFRQQQ 2457 (2567)
Q Consensus 2420 -~~~~~l~~-------~~~~l~GD~llaaa~isY~G~f~~~~R~~l 2457 (2567)
+.+.-+.. .+.-.+.|+.=+--...|+|..++..|+.+
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i 163 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERI 163 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHH
Confidence 22222222 223357888888888899999999877654
No 424
>PRK01184 hypothetical protein; Provisional
Probab=90.64 E-value=0.25 Score=57.62 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=18.3
Q ss_pred ceEEEeCCCCCHHHHHHHHhhhc
Q psy12680 449 RKWLIFDGPVDAIWIENMNSVLD 471 (2567)
Q Consensus 449 ~~WivfDGpVDa~WIEnLNSVLD 471 (2567)
...+|.||.-...+++.+..+++
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~ 102 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFP 102 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCC
Confidence 46789999888888988877664
No 425
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=90.61 E-value=0.24 Score=57.90 Aligned_cols=24 Identities=38% Similarity=0.554 Sum_probs=21.9
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeE
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLC 28 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~ 28 (2567)
.=||||+||+.+.|.||+.||-+.
T Consensus 9 IDGPagsGKsTvak~lA~~Lg~~y 32 (222)
T COG0283 9 IDGPAGSGKSTVAKILAEKLGFHY 32 (222)
T ss_pred EeCCCccChHHHHHHHHHHhCCCe
Confidence 459999999999999999999865
No 426
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.61 E-value=0.8 Score=63.28 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=29.8
Q ss_pred eeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 103 CSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 103 ~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+-||+|-+| ..||..|++=+..|.+..|+..-|.+.+.
T Consensus 150 ifILaTte~-----~KLl~TI~SRcq~ieF~~L~~eeI~~~L~ 187 (725)
T PRK07133 150 IFILATTEV-----HKIPLTILSRVQRFNFRRISEDEIVSRLE 187 (725)
T ss_pred EEEEEcCCh-----hhhhHHHHhhceeEEccCCCHHHHHHHHH
Confidence 446777554 48999999888999999999988877754
No 427
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=90.48 E-value=0.29 Score=54.41 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhcCCCcccccCCCCcccceeeh
Q psy12680 1321 LRNIALMKLLVTHQKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1321 ~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~ 1353 (2567)
-+..--+..+...+.||+++|++||||+.+++.
T Consensus 8 ~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~ 40 (138)
T PF14532_consen 8 RRLRRQLERLAKSSSPVLITGEPGTGKSLLARA 40 (138)
T ss_dssp HHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHC
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHH
Confidence 345556777888999999999999999987764
No 428
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=90.47 E-value=0.38 Score=61.18 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=25.9
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHHHH
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQLI 392 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~~l 392 (2567)
.|..+.|+|||||||||+.+.|++++...
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 36789999999999999999999998654
No 429
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.46 E-value=55 Score=40.75 Aligned_cols=243 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12680 2073 ISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVKK 2152 (2567)
Q Consensus 2073 l~~f~~ll~~k~~el~~~~~rl~~GL~KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a~~~~~~v~~ 2152 (2567)
+.....-+..-..++......+..--.++......+..|..+...++.+........+.+....+.-...|..+...|..
T Consensus 19 ~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~ 98 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQN 98 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCChH
Q psy12680 2153 DEEVANEQALAAQAMKSVAEGVKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPD 2232 (2567)
Q Consensus 2153 ~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~PP~ 2232 (2567)
-.....+--.......+ ..-.-..........+++.+=++.+.. ...|....|...
T Consensus 99 l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~E-------------------- 154 (264)
T PF06008_consen 99 LQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDE-------------------- 154 (264)
T ss_pred HHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHH--------------------
Q ss_pred HHHHHHHHHHHHhcCCCCCcCCCCCCcccCCcHHHHhhhcch-hhHhhhhccCCCCCCHHHHHHHHhhhcCCCCCCHHHH
Q psy12680 2233 IVKLVMKAVCILKGVKSERVPDAGGQLVEDYWGPSKKLLGDI-KFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVV 2311 (2567)
Q Consensus 2233 ~V~~VmeaVciLlg~~~~~~~~~~~~~~~~~W~~ak~~L~~~-~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~~F~~e~v 2311 (2567)
|..|..+|+.. .++....+-. ..+-+.+...| ..|
T Consensus 155 -------------------------------l~~A~~LL~~v~~~~~~~~~~~-~~l~~~i~~~L-~~~----------- 190 (264)
T PF06008_consen 155 -------------------------------LKEAEDLLSRVQKWFQKPQQEN-ESLAEAIRDDL-NDY----------- 190 (264)
T ss_pred -------------------------------HHHHHHHHHHHHHHHhhHHHhh-HHHHHHHHHHH-HHH-----------
Q ss_pred HHHhHhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2312 KKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQ 2391 (2567)
Q Consensus 2312 ~~aS~Aa~~Lc~WV~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~ 2391 (2567)
..+|..++..+.+|.....+...-....+..+..++.+......+...+.
T Consensus 191 ------------------------------~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~ 240 (264)
T PF06008_consen 191 ------------------------------NAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVS 240 (264)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy12680 2392 DELDLCVKKKQRAEDLIGKLGG 2413 (2567)
Q Consensus 2392 ~~~~~~~~rl~rA~~Li~~L~~ 2413 (2567)
..+...+.-|..|..|+..+..
T Consensus 241 ~~L~~a~~~L~~a~~ll~~~~~ 262 (264)
T PF06008_consen 241 ETLKEAEDLLDQANDLLQEMQD 262 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
No 430
>PRK09183 transposase/IS protein; Provisional
Probab=90.43 E-value=0.46 Score=58.66 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=43.3
Q ss_pred CCCCCCCCchhHHHHHHHH---hcCeEEEEeCCCCccH-H------HHHHhhhhhhhcCccccccccccCCc
Q psy12680 5 PEGPAGTGKTETTKDLAKA---VAKLCIVFNCSDSMDY-I------GLGKFFKGLIATGAWACFDEFNRIDV 66 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~---lG~~~~vfNCs~~~d~-~------~m~rif~Gl~q~GaW~CFDEfNri~~ 66 (2567)
..||+|||||.....||.. -|..|..+++.+-++. . .+++++......=.-.++|||--++.
T Consensus 107 l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 107 LLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPF 178 (259)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCC
Confidence 4699999999999999766 4889999998764421 1 24455554333334689999976543
No 431
>PRK04132 replication factor C small subunit; Provisional
Probab=90.40 E-value=1 Score=63.39 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=82.4
Q ss_pred CCCCCchhHHHHHHHHh-----cCeEEEEeCCCCccHHHHHHhhhhhhhcCc-------cccccccccCCchhHHHHHHH
Q psy12680 8 PAGTGKTETTKDLAKAV-----AKLCIVFNCSDSMDYIGLGKFFKGLIATGA-------WACFDEFNRIDVEVLSVVAQQ 75 (2567)
Q Consensus 8 PaGTGKTEtvK~Lak~l-----G~~~~vfNCs~~~d~~~m~rif~Gl~q~Ga-------W~CFDEfNri~~~vLSvvaqq 75 (2567)
|.+.|||.++..||+.+ +..++-+|+|+......+-++++..++... =.-+||..+++.+.
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~A------- 646 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA------- 646 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHH-------
Confidence 99999999999999998 678999999997777888888888775422 44589999998632
Q ss_pred HHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 76 ILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 76 i~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
|+|+..-.+. -.++|-++++-|+- ..+++-|++=.+.+.+-.|+-.-|.+.+-
T Consensus 647 ----QnALLk~lEe---------p~~~~~FILi~N~~----~kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 647 ----QQALRRTMEM---------FSSNVRFILSCNYS----SKIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ----HHHHHHHhhC---------CCCCeEEEEEeCCh----hhCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 3333211110 01123334455543 47899999999999999999888877743
No 432
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=90.37 E-value=0.17 Score=56.09 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~ 387 (2567)
=|||+||+||||||+.+.|..
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 389999999999998888766
No 433
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.36 E-value=0.84 Score=58.88 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
--|.++|||||||||.++.|...+.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3488999999999999999988764
No 434
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.34 E-value=1.1 Score=61.25 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=70.2
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhccc--C----------CccEEEEEeccCCCCcCcccccccCCCCCCC
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGEL--G----------EHKVEIIVINPKSITMGQLYGQFDAVSHEWS 430 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~--~----------~~~v~~~~inPKait~~eLyG~~d~~T~EW~ 430 (2567)
++.|.+++.||+|+||||+.+.|++++.--...... + +....++.||+ . ..
