Query psy12680
Match_columns 2567
No_of_seqs 346 out of 2196
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 16:52:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 6E-292 2E-296 3157.4 121.4 1496 1-2566 605-2237(3245)
2 4akg_A Glutathione S-transfera 100.0 2E-242 5E-247 2640.8 106.1 1341 1-2566 646-2057(2695)
3 3vkg_A Dynein heavy chain, cyt 100.0 1.9E-64 6.4E-69 745.7 27.4 606 1158-1953 410-1051(3245)
4 4akg_A Glutathione S-transfera 100.0 2.3E-57 7.9E-62 671.8 21.4 577 1165-1953 474-1069(2695)
5 2rr7_A Dynein heavy chain 9; m 100.0 6.7E-38 2.3E-42 346.5 3.8 153 2194-2347 1-154 (155)
6 3err_A Fusion protein of micro 100.0 1.2E-33 3.9E-38 367.6 18.9 173 2181-2365 37-209 (536)
7 1r6b_X CLPA protein; AAA+, N-t 99.4 1.1E-12 3.7E-17 182.8 12.8 141 1336-1514 490-668 (758)
8 3pxi_A Negative regulator of g 99.2 7.9E-11 2.7E-15 163.9 13.9 144 1336-1514 523-677 (758)
9 1qvr_A CLPB protein; coiled co 99.1 1.5E-10 5.3E-15 162.7 12.9 82 931-1026 263-347 (854)
10 1r6b_X CLPA protein; AAA+, N-t 98.8 6E-07 2.1E-11 125.2 28.2 122 5-145 212-359 (758)
11 2r44_A Uncharacterized protein 98.7 3.4E-08 1.1E-12 123.9 11.8 131 5-145 51-195 (331)
12 1qvr_A CLPB protein; coiled co 98.7 8.7E-08 3E-12 134.9 16.7 151 1334-1515 191-348 (854)
13 3pxi_A Negative regulator of g 98.6 8E-07 2.7E-11 123.8 20.5 146 345-517 493-661 (758)
14 2bjv_A PSP operon transcriptio 98.4 7.9E-07 2.7E-11 107.8 10.8 202 1322-1571 17-237 (265)
15 2r44_A Uncharacterized protein 97.9 4.8E-06 1.7E-10 104.3 5.8 151 1330-1512 42-198 (331)
16 4fcw_A Chaperone protein CLPB; 97.9 7.7E-06 2.6E-10 101.3 7.4 155 1335-1514 48-231 (311)
17 3cf2_A TER ATPase, transitiona 97.9 5.8E-05 2E-09 103.3 15.9 135 1335-1512 239-385 (806)
18 1ojl_A Transcriptional regulat 97.9 3.5E-05 1.2E-09 95.3 11.5 161 1323-1513 14-191 (304)
19 2chg_A Replication factor C sm 97.8 4.3E-05 1.5E-09 88.8 10.2 143 1327-1513 29-175 (226)
20 1ofh_A ATP-dependent HSL prote 97.8 5.8E-05 2E-09 93.2 11.9 137 6-145 56-212 (310)
21 3cf2_A TER ATPase, transitiona 97.8 3.9E-05 1.3E-09 105.0 10.3 122 5-144 243-381 (806)
22 1jbk_A CLPB protein; beta barr 97.8 1.9E-06 6.7E-11 97.8 -2.3 143 1334-1507 43-193 (195)
23 3m6a_A ATP-dependent protease 97.7 2.5E-05 8.5E-10 104.2 7.1 199 1333-1572 107-313 (543)
24 1ypw_A Transitional endoplasmi 97.7 0.00015 5E-09 101.1 14.5 122 5-144 243-381 (806)
25 2v1u_A Cell division control p 97.7 7.6E-05 2.6E-09 95.0 10.4 155 1333-1516 43-218 (387)
26 2chg_A Replication factor C sm 97.7 0.00012 4E-09 85.1 10.9 116 6-145 44-171 (226)
27 1ofh_A ATP-dependent HSL prote 97.6 6.7E-05 2.3E-09 92.6 8.9 148 1333-1509 49-212 (310)
28 3f9v_A Minichromosome maintena 97.6 2E-05 7E-10 105.9 4.5 113 6-127 333-468 (595)
29 3te6_A Regulatory protein SIR3 97.6 0.00013 4.5E-09 90.0 10.3 165 1322-1515 31-214 (318)
30 3u61_B DNA polymerase accessor 97.6 0.00012 4.1E-09 91.3 10.1 139 1326-1513 37-179 (324)
31 4fcw_A Chaperone protein CLPB; 97.6 0.00023 7.9E-09 87.9 12.4 129 6-144 53-225 (311)
32 3pfi_A Holliday junction ATP-d 97.6 0.00011 3.7E-09 92.2 9.4 127 6-144 61-193 (338)
33 2qby_B CDC6 homolog 3, cell di 97.6 6.7E-05 2.3E-09 95.6 7.6 154 1325-1514 34-212 (384)
34 1xwi_A SKD1 protein; VPS4B, AA 97.6 5.8E-05 2E-09 94.1 6.6 140 1334-1513 45-193 (322)
35 2zan_A Vacuolar protein sortin 97.5 4E-05 1.4E-09 99.9 4.7 86 1419-1513 227-315 (444)
36 1hqc_A RUVB; extended AAA-ATPa 97.5 0.00027 9.3E-09 87.8 11.5 129 5-144 43-177 (324)
37 3f9v_A Minichromosome maintena 97.5 2.8E-05 9.5E-10 104.7 2.6 88 1421-1515 393-493 (595)
38 3h4m_A Proteasome-activating n 97.5 0.00017 5.7E-09 88.2 9.3 120 6-144 57-197 (285)
39 3u61_B DNA polymerase accessor 97.5 0.0002 6.9E-09 89.2 10.2 113 6-143 54-173 (324)
40 3syl_A Protein CBBX; photosynt 97.5 4.8E-05 1.6E-09 94.1 4.5 82 1421-1514 132-219 (309)
41 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00024 8.2E-09 85.4 10.3 121 5-144 44-186 (262)
42 1sxj_A Activator 1 95 kDa subu 97.5 0.0002 6.7E-09 95.2 10.3 140 1334-1513 77-223 (516)
43 3pfi_A Holliday junction ATP-d 97.5 0.00016 5.4E-09 90.7 8.9 136 1335-1513 56-198 (338)
44 2bjv_A PSP operon transcriptio 97.5 9.7E-05 3.3E-09 89.4 6.7 125 6-139 35-181 (265)
45 3cf0_A Transitional endoplasmi 97.5 0.0001 3.4E-09 91.1 7.0 141 1332-1513 47-200 (301)
46 3pxg_A Negative regulator of g 97.5 1.8E-05 6.2E-10 103.8 0.0 137 1333-1515 200-341 (468)
47 2p65_A Hypothetical protein PF 97.5 1E-05 3.5E-10 91.6 -2.0 69 1418-1500 114-187 (187)
48 1hqc_A RUVB; extended AAA-ATPa 97.4 0.00043 1.5E-08 86.1 12.5 139 1333-1513 37-182 (324)
49 1g8p_A Magnesium-chelatase 38 97.4 0.00012 3.9E-09 92.2 7.2 130 5-144 50-228 (350)
50 3nbx_X ATPase RAVA; AAA+ ATPas 97.4 9.6E-05 3.3E-09 96.9 6.6 153 1327-1509 34-193 (500)
51 3vfd_A Spastin; ATPase, microt 97.4 0.00035 1.2E-08 89.5 11.5 123 6-145 154-292 (389)
52 2qp9_X Vacuolar protein sortin 97.4 0.00016 5.3E-09 91.5 8.0 86 1419-1513 143-231 (355)
53 3nbx_X ATPase RAVA; AAA+ ATPas 97.4 0.00028 9.5E-09 92.6 10.1 120 6-137 47-184 (500)
54 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.00054 1.9E-08 85.4 12.2 122 6-144 51-188 (322)
55 1l8q_A Chromosomal replication 97.4 9.3E-05 3.2E-09 92.3 5.1 141 1334-1513 37-180 (324)
56 1fnn_A CDC6P, cell division co 97.3 0.00028 9.4E-09 90.0 8.9 147 1336-1515 46-209 (389)
57 1jbk_A CLPB protein; beta barr 97.3 6.9E-05 2.4E-09 84.9 2.4 117 5-143 48-193 (195)
58 3h4m_A Proteasome-activating n 97.3 0.00015 5.2E-09 88.5 5.5 144 1332-1513 49-202 (285)
59 3d8b_A Fidgetin-like protein 1 97.3 0.00041 1.4E-08 87.8 9.5 124 5-145 122-261 (357)
60 4b4t_J 26S protease regulatory 97.3 0.00049 1.7E-08 87.0 9.9 138 1333-1513 181-333 (405)
61 3eie_A Vacuolar protein sortin 97.3 0.00022 7.4E-09 89.0 6.7 139 1334-1513 51-198 (322)
62 3hws_A ATP-dependent CLP prote 97.3 5.3E-05 1.8E-09 96.1 1.0 152 1334-1510 51-267 (363)
63 3bos_A Putative DNA replicatio 97.3 0.0002 6.8E-09 84.6 5.8 140 1327-1513 43-188 (242)
64 2qp9_X Vacuolar protein sortin 97.2 0.00052 1.8E-08 86.7 9.7 123 5-144 89-226 (355)
65 2p65_A Hypothetical protein PF 97.2 9.7E-05 3.3E-09 83.5 2.6 110 5-136 48-187 (187)
66 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0009 3.1E-08 80.4 10.2 140 1333-1514 38-192 (262)
67 1sxj_D Activator 1 41 kDa subu 97.1 0.0005 1.7E-08 86.4 8.1 151 1327-1513 49-206 (353)
68 1sxj_D Activator 1 41 kDa subu 97.1 0.00079 2.7E-08 84.6 9.8 116 6-145 64-202 (353)
69 3t15_A Ribulose bisphosphate c 97.1 0.00042 1.4E-08 85.2 7.0 127 6-144 42-194 (293)
70 3eie_A Vacuolar protein sortin 97.1 0.00079 2.7E-08 83.9 9.4 122 6-144 57-193 (322)
71 1iqp_A RFCS; clamp loader, ext 97.1 0.00035 1.2E-08 86.7 6.1 142 1327-1513 37-183 (327)
72 1um8_A ATP-dependent CLP prote 97.1 0.00069 2.4E-08 86.3 8.9 62 6-67 78-152 (376)
73 1sxj_B Activator 1 37 kDa subu 97.1 0.00063 2.2E-08 84.2 8.3 144 1327-1513 33-180 (323)
74 3t15_A Ribulose bisphosphate c 97.1 0.00036 1.2E-08 85.8 5.9 91 1418-1512 98-198 (293)
75 2zan_A Vacuolar protein sortin 97.1 0.00088 3E-08 87.2 9.9 122 6-144 173-310 (444)
76 4b4t_L 26S protease subunit RP 97.1 0.0012 4E-08 84.9 10.6 139 1334-1514 215-367 (437)
77 1sxj_B Activator 1 37 kDa subu 97.1 0.00084 2.9E-08 83.1 9.1 116 6-145 48-176 (323)
78 1sxj_A Activator 1 95 kDa subu 97.1 0.0014 4.7E-08 87.1 11.7 118 6-145 83-219 (516)
79 3pvs_A Replication-associated 97.0 0.00089 3E-08 87.0 8.9 138 1327-1514 41-180 (447)
80 3co5_A Putative two-component 97.0 0.00017 5.7E-09 78.9 1.7 108 6-136 33-141 (143)
81 4b4t_K 26S protease regulatory 97.0 0.00076 2.6E-08 86.4 7.7 135 1334-1514 206-359 (428)
82 4b4t_H 26S protease regulatory 97.0 0.0013 4.3E-08 84.3 9.5 136 1333-1514 242-395 (467)
83 2v1u_A Cell division control p 97.0 0.0017 6E-08 82.3 11.0 123 6-145 50-211 (387)
84 3syl_A Protein CBBX; photosynt 97.0 0.00032 1.1E-08 86.6 3.9 119 5-145 72-214 (309)
85 3co5_A Putative two-component 97.0 0.00023 8E-09 77.7 2.2 124 1322-1500 15-141 (143)
86 1njg_A DNA polymerase III subu 97.0 0.0013 4.4E-08 77.2 8.8 159 1327-1513 35-199 (250)
87 1lv7_A FTSH; alpha/beta domain 96.9 0.0018 6.3E-08 77.7 10.2 120 5-143 50-190 (257)
88 2qby_A CDC6 homolog 1, cell di 96.9 0.00087 3E-08 85.0 7.8 150 1334-1514 45-212 (386)
89 3bos_A Putative DNA replicatio 96.9 0.0016 5.6E-08 76.6 9.5 120 5-145 57-184 (242)
90 2chq_A Replication factor C sm 96.9 0.00041 1.4E-08 85.8 4.1 116 6-145 44-171 (319)
91 1njg_A DNA polymerase III subu 96.9 0.0021 7.2E-08 75.3 10.1 116 5-144 50-194 (250)
92 3n70_A Transport activator; si 96.9 0.00032 1.1E-08 76.8 2.5 68 6-76 30-100 (145)
93 1d2n_A N-ethylmaleimide-sensit 96.9 0.00068 2.3E-08 82.3 5.7 59 6-64 70-136 (272)
94 2r62_A Cell division protease 96.9 0.00055 1.9E-08 82.8 4.8 44 1467-1513 151-197 (268)
95 4b4t_I 26S protease regulatory 96.9 0.0012 4E-08 83.8 7.7 84 1420-1513 276-367 (437)
96 1iqp_A RFCS; clamp loader, ext 96.9 0.0015 5.2E-08 81.0 8.7 115 6-144 52-178 (327)
97 4b4t_M 26S protease regulatory 96.9 0.0011 3.9E-08 84.9 7.7 139 1334-1515 215-368 (434)
98 1g8p_A Magnesium-chelatase 38 96.8 0.001 3.5E-08 83.6 6.9 141 364-517 44-217 (350)
99 3d8b_A Fidgetin-like protein 1 96.8 0.00064 2.2E-08 86.0 5.0 142 1333-1514 116-266 (357)
100 3vfd_A Spastin; ATPase, microt 96.8 0.001 3.6E-08 85.1 6.9 140 1334-1513 148-296 (389)
101 3b9p_A CG5977-PA, isoform A; A 96.8 0.0034 1.2E-07 77.0 10.8 123 6-144 60-198 (297)
102 2chq_A Replication factor C sm 96.7 0.00056 1.9E-08 84.6 3.6 141 1328-1513 30-175 (319)
103 3m6a_A ATP-dependent protease 96.7 0.00092 3.1E-08 89.2 5.7 133 5-144 113-262 (543)
104 1um8_A ATP-dependent CLP prote 96.7 0.0026 9E-08 80.9 9.7 153 1333-1509 71-283 (376)
105 2z4s_A Chromosomal replication 96.7 0.00069 2.4E-08 88.1 4.3 44 1470-1513 231-277 (440)
106 2r62_A Cell division protease 96.7 0.00042 1.4E-08 83.8 2.1 132 3-144 47-192 (268)
107 1lv7_A FTSH; alpha/beta domain 96.7 0.0022 7.4E-08 77.1 7.9 136 1334-1512 45-195 (257)
108 4b4t_L 26S protease subunit RP 96.7 0.0028 9.6E-08 81.4 9.3 117 5-144 220-361 (437)
109 3uk6_A RUVB-like 2; hexameric 96.7 0.0018 6.1E-08 82.0 7.5 119 6-145 76-269 (368)
110 3hu3_A Transitional endoplasmi 96.7 0.002 7E-08 84.5 8.1 136 1332-1513 236-386 (489)
111 3b9p_A CG5977-PA, isoform A; A 96.6 0.0021 7.1E-08 78.9 7.4 139 1333-1513 53-203 (297)
112 3pvs_A Replication-associated 96.6 0.0028 9.5E-08 82.4 8.7 114 6-145 56-175 (447)
113 1ojl_A Transcriptional regulat 96.5 0.0015 5.3E-08 80.6 4.8 124 6-138 31-176 (304)
114 3f8t_A Predicted ATPase involv 96.5 0.0023 7.7E-08 81.7 6.2 110 5-129 244-373 (506)
115 3hu3_A Transitional endoplasmi 96.4 0.0019 6.6E-08 84.7 5.7 120 6-144 244-381 (489)
116 1sxj_C Activator 1 40 kDa subu 96.4 0.005 1.7E-07 77.2 9.3 144 1326-1513 36-183 (340)
117 3cf0_A Transitional endoplasmi 96.4 0.0027 9.2E-08 78.3 6.5 121 5-144 54-195 (301)
118 3n70_A Transport activator; si 96.4 0.00055 1.9E-08 75.0 0.2 126 1323-1499 13-142 (145)
119 1l8q_A Chromosomal replication 96.4 0.0042 1.4E-07 77.3 7.9 119 6-145 43-176 (324)
120 2qby_B CDC6 homolog 3, cell di 96.3 0.0033 1.1E-07 79.9 6.4 118 6-145 51-207 (384)
121 2ce7_A Cell division protein F 96.3 0.0043 1.5E-07 80.8 7.5 136 1334-1512 49-199 (476)
122 3uk6_A RUVB-like 2; hexameric 96.2 0.0052 1.8E-07 77.7 7.8 82 1420-1514 190-274 (368)
123 4b4t_K 26S protease regulatory 96.2 0.0048 1.6E-07 79.1 7.3 61 4-64 210-277 (428)
124 2z4s_A Chromosomal replication 96.2 0.0067 2.3E-07 78.8 8.6 121 5-145 135-273 (440)
125 4b4t_I 26S protease regulatory 96.2 0.013 4.4E-07 74.5 10.7 121 5-144 221-362 (437)
126 3hws_A ATP-dependent CLP prote 96.1 0.0017 6E-08 82.2 2.8 62 6-67 57-131 (363)
127 1i84_S Smooth muscle myosin he 96.1 0.0083 2.8E-07 87.0 10.1 90 2343-2432 1074-1163(1184)
128 3te6_A Regulatory protein SIR3 96.1 0.01 3.5E-07 73.3 8.9 116 6-146 51-209 (318)
129 2qby_A CDC6 homolog 1, cell di 96.1 0.0065 2.2E-07 76.9 7.5 120 5-145 50-207 (386)
130 1i84_S Smooth muscle myosin he 96.0 0.01 3.5E-07 86.1 10.2 21 779-799 167-187 (1184)
131 4b4t_M 26S protease regulatory 96.0 0.0075 2.6E-07 77.4 7.6 60 5-64 220-286 (434)
132 1iy2_A ATP-dependent metallopr 96.0 0.0083 2.8E-07 73.0 7.5 122 4-144 77-219 (278)
133 1ny5_A Transcriptional regulat 95.9 0.019 6.5E-07 73.3 11.1 204 1321-1571 147-367 (387)
134 4b4t_H 26S protease regulatory 95.9 0.016 5.5E-07 74.2 10.0 122 4-144 247-389 (467)
135 1ixz_A ATP-dependent metallopr 95.9 0.0094 3.2E-07 71.4 7.5 122 4-144 53-195 (254)
136 1c1g_A Tropomyosin; contractIl 95.8 4.4 0.00015 47.9 38.4 85 2345-2429 197-281 (284)
137 4b4t_J 26S protease regulatory 95.8 0.028 9.6E-07 71.2 11.2 121 5-144 187-328 (405)
138 2x8a_A Nuclear valosin-contain 95.7 0.021 7.3E-07 69.3 9.8 122 4-144 48-187 (274)
139 1jr3_A DNA polymerase III subu 95.6 0.023 7.8E-07 71.8 9.5 117 5-145 43-188 (373)
140 1fnn_A CDC6P, cell division co 95.5 0.019 6.4E-07 72.9 8.2 123 5-145 49-203 (389)