T Consensus 36 ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~--------------a---~~ 98 (624)
T PRK14959 36 RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG--------------A---SN 98 (624)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEec--------------c---cc
Confidence 346999999999999999999999998421000000 0 01111222322 1 11
Q ss_pred cchHHHHHHHH---Hh--cCCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcc
Q psy12680 431 DGILAVSYRQF---AM--SQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPA 505 (2567)
Q Consensus 431 DGvls~i~R~~---~~--~~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPA 505 (2567)
.||= -+|+. +. .....++.||+|-. |..=.+.+|++|.- |-= -++++.|||=+.+.....+.
T Consensus 99 ~~Id--~iR~L~~~~~~~p~~g~~kVIIIDEa-d~Lt~~a~naLLk~---LEE-------P~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 99 RGID--DAKRLKEAIGYAPMEGRYKVFIIDEA-HMLTREAFNALLKT---LEE-------PPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred cCHH--HHHHHHHHHHhhhhcCCceEEEEECh-HhCCHHHHHHHHHH---hhc-------cCCCEEEEEecCChhhhhHH
Confidence 2321 22322 21 12345689999953 43334445555521 000 13567888877776666666
Q ss_pred eeeeceeEEecC
Q psy12680 506 TVSRCGMIYMEP 517 (2567)
Q Consensus 506 TVSRcGmVy~~~ 517 (2567)
-.|||-.+.|.+
T Consensus 166 I~SRcq~i~F~p 177 (624)
T PRK14959 166 IVSRCQHFTFTR 177 (624)
T ss_pred HHhhhhccccCC
Confidence 689999888764
No 435
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.14 E-value=0.88 Score=62.40 Aligned_cols=150 Identities=16% Similarity=0.204 Sum_probs=82.1
Q ss_pred CcccccCCCCcccceeehhhhhhcccccccc-ch-------hhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhc
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRS-GF-------QHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~-~~-------~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lek 1407 (2567)
..||+||+|+|||++.+..-..+.-...-.+ +. -.....-.......++.++=++.+.-.++..+++. ++
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~-~~- 125 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES-VR- 125 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH-HH-
Confidence 5899999999999988643222111000000 00 00000000111223344444556777777777654 32
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcch
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRF 1487 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf 1487 (2567)
+.|..+++=||+||+++|=..+ ....||+-+=+.- ..+.||.+++-+ ..+.+-+
T Consensus 126 -----~~P~~a~~KVvIIDEad~Ls~~-----a~naLLKtLEePp-------------~~~~fIl~tte~---~kll~tI 179 (598)
T PRK09111 126 -----YRPVSARYKVYIIDEVHMLSTA-----AFNALLKTLEEPP-------------PHVKFIFATTEI---RKVPVTV 179 (598)
T ss_pred -----hchhcCCcEEEEEEChHhCCHH-----HHHHHHHHHHhCC-------------CCeEEEEEeCCh---hhhhHHH
Confidence 4566667777889997664332 2334444432211 124455444322 2255557
Q ss_pred hccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1488 SRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1488 ~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+.++.+..++.+.+......++.
T Consensus 180 ~SRcq~~~f~~l~~~el~~~L~~i~~ 205 (598)
T PRK09111 180 LSRCQRFDLRRIEADVLAAHLSRIAA 205 (598)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHH
Confidence 77778888999999999988888764
No 436
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.14 E-value=0.61 Score=59.17 Aligned_cols=150 Identities=19% Similarity=0.272 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcc--cC----------CccEEEEEeccCCCCcCccc
Q psy12680 352 LEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGE--LG----------EHKVEIIVINPKSITMGQLY 419 (2567)
Q Consensus 352 i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~--~~----------~~~v~~~~inPKait~~eLy 419 (2567)
-....+.++.-++.|+.++.||+|+||+++.+.+++++.--...+. .| +.+-..+.+.|..
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~------- 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID------- 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc-------
Confidence 3456666777788999999999999999999999999732110000 00 1223445555520
Q ss_pred ccccCCCCCCCcchHHHHHHHHH----hc-CCCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEE
Q psy12680 420 GQFDAVSHEWSDGILAVSYRQFA----MS-QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIF 494 (2567)
Q Consensus 420 G~~d~~T~EW~DGvls~i~R~~~----~~-~~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llF 494 (2567)
| ..|--.-+|+.. .. ....+|-+|+|. +|..=.+.-|++| |+|-=| |+++-||+
T Consensus 84 ~----------~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~-a~~m~~~AaNaLL---KtLEEP-------p~~~~fiL 142 (325)
T PRK06871 84 N----------KDIGVDQVREINEKVSQHAQQGGNKVVYIQG-AERLTEAAANALL---KTLEEP-------RPNTYFLL 142 (325)
T ss_pred C----------CCCCHHHHHHHHHHHhhccccCCceEEEEec-hhhhCHHHHHHHH---HHhcCC-------CCCeEEEE
Confidence 0 012122345432 22 234567888874 6777788888888 344322 66788999
Q ss_pred ecCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 495 EPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 495 Ev~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
-+++....-|.-.|||=.+.|.|-. ..-+..||..
T Consensus 143 ~t~~~~~llpTI~SRC~~~~~~~~~---~~~~~~~L~~ 177 (325)
T PRK06871 143 QADLSAALLPTIYSRCQTWLIHPPE---EQQALDWLQA 177 (325)
T ss_pred EECChHhCchHHHhhceEEeCCCCC---HHHHHHHHHH
Confidence 8999888888889999999998743 2345667754
No 437
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.13 E-value=91 Score=42.74 Aligned_cols=99 Identities=24% Similarity=0.348 Sum_probs=62.9
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-----H
Q psy12680 2338 VGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKEL-----KDLQDELDLCVKKKQRAED-----L 2407 (2567)
Q Consensus 2338 V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek-----~~L~~~~~~~~~rl~rA~~-----L 2407 (2567)
+.-+++.++.++.+|..|+..+++...+-..+...+..-+..|+.+..++ .++.+++..++.+|+-|.+ .
T Consensus 530 Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaV 609 (739)
T PF07111_consen 530 LQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAV 609 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777777777777777777777777777777555443 2345566667777666543 2
Q ss_pred H------hhhhhhhcc-----------HHHHHHHHHHHhhcchhHH
Q psy12680 2408 I------GKLGGEKER-----------WSSTAKMLNEKYYQLTGDV 2436 (2567)
Q Consensus 2408 i------~~L~~Ek~R-----------W~~~~~~l~~~~~~l~GD~ 2436 (2567)
+ .....||+| |.+....+..+++-+--|.
T Consensus 610 VsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerdk 655 (739)
T PF07111_consen 610 VSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELERDK 655 (739)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 123455555 6677777777777765554
No 438
>PRK13695 putative NTPase; Provisional
Probab=90.12 E-value=1.1 Score=51.83 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCCceEEEeCC-----CCCHHHHHHHHhhhcCCceeEecccc
Q psy12680 446 NENRKWLIFDG-----PVDAIWIENMNSVLDDNKKLCLMSGE 482 (2567)
Q Consensus 446 ~~~~~WivfDG-----pVDa~WIEnLNSVLDDNK~LtL~nGE 482 (2567)
.....++++|= ..++.|.+.++.+++.++.+-+...+
T Consensus 94 l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~ 135 (174)
T PRK13695 94 LEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHR 135 (174)
T ss_pred cCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECc
Confidence 34567899993 44788999999999877776665554
No 439
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=90.10 E-value=0.87 Score=59.51 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
...|+|+||||||||++.+.|++.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 3579999999999999999999766
No 440
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.02 E-value=0.22 Score=53.75 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSD 35 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~ 35 (2567)
..||+|+|||+..|.||+.+|.++ +++++
T Consensus 4 I~G~~gsGKST~a~~La~~~~~~~--i~~d~ 32 (121)
T PF13207_consen 4 ISGPPGSGKSTLAKELAERLGFPV--ISMDD 32 (121)
T ss_dssp EEESTTSSHHHHHHHHHHHHTCEE--EEEHH
T ss_pred EECCCCCCHHHHHHHHHHHHCCeE--EEecc
Confidence 369999999999999999999664 45554
No 441
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.89 E-value=0.21 Score=57.95 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-++|+|||||||||+.+.|+..+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998876
No 442
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.82 E-value=0.7 Score=59.07 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=57.4
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC-c------Cccccc-ccCCCCCCCcchHH
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT-M------GQLYGQ-FDAVSHEWSDGILA 435 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait-~------~eLyG~-~d~~T~EW~DGvls 435 (2567)
-..-++++||+|+||||....|+..+.. . +.+|-....+|--+. . .+..|. +-..+ ...-+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~------~-g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~---dp~dL~ 274 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLK------Q-NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT---SPAELE 274 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------c-CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecC---CHHHHH
Confidence 3567899999999999999999866521 1 245666666664331 1 222221 00000 111122
Q ss_pred HHHHHHHhcCCCCceEEEeCCC----CCHHHHHHHHhhhcC
Q psy12680 436 VSYRQFAMSQNENRKWLIFDGP----VDAIWIENMNSVLDD 472 (2567)
Q Consensus 436 ~i~R~~~~~~~~~~~WivfDGp----VDa~WIEnLNSVLDD 472 (2567)
..++.+.. ..+...|+.|.+ .|..|++-|...++.
T Consensus 275 ~al~~l~~--~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 275 EAVQYMTY--VNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred HHHHHHHh--cCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 33333221 123568999966 689999999998875
No 443
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.82 E-value=0.21 Score=58.90 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.1
Q ss_pred CCcccccCCCCcccceeehhhh
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSIL 1356 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~ 1356 (2567)
.+|||.|.-|||||++||+++.
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~ 107 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLN 107 (287)
T ss_pred cceEEecCCCCChHHHHHHHHH
Confidence 4689999999999999998653
No 444
>KOG1533|consensus
Probab=89.82 E-value=0.32 Score=56.95 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=29.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccC
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPK 411 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPK 411 (2567)
+-|.+++|||||||||-..-..+-++.+ +.++.+.-++|-
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~-------gr~~~vVNLDPa 41 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAI-------GRPVAVVNLDPA 41 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHh-------CCceEEEecCCc
Confidence 4588999999999999888877777654 345555555554
No 445
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.75 E-value=1.3 Score=61.15 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=20.4
Q ss_pred CCCCCCCCchhHHHHHHHHhcC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAK 26 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~ 26 (2567)
..||.|||||.+++.||+.|++
T Consensus 43 f~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 43 FTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred EECCCCCChHHHHHHHHHHhcC
Confidence 3799999999999999999976
No 446
>KOG0971|consensus
Probab=89.73 E-value=1.1e+02 Score=42.88 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=20.1
Q ss_pred HhCCCC-CCchhhhhHHHhhcCCCcceeecCchhH
Q psy12680 2492 NIFGLP-CDSFSIDNGIIIKNSRRWPLMIDPQEQA 2525 (2567)
Q Consensus 2492 ~~~GLP-~D~~SiENaiIi~~s~r~PLlIDPq~Qa 2525 (2567)
..+|=| .|.-+++|-+++..+.-|-==||-|..+
T Consensus 554 es~q~~s~~~et~dyk~~fa~skayaraie~Qlrq 588 (1243)
T KOG0971|consen 554 ESQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQ 588 (1243)
T ss_pred HhcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444 3456677877777666666556655443
No 447
>KOG0989|consensus
Probab=89.72 E-value=0.18 Score=61.48 Aligned_cols=68 Identities=26% Similarity=0.360 Sum_probs=41.0
Q ss_pred CCCCCCCchhHHHHHHHHhcC----eEEEE--eCCCCccHHHHHHhhhhhhhcCc--------------cccccccccCC
Q psy12680 6 EGPAGTGKTETTKDLAKAVAK----LCIVF--NCSDSMDYIGLGKFFKGLIATGA--------------WACFDEFNRID 65 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~----~~~vf--NCs~~~d~~~m~rif~Gl~q~Ga--------------W~CFDEfNri~ 65 (2567)
+||.|||||.|+..+|++|-. +|=|. |-|+-.......-=.++.++.-. =.-|||..-+.
T Consensus 63 yGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt 142 (346)
T KOG0989|consen 63 YGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT 142 (346)
T ss_pred eCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh
Confidence 799999999999999999854 34333 55554443333222333333222 23578877766
Q ss_pred chhHHHHH
Q psy12680 66 VEVLSVVA 73 (2567)
Q Consensus 66 ~~vLSvva 73 (2567)
.+.=+++.
T Consensus 143 sdaq~aLr 150 (346)
T KOG0989|consen 143 SDAQAALR 150 (346)
T ss_pred HHHHHHHH
Confidence 66554443
No 448
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.68 E-value=2.4 Score=55.18 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=57.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC-cCcccccccCCCCCC---CcchHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT-MGQLYGQFDAVSHEW---SDGILAVSYRQ 440 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait-~~eLyG~~d~~T~EW---~DGvls~i~R~ 440 (2567)
+.-++++||+|+||||...-|+..+..- . +.+|.+...+|--.. ..+|-.+.+. ... ...-+..+ ++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-----~-G~~V~Lit~Dt~R~aA~eQLk~yAe~--lgvp~~~~~~~~~l-~~ 293 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-----M-GKSVSLYTTDNYRIAAIEQLKRYADT--MGMPFYPVKDIKKF-KE 293 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-----c-CCeEEEecccchhhhHHHHHHHHHHh--cCCCeeehHHHHHH-HH
Confidence 3458899999999999999999765311 1 235555555552221 1222111110 001 00002222 22
Q ss_pred HHhcCCCCceEEEeC--C--CCCHHHHHHHHhhhc-------CCceeEeccc
Q psy12680 441 FAMSQNENRKWLIFD--G--PVDAIWIENMNSVLD-------DNKKLCLMSG 481 (2567)
Q Consensus 441 ~~~~~~~~~~WivfD--G--pVDa~WIEnLNSVLD-------DNK~LtL~nG 481 (2567)
... ..+...|++| | |-|..=++.|..+++ ....|+|+.+
T Consensus 294 ~l~--~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt 343 (432)
T PRK12724 294 TLA--RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSST 343 (432)
T ss_pred HHH--hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 222 2345789999 5 467888888888774 1456666644
No 449
>KOG0991|consensus
Probab=89.67 E-value=0.24 Score=57.68 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+++.||||+||||++.+|+++|
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHH
Confidence 36899999999999999999987
No 450
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=89.59 E-value=0.76 Score=61.67 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=76.3
Q ss_pred CCCCCCCCchhHHHHHHHH---hcCeEEEEeCCCCccHHHHHHhhhhh------------------hhcCcccccccccc
Q psy12680 5 PEGPAGTGKTETTKDLAKA---VAKLCIVFNCSDSMDYIGLGKFFKGL------------------IATGAWACFDEFNR 63 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~---lG~~~~vfNCs~~~d~~~m~rif~Gl------------------~q~GaW~CFDEfNr 63 (2567)
+.|++||||+...+.+... .+.+++.+||..--+ ..+...+.|- +..|. ..+||+.+
T Consensus 171 i~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt-l~ld~i~~ 248 (457)
T PRK11361 171 ISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGT-LLLDEIGE 248 (457)
T ss_pred EEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCE-EEEechhh
Confidence 5799999999999988665 457899999997543 3344443331 23333 68999999
Q ss_pred CCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCC---CCCCchhhHhhccccccccCCCHH
Q psy12680 64 IDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYA---GRSELPDNLKSLFRTVAMMVPDYA 138 (2567)
Q Consensus 64 i~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYa---GRseLPdnLk~lFRpvam~~PD~~ 138 (2567)
++.++...+.+.+..- .+.-.|..-....++-|..|.|.... ..-.+.+.|=..+-++.+.+|...
T Consensus 249 l~~~~q~~L~~~l~~~---------~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLr 317 (457)
T PRK11361 249 MPLVLQAKLLRILQER---------EFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLR 317 (457)
T ss_pred CCHHHHHHHHHHHhcC---------cEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChh
Confidence 9998877766655431 12222332334446778888886531 122344444444556666666543
No 451
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.51 E-value=1 Score=59.35 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=19.7
Q ss_pred CCCCCCCchhHHHHHHHHhcC
Q psy12680 6 EGPAGTGKTETTKDLAKAVAK 26 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~ 26 (2567)
.||.|+|||.+++.+|+.+..