141 2ce7_A Cell division protein F 95.4 0.028 9.5E-07 73.3 9.6 120 5-143 54-194 (476)
142 1jr3_A DNA polymerase III subu 95.4 0.06 2.1E-06 67.9 12.6 136 363-518 36-178 (373)
143 1c1g_A Tropomyosin; contractIl 95.3 6.4 0.00022 46.5 37.5 92 2342-2433 187-278 (284)
144 2dhr_A FTSH; AAA+ protein, hex 95.2 0.021 7.4E-07 74.7 7.8 121 5-144 69-210 (499)
145 1a5t_A Delta prime, HOLB; zinc 95.1 0.074 2.5E-06 66.4 12.0 148 359-532 18-178 (334)
146 1sxj_C Activator 1 40 kDa subu 95.1 0.044 1.5E-06 68.6 10.0 116 6-145 52-179 (340)
147 3ec2_A DNA replication protein 95.1 0.0075 2.6E-07 68.2 2.4 38 1317-1354 16-58 (180)
148 1w5s_A Origin recognition comp 95.0 0.016 5.4E-07 74.3 5.4 155 1334-1514 50-230 (412)
149 1sxj_E Activator 1 40 kDa subu 95.0 0.029 9.9E-07 70.4 7.7 135 364-517 36-192 (354)
150 3dzd_A Transcriptional regulat 95.0 0.079 2.7E-06 67.1 11.6 165 1318-1513 136-317 (368)
151 2qgz_A Helicase loader, putati 95.0 0.013 4.5E-07 72.4 4.4 28 1326-1353 139-171 (308)
152 1in4_A RUVB, holliday junction 94.9 0.03 1E-06 70.0 7.5 85 1420-1513 103-194 (334)
153 2kjq_A DNAA-related protein; s 94.9 0.034 1.1E-06 61.1 6.9 56 5-68 41-99 (149)
154 2dhr_A FTSH; AAA+ protein, hex 94.9 0.026 9E-07 73.9 7.1 40 1468-1510 170-212 (499)
155 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.023 7.8E-07 68.4 5.5 89 366-470 5-94 (260)
156 2c95_A Adenylate kinase 1; tra 94.7 0.02 7E-07 65.2 4.7 29 361-389 5-33 (196)
157 1ly1_A Polynucleotide kinase; 94.6 0.0097 3.3E-07 66.9 1.8 22 366-387 3-24 (181)
158 3pxg_A Negative regulator of g 94.5 0.02 6.7E-07 75.1 4.5 115 5-145 206-335 (468)
159 1d2n_A N-ethylmaleimide-sensit 94.5 0.12 4E-06 62.5 11.0 86 364-472 63-160 (272)
160 1a5t_A Delta prime, HOLB; zinc 94.5 0.089 3.1E-06 65.7 10.2 116 6-145 30-177 (334)
161 3lw7_A Adenylate kinase relate 94.4 0.012 4E-07 65.5 1.9 90 367-471 3-100 (179)
162 3umf_A Adenylate kinase; rossm 94.4 0.032 1.1E-06 65.2 5.5 24 366-389 30-53 (217)
163 2w58_A DNAI, primosome compone 94.3 0.011 3.7E-07 68.1 1.1 28 1326-1353 40-73 (202)
164 1in4_A RUVB, holliday junction 94.1 0.053 1.8E-06 67.8 7.1 128 5-145 56-190 (334)
165 1sxj_E Activator 1 40 kDa subu 94.1 0.12 4.2E-06 64.6 10.6 115 6-145 42-203 (354)
166 2plr_A DTMP kinase, probable t 94.0 0.028 9.6E-07 64.9 4.1 25 366-390 5-29 (213)
167 2c9o_A RUVB-like 1; hexameric 93.9 0.022 7.4E-07 74.5 2.9 62 5-66 68-140 (456)
168 3jvv_A Twitching mobility prot 93.8 0.27 9.2E-06 61.8 12.7 98 362-470 119-218 (356)
169 4eaq_A DTMP kinase, thymidylat 93.7 0.14 4.8E-06 60.3 9.3 24 367-390 28-51 (229)
170 3k1j_A LON protease, ATP-depen 93.6 0.055 1.9E-06 73.1 6.4 69 449-517 202-286 (604)
171 2w58_A DNAI, primosome compone 93.4 0.025 8.6E-07 65.0 2.0 59 5-64 59-127 (202)
172 2gno_A DNA polymerase III, gam 93.2 0.12 4.1E-06 63.7 7.9 141 1327-1512 9-152 (305)
173 1ypw_A Transitional endoplasmi 93.2 0.029 9.8E-07 78.3 2.5 63 3-65 514-583 (806)
174 2xb4_A Adenylate kinase; ATP-b 93.1 0.046 1.6E-06 64.2 3.7 22 368-389 3-24 (223)
175 3k1j_A LON protease, ATP-depen 92.9 0.037 1.3E-06 74.8 2.9 67 52-129 201-277 (604)
176 3hjn_A DTMP kinase, thymidylat 92.8 0.37 1.2E-05 55.4 10.6 23 368-390 3-25 (197)
177 4hlc_A DTMP kinase, thymidylat 92.8 0.33 1.1E-05 56.2 10.2 22 368-389 5-26 (205)
178 2z0h_A DTMP kinase, thymidylat 92.7 0.1 3.6E-06 59.3 5.9 23 368-390 3-25 (197)
179 2gno_A DNA polymerase III, gam 91.9 0.27 9.3E-06 60.5 8.6 114 6-145 24-149 (305)
180 3lv8_A DTMP kinase, thymidylat 91.9 0.14 4.6E-06 60.7 5.6 96 367-470 29-149 (236)
181 1ltq_A Polynucleotide kinase; 91.9 0.08 2.7E-06 64.9 3.9 23 366-388 3-25 (301)
182 2qgz_A Helicase loader, putati 91.9 0.092 3.1E-06 64.8 4.4 59 5-64 157-226 (308)
183 3v9p_A DTMP kinase, thymidylat 91.8 0.27 9.2E-06 57.8 8.0 25 367-391 27-51 (227)
184 2fna_A Conserved hypothetical 91.7 0.13 4.5E-06 64.0 5.6 31 5-35 35-65 (357)
185 1kgd_A CASK, peripheral plasma 91.7 0.074 2.5E-06 60.1 3.0 23 367-389 7-29 (180)
186 1w5s_A Origin recognition comp 91.5 0.1 3.5E-06 66.7 4.4 33 6-38 58-99 (412)
187 3ec2_A DNA replication protein 91.3 0.12 4.3E-06 58.1 4.3 26 365-390 38-63 (180)
188 1ak2_A Adenylate kinase isoenz 91.3 0.19 6.4E-06 59.2 6.0 24 366-389 17-40 (233)
189 1ic2_A Tropomyosin alpha chain 91.2 1.4 4.9E-05 43.0 11.0 70 2336-2405 6-75 (81)
190 2ze6_A Isopentenyl transferase 91.2 0.25 8.5E-06 59.1 7.0 23 367-389 3-25 (253)
191 2eyu_A Twitching motility prot 91.2 0.19 6.4E-06 60.5 5.9 24 367-390 27-50 (261)
192 4edh_A DTMP kinase, thymidylat 91.1 0.2 6.9E-06 58.3 6.0 95 367-469 8-125 (213)
193 3kb2_A SPBC2 prophage-derived 91.0 0.11 3.6E-06 57.8 3.4 23 367-389 3-25 (173)
194 1kag_A SKI, shikimate kinase I 91.0 0.092 3.1E-06 58.5 2.8 24 366-389 5-28 (173)
195 1lvg_A Guanylate kinase, GMP k 90.8 0.1 3.4E-06 60.1 3.0 24 366-389 5-28 (198)
196 1qhx_A CPT, protein (chloramph 90.6 0.099 3.4E-06 58.6 2.7 24 366-389 4-27 (178)
197 4gkw_A Spindle assembly abnorm 90.6 3 0.0001 42.6 12.8 90 2338-2427 13-102 (167)
198 3uie_A Adenylyl-sulfate kinase 90.5 0.12 4.2E-06 59.3 3.4 25 366-390 26-50 (200)
199 4tmk_A Protein (thymidylate ki 90.4 0.18 6E-06 58.8 4.6 97 367-470 5-127 (213)
200 1ny5_A Transcriptional regulat 90.4 0.42 1.4E-05 60.9 8.5 97 6-112 166-282 (387)
201 2eqb_B RAB guanine nucleotide 90.3 2.7 9.3E-05 41.8 11.9 92 2339-2430 1-93 (97)
202 1ye8_A Protein THEP1, hypothet 90.2 0.14 4.7E-06 58.0 3.4 23 368-390 3-25 (178)
203 1ixz_A ATP-dependent metallopr 90.2 0.15 5.3E-06 60.7 3.9 27 363-389 47-73 (254)
204 3tr0_A Guanylate kinase, GMP k 90.1 0.12 4.3E-06 59.1 3.0 23 367-389 9-31 (205)
205 2x8a_A Nuclear valosin-contain 90.1 0.11 3.6E-06 63.1 2.5 27 363-389 42-68 (274)
206 3vaa_A Shikimate kinase, SK; s 90.1 0.14 4.8E-06 58.8 3.3 24 366-389 26-49 (199)
207 3trf_A Shikimate kinase, SK; a 89.9 0.15 5.1E-06 57.5 3.4 25 365-389 5-29 (185)
208 3a00_A Guanylate kinase, GMP k 89.9 0.14 4.7E-06 58.2 3.0 22 368-389 4-25 (186)
209 1f5n_A Interferon-induced guan 89.8 65 0.0022 42.9 34.4 84 2351-2437 505-590 (592)
210 2vhj_A Ntpase P4, P4; non- hyd 89.8 0.36 1.2E-05 59.3 6.7 94 5-114 128-238 (331)
211 2qen_A Walker-type ATPase; unk 89.8 0.2 6.9E-06 62.2 4.7 30 5-36 36-65 (350)
212 1zp6_A Hypothetical protein AT 89.8 0.13 4.5E-06 58.2 2.8 23 366-388 10-32 (191)
213 4eun_A Thermoresistant glucoki 89.7 0.16 5.3E-06 58.4 3.3 23 367-389 31-53 (200)
214 2vhj_A Ntpase P4, P4; non- hyd 89.7 0.16 5.5E-06 62.3 3.5 19 1335-1353 124-142 (331)
215 2v4h_A NF-kappa-B essential mo 89.6 3.5 0.00012 41.7 12.2 83 2344-2432 25-109 (110)
216 3c8u_A Fructokinase; YP_612366 89.6 0.17 5.7E-06 58.6 3.5 26 365-390 22-47 (208)
217 1kht_A Adenylate kinase; phosp 89.6 0.17 5.8E-06 57.1 3.5 24 367-390 5-28 (192)
218 3t61_A Gluconokinase; PSI-biol 89.4 0.17 5.8E-06 58.1 3.3 23 367-389 20-42 (202)
219 1s96_A Guanylate kinase, GMP k 89.4 0.16 5.4E-06 59.5 3.1 36 354-389 5-40 (219)
220 3sop_A Neuronal-specific septi 89.4 0.16 5.6E-06 61.3 3.3 24 366-389 3-26 (270)
221 2rhm_A Putative kinase; P-loop 89.3 0.17 5.9E-06 57.2 3.3 24 366-389 6-29 (193)
222 3tau_A Guanylate kinase, GMP k 89.3 0.16 5.5E-06 58.8 3.0 23 367-389 10-32 (208)
223 1iy2_A ATP-dependent metallopr 89.2 0.29 9.9E-06 59.3 5.4 27 363-389 71-97 (278)
224 1nks_A Adenylate kinase; therm 89.2 0.19 6.4E-06 56.8 3.5 24 367-390 3-26 (194)
225 1knq_A Gluconate kinase; ALFA/ 89.2 0.18 6.3E-06 56.3 3.3 24 366-389 9-32 (175)
226 2qor_A Guanylate kinase; phosp 89.1 0.15 5E-06 58.8 2.6 24 366-389 13-36 (204)
227 1ic2_A Tropomyosin alpha chain 88.9 3.5 0.00012 40.2 11.7 69 2341-2409 4-72 (81)
228 2j41_A Guanylate kinase; GMP, 88.9 0.18 6E-06 57.9 3.0 23 367-389 8-30 (207)
229 1via_A Shikimate kinase; struc 88.9 0.2 6.8E-06 56.1 3.3 23 367-389 6-28 (175)
230 1z6g_A Guanylate kinase; struc 88.8 0.18 6.1E-06 58.9 3.0 22 367-388 25-46 (218)
231 1cke_A CK, MSSA, protein (cyti 88.8 0.19 6.5E-06 58.6 3.2 24 366-389 6-29 (227)
232 3cm0_A Adenylate kinase; ATP-b 88.8 0.2 6.9E-06 56.4 3.3 23 367-389 6-28 (186)
233 2bdt_A BH3686; alpha-beta prot 88.8 0.19 6.3E-06 57.0 3.0 21 367-387 4-24 (189)
234 2bbw_A Adenylate kinase 4, AK4 88.6 0.2 7E-06 59.4 3.4 24 366-389 28-51 (246)
235 3iij_A Coilin-interacting nucl 88.5 0.22 7.5E-06 55.9 3.4 24 366-389 12-35 (180)
236 1kht_A Adenylate kinase; phosp 88.5 0.74 2.5E-05 51.8 7.8 50 5-65 8-63 (192)
237 3ney_A 55 kDa erythrocyte memb 88.4 0.2 6.9E-06 57.5 3.0 24 366-389 20-43 (197)
238 3u1c_A Tropomyosin alpha-1 cha 88.4 6.2 0.00021 40.1 13.6 77 2333-2409 6-82 (101)
239 1znw_A Guanylate kinase, GMP k 88.4 0.2 6.8E-06 57.9 3.0 23 367-389 22-44 (207)
240 1ex7_A Guanylate kinase; subst 88.4 0.2 7E-06 57.0 3.0 22 368-389 4-25 (186)
241 1tue_A Replication protein E1; 88.4 0.36 1.2E-05 55.5 5.0 26 364-389 57-82 (212)
242 3gmt_A Adenylate kinase; ssgci 88.3 0.22 7.6E-06 58.4 3.3 23 367-389 10-32 (230)
243 2ewv_A Twitching motility prot 88.3 1.2 4.3E-05 56.2 10.4 89 366-465 137-226 (372)
244 3asz_A Uridine kinase; cytidin 88.2 0.23 7.8E-06 57.3 3.3 23 367-389 8-30 (211)
245 3dl0_A Adenylate kinase; phosp 88.0 0.37 1.3E-05 55.8 4.9 91 368-472 3-102 (216)
246 1e6c_A Shikimate kinase; phosp 88.0 0.25 8.5E-06 54.9 3.3 23 367-389 4-26 (173)
247 3fb4_A Adenylate kinase; psych 87.9 0.25 8.4E-06 57.3 3.4 22 368-389 3-24 (216)
248 2orw_A Thymidine kinase; TMTK, 87.8 0.47 1.6E-05 53.8 5.6 31 448-478 76-108 (184)
249 4gp7_A Metallophosphoesterase; 87.6 0.22 7.6E-06 55.7 2.6 19 367-385 11-29 (171)
250 1rz3_A Hypothetical protein rb 87.5 0.31 1.1E-05 56.0 3.9 25 366-390 23-47 (201)
251 1tev_A UMP-CMP kinase; ploop, 87.5 0.27 9.2E-06 55.6 3.4 24 366-389 4-27 (196)
252 2iyv_A Shikimate kinase, SK; t 87.5 0.27 9.4E-06 55.3 3.4 23 367-389 4-26 (184)
253 3bas_A Myosin heavy chain, str 87.4 3.8 0.00013 40.7 11.0 85 2337-2429 2-86 (89)
254 2jaq_A Deoxyguanosine kinase; 87.4 0.27 9.3E-06 56.1 3.3 22 368-389 3-24 (205)
255 1g41_A Heat shock protein HSLU 87.3 0.22 7.6E-06 64.0 2.7 33 6-38 56-88 (444)
256 3ld9_A DTMP kinase, thymidylat 87.3 0.51 1.7E-05 55.3 5.5 97 367-470 23-141 (223)
257 4e22_A Cytidylate kinase; P-lo 87.3 0.24 8.2E-06 59.2 2.8 24 366-389 28-51 (252)
258 1zak_A Adenylate kinase; ATP:A 87.2 0.28 9.7E-06 57.1 3.3 23 367-389 7-29 (222)
259 2pt5_A Shikimate kinase, SK; a 87.0 0.3 1E-05 54.0 3.3 22 368-389 3-24 (168)
260 2bwj_A Adenylate kinase 5; pho 87.0 0.36 1.2E-05 54.9 4.0 26 364-389 11-36 (199)
261 1y63_A LMAJ004144AAA protein; 86.9 0.3 1E-05 55.3 3.2 22 367-388 12-33 (184)
262 2cdn_A Adenylate kinase; phosp 86.9 0.31 1.1E-05 55.8 3.4 23 367-389 22-44 (201)
263 1htw_A HI0065; nucleotide-bind 86.9 0.25 8.7E-06 54.7 2.5 27 363-389 29-57 (158)
264 1qf9_A UMP/CMP kinase, protein 86.8 0.31 1.1E-05 55.0 3.3 24 366-389 7-30 (194)
265 2kjq_A DNAA-related protein; s 86.8 0.34 1.2E-05 53.0 3.5 26 365-390 36-61 (149)
266 2yhs_A FTSY, cell division pro 86.8 1.1 3.9E-05 58.0 8.8 25 366-390 294-318 (503)
267 2ius_A DNA translocase FTSK; n 86.7 0.59 2E-05 61.2 6.3 43 367-414 169-211 (512)
268 2fxo_A Myosin heavy chain, car 86.6 6.3 0.00022 41.9 13.0 64 2368-2431 59-122 (129)
269 3lnc_A Guanylate kinase, GMP k 86.5 0.23 8E-06 58.3 2.1 22 368-389 30-52 (231)
270 1nn5_A Similar to deoxythymidy 86.5 0.34 1.2E-05 55.8 3.5 24 367-390 11-34 (215)
271 3a8t_A Adenylate isopentenyltr 86.5 0.35 1.2E-05 59.9 3.7 23 367-389 42-64 (339)
272 1zuh_A Shikimate kinase; alpha 86.4 0.34 1.2E-05 53.7 3.3 23 367-389 9-31 (168)
273 2wwf_A Thymidilate kinase, put 86.4 0.35 1.2E-05 55.6 3.5 25 366-390 11-35 (212)
274 2fxo_A Myosin heavy chain, car 86.4 12 0.0004 39.8 14.9 93 2338-2431 2-94 (129)
275 3b9q_A Chloroplast SRP recepto 86.4 0.98 3.4E-05 55.4 7.6 25 366-390 101-125 (302)
276 2yvu_A Probable adenylyl-sulfa 86.3 0.36 1.2E-05 54.5 3.5 25 366-390 14-38 (186)
277 1aky_A Adenylate kinase; ATP:A 86.3 0.34 1.2E-05 56.4 3.4 23 367-389 6-28 (220)
278 2vli_A Antibiotic resistance p 86.2 0.25 8.7E-06 55.4 2.1 24 366-389 6-29 (183)
279 3sr0_A Adenylate kinase; phosp 86.0 0.36 1.2E-05 55.9 3.4 22 368-389 3-24 (206)
280 2pez_A Bifunctional 3'-phospho 86.0 0.37 1.3E-05 54.1 3.4 24 367-390 7-30 (179)
281 2efr_A General control protein 86.0 15 0.00051 40.1 15.5 101 2326-2430 15-129 (155)
282 2f1r_A Molybdopterin-guanine d 86.0 0.23 8E-06 55.7 1.6 24 367-390 4-27 (171)
283 1zd8_A GTP:AMP phosphotransfer 86.0 0.3 1E-05 57.2 2.6 24 366-389 8-31 (227)
284 1gvn_B Zeta; postsegregational 85.9 0.31 1.1E-05 59.5 2.8 24 366-389 34-57 (287)
285 3tif_A Uncharacterized ABC tra 85.9 0.28 9.4E-06 58.1 2.3 22 367-388 33-54 (235)
286 1jjv_A Dephospho-COA kinase; P 85.9 0.29 1E-05 56.2 2.5 21 367-387 4-24 (206)
287 2i3b_A HCR-ntpase, human cance 85.9 0.39 1.3E-05 54.8 3.5 23 368-390 4-26 (189)
288 2orw_A Thymidine kinase; TMTK, 85.7 0.48 1.6E-05 53.8 4.1 67 6-72 9-96 (184)
289 1e4v_A Adenylate kinase; trans 85.6 0.38 1.3E-05 55.7 3.3 22 368-389 3-24 (214)