T Consensus 44 ~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 44 SGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred ECCCCCCHHHHHHHHHHHhcC
Confidence 699999999999999999965
No 452
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.49 E-value=2.4 Score=54.73 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=22.0
Q ss_pred HHhceE-EEEEccCCCChhHHHHHHHHHH
Q psy12680 362 MIVRWG-FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 362 ~~~rhG-vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
+..+.| |+++|||||||||.++.|...+
T Consensus 118 ~~~~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 118 AERPRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred HhhcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 333444 5799999999999999988765
No 453
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=89.47 E-value=0.25 Score=57.56 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.++|||||||||+.+.|++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999875
No 454
>KOG2004|consensus
Probab=89.46 E-value=0.94 Score=60.58 Aligned_cols=198 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGV 1412 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~ 1412 (2567)
.|+=..|+||||.|||.+.+..- ..|...|..|=+..+.. ++-+.-.|+++
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA------~ALnRkFfRfSvGG~tD-----------------------vAeIkGHRRTY 487 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIA------RALNRKFFRFSVGGMTD-----------------------VAEIKGHRRTY 487 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHH------HHhCCceEEEecccccc-----------------------HHhhcccceee
Q ss_pred cCCCCCcEE-----------EEEEcCCCCccccccCCCChHHHHHHHhh---cccccccCcceeeeeeeeeeeeecCCCC
Q psy12680 1413 YGPPLGKRC-----------VVFVDDVNMPLKEEFGAQPPIEILRQWLD---HWMWYDRKDVVAVKLIEIQLMCAMGPPS 1478 (2567)
Q Consensus 1413 ~gp~~gK~~-----------vvFiDDiNmP~~d~yGtQ~~ielLRQlid---~~g~ydr~~~~~~~i~diq~v~am~Ppg 1478 (2567)
-|.-+||-+ ++.+|++.=-....-|. |-.-|=.++| ...|.|.==..-..+..|-|||+.|.-
T Consensus 488 VGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGD--PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i- 564 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGD--PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI- 564 (906)
T ss_pred eccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCC--hHHHHHHhcChhhccchhhhccccccchhheEEEEecccc-
Q ss_pred CCCCCCcchhccccceeccCCCHHHHHHHHHHHH-HhhhcccCCcccchhHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q psy12680 1479 TGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKIL-LWHLDTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYL 1557 (2567)
Q Consensus 1479 gg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il-~~~l~~~gf~~~v~~~~~~lv~ati~ly~~v~~~~lPTp~k~HY~ 1557 (2567)
.+|++-++...-+|-++....+.=..|-..+| ...+...|...+.-++.+..+.+.|+-|-+-.
T Consensus 565 --dtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEa------------- 629 (906)
T KOG2004|consen 565 --DTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREA------------- 629 (906)
T ss_pred --ccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHH-------------
Q ss_pred cCchhHHHHHHHHhccchHHH
Q psy12680 1558 FNLRDFARVIQGVLLSVPEAI 1578 (2567)
Q Consensus 1558 FnlRDlsrv~qGll~~~~~~i 1578 (2567)
+.|.|-|=+.-|++...-.+
T Consensus 630 -GVRnLqk~iekI~Rk~Al~v 649 (906)
T KOG2004|consen 630 -GVRNLQKQIEKICRKVALKV 649 (906)
T ss_pred -hHHHHHHHHHHHHHHHHHHH
No 455
>KOG0962|consensus
Probab=89.45 E-value=1.4e+02 Score=44.04 Aligned_cols=284 Identities=15% Similarity=0.151 Sum_probs=127.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2064 VTPTSYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEA 2143 (2567)
Q Consensus 2064 vTP~syL~~l~~f~~ll~~k~~el~~~~~rl~~GL~KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a 2143 (2567)
.|+-.+++-+--=.....++..++..+...-..|...+.|-..+...++.++..+..+++..+++....+..+.....-.
T Consensus 784 ~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~ 863 (1294)
T KOG0962|consen 784 QTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLR 863 (1294)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555443333334444444444444444566677777777777777776666666655555555444443332211
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHhhccCCCc
Q psy12680 2144 AIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQALAAQAMKSECEEILSEAIPI---LEAAEAALNTLTSND 2220 (2567)
Q Consensus 2144 ~~~~~~v~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~e~e~~L~~a~P~---L~~A~~Al~~L~k~d 2220 (2567)
. +..+++..+. ..-+.+.+-++.+.+.+.....+.......++.+.|. |++|+.+-..+++.-
T Consensus 864 ~----------e~k~~~~~~~----~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~ 929 (1294)
T KOG0962|consen 864 N----------ELKEEKQKIE----RSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNER 929 (1294)
T ss_pred H----------HHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHh
Confidence 1 1111111111 1111222233444444455555566666666666654 455555555444331
Q ss_pred -hHHHhhcCCChHHHHHHHHHHHHHhcCCCCCcCCCCCCcccCCcHHHHhhhcchhhHhhhhccCCCCCCHHHHHHHHhh
Q psy12680 2221 -ITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDE 2299 (2567)
Q Consensus 2221 -l~Eirs~~~PP~~V~~VmeaVciLlg~~~~~~~~~~~~~~~~~W~~ak~~L~~~~Fl~~L~~fDkd~I~~~~~~~l~~~ 2299 (2567)
. +.+- --.-+..+-+.+-.|.+ .. ........|-++++..+.+..++..
T Consensus 930 ~~-~~~~---aqk~~~~ine~~s~l~~-----------------------~~---~~~~~~~~~~~~~~~~~~l~~~~e~ 979 (1294)
T KOG0962|consen 930 NT-SEKL---AQKKRNDINEKVSLLHQ-----------------------IY---KLNECFEQYGFDDLRIAQLSESEEH 979 (1294)
T ss_pred hH-HHHH---HHHHHHHHHHHHHHHHH-----------------------HH---HhHHHHHHHhhhhhchHHHHHHHHH
Confidence 1 0000 00011122222111111 11 1111122222334445555555432
Q ss_pred hcCCCCCCHHHHHHHh---HhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2300 FLSREDFDPEVVKKSS---TAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKL 2376 (2567)
Q Consensus 2300 ~~~~~~F~~e~v~~aS---~Aa~~Lc~WV~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L 2376 (2567)
.... ...++.++ .--.-+-.|..+...|.....+++-...++.....+...+. ...+.++...|
T Consensus 980 l~~~----~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~---------~~~~~ee~~~L 1046 (1294)
T KOG0962|consen 980 LEER----DNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEAD---------IKSVKEERVKL 1046 (1294)
T ss_pred HHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHH
Confidence 2111 12333333 23345778999999998876666655555555555444333 33344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2377 QNTLDAKKKELKDLQDELDLCVKKKQRA 2404 (2567)
Q Consensus 2377 ~~~~~~~~~ek~~L~~~~~~~~~rl~rA 2404 (2567)
+.+++....++..+..++...+....+.
T Consensus 1047 ~~~~~~l~se~~~~lg~~ke~e~~i~~~ 1074 (1294)
T KOG0962|consen 1047 EEEREKLSSEKNLLLGEMKQYESQIKKL 1074 (1294)
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHHHH
Confidence 5555555555544444444444444433
No 456
>PRK03839 putative kinase; Provisional
Probab=89.44 E-value=0.26 Score=57.37 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
|+|+|+|||||||+-+.|++.+.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999873
No 457
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.34 E-value=99 Score=42.06 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=41.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhchHH
Q psy12680 2064 VTPTSYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFL 2122 (2567)
Q Consensus 2064 vTP~syL~~l~~f~~ll~~k~~el~~~~~rl~~GL~KL~ea~~~V~~l~~~L~~~qp~L 2122 (2567)
.-|...+.+|+.|...-..-.+.++..-+.++..-..|.+-.....++..+++-++=++
T Consensus 136 l~~~~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~ 194 (557)
T COG0497 136 LKPELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQL 194 (557)
T ss_pred cChHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999998887766655777777777777777766666666666555444333
No 458
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=89.33 E-value=0.33 Score=61.41 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=26.8
Q ss_pred HHHHHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 358 IYEMMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 358 Lye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|...+.-|-.++++|+|||||||.++.|...+
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44455567789999999999999999998876
No 459
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.33 E-value=0.84 Score=61.45 Aligned_cols=146 Identities=16% Similarity=0.272 Sum_probs=84.0
Q ss_pred cccCCccCCCCCc-----------EEEEEEcCCCCccccccCCCChHHHHHHHhh---cccccccCcce-eeeeeeeeee
Q psy12680 1407 KRRKGVYGPPLGK-----------RCVVFVDDVNMPLKEEFGAQPPIEILRQWLD---HWMWYDRKDVV-AVKLIEIQLM 1471 (2567)
Q Consensus 1407 kr~~~~~gp~~gK-----------~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid---~~g~ydr~~~~-~~~i~diq~v 1471 (2567)
-+|+++.|.-+|| .=|+.+|+|.=-..+..|. |.-+||--| | ..-|-|. -++ -..+.+|-|+
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGD-PaSALLEVL-DPEQN~~F~Dh-YLev~yDLS~VmFi 470 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGD-PASALLEVL-DPEQNNTFSDH-YLEVPYDLSKVMFI 470 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCC-hHHHHHhhc-CHhhcCchhhc-cccCccchhheEEE
Confidence 3455666776543 3467788877666665553 555555433 1 1122221 111 1356789999
Q ss_pred eecCCCCCCCCCCcchhccccceeccCCCHHHHHHHHHHHHH-hhhcccCCcccchhHHHHHHHHHHHHHHHHHhhcCCC
Q psy12680 1472 CAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL-WHLDTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPT 1550 (2567)
Q Consensus 1472 ~am~Ppggg~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~-~~l~~~gf~~~v~~~~~~lv~ati~ly~~v~~~~lPT 1550 (2567)
|+.|.- ++++.-++...-+|-++....+.=..|-...|- ..+...|..+.--...+......|+-|.+-
T Consensus 471 aTANsl---~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTRE------- 540 (782)
T COG0466 471 ATANSL---DTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTRE------- 540 (782)
T ss_pred eecCcc---ccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHh-------
Confidence 998854 346666788888999988888888777766442 222334444322223344445555555433
Q ss_pred CCCcccccCchhHHHHHHHHhc
Q psy12680 1551 PTKSHYLFNLRDFARVIQGVLL 1572 (2567)
Q Consensus 1551 p~k~HY~FnlRDlsrv~qGll~ 1572 (2567)
=+.|.|.|-+.-+++
T Consensus 541 -------AGVR~LeR~i~ki~R 555 (782)
T COG0466 541 -------AGVRNLEREIAKICR 555 (782)
T ss_pred -------hhhhHHHHHHHHHHH
Confidence 256777777776665
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.32 E-value=0.25 Score=54.92 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
+.|+|||||||||+.+.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999998764
No 461
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.31 E-value=1.2 Score=55.09 Aligned_cols=28 Identities=36% Similarity=0.257 Sum_probs=22.2
Q ss_pred HHhce-EEEEEccCCCChhHHHHHHHHHH
Q psy12680 362 MIVRW-GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 362 ~~~rh-GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
+..+. -++|+||+|+||||+.+.+...+
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 33334 47899999999999999987765
No 462
>KOG1534|consensus
Probab=89.24 E-value=0.39 Score=55.28 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=33.4
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT 414 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait 414 (2567)
.|-++++.||+||||||-..++.+-...+ +..+++.-++|-|..
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~-------gRs~~vVNLDPAae~ 45 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETV-------GRSVHVVNLDPAAEH 45 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhh-------CceeEEeecCHHHHh
Confidence 46789999999999999999888776433 355666667776654
No 463
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.22 E-value=0.37 Score=59.65 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=25.3
Q ss_pred HHHHHHhceE-EEEEccCCCChhHHHHHHHHHH
Q psy12680 358 IYEMMIVRWG-FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 358 Lye~~~~rhG-vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|.+.+...+| |+++|||||||||.++.|...+
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3445555666 7899999999999999887765
No 464
>KOG1547|consensus
Probab=89.18 E-value=0.5 Score=55.23 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 328 DYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 328 ~~~~l~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
..+.+.+.++.-+-+.|++. -||+||++|.||||.++||.++.
T Consensus 28 GidtI~~Qm~~k~mk~GF~F-------------------NIMVVgqSglgkstlinTlf~s~ 70 (336)
T KOG1547|consen 28 GIDTIIEQMRKKTMKTGFDF-------------------NIMVVGQSGLGKSTLINTLFKSH 70 (336)
T ss_pred cHHHHHHHHHHHHHhccCce-------------------EEEEEecCCCCchhhHHHHHHHH
Confidence 34556666777777777765 58999999999999999999985
No 465
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.04 E-value=0.36 Score=60.83 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=26.6
Q ss_pred HHHHHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 358 IYEMMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 358 Lye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|...+.-+-.++++||+||||||+.+.|...+
T Consensus 125 L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 125 LREAVLARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34445567899999999999999999998776
No 466
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=89.04 E-value=0.9 Score=60.65 Aligned_cols=228 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred ceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc
Q psy12680 1312 QIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ 1391 (2567)
Q Consensus 1312 ~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~ 1391 (2567)
.++-.........-.+..+...+.++++.|++||||+.+.+. +-...+...--++.+||++.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~------------------ih~~s~~~~~~~i~~~c~~~ 201 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA------------------IHASSARSEKPLVTLNCAAL 201 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHH------------------HHHcCCCCCCCeeeeeCCCC
Q ss_pred cCHHHHHHHHHhhhhcccCCccCCCCCcEE---------EEEEcCCCCccccccCCCChHHHHHHHhhcccccccCccee
Q psy12680 1392 TSANQTQDIIMSKLDKRRKGVYGPPLGKRC---------VVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVA 1462 (2567)
Q Consensus 1392 Tts~~~q~~ies~lekr~~~~~gp~~gK~~---------vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~ 1462 (2567)
+ ...+++.+....++.|.....++. ++|+|++..=..+ ...-|-++++.+-+........
T Consensus 202 ~-----~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~------~q~~l~~~l~~~~~~~~~~~~~ 270 (441)
T PRK10365 202 N-----ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM------MQVRLLRAIQEREVQRVGSNQT 270 (441)
T ss_pred C-----HHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH------HHHHHHHHHccCcEEeCCCCce
Q ss_pred eeeeeeeeeeecCCCCCC----CCCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHHHHHHHH
Q psy12680 1463 VKLIEIQLMCAMGPPSTG----NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLH 1538 (2567)
Q Consensus 1463 ~~i~diq~v~am~Ppggg----~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~ati~ 1538 (2567)
..+ |+.+++|.+.+-.. +...++|...++.+.+.-|+-..-..-...+...++.. +......-...+....++
T Consensus 271 ~~~-~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~--~~~~~~~~~~~~~~~a~~ 347 (441)
T PRK10365 271 ISV-DVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQR--FAERNRKAVKGFTPQAMD 347 (441)
T ss_pred eee-ceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHH--HHHHhCCCCCCcCHHHHH
Q ss_pred HHHHHHhhcCCCCCCccccc--CchhHHHHHHHHhccchHHHhcHHHH
Q psy12680 1539 IFKESLLNLLPTPTKSHYLF--NLRDFARVIQGVLLSVPEAIESLLSM 1584 (2567)
Q Consensus 1539 ly~~v~~~~lPTp~k~HY~F--nlRDlsrv~qGll~~~~~~i~~~~~l 1584 (2567)
... .|.| |+|+|.++++-.........-+...+
T Consensus 348 ~L~-------------~~~wpgN~reL~~~~~~~~~~~~~~~i~~~~l 382 (441)
T PRK10365 348 LLI-------------HYDWPGNIRELENAVERAVVLLTGEYISEREL 382 (441)
T ss_pred HHH-------------hCCCCCHHHHHHHHHHHHHHhCCCCccchHhC
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.01 E-value=0.33 Score=56.91 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=23.9
Q ss_pred HHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 361 MMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 361 ~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.+..+..+.++||+||||||.++.|...+
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34456678999999999999999987754
No 468
>KOG2227|consensus
Probab=88.94 E-value=0.95 Score=58.17 Aligned_cols=144 Identities=20% Similarity=0.256 Sum_probs=77.7
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhcc--ccccceeeccccccCHHHHHHHHHhhh--hcc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSI--EQWQPLIMNFSAQTSANQTQDIIMSKL--DKR 1408 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~--~~~~~~~lnfSa~Tts~~~q~~ies~l--ekr 1408 (2567)
......++|-||||||++..- ++..+.. ..+.++.+||-+-|++..+-.-|.+.+ ++.