290 1rj9_A FTSY, signal recognitio 85.6 0.39 1.3E-05 59.0 3.5 24 367-390 104-127 (304)
291 3nwj_A ATSK2; P loop, shikimat 85.4 0.39 1.3E-05 57.3 3.3 25 365-389 48-72 (250)
292 2pbr_A DTMP kinase, thymidylat 85.4 0.41 1.4E-05 54.1 3.3 23 368-390 3-25 (195)
293 3f8t_A Predicted ATPase involv 85.4 0.25 8.7E-06 63.3 1.7 74 1420-1503 301-385 (506)
294 2if2_A Dephospho-COA kinase; a 85.4 0.37 1.3E-05 55.2 3.0 21 368-389 4-24 (204)
295 3u1c_A Tropomyosin alpha-1 cha 85.3 6.5 0.00022 40.0 11.7 63 2344-2406 24-86 (101)
296 1gtv_A TMK, thymidylate kinase 85.2 0.26 9E-06 56.8 1.6 24 367-390 2-25 (214)
297 3exa_A TRNA delta(2)-isopenten 85.1 0.59 2E-05 57.2 4.7 24 366-389 4-27 (322)
298 3b85_A Phosphate starvation-in 85.1 0.37 1.3E-05 55.9 2.8 24 365-388 22-45 (208)
299 3u59_A Tropomyosin beta chain; 84.9 10 0.00036 38.5 13.0 73 2334-2406 7-79 (101)
300 2og2_A Putative signal recogni 84.8 1.2 4.2E-05 55.7 7.6 25 366-390 158-182 (359)
301 3be4_A Adenylate kinase; malar 84.8 0.44 1.5E-05 55.4 3.3 23 367-389 7-29 (217)
302 1ukz_A Uridylate kinase; trans 84.7 0.38 1.3E-05 55.1 2.7 23 367-389 17-39 (203)
303 2c9o_A RUVB-like 1; hexameric 84.7 0.79 2.7E-05 59.7 6.0 25 365-389 63-87 (456)
304 2onk_A Molybdate/tungstate ABC 84.5 0.41 1.4E-05 56.8 2.8 22 367-388 26-47 (240)
305 2dfs_A Myosin-5A; myosin-V, in 84.5 3.9 0.00013 58.3 13.2 77 2351-2430 971-1047(1080)
306 2pcj_A ABC transporter, lipopr 84.5 0.35 1.2E-05 56.7 2.3 22 367-388 32-53 (224)
307 3r20_A Cytidylate kinase; stru 84.4 0.5 1.7E-05 55.7 3.6 25 365-389 9-33 (233)
308 1np6_A Molybdopterin-guanine d 84.4 0.82 2.8E-05 51.4 5.2 26 365-390 6-31 (174)
309 2p5t_B PEZT; postsegregational 84.4 0.33 1.1E-05 58.0 2.0 24 366-389 33-56 (253)
310 3u59_A Tropomyosin beta chain; 84.3 7.5 0.00026 39.5 11.7 68 2342-2409 22-89 (101)
311 2v9p_A Replication protein E1; 84.3 0.47 1.6E-05 58.2 3.4 25 365-389 126-150 (305)
312 1m7g_A Adenylylsulfate kinase; 84.3 0.51 1.7E-05 54.5 3.5 25 366-390 26-50 (211)
313 3aez_A Pantothenate kinase; tr 84.2 0.49 1.7E-05 58.4 3.5 25 366-390 91-115 (312)
314 2cbz_A Multidrug resistance-as 84.2 0.37 1.3E-05 57.1 2.3 22 367-388 33-54 (237)
315 2ga8_A Hypothetical 39.9 kDa p 84.2 0.99 3.4E-05 56.2 6.2 27 365-391 24-50 (359)
316 3tlx_A Adenylate kinase 2; str 84.2 0.48 1.6E-05 56.2 3.4 24 366-389 30-53 (243)
317 2jee_A YIIU; FTSZ, septum, coi 84.2 7.7 0.00026 37.5 10.7 67 2362-2428 11-77 (81)
318 1p9r_A General secretion pathw 84.2 0.57 1.9E-05 60.1 4.2 26 364-389 165-191 (418)
319 2v54_A DTMP kinase, thymidylat 84.1 0.45 1.6E-05 54.3 3.0 23 367-389 6-28 (204)
320 3kta_A Chromosome segregation 84.1 0.44 1.5E-05 53.5 2.8 23 367-389 28-50 (182)
321 3d3q_A TRNA delta(2)-isopenten 84.1 1.6 5.3E-05 54.3 7.9 24 366-389 8-31 (340)
322 2qm8_A GTPase/ATPase; G protei 83.9 1.2 4.1E-05 55.5 6.9 41 366-413 56-96 (337)
323 3dzd_A Transcriptional regulat 83.9 1.3 4.4E-05 56.0 7.2 71 6-77 158-247 (368)
324 2jeo_A Uridine-cytidine kinase 83.9 0.51 1.7E-05 56.0 3.4 23 367-389 27-49 (245)
325 3e70_C DPA, signal recognition 83.9 0.52 1.8E-05 58.5 3.5 26 365-390 129-154 (328)
326 3foz_A TRNA delta(2)-isopenten 83.5 0.69 2.4E-05 56.5 4.3 24 366-389 11-34 (316)
327 3fvq_A Fe(3+) IONS import ATP- 83.5 0.46 1.6E-05 59.5 2.8 22 367-388 32-53 (359)
328 1sgw_A Putative ABC transporte 83.4 0.42 1.4E-05 55.7 2.3 21 368-388 38-58 (214)
329 2qt1_A Nicotinamide riboside k 83.3 0.44 1.5E-05 54.8 2.5 24 366-389 22-45 (207)
330 1xjc_A MOBB protein homolog; s 83.3 0.65 2.2E-05 51.9 3.7 39 366-411 5-43 (169)
331 2jee_A YIIU; FTSZ, septum, coi 83.3 5.5 0.00019 38.5 9.3 70 2366-2435 8-77 (81)
332 3jsv_C NF-kappa-B essential mo 83.3 13 0.00045 36.7 12.1 87 2344-2436 3-91 (94)
333 1b0u_A Histidine permease; ABC 83.1 0.43 1.5E-05 57.4 2.3 22 367-388 34-55 (262)
334 3gfo_A Cobalt import ATP-bindi 83.1 0.43 1.5E-05 57.7 2.3 22 367-388 36-57 (275)
335 2p6r_A Afuhel308 helicase; pro 83.0 0.78 2.7E-05 63.1 5.1 50 332-384 10-59 (702)
336 2ff7_A Alpha-hemolysin translo 82.9 0.45 1.5E-05 56.7 2.3 23 367-389 37-59 (247)
337 1mv5_A LMRA, multidrug resista 82.9 0.44 1.5E-05 56.6 2.3 23 367-389 30-52 (243)
338 2oap_1 GSPE-2, type II secreti 82.9 0.56 1.9E-05 61.8 3.4 29 361-389 256-284 (511)
339 2p67_A LAO/AO transport system 82.8 1.1 3.9E-05 55.8 6.1 41 366-413 57-97 (341)
340 1g6h_A High-affinity branched- 82.8 0.45 1.5E-05 57.0 2.3 22 367-388 35-56 (257)
341 4a74_A DNA repair and recombin 82.8 0.52 1.8E-05 54.8 2.8 24 366-389 26-49 (231)
342 4g1u_C Hemin import ATP-bindin 82.8 0.45 1.5E-05 57.3 2.3 22 367-388 39-60 (266)
343 2qag_B Septin-6, protein NEDD5 82.7 0.48 1.6E-05 60.6 2.6 20 368-387 45-64 (427)
344 1ji0_A ABC transporter; ATP bi 82.7 0.46 1.6E-05 56.3 2.3 22 367-388 34-55 (240)
345 1xjc_A MOBB protein homolog; s 82.6 0.62 2.1E-05 52.1 3.2 53 5-59 9-78 (169)
346 2pl3_A Probable ATP-dependent 82.5 1.6 5.4E-05 51.1 6.9 48 334-384 34-81 (236)
347 3rlf_A Maltose/maltodextrin im 82.5 0.53 1.8E-05 59.4 2.8 22 367-388 31-52 (381)
348 2ehv_A Hypothetical protein PH 82.5 0.54 1.9E-05 55.4 2.8 22 367-388 32-53 (251)
349 1uf9_A TT1252 protein; P-loop, 82.4 0.58 2E-05 53.3 3.0 24 365-388 8-31 (203)
350 2d2e_A SUFC protein; ABC-ATPas 82.4 0.55 1.9E-05 56.0 2.8 22 367-388 31-52 (250)
351 2zu0_C Probable ATP-dependent 82.3 0.55 1.9E-05 56.6 2.8 22 367-388 48-69 (267)
352 1z47_A CYSA, putative ABC-tran 82.3 0.54 1.9E-05 58.9 2.8 22 367-388 43-64 (355)
353 2ghi_A Transport protein; mult 82.2 0.49 1.7E-05 56.8 2.3 22 367-388 48-69 (260)
354 2pze_A Cystic fibrosis transme 82.2 0.5 1.7E-05 55.6 2.3 22 367-388 36-57 (229)
355 2gza_A Type IV secretion syste 82.1 0.54 1.9E-05 59.2 2.8 29 361-389 171-199 (361)
356 2yyz_A Sugar ABC transporter, 82.1 0.56 1.9E-05 58.9 2.8 22 367-388 31-52 (359)
357 2olj_A Amino acid ABC transpor 82.1 0.5 1.7E-05 56.8 2.3 22 367-388 52-73 (263)
358 1tq4_A IIGP1, interferon-induc 82.0 1.1 3.7E-05 57.3 5.5 36 353-388 56-92 (413)
359 2it1_A 362AA long hypothetical 82.0 0.57 1.9E-05 58.9 2.8 22 367-388 31-52 (362)
360 2grj_A Dephospho-COA kinase; T 81.9 0.79 2.7E-05 52.4 3.8 23 367-389 14-36 (192)
361 3oja_B Anopheles plasmodium-re 81.9 8.1 0.00028 51.8 14.4 72 2360-2431 512-583 (597)
362 2ixe_A Antigen peptide transpo 81.9 0.51 1.7E-05 57.0 2.3 23 367-389 47-69 (271)
363 2iut_A DNA translocase FTSK; n 81.8 1.1 3.9E-05 59.0 5.7 42 367-413 216-257 (574)
364 1vpl_A ABC transporter, ATP-bi 81.8 0.52 1.8E-05 56.4 2.3 22 367-388 43-64 (256)
365 3iuy_A Probable ATP-dependent 81.6 2 6.8E-05 49.9 7.3 49 333-384 28-76 (228)
366 1odf_A YGR205W, hypothetical 3 81.5 0.73 2.5E-05 56.2 3.5 27 365-391 31-57 (290)
367 1ex7_A Guanylate kinase; subst 81.5 0.35 1.2E-05 55.0 0.6 22 782-803 2-23 (186)
368 1g29_1 MALK, maltose transport 81.4 0.61 2.1E-05 58.9 2.8 22 367-388 31-52 (372)
369 3gd7_A Fusion complex of cysti 81.4 0.6 2.1E-05 59.2 2.8 22 367-388 49-70 (390)
370 1v43_A Sugar-binding transport 81.4 0.61 2.1E-05 58.8 2.8 22 367-388 39-60 (372)
371 3upu_A ATP-dependent DNA helic 81.4 1 3.4E-05 58.7 5.0 19 6-24 51-69 (459)
372 3mq7_A Bone marrow stromal ant 81.3 12 0.00042 38.0 11.3 96 2311-2415 6-101 (121)
373 1sq5_A Pantothenate kinase; P- 81.2 0.71 2.4E-05 56.8 3.3 24 366-389 81-104 (308)
374 2ihy_A ABC transporter, ATP-bi 81.2 0.56 1.9E-05 56.9 2.3 23 367-389 49-71 (279)
375 2qi9_C Vitamin B12 import ATP- 81.1 0.57 1.9E-05 55.9 2.3 23 367-389 28-50 (249)
376 1vht_A Dephospho-COA kinase; s 81.1 0.71 2.4E-05 53.5 3.1 22 366-387 5-26 (218)
377 1oix_A RAS-related protein RAB 81.1 0.7 2.4E-05 52.3 3.0 23 366-388 30-52 (191)
378 3dm5_A SRP54, signal recogniti 81.0 3.5 0.00012 53.0 9.6 96 365-470 100-208 (443)
379 2va8_A SSO2462, SKI2-type heli 80.8 1.4 5E-05 60.6 6.6 49 334-384 17-65 (715)
380 3kl4_A SRP54, signal recogniti 80.8 2.5 8.4E-05 54.3 8.2 96 368-471 100-208 (433)
381 1g41_A Heat shock protein HSLU 80.8 0.61 2.1E-05 60.0 2.6 25 365-389 50-74 (444)
382 3ec1_A YQEH GTPase; atnos1, at 80.7 1.9 6.6E-05 54.4 7.1 61 329-389 117-186 (369)
383 3nh6_A ATP-binding cassette SU 80.6 0.49 1.7E-05 58.1 1.6 23 367-389 82-104 (306)
384 3ake_A Cytidylate kinase; CMP 80.6 0.81 2.8E-05 52.3 3.4 23 367-389 4-26 (208)
385 2zj8_A DNA helicase, putative 80.5 1.4 5E-05 60.6 6.4 48 334-383 10-57 (720)
386 3ly5_A ATP-dependent RNA helic 80.5 1.6 5.4E-05 52.3 6.0 49 333-384 62-110 (262)
387 2nq2_C Hypothetical ABC transp 80.5 0.61 2.1E-05 55.7 2.3 23 367-389 33-55 (253)
388 3hnw_A Uncharacterized protein 80.5 12 0.00041 40.2 12.0 67 2326-2392 65-131 (138)
389 2yz2_A Putative ABC transporte 80.4 0.62 2.1E-05 56.1 2.3 22 367-388 35-56 (266)
390 3d31_A Sulfate/molybdate ABC t 80.3 0.52 1.8E-05 58.9 1.7 22 367-388 28-49 (348)
391 3tqc_A Pantothenate kinase; bi 80.2 0.82 2.8E-05 56.5 3.4 24 367-390 94-117 (321)
392 2f9l_A RAB11B, member RAS onco 80.2 0.78 2.7E-05 52.2 3.0 23 366-388 6-28 (199)
393 2yv5_A YJEQ protein; hydrolase 80.0 1 3.5E-05 55.3 4.1 22 365-386 165-186 (302)
394 2dfs_A Myosin-5A; myosin-V, in 80.0 25 0.00086 50.2 18.6 54 2082-2135 960-1013(1080)
395 1f2t_A RAD50 ABC-ATPase; DNA d 79.9 0.93 3.2E-05 49.5 3.4 23 367-389 25-47 (149)
396 2npi_A Protein CLP1; CLP1-PCF1 79.9 0.71 2.4E-05 59.9 2.8 28 363-390 134-163 (460)
397 2gxq_A Heat resistant RNA depe 79.9 1.2 4.1E-05 50.8 4.5 48 334-384 10-57 (207)
398 1vma_A Cell division protein F 79.8 0.9 3.1E-05 55.8 3.5 25 366-390 105-129 (306)
399 2pjz_A Hypothetical protein ST 79.7 0.67 2.3E-05 55.7 2.3 21 367-387 32-52 (263)
400 1zj6_A ADP-ribosylation factor 79.7 1.3 4.3E-05 49.7 4.5 35 351-387 4-38 (187)
401 3llm_A ATP-dependent RNA helic 79.6 1.1 3.9E-05 52.6 4.2 24 363-386 74-97 (235)
402 3hnw_A Uncharacterized protein 79.6 16 0.00055 39.3 12.6 68 2333-2400 65-132 (138)
403 3crm_A TRNA delta(2)-isopenten 79.5 0.74 2.5E-05 56.8 2.6 22 368-389 8-29 (323)
404 3cr8_A Sulfate adenylyltranfer 79.5 0.67 2.3E-05 61.5 2.4 39 352-390 354-394 (552)
405 3oja_B Anopheles plasmodium-re 79.5 17 0.00057 48.7 16.2 33 2106-2138 484-516 (597)
406 1svm_A Large T antigen; AAA+ f 79.2 1.2 4.3E-05 56.1 4.6 28 362-389 166-193 (377)
407 1nks_A Adenylate kinase; therm 79.1 1.8 6.1E-05 48.6 5.5 28 5-32 6-36 (194)
408 3tui_C Methionine import ATP-b 79.0 0.82 2.8E-05 57.3 2.8 22 367-388 56-77 (366)
409 3exa_A TRNA delta(2)-isopenten 79.0 1 3.5E-05 55.1 3.6 56 5-69 8-63 (322)
410 3dkp_A Probable ATP-dependent 78.9 2.9 9.9E-05 49.2 7.5 49 333-384 37-85 (245)
411 1vec_A ATP-dependent RNA helic 78.9 1.5 5.1E-05 50.0 4.9 48 334-384 12-59 (206)
412 2qmh_A HPR kinase/phosphorylas 78.9 0.92 3.2E-05 51.9 2.9 23 366-388 35-57 (205)
413 2bbs_A Cystic fibrosis transme 78.8 0.74 2.5E-05 56.1 2.3 22 367-388 66-87 (290)
414 1uj2_A Uridine-cytidine kinase 78.7 0.87 3E-05 54.2 2.8 25 366-390 23-47 (252)
415 2px0_A Flagellar biosynthesis 78.5 1 3.5E-05 55.0 3.5 25 366-390 106-130 (296)
416 1qhx_A CPT, protein (chloramph 78.5 1 3.6E-05 50.1 3.3 30 5-34 8-37 (178)
417 2pt7_A CAG-ALFA; ATPase, prote 78.4 0.86 2.9E-05 56.7 2.8 27 363-389 169-195 (330)
418 1oxx_K GLCV, glucose, ABC tran 78.3 0.55 1.9E-05 58.9 1.0 22 367-388 33-54 (353)
419 2w0m_A SSO2452; RECA, SSPF, un 78.2 1.1 3.6E-05 52.1 3.4 25 366-390 24-48 (235)
420 2wsm_A Hydrogenase expression/ 78.2 1.6 5.4E-05 50.4 4.8 44 345-389 11-54 (221)
421 3trf_A Shikimate kinase, SK; a 78.1 0.93 3.2E-05 50.9 2.8 25 5-29 10-34 (185)
422 2wji_A Ferrous iron transport 78.1 0.97 3.3E-05 49.7 2.8 22 366-387 4-25 (165)
423 2qnr_A Septin-2, protein NEDD5 78.1 0.86 2.9E-05 55.9 2.6 23 365-387 18-40 (301)
424 1z2a_A RAS-related protein RAB 78.0 1 3.5E-05 49.0 3.0 23 365-387 5-27 (168)
425 2cvh_A DNA repair and recombin 78.0 1.8 6.1E-05 49.8 5.2 41 6-46 26-66 (220)
426 2www_A Methylmalonic aciduria 77.7 1.5 5E-05 55.1 4.6 41 366-413 75-115 (349)
427 1q3t_A Cytidylate kinase; nucl 77.7 1.1 3.9E-05 52.6 3.4 23 367-389 18-40 (236)
428 2zej_A Dardarin, leucine-rich 77.6 0.96 3.3E-05 50.7 2.7 22 366-387 3-24 (184)
429 1kgd_A CASK, peripheral plasma 77.6 1.1 3.7E-05 50.4 3.1 20 1808-1827 8-27 (180)
430 2e87_A Hypothetical protein PH 77.5 1.6 5.5E-05 54.8 4.9 23 366-388 168-190 (357)
431 2dyk_A GTP-binding protein; GT 77.5 1.1 3.8E-05 48.5 3.0 21 367-387 3-23 (161)
432 3kb2_A SPBC2 prophage-derived 77.4 1 3.4E-05 49.7 2.7 24 5-28 6-29 (173)
433 1u0l_A Probable GTPase ENGC; p 77.3 1.3 4.5E-05 54.3 3.9 23 365-387 169-191 (301)
434 2ce2_X GTPase HRAS; signaling 77.3 1.1 3.8E-05 48.4 3.0 22 366-387 4-25 (166)
435 1lw7_A Transcriptional regulat 77.2 0.9 3.1E-05 57.3 2.5 25 365-389 170-194 (365)
436 3ni0_A Bone marrow stromal ant 77.2 21 0.00073 35.0 11.1 77 2326-2405 11-87 (99)
437 2rcn_A Probable GTPase ENGC; Y 77.2 1 3.4E-05 56.5 2.8 23 365-387 215-237 (358)
438 1qde_A EIF4A, translation init 77.1 1.6 5.4E-05 50.6 4.4 47 334-383 23-69 (224)
439 3upu_A ATP-dependent DNA helic 77.1 2.2 7.4E-05 55.5 6.2 25 366-390 46-70 (459)