T Consensus 174 t~gSlYVsG~PGtgkt~~l~r------------------vl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~ 235 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTALLSR------------------VLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLV 235 (529)
T ss_pred cCcceEeeCCCCcchHHHHHH------------------HHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhc
Confidence 345668999999999976631 2222222 234568899999777776666566666 233
Q ss_pred cCCcc--------CCC-CC-cEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCC
Q psy12680 1409 RKGVY--------GPP-LG-KRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPS 1478 (2567)
Q Consensus 1409 ~~~~~--------gp~-~g-K~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppg 1478 (2567)
.++.. .+. .. +.+|+..|++ |..+++. .+-.|---.+.|.--..+.++|-.|-
T Consensus 236 s~~~~~~~~~~~~~h~~q~k~~~llVlDEm-----D~L~tr~----------~~vLy~lFewp~lp~sr~iLiGiANs-- 298 (529)
T KOG2227|consen 236 SPGTGMQHLEKFEKHTKQSKFMLLLVLDEM-----DHLITRS----------QTVLYTLFEWPKLPNSRIILIGIANS-- 298 (529)
T ss_pred CCchhHHHHHHHHHHHhcccceEEEEechh-----hHHhhcc----------cceeeeehhcccCCcceeeeeeehhh--
Confidence 22221 011 12 3567777874 4444322 11222222233333344444443331
Q ss_pred CCCCCCcchhcccc--------ceeccCCCHHHHHHHHHHHHH
Q psy12680 1479 TGNTVTPRFSRHFN--------QIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1479 gg~~is~Rf~r~f~--------vi~i~~p~~~sL~~If~~il~ 1513 (2567)
-+++.||+-.++ ++++++.+.+.|..|+..=+.
T Consensus 299 --lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 299 --LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred --hhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 123445543333 367788899999999986553
No 469
>PRK14528 adenylate kinase; Provisional
Probab=88.91 E-value=0.92 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+++|||||||||..+.|++.+
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 470
>PRK12377 putative replication protein; Provisional
Probab=88.87 E-value=0.43 Score=58.37 Aligned_cols=69 Identities=25% Similarity=0.327 Sum_probs=46.5
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHH--------HHHHhhhhhhhcCcccccccc--ccCCchhHHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYI--------GLGKFFKGLIATGAWACFDEF--NRIDVEVLSV 71 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~--------~m~rif~Gl~q~GaW~CFDEf--Nri~~~vLSv 71 (2567)
..||+|||||....++|+.+ |+.|+.++..+-++.- ...+++..+. .--.+|+||| .+.+.....+
T Consensus 106 l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~-~~dLLiIDDlg~~~~s~~~~~~ 184 (248)
T PRK12377 106 FSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC-KVDLLVLDEIGIQRETKNEQVV 184 (248)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc-CCCEEEEcCCCCCCCCHHHHHH
Confidence 46999999999999999998 6778888877644411 2234555554 3456899999 4444444333
Q ss_pred HHH
Q psy12680 72 VAQ 74 (2567)
Q Consensus 72 vaq 74 (2567)
+-+
T Consensus 185 l~~ 187 (248)
T PRK12377 185 LNQ 187 (248)
T ss_pred HHH
Confidence 333
No 471
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.85 E-value=0.21 Score=61.42 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=49.4
Q ss_pred HHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcc
Q psy12680 1329 LLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKR 1408 (2567)
Q Consensus 1329 ~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr 1408 (2567)
.++.++.+++|.||+|||||-+..+. ..++....+.+.. .|.++-++++-.+.-+.+
T Consensus 100 ~~~~~~~nl~l~G~~G~GKThLa~Ai------------------~~~l~~~g~sv~f-----~~~~el~~~Lk~~~~~~~ 156 (254)
T COG1484 100 EFFERGENLVLLGPPGVGKTHLAIAI------------------GNELLKAGISVLF-----ITAPDLLSKLKAAFDEGR 156 (254)
T ss_pred HHhccCCcEEEECCCCCcHHHHHHHH------------------HHHHHHcCCeEEE-----EEHHHHHHHHHHHHhcCc
Confidence 35668999999999999999766431 1222211222222 244555555544333211
Q ss_pred cCCccCCCCCcEEEEEEcCCCCccccccCCCC
Q psy12680 1409 RKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQP 1440 (2567)
Q Consensus 1409 ~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~ 1440 (2567)
....+-....+-=++++||+..+..+.|++--
T Consensus 157 ~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~ 188 (254)
T COG1484 157 LEEKLLRELKKVDLLIIDDIGYEPFSQEEADL 188 (254)
T ss_pred hHHHHHHHhhcCCEEEEecccCccCCHHHHHH
Confidence 11101111233347889999998888776533
No 472
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.85 E-value=0.24 Score=56.62 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
++++||+||||||+.+.|+..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999886
No 473
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.82 E-value=0.038 Score=64.16 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=18.6
Q ss_pred HHHHhcCCCcccccCCCCcccceeeh
Q psy12680 1328 KLLVTHQKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1328 ~~ll~~~~pvll~GptGTGKT~~i~~ 1353 (2567)
..|+..+.++++.||+|||||-+..+
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHH
Confidence 45678899999999999999977643
No 474
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=88.80 E-value=0.31 Score=54.81 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.8
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+|++||||||+-+.|++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 475
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=88.77 E-value=2.3 Score=53.00 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcc----cCCccEEEEEeccCCCCcCcccccccCCCC
Q psy12680 352 LEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGE----LGEHKVEIIVINPKSITMGQLYGQFDAVSH 427 (2567)
Q Consensus 352 i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~----~~~~~v~~~~inPKait~~eLyG~~d~~T~ 427 (2567)
-.+..+.++.-.+.|+.+++||.|+||+++...+++++---..... ..+.+-.++.+.|..-+ ...| .|.
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~--~~I~-idq--- 79 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG--RLHS-IET--- 79 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--CcCc-HHH---
Confidence 3456667777788999999999999999999999998731000000 01122345556662110 0000 110
Q ss_pred CCCcchHHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcce
Q psy12680 428 EWSDGILAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPAT 506 (2567)
Q Consensus 428 EW~DGvls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPAT 506 (2567)
.-.+.++....+ ....|.+|+|. +|..=.+.-|++| |+|-=| |+++.||+-+++....-|.-
T Consensus 80 ------iR~l~~~~~~~p~e~~~kv~ii~~-ad~mt~~AaNaLL---K~LEEP-------p~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 80 ------PRAIKKQIWIHPYESPYKIYIIHE-ADRMTLDAISAFL---KVLEDP-------PQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred ------HHHHHHHHhhCccCCCceEEEEec-hhhcCHHHHHHHH---HHhhcC-------CCCeEEEEEeCChhhCcHHH
Confidence 111222222222 34567888875 6777778888888 333222 66889999999999998877
Q ss_pred eeeceeEEecC
Q psy12680 507 VSRCGMIYMEP 517 (2567)
Q Consensus 507 VSRcGmVy~~~ 517 (2567)
.|||=.|.|.+
T Consensus 143 ~SRcq~~~~~~ 153 (290)
T PRK05917 143 RSRSLSIHIPM 153 (290)
T ss_pred HhcceEEEccc
Confidence 99999999976
No 476
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.73 E-value=1.7 Score=57.92 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=59.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC-cCcc--ccccc--CCCCCCCcchHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT-MGQL--YGQFD--AVSHEWSDGILAVSYR 439 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait-~~eL--yG~~d--~~T~EW~DGvls~i~R 439 (2567)
..-++|+||+|+||||+...|+..+..- .++.+|.+...++--+. ..+| ||..- +......++-+..+++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~-----~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ-----HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH
Confidence 4678899999999999999998865421 11235555555554332 2222 12111 0111234455556665
Q ss_pred HHHhcCCCCceEEEeCCC----CCHHHHHHHHh---hhcCCceeEecc
Q psy12680 440 QFAMSQNENRKWLIFDGP----VDAIWIENMNS---VLDDNKKLCLMS 480 (2567)
Q Consensus 440 ~~~~~~~~~~~WivfDGp----VDa~WIEnLNS---VLDDNK~LtL~n 480 (2567)
+. .+..+|+.|.+ -|...++.|.. .......|.++.
T Consensus 425 ~l-----~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpA 467 (559)
T PRK12727 425 RL-----RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPA 467 (559)
T ss_pred Hh-----ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEEC
Confidence 53 24579999977 46666665543 234444455443
No 477
>PRK08939 primosomal protein DnaI; Reviewed
Probab=88.67 E-value=0.38 Score=60.75 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.9
Q ss_pred cCCCcccccCCCCcccceeeh
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~ 1353 (2567)
.+++++|.||+|||||-++.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467899999999999987754
No 478
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.65 E-value=0.31 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=19.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
+.-.-++||+||||||.+++|-+-
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHHhh
Confidence 445689999999999999886553
No 479
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.65 E-value=1 Score=50.62 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=29.7
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCcc
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMD 38 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d 38 (2567)
..||+|+|||..++.++..+ |..|+.+.+.+..+
T Consensus 4 i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 4 VFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 47999999999999998888 67899999987765
No 480
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.60 E-value=0.5 Score=57.58 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=21.8
Q ss_pred HHHhceEEE-EEccCCCChhHHHHHHHHHHH
Q psy12680 361 MMIVRWGFM-IVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 361 ~~~~rhGvm-lvGp~gsGKSt~~~~L~~Al~ 390 (2567)
......|.+ +.|||||||||.+-.+.+.++
T Consensus 120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 120 LAESPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred HHhCCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 334455654 569999999998877777665
No 481
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.54 E-value=0.2 Score=59.73 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=23.5
Q ss_pred HHHHHhceEEEEEccCCCChhHHHHHHHHH
Q psy12680 359 YEMMIVRWGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 359 ye~~~~rhGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
++--....-++|+||+||||||+++.|.+.
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 333445667899999999999999998653
No 482
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.52 E-value=0.67 Score=54.25 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcC--cccccccCCCCCCCcchHHHHHHHHHhcC
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMG--QLYGQFDAVSHEWSDGILAVSYRQFAMSQ 445 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~--eLyG~~d~~T~EW~DGvls~i~R~~~~~~ 445 (2567)
|.|.|+|||||||+-+.|++.+ .........-+...+..+... .+|.+=.|.+.+| ..|-..++......
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~------~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~--~~l~~~L~~l~~~~ 73 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL------PNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDM--EAMMSTLDYWRETG 73 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc------CCCeEEccccccCCcccCChHhhcCCCCCCcccccH--HHHHHHHHHHHcCC
Q ss_pred ----------------------------------CCCceEEEeCCCCCHHHHHHHHhhhc
Q psy12680 446 ----------------------------------NENRKWLIFDGPVDAIWIENMNSVLD 471 (2567)
Q Consensus 446 ----------------------------------~~~~~WivfDGpVDa~WIEnLNSVLD 471 (2567)
......||+||.. ...-+.+...+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~-l~~~~~l~~l~D 132 (187)
T cd02024 74 HFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFL-LYNYKPLVDLFD 132 (187)
T ss_pred CccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechH-hcCCHHHHhhcC
No 483
>PHA02774 E1; Provisional
Probab=88.42 E-value=3 Score=55.91 Aligned_cols=125 Identities=20% Similarity=0.293 Sum_probs=75.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhc
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMS 444 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~ 444 (2567)
|.++.++||||+|||...-.|.+.|. .++ +.-+|- .++-| | ..
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~----------G~v-i~fvN~--------------~s~Fw----L----qp---- 476 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLK----------GKV-ISFVNS--------------KSHFW----L----QP---- 476 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC----------CCE-EEEEEC--------------ccccc----c----ch----
Confidence 57999999999999999888888762 122 112332 24556 1 11
Q ss_pred CCCCceEEEeCCCCCH--HHHH-HHHhhhcCCceeEe---------cccceeecCCCCeEEEecCCcCcCCcceeeecee
Q psy12680 445 QNENRKWLIFDGPVDA--IWIE-NMNSVLDDNKKLCL---------MSGEIIALAPTTSLIFEPQDLEVASPATVSRCGM 512 (2567)
Q Consensus 445 ~~~~~~WivfDGpVDa--~WIE-nLNSVLDDNK~LtL---------~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGm 512 (2567)
-.+.+.+|+|-.-.+ .|+. +|..+||-|. +|+ ...-.+-++.|+.+.-| ..=..--||.-.
T Consensus 477 -l~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~-v~lD~Khk~~~q~k~pPlIITSN~d~~~~-----~~~~yL~sRi~~ 549 (613)
T PHA02774 477 -LADAKIALLDDATHPCWDYIDTYLRNALDGNP-VSIDCKHKAPVQIKCPPLLITSNIDVKAE-----DRYKYLHSRITV 549 (613)
T ss_pred -hccCCEEEEecCcchHHHHHHHHHHHHcCCCc-ceeeecccCcccccCCCEEEecCCCcccc-----hhhHHhhhhEEE
Confidence 124578999977777 5666 8999999882 111 11122223333343333 223455678776
Q ss_pred EEecC--------------CCCchhhhHHhhhhcC
Q psy12680 513 IYMEP--------------ATLGWECLVDSWLNTL 533 (2567)
Q Consensus 513 Vy~~~--------------~~lgw~~~v~sWl~~~ 533 (2567)
.+|.. .+-.|++|+..+=.++
T Consensus 550 f~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~L 584 (613)
T PHA02774 550 FEFPNPFPLDENGNPVFELTDANWKSFFERLWSQL 584 (613)
T ss_pred EECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHc
Confidence 66532 2357999998766554
No 484
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=88.32 E-value=1.1 Score=48.58 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=47.2
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCcc--ccccccccCCchhHHHHHHHHHhhhhhh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAW--ACFDEFNRIDVEVLSVVAQQILTIQRGV 83 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW--~CFDEfNri~~~vLSvvaqqi~~Iq~a~ 83 (2567)
.|++|||||+.++.|++.+ .+...--++......+.. ...+++.+++.+....+.+.+..... .
T Consensus 4 ~G~~GsGKtTia~~L~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (129)
T PF13238_consen 4 SGIPGSGKTTIAKELAERL-------------GDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR-R 69 (129)
T ss_dssp EESTTSSHHHHHHHHHHHH-------------CHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH-H
T ss_pred ECCCCCCHHHHHHHHHHHH-------------CcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc-c
Confidence 6999999999999999999 222222222222222221 34577788998888887777765433 1
Q ss_pred hcCCceEEEcCe
Q psy12680 84 TLGEEEILFEGT 95 (2567)
Q Consensus 84 ~~~~~~~~f~g~ 95 (2567)
......+.++|.
T Consensus 70 ~~~~~~~iid~~ 81 (129)
T PF13238_consen 70 MNKGRNIIIDGI 81 (129)
T ss_dssp HTTTSCEEEEES
T ss_pred cccCCcEEEecc
Confidence 234455666654
No 485
>PRK10869 recombination and repair protein; Provisional
Probab=88.31 E-value=60 Score=44.83 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=16.7
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q psy12680 1808 FMIVGLSFAGKTCAYRMLSE 1827 (2567)
Q Consensus 1808 ~lLVG~~GSGK~sl~rlla~ 1827 (2567)
..++|++|+|||.+.--+..
T Consensus 25 nvitGetGaGKS~ildAi~~ 44 (553)
T PRK10869 25 TVITGETGAGKSIAIDALGL 44 (553)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 58999999999988876553
No 486
>PRK10536 hypothetical protein; Provisional
Probab=88.29 E-value=0.81 Score=55.70 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=33.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEE-EEEeccCCCCcCcccccc
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVE-IIVINPKSITMGQLYGQF 422 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~-~~~inPKait~~eLyG~~ 422 (2567)
..=|+++||+|||||++...+.... +.+ ..+. +++.+| .++.+|.+|++
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~~--l~~------~~~~kIiI~RP-~v~~ge~LGfL 123 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAEA--LIH------KDVDRIIVTRP-VLQADEDLGFL 123 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--Hhc------CCeeEEEEeCC-CCCchhhhCcC
Confidence 5678899999999999987776632 111 1233 444555 46889999976
No 487
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=88.27 E-value=0.93 Score=53.16 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.5
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+|||||||||+.+.|++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999875
No 488
>PF13245 AAA_19: Part of AAA domain
Probab=88.22 E-value=0.5 Score=46.98 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=16.8
Q ss_pred eE-EEEEccCCCChh-HHHHHHHHHH
Q psy12680 366 WG-FMIVGLSFAGKT-CAYRMLSEAL 389 (2567)
Q Consensus 366 hG-vmlvGp~gsGKS-t~~~~L~~Al 389 (2567)
++ ++|.|||||||| ++.+.+...+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44 445999999999 5555555554
No 489
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=88.19 E-value=1.2 Score=60.48 Aligned_cols=123 Identities=19% Similarity=0.234 Sum_probs=72.7
Q ss_pred CCCCCCCCchhHHHHHHHH---hcCeEEEEeCCCCccHHHHHHhhhh------------------hhhcCcccccccccc
Q psy12680 5 PEGPAGTGKTETTKDLAKA---VAKLCIVFNCSDSMDYIGLGKFFKG------------------LIATGAWACFDEFNR 63 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~---lG~~~~vfNCs~~~d~~~m~rif~G------------------l~q~GaW~CFDEfNr 63 (2567)
..|++|||||...+.+-.. -+.+++++||..--+ ..+..-+.| .| .|.-..+||+..