440 4ag6_A VIRB4 ATPase, type IV s 76.9 1.5 5E-05 55.9 4.4 23 367-389 37-59 (392)
441 1kao_A RAP2A; GTP-binding prot 76.8 1.2 4E-05 48.4 3.0 22 366-387 4-25 (167)
442 1a7j_A Phosphoribulokinase; tr 76.8 1 3.5E-05 55.0 2.7 26 365-390 5-30 (290)
443 3foz_A TRNA delta(2)-isopenten 76.7 1.2 4.2E-05 54.3 3.4 57 5-70 15-71 (316)
444 3h2y_A GTPase family protein; 76.7 6.1 0.00021 49.7 9.9 61 329-389 115-184 (368)
445 1lvg_A Guanylate kinase, GMP k 76.7 1.2 4.2E-05 50.9 3.2 21 1807-1827 6-26 (198)
446 1zp6_A Hypothetical protein AT 76.6 1.2 4E-05 50.3 3.0 19 1808-1826 12-30 (191)
447 1u0j_A DNA replication protein 76.5 1.8 6.2E-05 51.8 4.7 24 365-388 104-127 (267)
448 1via_A Shikimate kinase; struc 76.5 1.2 4.1E-05 49.6 3.1 25 5-29 9-33 (175)
449 2oap_1 GSPE-2, type II secreti 76.3 1 3.5E-05 59.3 2.7 34 772-805 251-284 (511)
450 2ged_A SR-beta, signal recogni 76.2 1.2 4.1E-05 50.0 3.0 23 365-387 48-70 (193)
451 2z0h_A DTMP kinase, thymidylat 76.2 3.1 0.0001 47.0 6.4 44 5-51 5-51 (197)
452 2gj8_A MNME, tRNA modification 76.1 1.2 4E-05 49.5 2.8 21 367-387 6-26 (172)
453 2f6r_A COA synthase, bifunctio 76.0 1.2 4E-05 54.1 3.0 21 367-387 77-97 (281)
454 1m2o_B GTP-binding protein SAR 76.0 1.3 4.4E-05 50.0 3.2 23 365-387 23-45 (190)
455 1wms_A RAB-9, RAB9, RAS-relate 76.0 1.3 4.3E-05 48.9 3.0 22 366-387 8-29 (177)
456 1x79_B RAB GTPase binding effe 75.9 30 0.001 35.6 12.5 40 2102-2141 2-41 (112)
457 1g16_A RAS-related protein SEC 75.9 1.3 4.4E-05 48.4 3.0 22 366-387 4-25 (170)
458 1u8z_A RAS-related protein RAL 75.9 1.3 4.4E-05 48.1 3.0 22 366-387 5-26 (168)
459 1pui_A ENGB, probable GTP-bind 75.7 0.75 2.6E-05 52.6 1.1 22 367-388 28-49 (210)
460 2wjg_A FEOB, ferrous iron tran 75.7 1.2 4.2E-05 49.7 2.8 22 366-387 8-29 (188)
461 1ek0_A Protein (GTP-binding pr 75.6 1.3 4.5E-05 48.2 3.0 22 366-387 4-25 (170)
462 1z0j_A RAB-22, RAS-related pro 75.6 1.3 4.5E-05 48.3 3.0 22 366-387 7-28 (170)
463 3ber_A Probable ATP-dependent 75.6 1.8 6.3E-05 51.3 4.5 48 334-384 52-99 (249)
464 3c8u_A Fructokinase; YP_612366 75.5 1.5 5.1E-05 50.5 3.6 23 1808-1830 25-47 (208)
465 3e1s_A Exodeoxyribonuclease V, 75.5 2 6.9E-05 57.4 5.3 81 7-94 211-314 (574)
466 1ye8_A Protein THEP1, hypothet 75.5 1.6 5.3E-05 49.3 3.6 24 1807-1830 2-25 (178)
467 1zuh_A Shikimate kinase; alpha 75.4 1.2 4.2E-05 49.1 2.7 25 5-29 12-36 (168)
468 2erx_A GTP-binding protein DI- 75.4 1.3 4.4E-05 48.4 2.8 22 366-387 4-25 (172)
469 1c1y_A RAS-related protein RAP 75.4 1.4 4.6E-05 48.0 3.0 22 366-387 4-25 (167)
470 1n0w_A DNA repair protein RAD5 75.3 2.1 7.1E-05 50.1 4.8 44 5-48 29-81 (243)
471 1z08_A RAS-related protein RAB 75.3 1.3 4.6E-05 48.2 3.0 23 365-387 6-28 (170)
472 1ky3_A GTP-binding protein YPT 75.1 1.4 4.7E-05 48.8 3.0 23 365-387 8-30 (182)
473 2z0m_A 337AA long hypothetical 74.7 2.3 7.8E-05 52.2 5.2 49 334-385 3-51 (337)
474 2vli_A Antibiotic resistance p 74.7 2.6 9E-05 46.9 5.3 25 5-29 10-34 (183)
475 2oxc_A Probable ATP-dependent 74.7 2 7E-05 50.0 4.5 49 333-384 32-80 (230)
476 3q72_A GTP-binding protein RAD 74.6 1.3 4.5E-05 48.2 2.6 20 367-386 4-23 (166)
477 3vaa_A Shikimate kinase, SK; s 74.6 1.3 4.6E-05 50.5 2.8 25 5-29 30-54 (199)
478 2nzj_A GTP-binding protein REM 74.6 1.4 4.7E-05 48.5 2.8 22 366-387 5-26 (175)
479 1qhl_A Protein (cell division 74.6 0.63 2.1E-05 54.7 0.0 21 369-389 31-51 (227)
480 2fn4_A P23, RAS-related protei 74.4 1.4 4.9E-05 48.5 3.0 23 366-388 10-32 (181)
481 3tr0_A Guanylate kinase, GMP k 74.4 1.5 5E-05 50.1 3.1 20 1808-1827 10-29 (205)
482 1e9r_A Conjugal transfer prote 74.4 2 6.9E-05 55.4 4.8 36 367-411 55-90 (437)
483 2qag_C Septin-7; cell cycle, c 74.4 1.4 4.6E-05 56.6 3.0 21 367-387 33-53 (418)
484 3q85_A GTP-binding protein REM 74.2 1.4 4.9E-05 48.1 2.8 20 367-386 4-23 (169)
485 1e6c_A Shikimate kinase; phosp 74.1 1.5 5.1E-05 48.5 3.0 25 5-29 7-31 (173)
486 1r2q_A RAS-related protein RAB 74.1 1.5 5.2E-05 47.7 3.0 23 365-387 6-28 (170)
487 3k29_A Putative uncharacterize 74.0 68 0.0023 35.0 15.2 76 2369-2444 83-158 (169)
488 1t6n_A Probable ATP-dependent 74.0 2.5 8.6E-05 48.7 5.0 48 334-385 23-71 (220)
489 3qks_A DNA double-strand break 73.9 1.7 5.6E-05 50.1 3.4 24 367-390 25-48 (203)
490 3zvl_A Bifunctional polynucleo 73.9 1.1 3.8E-05 57.5 2.1 20 368-387 261-280 (416)
491 3a7p_A Autophagy protein 16; c 73.8 26 0.0009 37.7 12.0 52 2341-2392 73-124 (152)
492 1svi_A GTP-binding protein YSX 73.8 1.4 4.9E-05 49.4 2.8 22 366-387 24-45 (195)
493 3qf7_A RAD50; ABC-ATPase, ATPa 73.7 1.6 5.3E-05 55.1 3.4 23 367-389 25-47 (365)
494 3eph_A TRNA isopentenyltransfe 73.7 2 7E-05 54.3 4.3 82 5-95 7-100 (409)
495 3iby_A Ferrous iron transport 73.7 1.9 6.4E-05 51.6 3.9 92 367-458 3-95 (256)
496 1nrj_B SR-beta, signal recogni 73.6 1.5 5.2E-05 50.4 3.0 24 365-388 12-35 (218)
497 3bc1_A RAS-related protein RAB 73.5 1.6 5.4E-05 48.8 3.0 22 366-387 12-33 (195)
498 3d3q_A TRNA delta(2)-isopenten 73.5 1.6 5.6E-05 54.1 3.3 30 5-36 12-41 (340)
499 3eph_A TRNA isopentenyltransfe 73.4 1.6 5.5E-05 55.2 3.3 24 366-389 3-26 (409)
500 1kag_A SKI, shikimate kinase I 73.4 1.6 5.4E-05 48.3 3.0 23 5-27 9-31 (173)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=5.8e-292 Score=3157.42 Aligned_cols=1496 Identities=26% Similarity=0.461 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhh
Q psy12680 1 MGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQ 80 (2567)
Q Consensus 1 lGGap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq 80 (2567)
+||+|+||||||||||||+||++|||+|+||||++++||++|||||+|+||+||||||||||||+++|||||+|||++||
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~ 684 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQ 684 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHHH
Q ss_pred hhhhcCCceEEEc-CeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHHHhhhchHHHHHHHH
Q psy12680 81 RGVTLGEEEILFE-GTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIVKKLAPYKQLYDNCI 159 (2567)
Q Consensus 81 ~a~~~~~~~~~f~-g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L~~~~~~~~Ly~~~~ 159 (2567)
.|++++..+|.|+ |++|+++|+|||||||||||+||+|||||||++||||+|++||+++|+||||++.
T Consensus 685 ~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s~----------- 753 (3245)
T 3vkg_A 685 VALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQ----------- 753 (3245)
T ss_dssp HHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHTT-----------
T ss_pred HHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHHHc-----------
Q ss_pred HHHHHhhhhhhhhhcccChhhhHHHHHHHHHHHHHHhhhccCCCCcchhhhhhhhHHHHhhhcc--------hhhhhccC
Q psy12680 160 EYQEKHKMWAESIVGTFDPEQIEEETNEFYKNIYKLKLQFSHLPGPYGIASKVLDQVQEFKEHM--------PIIQTLGN 231 (2567)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vl~~~~~~k~~~--------~~~~~~~~ 231 (2567)
||.+++.|+.++..+|+.+.++.++|.|||+|+|++++||..|+.+||.. +
T Consensus 754 --------------Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~------- 812 (3245)
T 3vkg_A 754 --------------GFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPIT------- 812 (3245)
T ss_dssp --------------TCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCCC-------------
T ss_pred --------------ccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhhhcccccc-------
Q ss_pred CCcccchhhhhhhccCCCCCc------------hhhhhHHHHHHhhccccccchhhhHHHHhhhhccCcccccccccchh
Q psy12680 232 PGLQLRHWEKISEVVGFPLSP------------EMEDFTLQRIFNYGLEEYVPKFEIWKDIMKTVAADPRVMSVVEIPKL 299 (2567)
Q Consensus 232 ~~~~~r~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (2567)
. ..|+..+.|.+. +.++|||
T Consensus 813 --------------------~~~~~~~~~~~~~~~E~~illralr---d~nlpKl------------------------- 844 (3245)
T 3vkg_A 813 --------------------DAESKTKADQIYCQYEIGVLLNSIN---DTMIPKL------------------------- 844 (3245)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHH---HTTTTTS-------------------------
T ss_pred --------------------cccccccccccccccHHHHHHHHHH---HhccCCC-------------------------
Q ss_pred hhhhhhhccccccccccCCCCCCcCCCCChHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChh
Q psy12680 300 KENLQKCNGLLDMGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKT 379 (2567)
Q Consensus 300 ~~~l~~~~~~~~~~ii~DlFP~~~~~~~~~~~l~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKS 379 (2567)
...|..+|+||++|+|||++.|..+|+.|.++|+++|+++||++++.|+.||+||||++.+|||||||||||||||
T Consensus 845 ----~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKT 920 (3245)
T 3vkg_A 845 ----VADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKT 920 (3245)
T ss_dssp ----CGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHH
T ss_pred ----chhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHH
Q ss_pred HHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHH---hcCCCCceEEEeCC
Q psy12680 380 CAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFA---MSQNENRKWLIFDG 456 (2567)
Q Consensus 380 t~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~---~~~~~~~~WivfDG 456 (2567)
|||++|++|++ ...+.+++.++|||||||++||||++||+|+||+|||||+++|+++ ..+..+++||||||
T Consensus 921 t~~~~L~~al~------~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDG 994 (3245)
T 3vkg_A 921 TSWEVYLEAIE------QVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDG 994 (3245)
T ss_dssp HHHHHHHHHHT------TTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEES
T ss_pred HHHHHHHHHHH------HhhCCCceEEEECCCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECC
Q ss_pred CCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhcCCCC
Q psy12680 457 PVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNTLPPK 536 (2567)
Q Consensus 457 pVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~~~~~ 536 (2567)
||||+|||||||||||||+|||+|||||+|||+|+|||||+||++||||||||||||||+|+++||+|++.+|+++++..
T Consensus 995 pVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL~~ASPATVSRcGmVy~~~~~l~~~~~~~swl~~~~~~ 1074 (3245)
T 3vkg_A 995 DVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDTLSNE 1074 (3245)
T ss_dssp CCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESCCTTCCHHHHHTSEEEECCTTSSCHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEeccccccChhhheeeeEEEEcccccCchHHHHHHHHhCccc
Q ss_pred -----------------cccccccccccccccccccccccccCCCcc--------------------cccchhHHHHHHH
Q psy12680 537 -----------------VSRCGMIYMEPATLGWECLVDSWLNTLPPK--------------------VQEGHRDSLRQLI 579 (2567)
Q Consensus 537 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~l~~l~ 579 (2567)
.... |+....++.....+. ......+.+..+|
T Consensus 1075 ~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1143 (3245)
T 3vkg_A 1075 PFDPQEKEQQKRNENAQLQQQ-----------QQTTITSPILTSPPTTSSSSRSTTSTTSMIPAGLKVQKECAAIISQYF 1143 (3245)
T ss_dssp CSCHHHHHHHHHHHTC---------------------------------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhcccccchhhhc-----------ccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHh
Q ss_pred --HHhhhhHHHHhhccchhhhhhHHHHHHHhhhccccccccccchhHHHHHHHHHHhhcc---ccCCcccccCCCChhhH
Q psy12680 580 --MRFCPTILYFLRRTPFARMVDDAMEAYKKKKREEWEMFPTQDSNLIRSLLNLFDTFLD---DFNDEKYYETHPSLDIR 654 (2567)
Q Consensus 580 --~~~~~~~l~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~sl~~l~~~~l~---~~~~~~~~~~~~~~~~~ 654 (2567)
+.|++++++|++ ++..++|.++.+++.++|+++++++. ..+........+.....
T Consensus 1144 ~~~~~v~~~l~~~~--------------------~~~~i~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 1203 (3245)
T 3vkg_A 1144 EPGGLVHKVLEDAG--------------------QRPHIMDFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQS 1203 (3245)
T ss_dssp STTCHHHHHHHHHH--------------------TSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHH
T ss_pred cccccHHHHHHHHH--------------------hcCcccCccHHHHHHHHHHHHHHHhhhhcccccccccCCCCHHHHH
Q ss_pred HHHHhHHHHHhhhccccccCCCChhhHHHHHHHHhhhcccchhhcccCCCcccCCCCCCCcccccCCCCceeeEEEeeCC
Q psy12680 655 SQLEGIFFFSCIWSMGACLTFETKPHFSNLLYGLMEKEFPASLRESLGLPVELCQPPAKPYLFTVPPQGTVYDYRFIKEG 734 (2567)
Q Consensus 655 ~~~e~~F~fs~iWs~Gg~l~~~~r~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~v~dy~~~~~~ 734 (2567)
.+++++|+||+||||||+++.++|.+||.|+|+.+...+| |+.|+||||+++. +
T Consensus 1204 ~~~~~~f~faliWs~Gg~l~~~~R~~F~~~~~~~~~~~~p-------------------------~~~~~v~Dy~~~~-~ 1257 (3245)
T 3vkg_A 1204 NYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAITPVP-------------------------ANTIPLLDYSVSI-D 1257 (3245)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTCSSCCC-------------------------CTTSCGGGEEECT-T
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhcCCCCC-------------------------CCCCceEEEEEEC-C
Q ss_pred CCccccCccccCCCCCCCCCCCccceeeccchhhhHHHHHHHHHhcCCCeEEecCCCCCccceeehhhhhhccccccccc
Q psy12680 735 KGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSG 814 (2567)
Q Consensus 735 ~~~w~~W~~~~~~~~~~~~~~~~~~~~VpT~dt~r~~~ll~ll~~~~~pvll~G~~GtGKT~~i~~~~~~~~~~~~~~~~ 814 (2567)
.|+|.+|.+.+|++...|...++++++|||+||+|+.++++.++.+++||||+||||||||++++..+.
T Consensus 1258 ~~~w~~W~~~v~~~~~~~~~~~~~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~----------- 1326 (3245)
T 3vkg_A 1258 DANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLR----------- 1326 (3245)
T ss_dssp TCSEEETTCCC---CCCSTTTTCTTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGG-----------
T ss_pred CCeeeehhhcCCccccCCccCCcccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHH-----------
Q ss_pred hhhhhhhhhhhccccchhccccccccchhhHHHHHhhhhhhccccchhhhccccccccccccccccchhhhhhhhccccc
Q psy12680 815 FQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSRLRSGFQHFLLKELSIEQWQ 894 (2567)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (2567)
T Consensus 1327 -------------------------------------------------------------------------------- 1326 (3245)
T 3vkg_A 1327 -------------------------------------------------------------------------------- 1326 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred ccccccccccchhhHHHHHHHhhhcccCcccCCCCCceeEEEeccCCCCcccccCCCChHHHHHHhhhccccccccchhh
Q psy12680 895 PLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVA 974 (2567)
Q Consensus 895 ~~~~~fs~~ts~~~~q~~i~~~lekr~~~~~gp~~~k~~~~fiDD~nmp~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~ 974 (2567)
T Consensus 1327 -------------------------------------------------------------------------------- 1326 (3245)
T 3vkg_A 1327 -------------------------------------------------------------------------------- 1326 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred hhhhhhhhhhccCCCCCCCCcCcccccccceeeeccCCchhhHHHHHHHHhhhcccccccccccccCCCCcccCCchhHH
Q psy12680 975 VKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRHESCKGITSDLFPGIELPETDYT 1054 (2567)
Q Consensus 975 ~~~~~~~~~~a~~p~~~~~~i~~r~~r~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (2567)
T Consensus 1327 -------------------------------------------------------------------------------- 1326 (3245)
T 3vkg_A 1327 -------------------------------------------------------------------------------- 1326 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhhhhhhhhcccccccchhhhhhhHHHHHHHhhhcCCCCCCCCCCCCC
Q psy12680 1055 ILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWSNQGGAPEGPAGTGK 1134 (2567)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (2567)
T Consensus 1327 -------------------------------------------------------------------------------- 1326 (3245)
T 3vkg_A 1327 -------------------------------------------------------------------------------- 1326 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred cccchhHHHHHHHHHhhhccCCccccccccchhhhhHHHHHHHHhhhhhhhhhcCCCceeeeeccceehhhHHHHHhcCC
Q psy12680 1135 TETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMDWPGQTVLCVGSAYWTADVHKAIANHP 1214 (2567)
Q Consensus 1135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~q~vl~~~~i~wt~~v~~~~~~~~ 1214 (2567)
T Consensus 1327 -------------------------------------------------------------------------------- 1326 (3245)
T 3vkg_A 1327 -------------------------------------------------------------------------------- 1326 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred CccchhHHhhHHHHHHHHHHHhcCCCccccccccceEEEEecchhhhhhhccCCCCCCchhhhhhhhceeecCCCccccc
Q psy12680 1215 KGLSHYRDVCNAQINKIVEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVSVPVSDENDFQWLCQLRYYAEGKGRWKPW 1294 (2567)
Q Consensus 1215 ~~l~~~~~~~~~~l~~l~~~~~~~l~~~~r~~~~~li~~~vh~rdi~~~l~~~~~~~~~~f~w~~qlryy~~~~~~w~~w 1294 (2567)
T Consensus 1327 -------------------------------------------------------------------------------- 1326 (3245)
T 3vkg_A 1327 -------------------------------------------------------------------------------- 1326 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred cccCCCCCCCCCCCCCcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhh
Q psy12680 1295 SDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLK 1374 (2567)
Q Consensus 1295 ~~~~~~~~~~~~~~~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~ 1374 (2567)
T Consensus 1327 -------------------------------------------------------------------------------- 1326 (3245)
T 3vkg_A 1327 -------------------------------------------------------------------------------- 1326 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred hhccccccceeeccccccCHHHHHHHHHhhhhccc----CCccCCCC-CcEEEEEEcCCCCccccccCCCChHHHHHHHh
Q psy12680 1375 ELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRR----KGVYGPPL-GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWL 1449 (2567)
Q Consensus 1375 ~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~----~~~~gp~~-gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQli 1449 (2567)
....+..+.+|||++|+|..+|..+++++++|+ |.+|||+. ||++|+|+||+|||.+|+||||||+|+|||++
T Consensus 1327 --~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqll 1404 (3245)
T 3vkg_A 1327 --AFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMV 1404 (3245)
T ss_dssp --GCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHH
T ss_pred --hCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHH
Q ss_pred hcccccccCcceeeeeeeeeeeeecCCCC-CC-CCCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccchh
Q psy12680 1450 DHWMWYDRKDVVAVKLIEIQLMCAMGPPS-TG-NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDP 1527 (2567)
Q Consensus 1450 d~~g~ydr~~~~~~~i~diq~v~am~Ppg-gg-~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~ 1527 (2567)
|+|||||+++..|+.+.|++|+||||||| || ++++|||+|||+++++++|++++|.+||++|+.+++. +.+.+..
T Consensus 1405 d~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~---~~p~l~~ 1481 (3245)
T 3vkg_A 1405 EKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMK---LLPNLRS 1481 (3245)
T ss_dssp HHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTT---SCGGGTT
T ss_pred HcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHh---hChHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhcc-chHHHhcHHHHHHHhhhhhhhhhcccccCchhH
Q psy12680 1528 CIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLS-VPEAIESLLSMKRLWVHEVLRVYYDRLVDSDDR 1606 (2567)
Q Consensus 1528 ~~~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~~-~~~~i~~~~~l~rLw~HE~~RVF~DRLv~~~D~ 1606 (2567)
+++.++++++++|..++..|+|+ +|+||+||||||+||+|||+++ .+....+...++|||+|||+|||+||||+++||
T Consensus 1482 ~~~~lv~ati~ly~~v~~~~lp~-~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr 1560 (3245)
T 3vkg_A 1482 FADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEK 1560 (3245)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTT-TSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-cCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccccccccccCCCCCcCccCccccCCHHHHHHHHHHHHHHHhc
Q psy12680 1607 LWLFNTLKYTVEKFLQEDMNQLFANLKEANSTEPVGEYELRNLIYCDFANPKADQRNYMEVTNLEDLRTIVERYLTEFNN 1686 (2567)
Q Consensus 1607 ~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf~~f~~~~~~~~~Y~~v~d~~~l~~~l~~~l~~yN~ 1686 (2567)
.||.+++...+.++| .... .....++++||||++ +.|++| +.+.++.+++++|++||+
T Consensus 1561 ~~f~~~l~~~~~~~F---------------~~~~-~~~~~~pllf~~f~~-----~~Y~~v-~~~~l~~~l~~~L~~yn~ 1618 (3245)
T 3vkg_A 1561 EWTDKKIDEVALKHF---------------PSVN-LDALKRPILYSNWLT-----KDYQPV-NRSDLREYVKARLKVFYE 1618 (3245)
T ss_dssp HHHHHHHHHHHHHHC---------------TTSC-GGGGCSSCCCCSSCC---------CC-CHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc---------------Ccch-hhhcccCcchhhhcc-----ccCccC-CHHHHHHHHHHHHHHHHh
Q ss_pred cCCCCcccccccccccCCchhHHHHHHhHhHHHHhhhhccCCCCCcccccccchhhHHHHhhhhccccCCCCCCCCCCCc
Q psy12680 1687 MSKKPMNLVLFRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQYLTVTGRVGPGPPENSFSK 1766 (2567)
Q Consensus 1687 ~~~~~m~LVlF~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~h~~f~lr~~~~vl~~~~~~~rv~~~~~~~~~~~ 1766 (2567)
. ..+|+||||+ +++.|++||.||+++|
T Consensus 1619 ~-~~~m~LVlF~---------------------------------------------daleHv~RI~RIL~qp------- 1645 (3245)
T 3vkg_A 1619 E-ELDVPLVLFN---------------------------------------------EVLDHILRIDRVFRQP------- 1645 (3245)
T ss_dssp ------CCCCCH---------------------------------------------HHHHHHHHHHHHHTST-------
T ss_pred c-ccCceEEeHH---------------------------------------------HHHHHHHHHHHHHccC-------
Q ss_pred cchHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhhccccEEEEcCCCCChHHHHHHHHHHHHHHHhhhccCCceEEEE
Q psy12680 1767 TDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEII 1846 (2567)
Q Consensus 1767 ~d~~~l~~al~~~~~~~~l~~~p~~~~ki~ql~~~~~~r~~~lLVG~~GSGK~sl~rlla~~l~~~~~~~~~~~~~v~~~ 1846 (2567)
|||+||||+||||||||+||+|++.++
T Consensus 1646 --------------------------------------~GhaLLVGvgGSGkqSLtrLAa~i~~~--------------- 1672 (3245)
T 3vkg_A 1646 --------------------------------------QGHALLIGVSGGGKSVLSRFVAWMNGL--------------- 1672 (3245)
T ss_dssp --------------------------------------TCCEEEEESTTSSHHHHHHHHHHHTTC---------------
T ss_pred --------------------------------------CCCeEEecCCCCcHHHHHHHHHHHhCC---------------
Q ss_pred EecccccccccccccccccccccccchhHHHHHHHhhhcccCCeEEeecCCcchHHHhhhhhhHHHHHHHHhhhcccccc
Q psy12680 1847 VINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIAL 1926 (2567)
Q Consensus 1847 ~inpk~is~~~~Yg~~~~~~~eW~dGil~~~~r~~~~~~~~~~~~iv~Dg~~d~~wie~ln~~ldD~k~l~l~~Ge~i~~ 1926 (2567)
..++|++++.|| +++|++|+|.++..+| +..
T Consensus 1673 --~vfqi~i~k~Y~---------------------------------------------~~~f~eDLk~l~~~aG--~~~ 1703 (3245)
T 3vkg_A 1673 --SIYTIKVNNNYK---------------------------------------------SSDFDDDLRMLLKRAG--CKE 1703 (3245)
T ss_dssp --EEECCC----CC---------------------------------------------HHHHHHHHHHHHHHHH--TSC
T ss_pred --eeEEEeeeCCCC---------------------------------------------HHHHHHHHHHHHHHHh--cCC
Q ss_pred CCceEEEeccccccccCCccccchhhHhhhhhccCCCccCCCCChhHHHHHHHhhchhhhhhhccCCCcccHHHHhHhhh
Q psy12680 1927 APTTSLIFEPQDLEVASPATITDESMVEDLSNLLNSGEVPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTMMALFKFFV 2006 (2567)
Q Consensus 1927 ~~~~~life~q~L~~aS~a~I~~e~fLE~iN~lL~sGevP~Lf~~dE~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~fv 2006 (2567)
.+++|++ +|++|.+++||||||||||||||||||+.||+++|++.++..++..+.... +..++|+||+
T Consensus 1704 ~~~vFL~---------tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~a~~~g~~~d---t~~~l~~~Fi 1771 (3245)
T 3vkg_A 1704 EKICFIF---------DESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILD---SEEELYKYFT 1771 (3245)
T ss_dssp CCEEEEE---------EGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHHHHHHHHHHHTTCCCC---CHHHHHHHHH
T ss_pred CCEEEEE---------eccccccHHHHHHHHHHhccCCccccCCHHHHHHHHHHHHHHHHhcCCCCC---CHHHHHHHHH
Q ss_pred C--------------------------------------CCCcHHHHHHHHHHhcccCCCCH------------------
Q psy12680 2007 D--------------------------------------TPWPPDALLAVATRFLNEVELSE------------------ 2030 (2567)
Q Consensus 2007 ~--------------------------------------~~Wp~eAL~~VA~~~L~~~~~~~------------------ 2030 (2567)
. ++||+|||.+||++||++++++.
T Consensus 1772 ~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncctIDWf~~Wp~eAL~~Va~~fl~~~~l~~~~~~~~~~~~~~~~~~~~ 1851 (3245)
T 3vkg_A 1772 SQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGN 1851 (3245)
T ss_dssp HHHTTTCCEEEEECTTSTTTTC----CTHHHHHSEEEEEESCCHHHHHHHHHHHTTTSCCCCTTCCCCHHHHHHHHC---
T ss_pred HHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCceeeecCCCCHHHHHHHHHHHHhhcccccccccccccccchhccccc
Q ss_pred -------HHHHHHHhhhhhhhhhhhhhhHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12680 2031 -------AERQISIDMCQNFHVSTQNLSDEFLVKTSRHVYVTPTSYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDK 2103 (2567)
Q Consensus 2031 -------~~~~~~~~~~~~~H~sv~~~s~~~~~~~~r~~yvTP~syL~~l~~f~~ll~~k~~el~~~~~rl~~GL~KL~e 2103 (2567)
..++.++++|+.+|.+|.++|++|+.+.|||+|+||++||+||++|++||.+|++++.++++||++||+||.+
T Consensus 1852 ~~~~~~~~~~~~~~~~~~~iH~sv~~~s~~~~~~~~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1852 NLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy12680 2104 AASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANE 2183 (2567)
Q Consensus 2104 a~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a~~~~~~v~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~~ 2183 (2567)
|+++|++||++|+++||+|++|+++++++|+++++++++| ++.++.++++++++++
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~a------------------------e~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAA------------------------EIKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCChHHHHHHHHHHHHHhcCCCCCcCCCCCCcccCC
Q psy12680 2184 QALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLVEDY 2263 (2567)
Q Consensus 2184 ~~~~~~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~PP~~V~~VmeaVciLlg~~~~~~~~~~~~~~~~~ 2263 (2567)
++++++++|++||+||++|+|+
T Consensus 1988 ~~~ei~~~k~~~e~dL~~A~Pa---------------------------------------------------------- 2009 (3245)
T 3vkg_A 1988 RNKEIAVQKVKAYADLEKAEPT---------------------------------------------------------- 2009 (3245)
T ss_dssp HHHHHHHHHHHHHHCC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhcCCC----------------------------------------------------------
Q ss_pred cHHHHhhhcchhhHhhhhccCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhcchHH
Q psy12680 2264 WGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKE 2343 (2567)
Q Consensus 2264 W~~ak~~L~~~~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~Aa~~Lc~WV~A~~~Y~~V~~~V~Pk~~ 2343 (2567)
+|||+
T Consensus 2010 ---------------------------------------------------------------------------~Pkr~ 2014 (3245)
T 3vkg_A 2010 ---------------------------------------------------------------------------GPLRE 2014 (3245)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred ---------------------------------------------------------------------------ChHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHH
Q psy12680 2344 ALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAK 2423 (2567)
Q Consensus 2344 ~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~ 2423 (2567)
+|++||+++++++++|++++++|++++++|++|+++|+++++||++|+.+++.|+.||+||++||+||++|+.||+++++
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Q ss_pred HHHHHhhcchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhcCCcccCCCccccccCCHHHHHHHHhCCCCCCchhh
Q psy12680 2424 MLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTWVKEVAACNIVCTKDFQLGAVMGNPVEIRAWNIFGLPCDSFSI 2503 (2567)
Q Consensus 2424 ~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~ll~~W~~~l~~~~I~~~~~f~l~~~L~~~~~i~~W~~~GLP~D~~Si 2503 (2567)
.|+.++.+|+||||||||||||+|||+++||+++++.|.+.|++.+||++++|++.++|+||+++++|+.+|||+|++|+
T Consensus 2095 ~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W~~~l~~~~Ip~s~~~~l~~~L~~~~~i~~W~~~GLP~D~lSi 2174 (3245)
T 3vkg_A 2095 NFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCI 2174 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHTCCCCTTCCHHHHTSCHHHHHHHHHTTCCSSHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHcCCHHHHHHHHhCCCCCCchhh
Q ss_pred hhHHHhhcCCCcceeecCchhHHHHHHhhhccCCCeEEECCChhhHHHHHHHHhcCCceeccC
Q psy12680 2504 DNGIIIKNSRRWPLMIDPQEQANKWIKNMEKANGLNVIRLSNTDYMRILEGAIGFGFPAKKLN 2566 (2567)
Q Consensus 2504 ENaiIi~~s~r~PLlIDPq~Qa~~Wik~~~~~~~l~v~~~~~~~f~~~LE~ai~~G~p~~~~~ 2566 (2567)
|||||+++++|||||||||+||++||||++++++|+|++++|++|+++||+|||||+||-.-|
T Consensus 2175 ENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~~~d~~f~~~LE~ai~fG~pvLien 2237 (3245)
T 3vkg_A 2175 ENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCPLLVQD 2237 (3245)
T ss_dssp HHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCCC-----HHHHHHHHHHTCCEECCC
T ss_pred hHHHHHhcCCCceEEEChHHHHHHHHHHHhccCCceEeecCchhHHHHHHHHHHcCCeEEEcc
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=1.5e-242 Score=2640.82 Aligned_cols=1341 Identities=23% Similarity=0.390 Sum_probs=1158.2
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhh
Q psy12680 1 MGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQ 80 (2567)
Q Consensus 1 lGGap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq 80 (2567)
+||+|+||||||||||||+||+++|++|+||||++++|+++||++|+|++++|||+|||||||++++|||++++||.+|+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~ 725 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQ 725 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHHHhhhchHHHHHHHHH
Q psy12680 81 RGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIVKKLAPYKQLYDNCIE 160 (2567)
Q Consensus 81 ~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L~~~~~~~~Ly~~~~~ 160 (2567)
+|++.++.+|.++|++|+++|+|++||||||||+||++||||||++||||+|++||+++|+||+|++.
T Consensus 726 ~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~------------ 793 (2695)
T 4akg_A 726 NGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIM------------ 793 (2695)
T ss_dssp HHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHH------------
T ss_pred HHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHHhc------------
Confidence 99999999999999999999999999999999999999999999999999999999999999998442
Q ss_pred HHHHhhhhhhhhhcccChhhhHHHHHHHHHHHHHHhhhccCCCCcchhhhhhhhHHHHhhhcchhhhhccCCCcccchhh
Q psy12680 161 YQEKHKMWAESIVGTFDPEQIEEETNEFYKNIYKLKLQFSHLPGPYGIASKVLDQVQEFKEHMPIIQTLGNPGLQLRHWE 240 (2567)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vl~~~~~~k~~~~~~~~~~~~~~~~r~~~ 240 (2567)
|+.+++.++.++..+|+.+.++.+.+.||++|+|..+++|..++.+++..+
T Consensus 794 -------------Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~---------------- 844 (2695)
T 4akg_A 794 -------------GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFG---------------- 844 (2695)
T ss_dssp -------------HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSC----------------
T ss_pred -------------CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCC----------------
Confidence 566777888889999999999999999999999999999999988876431
Q ss_pred hhhhccCCCCCchhhhhHHHHHHhhccccccchhhhHHHHhhhhccCcccccccccchhhhhhhhhccccccccccCCCC
Q psy12680 241 KISEVVGFPLSPEMEDFTLQRIFNYGLEEYVPKFEIWKDIMKTVAADPRVMSVVEIPKLKENLQKCNGLLDMGITSDLFP 320 (2567)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~DlFP 320 (2567)
.|+..+.+.+ ...++|++. ..|..+|+++++|+||
T Consensus 845 -------------~e~~~l~~al----------------------------~~~~lpk~~----~~D~~lf~~li~dlFp 879 (2695)
T 4akg_A 845 -------------EGEKTVVESL----------------------------KRVILPSLG----DTDELVFKDELSKIFD 879 (2695)
T ss_dssp -------------SSHHHHHHHH----------------------------HHHTGGGCC----HHHHHHHHHHHHHHCC
T ss_pred -------------cHHHHHHHHH----------------------------HHhccccCc----hhhHHHHHHHHHHhCC
Confidence 0122222222 112344432 3355667899999999
Q ss_pred CCcCCCCChHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCC
Q psy12680 321 GIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGE 400 (2567)
Q Consensus 321 ~~~~~~~~~~~l~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~ 400 (2567)
+++.| .+++.+..+++++|++.||++++.|+.||+||||++.+||||||||||||||||||++|++|++.+. +
T Consensus 880 ~~~~~-~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~------~ 952 (2695)
T 4akg_A 880 SAGTP-LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFD------G 952 (2695)
T ss_dssp CCSCC-SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHT------C
T ss_pred CCCCC-CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhc------C
Confidence 99998 8899999999999999999999999999999999999999999999999999999999999998763 3
Q ss_pred ccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcCC----CCceEEEeCCCCCHHHHHHHHhhhcCCcee
Q psy12680 401 HKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQN----ENRKWLIFDGPVDAIWIENMNSVLDDNKKL 476 (2567)
Q Consensus 401 ~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~----~~~~WivfDGpVDa~WIEnLNSVLDDNK~L 476 (2567)
.++..++|||||+|++||||++|++|+||+||||++++|+++.... +.++||||||||||.|||||||||||||+|
T Consensus 953 ~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L 1032 (2695)
T 4akg_A 953 HANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKIL 1032 (2695)
T ss_dssp CEEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEE
T ss_pred CCceEEEeCCCCCCHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCcc
Confidence 5678899999999999999999999999999999999999886532 348999999999999999999999999999
Q ss_pred EecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEecCCCCchhhhHHhhhhcCCCCcccccccccccccccccccc
Q psy12680 477 CLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNTLPPKVSRCGMIYMEPATLGWECLV 556 (2567)
Q Consensus 477 tL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~~~~~lgw~~~v~sWl~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (2567)
||+|||||+|+++|+|||||+||++||||||||||||||+|+++||+|++++|+++++....+
T Consensus 1033 ~L~ngErI~l~~~~~llFEv~dL~~ASPATVSRcGmvy~~~~~l~~~~~~~~wl~~~~~~~~~----------------- 1095 (2695)
T 4akg_A 1033 TLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSYEALDN----------------- 1095 (2695)
T ss_dssp ECSSSCEEECCSSCEEEEEESCCTTSCHHHHHHSEEEECCSCSSCHHHHHHHHHHHHHHHHHT-----------------
T ss_pred ccCCCCEEecCCCcEEEEEecccccCCccceeeeeEEEecCCcCChHHHHHHHHHhcchhhhh-----------------
Confidence 999999999999999999999999999999999999999999999999999999875422110
Q ss_pred cccccCCCcccccchhHHHHHHHHHhhhh-HHHHhhccchhhhhhHHHHHHHhhhccccccccccchhHHHHHHHHHHhh
Q psy12680 557 DSWLNTLPPKVQEGHRDSLRQLIMRFCPT-ILYFLRRTPFARMVDDAMEAYKKKKREEWEMFPTQDSNLIRSLLNLFDTF 635 (2567)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~l~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~sl~~l~~~~ 635 (2567)
.......+.+..++++++++ ++.++.. ..++...++|.++.+++.++++++.++
T Consensus 1096 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~l~~~~ 1150 (2695)
T 4akg_A 1096 ---------KLSMFELDKLKDLISDSFDMASLTNIFT----------------CSNDLVHILGVRTFNKLETAVQLAVHL 1150 (2695)
T ss_dssp ---------TSCHHHHHHHHHHHHHHCCHHHHHHHHH----------------HHHSSCCSSCCCHHHHHHHHHHHHHHH
T ss_pred ---------hhhhHHHHHHHHHHHHHcCHHHHHHHHH----------------HHhccCccccchHHHHHHHHHHHHHHH
Confidence 00011234555666666543 2444322 123445678899999999999999998
Q ss_pred ccccCCcccccCCCChhhHHHHHhHHHHHhhhccccccCCCChhhHHHHHHHHhhhcccchhhcccCCCcccCCCCCCCc
Q psy12680 636 LDDFNDEKYYETHPSLDIRSQLEGIFFFSCIWSMGACLTFETKPHFSNLLYGLMEKEFPASLRESLGLPVELCQPPAKPY 715 (2567)
Q Consensus 636 l~~~~~~~~~~~~~~~~~~~~~e~~F~fs~iWs~Gg~l~~~~r~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (2567)
+....... ..........+++++|+||++|||||+++.++|.+|+.|+++.+..