T Consensus 215 I~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a-~gGtL~ldeI~~ 292 (509)
T PRK05022 215 ILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-SLAESELFGHVKGAFTGAISNRSGKFELA-DGGTLFLDEIGE 292 (509)
T ss_pred EECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-HHHHHHhcCccccccCCCcccCCcchhhc-CCCEEEecChhh
Confidence 3699999999999999877 457999999997544 223322222 22 244589999999
Q ss_pred CCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCC---CCCCCchhhHhhccccccccCCCHH
Q psy12680 64 IDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGY---AGRSELPDNLKSLFRTVAMMVPDYA 138 (2567)
Q Consensus 64 i~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgY---aGRseLPdnLk~lFRpvam~~PD~~ 138 (2567)
|+.++..-+..-++. . .|.-.|..-....++-|.+|.|..- .....+.+.|=-.+-.+.+.+|-..
T Consensus 293 L~~~~Q~~Ll~~l~~---~------~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLr 361 (509)
T PRK05022 293 LPLALQAKLLRVLQY---G------EIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLR 361 (509)
T ss_pred CCHHHHHHHHHHHhc---C------CEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCch
Confidence 997777666554432 1 2222232223445677788777532 1111233333333335666677543
No 490
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=88.19 E-value=0.22 Score=55.29 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=51.3
Q ss_pred CCCCCCCchhHHHHHHHHhcC---eEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAK---LCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILT 78 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~---~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~ 78 (2567)
.|++||||+..++.|...-++ +.++.+|.+ ++. +++... .|.+.+++|+.+|+.+....+++.+..
T Consensus 27 ~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~-~~~----~~l~~a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 27 TGEPGTGKSLLARALHRYSGRANGPFIVIDCAS-LPA----ELLEQA--KGGTLYLKNIDRLSPEAQRRLLDLLKR 95 (138)
T ss_dssp ECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC-TCH----HHHHHC--TTSEEEEECGCCS-HHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHhhcCccCCCeEEechhh-CcH----HHHHHc--CCCEEEECChHHCCHHHHHHHHHHHHh
Confidence 699999999999999988876 556667776 443 333332 788889999999999999999988875
No 491
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=88.18 E-value=0.32 Score=61.20 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+||||||||++-..|++.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRL 28 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhC
Confidence 468999999999999999998876
No 492
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.15 E-value=0.77 Score=57.28 Aligned_cols=57 Identities=21% Similarity=0.397 Sum_probs=36.9
Q ss_pred CCCChHH---HHHHHHHHHHHcCCccChHHHHHHHHHHHHHHhc--eEEEEEccCCCChhHHHHHHHH
Q psy12680 325 PETDYTI---LNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVR--WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 325 ~~~~~~~---l~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~r--hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
|+..|.. |...|++.=+.--|....+ .||+.+-+. .||+|.||||+|||-+.|..+.
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~P------ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~ 207 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNP------ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN 207 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCH------HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4555544 5566555444333332221 578887766 7999999999999977666554
No 493
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.15 E-value=0.22 Score=63.53 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCCeEEecCCCCCccceeehhhhhh
Q psy12680 769 RNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFI 805 (2567)
Q Consensus 769 r~~~ll~ll~~~~~pvll~G~~GtGKT~~i~~~~~~~ 805 (2567)
....++..++.++.+++++|++||||||+++.++...
T Consensus 150 ~~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 150 DLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc
Confidence 3456889999999999999999999999998766543
No 494
>PRK13973 thymidylate kinase; Provisional
Probab=88.08 E-value=1.3 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
|.+-|+.||||||..+.|++.|+
T Consensus 6 IviEG~dGsGKtTq~~~l~~~l~ 28 (213)
T PRK13973 6 ITFEGGEGAGKSTQIRLLAERLR 28 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67789999999999999999985
No 495
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.03 E-value=74 Score=38.97 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=15.5
Q ss_pred HHHHhhhhhhhccHHHHHHHHHHHhhcc
Q psy12680 2405 EDLIGKLGGEKERWSSTAKMLNEKYYQL 2432 (2567)
Q Consensus 2405 ~~Li~~L~~Ek~RW~~~~~~l~~~~~~l 2432 (2567)
++-|..|.++-..|+.....++..+...
T Consensus 203 e~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 203 EKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666665443
No 496
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=87.96 E-value=0.35 Score=54.52 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=51.8
Q ss_pred EEccCCCChhHHHHHHHHHHHH--------HHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCC-CcchHHHHHHH
Q psy12680 370 IVGLSFAGKTCAYRMLSEALQL--------IEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEW-SDGILAVSYRQ 440 (2567)
Q Consensus 370 lvGp~gsGKSt~~~~L~~Al~~--------l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW-~DGvls~i~R~ 440 (2567)
|+|||||||||+.+.|++.+.. +++. +..++-.-.++-..++ .++. .|.++..++++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~------------~~~~s~~g~~i~~~l~--~g~~vp~~~v~~ll~~ 66 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREE------------IKSDSELGKQIQEYLD--NGELVPDELVIELLKE 66 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHH------------HHTTSHHHHHHHHHHH--TTSS--HHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHH------------HhhhhHHHHHHHHHHH--hhccchHHHHHHHHHH
Confidence 6899999999999999998631 1110 0001100111222232 3444 46777888877
Q ss_pred HHhcCCCCceEEEeCCCCCHHHHHHHHhhhc
Q psy12680 441 FAMSQNENRKWLIFDGPVDAIWIENMNSVLD 471 (2567)
Q Consensus 441 ~~~~~~~~~~WivfDGpVDa~WIEnLNSVLD 471 (2567)
........+-||+=.=|-....++.+..+|.
T Consensus 67 ~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~ 97 (151)
T PF00406_consen 67 RLEQPPCNRGFILDGFPRTLEQAEALEEILE 97 (151)
T ss_dssp HHHSGGTTTEEEEESB-SSHHHHHHHHHHHH
T ss_pred HHhhhcccceeeeeeccccHHHHHHHHHHHh
Confidence 6555444556654444889999999887774
No 497
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=87.95 E-value=0.35 Score=65.02 Aligned_cols=31 Identities=39% Similarity=0.399 Sum_probs=27.8
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCC
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDS 36 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~ 36 (2567)
.||||+|||.|||-||+.||..+.-.++.-.
T Consensus 51 tGP~G~GKtttv~~La~elg~~v~Ew~np~~ 81 (519)
T PF03215_consen 51 TGPSGCGKTTTVKVLAKELGFEVQEWINPVS 81 (519)
T ss_pred ECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 7999999999999999999999998865544
No 498
>PLN02674 adenylate kinase
Probab=87.90 E-value=1.4 Score=53.64 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=54.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcC
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQ 445 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~ 445 (2567)
.-|+|+|||||||||.-+.|++.+....- +.|. -++ ..+..++-.-.++-..++ ...-=-|.+...++++.....
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~Gd-llR-~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~ 106 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGD-MLR-AAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKP 106 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhH-HHH-HHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhCc
Confidence 45999999999999999999887531100 0000 000 001111101111111122 122234667777777765544
Q ss_pred CCCceEEEeCC-CCCHHHHHHHHhhhcC
Q psy12680 446 NENRKWLIFDG-PVDAIWIENMNSVLDD 472 (2567)
Q Consensus 446 ~~~~~WivfDG-pVDa~WIEnLNSVLDD 472 (2567)
... +=+|+|| |=...-++.|...|.+
T Consensus 107 ~~~-~g~ilDGfPRt~~Qa~~l~~~l~~ 133 (244)
T PLN02674 107 SCQ-KGFILDGFPRTVVQAQKLDEMLAK 133 (244)
T ss_pred CcC-CcEEEeCCCCCHHHHHHHHHHHHh
Confidence 333 3357788 7788888888877654
No 499
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.88 E-value=0.36 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+|+|+|||||||+-+.|++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999987
No 500
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=87.85 E-value=0.7 Score=65.26 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=22.2
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEE
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCI 29 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~ 29 (2567)
+.-||+|||||...|.||+.||-.++
T Consensus 5 ~I~G~~GsGKST~ak~la~~l~~~~~ 30 (712)
T PRK09518 5 AIDGPAGVGKSSVSRALAQYLGYAYL 30 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 34699999999999999999985544
Done!