T Consensus 1151 ~~~~~~~~--~~~~~~~~~~~~~~~f~f~~iWs~g~~l~~~~R~~f~~~~~~~~~~------------------------ 1204 (2695)
T 4akg_A 1151 ISSYRQWF--QNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTYFGH------------------------ 1204 (2695)
T ss_dssp HHHTCGGG--TSSCHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHSCS------------------------
T ss_pred HHHHHhhh--ccCCchhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc------------------------
Confidence 86543211 1122334556789999999999999999999999999999987531
Q ss_pred ccccCCCCceeeEEEeeCCCCccccCccccCCCCCCCCCCCccceeeccchhhhHHHHHHHHHhcCCCeEEecCCCCCcc
Q psy12680 716 LFTVPPQGTVYDYRFIKEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKS 795 (2567)
Q Consensus 716 ~~~~p~~g~v~dy~~~~~~~~~w~~W~~~~~~~~~~~~~~~~~~~~VpT~dt~r~~~ll~ll~~~~~pvll~G~~GtGKT 795 (2567)
..+ |.+++|||++ +.+.++|.+|.+.++.+...|.+.++++++|||+||+|+.++++.++..++||||+||||||||
T Consensus 1205 -~~~-p~~~~~dy~~-~~~~~~w~~W~~~v~~~~~~~~~~~~~~iiVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT 1281 (2695)
T 4akg_A 1205 -DSQ-ELSDYSTIVI-ANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKT 1281 (2695)
T ss_dssp -SSC-CCCSSCCCBC-CSSSCCCBCCCCCCCCCCCCSGGGSCSSCCCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHH
T ss_pred -cCC-CCCCeeEEEE-ECCCCceeechhcCCCcccCccccCccceeEeccchHHHHHHHHHHHHCCCeEEEECCCCCCHH
Confidence 122 3479999976 4467899999999999988888889999999999999999999999999999999999999999
Q ss_pred ceeehhhhhhccccccccchhhhhhhhhhhccccchhccccccccchhhHHHHHhhhhhhccccchhhhccccccccccc
Q psy12680 796 CYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSR 875 (2567)
Q Consensus 796 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (2567)
++++..+.
T Consensus 1282 ~la~~~l~------------------------------------------------------------------------ 1289 (2695)
T 4akg_A 1282 MIMNNALR------------------------------------------------------------------------ 1289 (2695)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHh------------------------------------------------------------------------
Confidence 65521000
Q ss_pred cccccchhhhhhhhcccccccccccccccchhhHHHHHHHhhhcccCcccCCCCCceeEEEeccCCCCcccccCCCChHH
Q psy12680 876 LRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIE 955 (2567)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~i~~~lekr~~~~~gp~~~k~~~~fiDD~nmp~~~~~g~q~~~e 955 (2567)
T Consensus 1290 -------------------------------------------------------------------------------- 1289 (2695)
T 4akg_A 1290 -------------------------------------------------------------------------------- 1289 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhccccccccchhhhhhhhhhhhhccCCCCCCCCcCcccccccceeeeccCCchhhHHHHHHHHhhhcccccccc
Q psy12680 956 ILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRHESC 1035 (2567)
Q Consensus 956 llrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~~~i~~r~~r~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~ 1035 (2567)
T Consensus 1290 -------------------------------------------------------------------------------- 1289 (2695)
T 4akg_A 1290 -------------------------------------------------------------------------------- 1289 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCcccCCchhHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhhhhhhhhcccccccchhhhhhhHHHHH
Q psy12680 1036 KGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQL 1115 (2567)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1115 (2567)
T Consensus 1290 -------------------------------------------------------------------------------- 1289 (2695)
T 4akg_A 1290 -------------------------------------------------------------------------------- 1289 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCCCCCCCCCCCCcccchhHHHHHHHHHhhhccCCccccccccchhhhhHHHHHHHHhhhhhhhhhcCCCceee
Q psy12680 1116 IEEWSNQGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMDWPGQTVL 1195 (2567)
Q Consensus 1116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~q~vl 1195 (2567)
T Consensus 1290 -------------------------------------------------------------------------------- 1289 (2695)
T 4akg_A 1290 -------------------------------------------------------------------------------- 1289 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccceehhhHHHHHhcCCCccchhHHhhHHHHHHHHHHHhcCCCccccccccceEEEEecchhhhhhhccCCCCCCchh
Q psy12680 1196 CVGSAYWTADVHKAIANHPKGLSHYRDVCNAQINKIVEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVSVPVSDENDF 1275 (2567)
Q Consensus 1196 ~~~~i~wt~~v~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~l~~~~r~~~~~li~~~vh~rdi~~~l~~~~~~~~~~f 1275 (2567)
.
T Consensus 1290 ------------------------------------------~------------------------------------- 1290 (2695)
T 4akg_A 1290 ------------------------------------------N------------------------------------- 1290 (2695)
T ss_dssp ------------------------------------------S-------------------------------------
T ss_pred ------------------------------------------c-------------------------------------
Confidence 0
Q ss_pred hhhhhhceeecCCCccccccccCCCCCCCCCCCCCcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhh
Q psy12680 1276 QWLCQLRYYAEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSI 1355 (2567)
Q Consensus 1276 ~w~~qlryy~~~~~~w~~w~~~~~~~~~~~~~~~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~ 1355 (2567)
T Consensus 1291 -------------------------------------------------------------------------------- 1290 (2695)
T 4akg_A 1291 -------------------------------------------------------------------------------- 1290 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcc---cCCccCCC-CCcEEEEEEcCCCCc
Q psy12680 1356 LFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKR---RKGVYGPP-LGKRCVVFVDDVNMP 1431 (2567)
Q Consensus 1356 ~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr---~~~~~gp~-~gK~~vvFiDDiNmP 1431 (2567)
...+....+|||++|++..+|+.++++++++ +|.+|||+ .||++|+|+||+|||
T Consensus 1291 ----------------------~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp 1348 (2695)
T 4akg_A 1291 ----------------------SSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLP 1348 (2695)
T ss_dssp ----------------------CSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCS
T ss_pred ----------------------CCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccc
Confidence 0001223588999999999999999999854 35578886 899999999999999
Q ss_pred cccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCC-CC-CCCCcchhccccceeccCCCHHHHHHHHH
Q psy12680 1432 LKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPS-TG-NTVTPRFSRHFNQIVINKFDDDTMVTIFS 1509 (2567)
Q Consensus 1432 ~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppg-gg-~~is~Rf~r~f~vi~i~~p~~~sL~~If~ 1509 (2567)
..|+||+|+|+|+|||++|+|||||+.+..|+++.|++++||||||| || +.++|||+|||++++++.|+.+++.+||+
T Consensus 1349 ~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~ 1428 (2695)
T 4akg_A 1349 KLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYE 1428 (2695)
T ss_dssp CCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHH
T ss_pred cccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 55 78999999999999999999999999999
Q ss_pred HHHHhhhcccCCcccchhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCchhHHHHHHHHhccchH-HHhcHHHHHHHh
Q psy12680 1510 KILLWHLDTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLSVPE-AIESLLSMKRLW 1588 (2567)
Q Consensus 1510 ~il~~~l~~~gf~~~v~~~~~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~qGll~~~~~-~i~~~~~l~rLw 1588 (2567)
+++.+++. |..++..+.+.+|++|+++|++++.+|+|+ +|+||+||||||+||+||++++.++ .+.+...++|||
T Consensus 1429 ~il~~~l~---~~~~v~~~~~~lv~ati~~y~~v~~~~~~~-~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw 1504 (2695)
T 4akg_A 1429 IYYKAIFK---LVPEFRSYTEPFARASVHLYNECKARYSTG-LQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLW 1504 (2695)
T ss_dssp HHHHHHTT---SSGGGGGGHHHHHHHHHHHHHHHHHHSCTT-TCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHH
T ss_pred HHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHHHHHcCCc-cCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHH
Confidence 99999983 677899999999999999999999999875 9999999999999999999998665 477899999999
Q ss_pred hhhhhhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccccccccccCCCCCcCccCccccC
Q psy12680 1589 VHEVLRVYYDRLVDSDDRLWLFNTLKYTVEKFLQEDMNQLFANLKEANSTEPVGEYELRNLIYCDFANPKADQRNYMEVT 1668 (2567)
Q Consensus 1589 ~HE~~RVF~DRLv~~~D~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf~~f~~~~~~~~~Y~~v~ 1668 (2567)
+|||+|||+|||++++||.||.+++...+.++|+. ........++++||||+++ .|++|+
T Consensus 1505 ~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~---------------~~~~~~~~~~~~f~df~~~-----~Y~~v~ 1564 (2695)
T 4akg_A 1505 AYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPN---------------QDLGNISSTSLLFSGLLSL-----DFKEVN 1564 (2695)
T ss_dssp HHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCC---------------SCCCCCSTTTCCEESSSSS-----SCEECC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcc---------------cchhhhccCCceeeecCCC-----cceecC
Confidence 99999999999999999999999999888877632 1112234578999999973 599996
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCcccccccccccCCchhHHHHHHhHhHHHHhhhhccCCCCCcccccccchhhHHHHhh
Q psy12680 1669 NLEDLRTIVERYLTEFNNMSKKPMNLVLFRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQY 1748 (2567)
Q Consensus 1669 d~~~l~~~l~~~l~~yN~~~~~~m~LVlF~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~h~~f~lr~~~~vl~~ 1748 (2567)
+ +.+++.++++|++||+. ..+|+||+|+ +++.|
T Consensus 1565 ~-~~l~~~l~~~l~~yn~~-~~~m~LVlF~---------------------------------------------dai~H 1597 (2695)
T 4akg_A 1565 K-TDLVNFIEERFKTFCDE-ELEVPMVIHE---------------------------------------------SMVDH 1597 (2695)
T ss_dssp H-HHHHHHHHHHHHHHHHH-SCCCCCCCCH---------------------------------------------HHHHH
T ss_pred H-HHHHHHHHHHHHHHHhh-cCCceeeeHH---------------------------------------------HHHHH
Confidence 5 78999999999999986 5689999996 23344
Q ss_pred hhccccCCCCCCCCCCCccchHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhhccccEEEEcCCCCChHHHHHHHHHH
Q psy12680 1749 LTVTGRVGPGPPENSFSKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEA 1828 (2567)
Q Consensus 1749 ~~~~~rv~~~~~~~~~~~~d~~~l~~al~~~~~~~~l~~~p~~~~ki~ql~~~~~~r~~~lLVG~~GSGK~sl~rlla~~ 1828 (2567)
++|+.|++++| |||+||||+|||||||++|++|++
T Consensus 1598 i~RI~Ril~~p---------------------------------------------~G~~LLvGvgGsGkqSltrLaa~i 1632 (2695)
T 4akg_A 1598 ILRIDRALKQV---------------------------------------------QGHMMLIGASRTGKTILTRFVAWL 1632 (2695)
T ss_dssp HHHHHHHHHSS---------------------------------------------SEEEEEECTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---------------------------------------------CCCEEEECCCCCcHHHHHHHHHHH
Confidence 44444444443 888999999999999999999987
Q ss_pred HHHHHhhhccCCceEEEEEecccccccccccccccccccccccchhHHHHHHHhhhcccCCeEEeecCCcchHHHhhhhh
Q psy12680 1829 LQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQNENRKWLIFDGPVDAIWIENMNS 1908 (2567)
Q Consensus 1829 l~~~~~~~~~~~~~v~~~~inpk~is~~~~Yg~~~~~~~eW~dGil~~~~r~~~~~~~~~~~~iv~Dg~~d~~wie~ln~ 1908 (2567)
.++ +.++|++++.|| +++
T Consensus 1633 ~~~-----------------~~fqi~~~~~Y~---------------------------------------------~~~ 1650 (2695)
T 4akg_A 1633 NGL-----------------KIVQPKIHRHSN---------------------------------------------LSD 1650 (2695)
T ss_dssp TTC-----------------EEECCCCCTTCC---------------------------------------------HHH
T ss_pred hCC-----------------eeEEEEeeCCCC---------------------------------------------HHH
Confidence 643 446788888885 678
Q ss_pred hHHHHHHHHhhhccccccCCceEEEeccccccccCCccccchhhHhhhhhccCCCccCCCCChhHHHHHHHhhchhhhhh
Q psy12680 1909 VLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATITDESMVEDLSNLLNSGEVPNIFASDEKAEICEKMGVIDRQK 1988 (2567)
Q Consensus 1909 ~ldD~k~l~l~~Ge~i~~~~~~~life~q~L~~aS~a~I~~e~fLE~iN~lL~sGevP~Lf~~dE~~~i~~~~~~~~~~~ 1988 (2567)
|++|+|.++..+| +...+++|++ +|+||++|+||||||||||||||||||+.||+++|++.++..++..
T Consensus 1651 f~eDLk~l~~~aG--~~~~~~vFL~---------tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~~~~~ 1719 (2695)
T 4akg_A 1651 FDMILKKAISDCS--LKESRTCLII---------DESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSL 1719 (2695)
T ss_dssp HHHHHHHHHHHHH--HSCCCEEEEE---------ETTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCCceEEEE---------eccccccHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhHHHHHhc
Confidence 9999999999999 6888999887 4566999999999999999999999999999999999998877765
Q ss_pred hccCCCcccHHHHhHhhhC--------------------------------------CCCcHHHHHHHHHHhcccCCCC-
Q psy12680 1989 DKSMQTDGTMMALFKFFVD--------------------------------------TPWPPDALLAVATRFLNEVELS- 2029 (2567)
Q Consensus 1989 ~~~~~~~~~~~~l~~~fv~--------------------------------------~~Wp~eAL~~VA~~~L~~~~~~- 2029 (2567)
+.. .++.+++|+||+. ++||+|||.+||++||++++++
T Consensus 1720 g~~---~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn~ctIdWf~~Wp~eAL~~Va~~fl~~~~~~~ 1796 (2695)
T 4akg_A 1720 GLL---LDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFNRCIINWMGDWDTKTMSQVANNMVDVIPMEF 1796 (2695)
T ss_dssp TCC---CCSHHHHHHHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHHHSEEEECCSCCHHHHHHHHHHHSCSCCCCC
T ss_pred CCC---CCCHHHHHHHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhcceeEeecCCCCHHHHHHHHHHHhhccCccc
Confidence 542 2477899999984 5899999999999999987643
Q ss_pred ------------------HHHHHHHHhhhhhhhhhhhhhhHHHHHHcCCc-cccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2030 ------------------EAERQISIDMCQNFHVSTQNLSDEFLVKTSRH-VYVTPTSYLELISTFKQLLKVKQEEVLNG 2090 (2567)
Q Consensus 2030 ------------------~~~~~~~~~~~~~~H~sv~~~s~~~~~~~~r~-~yvTP~syL~~l~~f~~ll~~k~~el~~~ 2090 (2567)
...++.++++|+.+|. ++++..+|. +|+||++||++|++|.+++.+|+.+++++
T Consensus 1797 ~~y~tp~s~le~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~~p~~fl~~l~~~~~~~~~k~~~l~~~ 1869 (2695)
T 4akg_A 1797 TDFIVPEVNKELVFTEPIQTIRDAVVNILIHFDR-------NFYQKMKVGVNPRSPGYFIDGLRALVKLVTAKYQDLQEN 1869 (2695)
T ss_dssp CCC----------------CHHHHHHHHHHHHHH-------HHHHHTCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCchHHHHHHhhhhhhHHHHHHHHHHHHHHH-------HHHHHhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235667788888886 466677776 89999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy12680 2091 KNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQALAAQAMKSV 2170 (2567)
Q Consensus 2091 ~~rl~~GL~KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~~a~~~~~~v~~~~~~~~e~~~~~~~~~~~ 2170 (2567)
+++|.+||+||.||+++|++|+++|+
T Consensus 1870 ~~~l~~~l~kL~e~~~~v~~l~~~l~------------------------------------------------------ 1895 (2695)
T 4akg_A 1870 QRFVNVGLEKLNESVLKVNELNKTLS------------------------------------------------------ 1895 (2695)
T ss_dssp HHHHHHHHHHHHHHC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 99999999999999888887765430
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCChHHHHHHHHHHHHHhcCCCC
Q psy12680 2171 AEGVKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSE 2250 (2567)
Q Consensus 2171 ~~~~~~~e~~~~~~~~~~~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~PP~~V~~VmeaVciLlg~~~~ 2250 (2567)
T Consensus 1896 -------------------------------------------------------------------------------- 1895 (2695)
T 4akg_A 1896 -------------------------------------------------------------------------------- 1895 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCcccCCcHHHHhhhcchhhHhhhhccCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHhHhhhHHHHHHHHHHH
Q psy12680 2251 RVPDAGGQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICK 2330 (2567)
Q Consensus 2251 ~~~~~~~~~~~~~W~~ak~~L~~~~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~Aa~~Lc~WV~A~~~ 2330 (2567)
T Consensus 1896 -------------------------------------------------------------------------------- 1895 (2695)
T 4akg_A 1896 -------------------------------------------------------------------------------- 1895 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12680 2331 YDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGK 2410 (2567)
Q Consensus 2331 Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~ 2410 (2567)
++||+|
T Consensus 1896 --------------------------------------------------------------------------~~Li~~ 1901 (2695)
T 4akg_A 1896 --------------------------------------------------------------------------ISLVKS 1901 (2695)
T ss_dssp ------------------------------------------------------------------------------CT
T ss_pred --------------------------------------------------------------------------HHHHHh
Confidence 799999
Q ss_pred hhhhhccHHHHHHHHHHHhhcchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhcCCcccCCCccccccCCHHHHHH
Q psy12680 2411 LGGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTWVKEVAACNIVCTKDFQLGAVMGNPVEIRA 2490 (2567)
Q Consensus 2411 L~~Ek~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~ll~~W~~~l~~~~I~~~~~f~l~~~L~~~~~i~~ 2490 (2567)
|++|+.||++++++++.+..+|+||||||||||+|+|||+++||+++++.|.+.|++.+||++++|++.++|+||+++++
T Consensus 1902 L~~E~~RW~~~~~~~~~~~~~l~Gd~ll~aafisY~G~f~~~~R~~l~~~W~~~~~~~~ip~~~~~~~~~~L~~~~~i~~ 1981 (2695)
T 4akg_A 1902 LTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKRLLGKFAVKYDVNYRFIDYLVTLDEKMK 1981 (2695)
T ss_dssp THHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHTTCCCCSSCCHHHHHCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCchhhhhHHHhhcC-CCcceeecCchhHHHHHHhhhccCCCeEEECCChhhHHHHHHHHhcCCceeccC
Q psy12680 2491 WNIFGLPCDSFSIDNGIIIKNS-RRWPLMIDPQEQANKWIKNMEKANGLNVIRLSNTDYMRILEGAIGFGFPAKKLN 2566 (2567)
Q Consensus 2491 W~~~GLP~D~~SiENaiIi~~s-~r~PLlIDPq~Qa~~Wik~~~~~~~l~v~~~~~~~f~~~LE~ai~~G~p~~~~~ 2566 (2567)
|+.+|||+|++|+|||||+++| +|||||||||+||++||||++ +++|+|++++|++|+++||+|||||+||-.-|
T Consensus 1982 W~~~GLP~D~~s~eNaii~~~s~~r~PL~IDPq~qa~~wik~~~-~~~l~v~~~~d~~f~~~lE~ai~~G~pvLien 2057 (2695)
T 4akg_A 1982 WLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNYY-GNKTVLLSFLEEGFVKRLENAIRFGSVVIIQD 2057 (2695)
T ss_dssp HHHHTCCSCHHHHHHHHHHHHCCSSEEEEECSSTTHHHHHHHHH-GGGEEEECTTSSTHHHHHHHHHHTTCEEEESC
T ss_pred HHhcCCCCCchhHhHHHHHhcccccCceEECcHHHHHHHHHHHh-cCCceEeeCCcHHHHHHHHHHHHcCCeEEEcc
Confidence 9999999999999999999998 999999999999999999996 46799999999999999999999999997543
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=1.9e-64 Score=745.66 Aligned_cols=606 Identities=25% Similarity=0.379 Sum_probs=0.0
Q ss_pred cccccccchhhhhHHHHHHHH------hhhhhhhhhcCCCceeeeeccceehhhHHHHHhcCCCc-------cchhHHhh
Q psy12680 1158 MDYIGLGKFFKMVDDAMEAYK------KKKREEWVMDWPGQTVLCVGSAYWTADVHKAIANHPKG-------LSHYRDVC 1224 (2567)
Q Consensus 1158 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~w~~~~~~q~vl~~~~i~wt~~v~~~~~~~~~~-------l~~~~~~~ 1224 (2567)
++..+..+....+..++.+|. ..+|.+|+..||+|+++++.|++||..++.++...... ++.+.+.+
T Consensus 410 le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wT~~ve~al~~~~~~~~~~~~~l~~~~~~~ 489 (3245)
T 3vkg_A 410 VESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTT 489 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCcccHHHHHHHCcHHHHHHHHHheeHHHHHHHHHhccccccchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhcCCCccccccccceEEEEecchhhhhhhcc-CCCCCCchhhhhhhhceeecCCC----ccccccccCC
Q psy12680 1225 NAQINKIVEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVS-VPVSDENDFQWLCQLRYYAEGKG----RWKPWSDDLA 1299 (2567)
Q Consensus 1225 ~~~l~~l~~~~~~~l~~~~r~~~~~li~~~vh~rdi~~~l~~-~~~~~~~~f~w~~qlryy~~~~~----~w~~w~~~~~ 1299 (2567)
..+|+.++.++++++++..|.+++++|+++||+||++..+++ .++.+.++|+|.+|+||||+.+. .-..-.....
T Consensus 490 ~~~l~~l~~~v~~~l~~~~R~kl~~Lit~~VH~RDvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~ 569 (3245)
T 3vkg_A 490 QMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANA 569 (3245)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTE
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCc
Q ss_pred CCCCCCCCCCCcceeeeCchhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccc
Q psy12680 1300 SAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIE 1379 (2567)
Q Consensus 1300 ~~~~~~~~~~~~~ilVpT~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~ 1379 (2567)
.+.|..++.+....+|.||.|.||+..+...+..+.++.+.||+|||||+++++.-..++.
T Consensus 570 ~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr------------------- 630 (3245)
T 3vkg_A 570 TFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGR------------------- 630 (3245)
T ss_dssp EEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTC-------------------
T ss_pred eecCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCC-------------------
Q ss_pred cccceeeccccccCHHHHHHHHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccC--CCChHHHHHHHhhccccccc
Q psy12680 1380 QWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFG--AQPPIEILRQWLDHWMWYDR 1457 (2567)
Q Consensus 1380 ~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yG--tQ~~ielLRQlid~~g~ydr 1457 (2567)
.++.+|||..++...+-+++-+-+ +.|.+| -+|++|+-..+.-. +|+...+...+.++..-+.-
T Consensus 631 --~~~vfnC~~~~d~~~~g~i~~G~~---~~GaW~---------cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~ 696 (3245)
T 3vkg_A 631 --FVLVFCCDEGFDLQAMSRIFVGLC---QCGAWG---------CFDEFNRLEERILSAVSQQIQTIQVALKENSKEVEL 696 (3245)
T ss_dssp --CEEEEECSSCCCHHHHHHHHHHHH---HHTCEE---------EEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECC
T ss_pred --eEEEEeCCCCCCHHHHHHHHhhHh---hcCcEE---------EehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEe
Q ss_pred C-cceeeeeeeeeeeeecCCCCCC-CCCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHHHHH
Q psy12680 1458 K-DVVAVKLIEIQLMCAMGPPSTG-NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQA 1535 (2567)
Q Consensus 1458 ~-~~~~~~i~diq~v~am~Ppggg-~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~a 1535 (2567)
. .....--.+..++++|||.+.| ..++..+...|..++++.|+.+.+..|- +.+.||.. +..++.-
T Consensus 697 ~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~-------L~s~Gf~~-----a~~La~k 764 (3245)
T 3vkg_A 697 LGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVM-------LYSQGFKT-----AEVLAGK 764 (3245)
T ss_dssp C---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHH-------HHTTTCSC-----HHHHHHH
T ss_pred cCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHH-------HHHcccch-----HHHHHHH
Q ss_pred HHHHHHHHHhhcCCCCCCcccccCchhHHHHHH---HHhccc--------hHHHhcHHHHHHHhhhhhhhhhcccccCch
Q psy12680 1536 TLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQ---GVLLSV--------PEAIESLLSMKRLWVHEVLRVYYDRLVDSD 1604 (2567)
Q Consensus 1536 ti~ly~~v~~~~lPTp~k~HY~FnlRDlsrv~q---Gll~~~--------~~~i~~~~~l~rLw~HE~~RVF~DRLv~~~ 1604 (2567)
.+.+|+-+...+-. +.||+|+||.+..|+. .+.+.. |+.-............|
T Consensus 765 ~~~~~~l~~e~LS~---Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E------------- 828 (3245)
T 3vkg_A 765 IVPLFKLCQEQLSA---QSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYE------------- 828 (3245)
T ss_dssp HHHHHHHHHHSSCC---CTTCCCSHHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCC---CCCCCCChHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccH-------------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccccccccccCCCCCcCccCccccCCHHHHHHHHHHHHHHH
Q psy12680 1605 DRLWLFNTLKYTVEKFLQEDMNQLFANLKEANSTEPVGEYELRNLIYCDFANPKADQRNYMEVTNLEDLRTIVERYLTEF 1684 (2567)
Q Consensus 1605 D~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf~~f~~~~~~~~~Y~~v~d~~~l~~~l~~~l~~y 1684 (2567)
..++...+.+.
T Consensus 829 ---------------------------------------------------------------------~~illralrd~ 839 (3245)
T 3vkg_A 829 ---------------------------------------------------------------------IGVLLNSINDT 839 (3245)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHT
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHh
Q ss_pred hccCCCCcccccccccccCCchhHHHHHHhHhHHHHhhhhccCCCCCcccccccchhhHHHHhhhhccccCCCCCCCCCC
Q psy12680 1685 NNMSKKPMNLVLFRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQYLTVTGRVGPGPPENSF 1764 (2567)
Q Consensus 1685 N~~~~~~m~LVlF~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~h~~f~lr~~~~vl~~~~~~~rv~~~~~~~~~ 1764 (2567)
|... |+..+.++|...+.++|| |..+
T Consensus 840 nlpK----------------------l~~~D~plF~~li~DlFP--------------------------------gv~~ 865 (3245)
T 3vkg_A 840 MIPK----------------------LVADDIPLIQSLLLDVFP--------------------------------GSQL 865 (3245)
T ss_dssp TTTT----------------------SCGGGHHHHHHHHHHHST--------------------------------TCCC
T ss_pred ccCC----------------------CchhhHHHHHHHHHHhCC--------------------------------CCCC
Q ss_pred CccchHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhhccccEEEEcCCCCChHHHHHHHHHHHHHHHhhhccCCceEE
Q psy12680 1765 SKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVE 1844 (2567)
Q Consensus 1765 ~~~d~~~l~~al~~~~~~~~l~~~p~~~~ki~ql~~~~~~r~~~lLVG~~GSGK~sl~rlla~~l~~~~~~~~~~~~~v~ 1844 (2567)
|..+|..|.+|+.++|.+.++++.|.|+.||+|||+++.+|||+||||++|||||+++|.++.+++. +.+.++.
T Consensus 866 ~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~------l~~~~~~ 939 (3245)
T 3vkg_A 866 QPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQ------VDNIKSE 939 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTT------TTTCEEE
T ss_pred CCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHH------hhCCCce
Q ss_pred EEEecccccccccccccccccccccccchhHHHHHHHh---hhcccCCeEEeecCCcchHHHhhhhhhHHHHHHHHhhhc
Q psy12680 1845 IIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFA---MSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSG 1921 (2567)
Q Consensus 1845 ~~~inpk~is~~~~Yg~~~~~~~eW~dGil~~~~r~~~---~~~~~~~~~iv~Dg~~d~~wie~ln~~ldD~k~l~l~~G 1921 (2567)
.+++|||+||++++||.+|+.|+||+||+++.++|++. ......++||+|||||||.||||||+||||||+|||+||
T Consensus 940 ~~~iNPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nG 1019 (3245)
T 3vkg_A 940 AHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNG 1019 (3245)
T ss_dssp EEEECTTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTS
T ss_pred EEEECCCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECCCCCHHHHHHHHHHhcCCCeeecCCC
Q ss_pred cccccCCceEEEeccccccccCCccccchhhH
Q psy12680 1922 EIIALAPTTSLIFEPQDLEVASPATITDESMV 1953 (2567)
Q Consensus 1922 e~i~~~~~~~life~q~L~~aS~a~I~~e~fL 1953 (2567)
|||.++|+++++||++||.+||||||+||||+
T Consensus 1020 ErI~l~~~~~liFEv~dL~~ASPATVSRcGmV 1051 (3245)
T 3vkg_A 1020 ERLALPNNVRVMFEVQDLKYATLATISRCGMV 1051 (3245)
T ss_dssp CCEECCTTEEEEEEESCCTTCCHHHHHTSEEE
T ss_pred CeeecCCCCEEEEEeccccccChhhheeeeEE
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=2.3e-57 Score=671.82 Aligned_cols=577 Identities=20% Similarity=0.318 Sum_probs=438.9
Q ss_pred chhhhhHHHHHHHHh-hhhhhhhhcCCCceeeeeccceehhhHHHHHhcCCCccchhHHhhHHHHHHHHHHHhcCCCccc
Q psy12680 1165 KFFKMVDDAMEAYKK-KKREEWVMDWPGQTVLCVGSAYWTADVHKAIANHPKGLSHYRDVCNAQINKIVEIVRGKLPPQT 1243 (2567)
Q Consensus 1165 ~~~~~~~~~~~~~~~-~~~~~w~~~~~~q~vl~~~~i~wt~~v~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~l~~~~ 1243 (2567)
+....+..++.+|.. .+|.+|+.+||+|+++++.|++||..++.++.... +..+.+....+++.+... .+++++..
T Consensus 474 tl~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wt~~ve~a~~~~~--~~~~~~~~~~~~~~l~~~-~~~~~~~~ 550 (2695)
T 4akg_A 474 SVFTQFRDCLGQIKDGTDIEVVVSKYIFQAILLSAQVMWTELVEKCLQTNQ--FSKYWKEVDMKIKGLLDK-LNKSSDNV 550 (2695)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHH-HHTSCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHChHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHH-hhccCHHH
Confidence 344566777888876 78999999999999999999999999999997532 334455555666666554 45778889
Q ss_pred cccccceEEEEecchhhhhhhccCCCCCCchhhhhhhhceeecCCCc--c--ccccccCCCCCCCCCCCCCcceeeeCch
Q psy12680 1244 RITLGALVVIDVHARDVVVHLVSVPVSDENDFQWLCQLRYYAEGKGR--W--KPWSDDLASAPAIPRDMPVNQIIVTTEE 1319 (2567)
Q Consensus 1244 r~~~~~li~~~vh~rdi~~~l~~~~~~~~~~f~w~~qlryy~~~~~~--w--~~w~~~~~~~~~~~~~~~~~~ilVpT~d 1319 (2567)
|.+++++|+++||+||++..+++.++.+.++|+|.+|+||||+.+.. . ..-......+.|..++.+....+|.|+.
T Consensus 551 r~k~~~li~~~vh~rDvv~~l~~~~v~~~~~f~W~~qlR~y~~~~~~~~~~~~~v~~~~~~~~YgyEYlG~~~rlViTPl 630 (2695)
T 4akg_A 551 KKKIEALLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPL 630 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHSCEEEECSSCSCGGGTEEEEETTEEEECCCCCCCSCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcchHhHHhcceEEEcCccccccceeEEEEcCeEeeccccccCCCCcceecHH
Confidence 99999999999999999999999999999999999999999976531 1 1111122345678899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHH
Q psy12680 1320 TLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQD 1399 (2567)
Q Consensus 1320 T~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~ 1399 (2567)
|.||...+...+..+.|+++.||+|||||+++++. .+.+ ...++.+|||.++++..+..
T Consensus 631 tdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~L------------------A~~l---g~~~v~~nc~e~ld~~~lg~ 689 (2695)
T 4akg_A 631 LLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAF------------------GQNL---GRVVVVFNCDDSFDYQVLSR 689 (2695)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHH------------------HHTT---TCCCEEEETTSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHH------------------HHHh---CCcEEEEECCCCCChhHhhH
Confidence 99999999999999999999999999999988642 2222 23578899999999988876
Q ss_pred HHHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHH--------HhhcccccccCcceeeee-eeeee
Q psy12680 1400 IIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQ--------WLDHWMWYDRKDVVAVKL-IEIQL 1470 (2567)
Q Consensus 1400 ~ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQ--------lid~~g~ydr~~~~~~~i-~diq~ 1470 (2567)
++.+-+.. | ..+.+|++|.-.++ +++.|-| +.+...-+... ...+.+ .+..+
T Consensus 690 ~~~g~~~~----------G--aw~~~DE~nr~~~e------vLs~l~~~l~~i~~al~~~~~~i~~~-g~~i~l~~~~~v 750 (2695)
T 4akg_A 690 LLVGITQI----------G--AWGCFDEFNRLDEK------VLSAVSANIQQIQNGLQVGKSHITLL-EEETPLSPHTAV 750 (2695)
T ss_dssp HHHHHHHH----------T--CEEEEETTTSSCHH------HHHHHHHHHHHHHHHHHHTCSEEECS-SSEEECCTTCEE
T ss_pred HHHHHHhc----------C--CEeeehhhhhcChH------HHHHHHHHHHHHHHHHHcCCcEEeeC-CcEEecCCCceE
Confidence 65443211 2 46678999997765 3444422 22222222211 122233 35778
Q ss_pred eeecCCCCCCC-CCCcchhccccceeccCCCHHHHHHHHHHHHHhhhcccCCcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy12680 1471 MCAMGPPSTGN-TVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIFKESLLNLLP 1549 (2567)
Q Consensus 1471 v~am~Ppggg~-~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~ati~ly~~v~~~~lP 1549 (2567)
+++|||+++|+ .+++-+.+.|..++++.|+.+.+..|.-. +.||.. .+.++...+.+|+.+...+
T Consensus 751 fiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~-------s~Gf~~-----a~~la~kiv~~~~l~~e~l-- 816 (2695)
T 4akg_A 751 FITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ-------IMGFED-----SKSLASKIVHFLELLSSKC-- 816 (2695)
T ss_dssp EEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH-------HHHCSS-----HHHHHHHHHHHHHHHHHHS--
T ss_pred EEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH-------hcCCCc-----hHHHHHHHHHHHHHHHHHh--
Confidence 99999998884 57778899999999999999887777421 234432 2445556667777666544
Q ss_pred CCCCcccccCchhHHHHHHHHhccchHHHhcHHHHHHHhhhhhhhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 1550 TPTKSHYLFNLRDFARVIQGVLLSVPEAIESLLSMKRLWVHEVLRVYYDRLVDSDDRLWLFNTLKYTVEKFLQEDMNQLF 1629 (2567)
Q Consensus 1550 Tp~k~HY~FnlRDlsrv~qGll~~~~~~i~~~~~l~rLw~HE~~RVF~DRLv~~~D~~~f~~~L~~~~~~~~~~~~~~~~ 1629 (2567)
..+.||.|+||.+.+|+.... .+.| .. ..++.
T Consensus 817 -s~q~hydfglRalksvL~~ag-----------~lkr--------~~-----~~e~~----------------------- 848 (2695)
T 4akg_A 817 -SSMNHYHFGLRTLKGVLRNCS-----------PLIS--------EF-----GEGEK----------------------- 848 (2695)
T ss_dssp -CCCTTCCCSHHHHHHHHHHHH-----------HHHH--------HS-----CSSHH-----------------------
T ss_pred -CcCCcccccHHHHHHHHHHHH-----------Hhhc--------cC-----CcHHH-----------------------
Confidence 367899999999988876311 1111 00 01111
Q ss_pred HhhhhcCCCCCcccccccccccccCCCCCcCccCccccCCHHHHHHHHHHHHHHHhccCCCCcccccccccccCCchhHH
Q psy12680 1630 ANLKEANSTEPVGEYELRNLIYCDFANPKADQRNYMEVTNLEDLRTIVERYLTEFNNMSKKPMNLVLFRGFSKEFDPCIE 1709 (2567)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~llf~~f~~~~~~~~~Y~~v~d~~~l~~~l~~~l~~yN~~~~~~m~LVlF~~~~~~~~~~~~ 1709 (2567)
++...+.+.|-..
T Consensus 849 ----------------------------------------------~l~~al~~~~lpk--------------------- 861 (2695)
T 4akg_A 849 ----------------------------------------------TVVESLKRVILPS--------------------- 861 (2695)
T ss_dssp ----------------------------------------------HHHHHHHHHTGGG---------------------
T ss_pred ----------------------------------------------HHHHHHHHhcccc---------------------
Confidence 1112222222110
Q ss_pred HHHHhHhHHHHhhhhccCCCCCcccccccchhhHHHHhhhhccccCCCCCCCCCCCccchHHHHHHHHHHHHHhCCccch
Q psy12680 1710 QLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQYLTVTGRVGPGPPENSFSKTDYTILNKAVREVCEKANLQVTP 1789 (2567)
Q Consensus 1710 ~l~~~~~~i~~~~~~~~~~~~~~~h~~f~lr~~~~vl~~~~~~~rv~~~~~~~~~~~~d~~~l~~al~~~~~~~~l~~~p 1789 (2567)
+...+.++|...+.++|| +...| .+|..+.+++.+.|.+.++++.|
T Consensus 862 -~~~~D~~lf~~li~dlFp--------------------------------~~~~~-~~~~~l~~~i~~~~~~~~l~~~~ 907 (2695)
T 4akg_A 862 -LGDTDELVFKDELSKIFD--------------------------------SAGTP-LNSKAIVQCLKDAGQRSGFSMSE 907 (2695)
T ss_dssp -CCHHHHHHHHHHHHHHCC--------------------------------CCSCC-SSSSHHHHHHHHHHHHHTCCCCH
T ss_pred -CchhhHHHHHHHHHHhCC--------------------------------CCCCC-CChHHHHHHHHHHHHHcCCcccH
Confidence 112233344444444443 22233 56778999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccEEEEcCCCCChHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccccccccccccccccccc
Q psy12680 1790 FFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEW 1869 (2567)
Q Consensus 1790 ~~~~ki~ql~~~~~~r~~~lLVG~~GSGK~sl~rlla~~l~~~~~~~~~~~~~v~~~~inpk~is~~~~Yg~~~~~~~eW 1869 (2567)
.|+.|++|+|+++.+|||+||||++|||||++++.++.+++.+. +..+..+++|||++|++++||.+|+.|++|
T Consensus 908 ~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~------~~~~~~~~inpk~~t~~el~G~~d~~t~eW 981 (2695)
T 4akg_A 908 EFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFD------GHANVVYVIDTKVLTKESLYGSMLKATLEW 981 (2695)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHT------CCEEEEEEECTTTSCHHHHTTEECTTTCCE
T ss_pred HHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhc------CCCceEEEeCCCCCCHHHhcceecCCCCeE
Confidence 99999999999999999999999999999999999999887653 456778899999999999999999999999
Q ss_pred ccchhHHHHHHHhhhc----ccCCeEEeecCCcchHHHhhhhhhHHHHHHHHhhhccccccCCceEEEeccccccccCCc
Q psy12680 1870 SDGILAVSYRQFAMSQ----NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPA 1945 (2567)
Q Consensus 1870 ~dGil~~~~r~~~~~~----~~~~~~iv~Dg~~d~~wie~ln~~ldD~k~l~l~~Ge~i~~~~~~~life~q~L~~aS~a 1945 (2567)
+||+++.++|+..... ...++||+|||++|+.|||+||+||||||+|||++||||.+.|+++++||++||..||||
T Consensus 982 ~DGils~~~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPA 1061 (2695)
T 4akg_A 982 RDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPA 1061 (2695)
T ss_dssp ECCSHHHHHHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHH
T ss_pred ecChHHHHHHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCcc
Confidence 9999999999987542 234899999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhH
Q psy12680 1946 TITDESMV 1953 (2567)
Q Consensus 1946 ~I~~e~fL 1953 (2567)
||+||||+
T Consensus 1062 TVSRcGmv 1069 (2695)
T 4akg_A 1062 TITRCGLL 1069 (2695)
T ss_dssp HHHHSEEE
T ss_pred ceeeeeEE
Confidence 99999964
No 5
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=100.00 E-value=6.7e-38 Score=346.45 Aligned_cols=153 Identities=50% Similarity=0.873 Sum_probs=144.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCChHHHHHHHHHHHHHhcCCCCCcCCC-CCCcccCCcHHHHhhhc
Q psy12680 2194 ECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDA-GGQLVEDYWGPSKKLLG 2272 (2567)
Q Consensus 2194 e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~PP~~V~~VmeaVciLlg~~~~~~~~~-~~~~~~~~W~~ak~~L~ 2272 (2567)
+||++|++|+|+|++|++||++|+++||+|||||++||++|+.||+|||+|+|.++..++++ +|+..+++|+++|++|+
T Consensus 1 ~ae~dL~~A~PaL~~A~~al~~l~k~di~Eiks~~~PP~~V~~vmeaV~iLl~~~~~~~~~~~~g~~~~~~W~~~k~~l~ 80 (155)
T 2rr7_A 1 GSQADLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTASGRMVDDYWEASKKMLM 80 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSSSCCTTHHHHHHHHHTTTTCCCCCEECTTTCSEECCHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCCcHHHHHHHHHHHHHcCCCCcccCCCccccccCCCHHHHHHHhc
Confidence 48899999999999999999999999999999999999999999999999999988765443 46777899999999999
Q ss_pred chhhHhhhhccCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q psy12680 2273 DIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQ 2347 (2567)
Q Consensus 2273 ~~~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~Aa~~Lc~WV~A~~~Y~~V~~~V~Pk~~~l~~ 2347 (2567)
+++|+++|++||+|+|+++++++|+ .|+++|+|+|+.|+++|.||++||+||+||+.|++|+++|+|||++|++
T Consensus 81 ~~~Fl~~L~~fdkd~I~~~~~~~l~-~yl~~p~f~~e~v~~~S~Aa~~Lc~WV~A~~~y~~v~k~V~Pkr~~l~~ 154 (155)
T 2rr7_A 81 EFDFLDSLRKFDKDHIPPEVIVKIR-PFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKEVEPKRQKLRE 154 (155)
T ss_dssp CSSHHHHHHHSCGGGCCHHHHTTST-TTSSCTTSSHHHHHHHCTTTHHHHHHHHHHHHHHHHTTSSSCCCSSSSC
T ss_pred hHHHHHHHHhcCcccChHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 9999999999999999999999996 7999999999999999999999999999999999999999999988764
No 6
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=1.2e-33 Score=367.60 Aligned_cols=173 Identities=22% Similarity=0.423 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccCCCchHHHhhcCCChHHHHHHHHHHHHHhcCCCCCcCCCCCCcc
Q psy12680 2181 ANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLV 2260 (2567)
Q Consensus 2181 ~~~~~~~~~~~k~e~e~~L~~a~P~L~~A~~Al~~L~k~dl~Eirs~~~PP~~V~~VmeaVciLlg~~~~~~~~~~~~~~ 2260 (2567)
.+++++++++.|++|+++|++|+|+|++|++||++|+|+||+|||||++||++|+.||+|||+|+|.++
T Consensus 37 l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~k~di~Elks~~~PP~~V~~vmeaV~iLl~~~~----------- 105 (536)
T 3err_A 37 LHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGEST----------- 105 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCSC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC-----------
Confidence 555667778889999999999999999999999999999999999999999999999999999999753
Q ss_pred cCCcHHHHhhhcchhhHhhhhccCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHhcc
Q psy12680 2261 EDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGP 2340 (2567)
Q Consensus 2261 ~~~W~~ak~~L~~~~Fl~~L~~fDkd~I~~~~~~~l~~~~~~~~~F~~e~v~~aS~Aa~~Lc~WV~A~~~Y~~V~~~V~P 2340 (2567)
++|+++|++|++++|+++|++||+|+||++++++|++.|+++|+|+|+.|+++|+||++||+||+||++|+.+.++|+|
T Consensus 106 -~~W~~ak~~L~~~~Fl~~L~~fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~p 184 (536)
T 3err_A 106 -TDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEP 184 (536)
T ss_dssp -CCHHHHTTGGGCTTHHHHHHHCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHhhccCcHHHHHHHHhcCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhh
Confidence 4699999999999999999999999999999999976799999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2341 KKEALRQAEEKLQLAMSALHEKQEQ 2365 (2567)
Q Consensus 2341 k~~~l~~ae~~l~~a~~~L~~~~~~ 2365 (2567)
++++++++++++.+++++|.++...
T Consensus 185 Lk~eLk~lE~eL~e~e~eL~~lll~ 209 (536)
T 3err_A 185 LRNELQKLEDDAKDNQQKLEALLLQ 209 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999988888777665443
No 7
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.36 E-value=1.1e-12 Score=182.83 Aligned_cols=141 Identities=19% Similarity=0.291 Sum_probs=94.9
Q ss_pred CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHH---------------H
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQD---------------I 1400 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~---------------~ 1400 (2567)
+++|+||+|||||++++... +.+ ....+.+++|..+....+.. .
T Consensus 490 ~~ll~G~~GtGKT~la~~la------------------~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~ 548 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLS------------------KAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL 548 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHH------------------HHH---TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTH
T ss_pred EEEEECCCCCcHHHHHHHHH------------------HHh---cCCEEEEechhhcchhhHhhhcCCCCCCcCccccch
Confidence 58999999999999886422 112 12355677777654311100 0
Q ss_pred HHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC
Q psy12680 1401 IMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG 1480 (2567)
Q Consensus 1401 ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg 1480 (2567)
+...+.+ ....|+|+||++.-.+ .+...|.|++|.|.+.|.. .......++.+++++|++...
T Consensus 549 l~~~~~~----------~~~~vl~lDEi~~~~~------~~~~~Ll~~le~~~~~~~~-g~~~~~~~~~iI~tsN~~~~~ 611 (758)
T 1r6b_X 549 LTDAVIK----------HPHAVLLLDEIEKAHP------DVFNILLQVMDNGTLTDNN-GRKADFRNVVLVMTTNAGVRE 611 (758)
T ss_dssp HHHHHHH----------CSSEEEEEETGGGSCH------HHHHHHHHHHHHSEEEETT-TEEEECTTEEEEEEECSSCC-
T ss_pred HHHHHHh----------CCCcEEEEeCccccCH------HHHHHHHHHhcCcEEEcCC-CCEEecCCeEEEEecCcchhh
Confidence 1111111 1247999999986443 3778999999998888754 344555788999999986421
Q ss_pred ----------------------CCCCcchhccc-cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1481 ----------------------NTVTPRFSRHF-NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1481 ----------------------~~is~Rf~r~f-~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
+.+.|.|.+.| .++.++.++.+.+..|....+..
T Consensus 612 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 612 TERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp ----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 14678888888 66789999999999999887753
No 8
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.16 E-value=7.9e-11 Score=163.92 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=90.9
Q ss_pred CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHH-HHHHhhhhcccCCccC
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQ-DIIMSKLDKRRKGVYG 1414 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q-~~ies~lekr~~~~~g 1414 (2567)
+++|+||+|||||.++++... .+......++.+|+|..+...... ..+-..+.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~------------------~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~------ 578 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE------------------SIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRK------ 578 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH------------------HHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHC------
T ss_pred EEEEECCCCCCHHHHHHHHHH------------------HhcCCCcceEEEechhcccccccccchhhHHHHhC------
Confidence 489999999999998865321 121223456778888776532111 0000111111
Q ss_pred CCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC---------CCCCc
Q psy12680 1415 PPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG---------NTVTP 1485 (2567)
Q Consensus 1415 p~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg---------~~is~ 1485 (2567)
| ..|+|+||++.-. ......|-|+++.|-+.+.. ..-....++.+|+|.|.+... ..+.|
T Consensus 579 ~----~~vl~lDEi~~~~------~~~~~~Ll~~le~g~~~~~~-g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p 647 (758)
T 3pxi_A 579 P----YSVVLLDAIEKAH------PDVFNILLQVLEDGRLTDSK-GRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRP 647 (758)
T ss_dssp S----SSEEEEECGGGSC------HHHHHHHHHHHHHSBCC------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCH
T ss_pred C----CeEEEEeCccccC------HHHHHHHHHHhccCeEEcCC-CCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCH
Confidence 1 2399999986432 34567888899988777632 222344678999999976642 12678
Q ss_pred chhccc-cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1486 RFSRHF-NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1486 Rf~r~f-~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.|...| .++.+++|+.+.+..|....+..
T Consensus 648 ~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 648 EFINRIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp HHHTTSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred HHHhhCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 888888 68889999999999999887654
No 9
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.10 E-value=1.5e-10 Score=162.70 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=52.2
Q ss_pred ceeEEEeccCCC--CcccccCCCChHHHHHHhhhccccccccchhhhhhhhhhhhhccCCCCCC-CCcCcccccccceee
Q psy12680 931 KRCVVFVDDVNM--PLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG-NTVTPRFSRHFNQIV 1007 (2567)
Q Consensus 931 k~~~~fiDD~nm--p~~~~~g~q~~~ellrQ~~~~~~~yd~~~~~~~~~~~~~~~~a~~p~~~~-~~i~~r~~r~f~~~~ 1007 (2567)
++.++||||++. +..+..|.+....+|+++++.|. +.+|+|++++... ..+.+.|.|.|..+.
T Consensus 263 ~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~--------------i~~I~at~~~~~~~~~~d~aL~rRf~~i~ 328 (854)
T 1qvr_A 263 GEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE--------------LRLIGATTLDEYREIEKDPALERRFQPVY 328 (854)
T ss_dssp SSEEEEECCC-------------------HHHHHTTC--------------CCEEEEECHHHHHHHTTCTTTCSCCCCEE
T ss_pred CCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCC--------------eEEEEecCchHHhhhccCHHHHhCCceEE
Confidence 468999999996 45556778888899999997653 4578888766432 346789999999999
Q ss_pred eccCCchhhHHHHHHHHhh
Q psy12680 1008 INKFDDDTMVTIFSKILLW 1026 (2567)
Q Consensus 1008 ~~~~~~~~l~~i~~~~l~~ 1026 (2567)
++.|+.++...|+..++..
T Consensus 329 l~~p~~~e~~~iL~~~~~~ 347 (854)
T 1qvr_A 329 VDEPTVEETISILRGLKEK 347 (854)
T ss_dssp ECCCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHhhhhh
Confidence 9999999999999877653
No 10
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.75 E-value=6e-07 Score=125.15 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=82.8
Q ss_pred CCCCCCCCchhHHHHHHHHh----------cCeEEEEeCCCCcc--------HHHHHHhhhhhhhc-CccccccccccCC
Q psy12680 5 PEGPAGTGKTETTKDLAKAV----------AKLCIVFNCSDSMD--------YIGLGKFFKGLIAT-GAWACFDEFNRID 65 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l----------G~~~~vfNCs~~~d--------~~~m~rif~Gl~q~-GaW~CFDEfNri~ 65 (2567)
..||+|||||..++.||+.+ +..++..+|+.-+. -+.+..+|.-+... ++..++||++.+.
T Consensus 212 L~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~ 291 (758)
T 1r6b_X 212 LVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTII 291 (758)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTT
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHh
Confidence 36999999999999999998 77788888776542 13455566555443 7899999999992
Q ss_pred ------chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeC-CCCCCCCCchhhHhhccccccccCCCHH
Q psy12680 66 ------VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMN-PGYAGRSELPDNLKSLFRTVAMMVPDYA 138 (2567)
Q Consensus 66 ------~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmN-PgYaGRseLPdnLk~lFRpvam~~PD~~ 138 (2567)
.....+ + ..+..++.. ..+-++.+.| |.|.++.++++.|..-|..|.+-.|+..
T Consensus 292 ~~~~~~~~~~~~-~---~~L~~~l~~---------------~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~ 352 (758)
T 1r6b_X 292 GAGAASGGQVDA-A---NLIKPLLSS---------------GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIE 352 (758)
T ss_dssp TSCCSSSCHHHH-H---HHHSSCSSS---------------CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHH
T ss_pred hcCCCCcchHHH-H---HHHHHHHhC---------------CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHH
Confidence 222211 1 112222221 1233455556 4677888888889999999999999998
Q ss_pred HHHHHHH
Q psy12680 139 LISEIIV 145 (2567)
Q Consensus 139 lIaEi~L 145 (2567)
-..+|+-
T Consensus 353 e~~~il~ 359 (758)
T 1r6b_X 353 ETVQIIN 359 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
No 11
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.70 E-value=3.4e-08 Score=123.94 Aligned_cols=131 Identities=23% Similarity=0.256 Sum_probs=104.8
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHH-HHhhh-----------hhhhcCccccccccccCCchhHHHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGL-GKFFK-----------GLIATGAWACFDEFNRIDVEVLSVV 72 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m-~rif~-----------Gl~q~GaW~CFDEfNri~~~vLSvv 72 (2567)
..||+|||||.+++.+|+.+|.+++.++|+..+....+ |.... |.. .+.+.++||+|+++.++++.+
T Consensus 51 l~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l-~~~vl~iDEi~~~~~~~~~~L 129 (331)
T 2r44_A 51 LEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV-FSNFILADEVNRSPAKVQSAL 129 (331)
T ss_dssp EESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT-CSSEEEEETGGGSCHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcc-cccEEEEEccccCCHHHHHHH
Confidence 37999999999999999999999999999877654432 22211 111 136899999999999988877
Q ss_pred HHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCC-CCCCCCCchhhHhhccc-cccccCCCHHHHHHHHH
Q psy12680 73 AQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNP-GYAGRSELPDNLKSLFR-TVAMMVPDYALISEIIV 145 (2567)
Q Consensus 73 aqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNP-gYaGRseLPdnLk~lFR-pvam~~PD~~lIaEi~L 145 (2567)
-+.+.. ..+.+.|..+.+++.+-++.|+|| +|.|+..||+.|..-|. .+.+-.||.....+|+.
T Consensus 130 l~~l~~---------~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~ 195 (331)
T 2r44_A 130 LECMQE---------KQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMR 195 (331)
T ss_dssp HHHHHH---------SEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHH
T ss_pred HHHHhc---------CceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHH
Confidence 654432 246668888999999999999998 57888899999999887 48999999999988865
No 12
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.69 E-value=8.7e-08 Score=134.89 Aligned_cols=151 Identities=12% Similarity=0.167 Sum_probs=79.9
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHH----HHHHHHhhhhccc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQ----TQDIIMSKLDKRR 1409 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~----~q~~ies~lekr~ 1409 (2567)
..+++|+||+|||||++++.....+...... .......++.+++++-+.... +...+..-++.-+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p-----------~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~ 259 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP-----------EGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVV 259 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSC-----------TTSTTCEEEEECC-----------CHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCc-----------hhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHH
Confidence 4579999999999999886532211100000 000134456677766543221 1111111111110
Q ss_pred CCccCCCCCcEEEEEEcCCCC--ccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC-CCCCcc
Q psy12680 1410 KGVYGPPLGKRCVVFVDDVNM--PLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG-NTVTPR 1486 (2567)
Q Consensus 1410 ~~~~gp~~gK~~vvFiDDiNm--P~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg-~~is~R 1486 (2567)
..++.+|+|+||++. +..+..|++....+|+++++.++ +.+++|++++... ..+.+.
T Consensus 260 ------~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~--------------i~~I~at~~~~~~~~~~d~a 319 (854)
T 1qvr_A 260 ------QSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE--------------LRLIGATTLDEYREIEKDPA 319 (854)
T ss_dssp ------TTCSSEEEEECCC-------------------HHHHHTTC--------------CCEEEEECHHHHHHHTTCTT
T ss_pred ------hcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCC--------------eEEEEecCchHHhhhccCHH
Confidence 013458999999996 45556677888889999997643 4578888765432 345788
Q ss_pred hhccccceeccCCCHHHHHHHHHHHHHhh
Q psy12680 1487 FSRHFNQIVINKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1487 f~r~f~vi~i~~p~~~sL~~If~~il~~~ 1515 (2567)
|.|.|.++.++.|+.+....|+..++..+
T Consensus 320 L~rRf~~i~l~~p~~~e~~~iL~~~~~~~ 348 (854)
T 1qvr_A 320 LERRFQPVYVDEPTVEETISILRGLKEKY 348 (854)
T ss_dssp TCSCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_pred HHhCCceEEeCCCCHHHHHHHHHhhhhhh
Confidence 99999999999999999999998877654
No 13
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.56 E-value=8e-07 Score=123.76 Aligned_cols=146 Identities=19% Similarity=0.206 Sum_probs=86.0
Q ss_pred CccChHHHHHHHHHHHHHHhc--------eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcC
Q psy12680 345 LQVTPFFLEKIQQIYEMMIVR--------WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMG 416 (2567)
Q Consensus 345 l~~~~~~i~Kv~QLye~~~~r--------hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~ 416 (2567)
+...+..+..+.+........ ..++++||||+|||++.+.|++++. .. +.+ ...+| +.
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~------~~-~~~--~i~i~-----~s 558 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF------GD-EES--MIRID-----MS 558 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH------SC-TTC--EEEEE-----GG
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc------CC-Ccc--eEEEe-----ch
Confidence 444455555555544443321 1599999999999999999999873 11 122 33444 33
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHhcCCCCceEEEeCC--CCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEE
Q psy12680 417 QLYGQFDAVSHEWSDGILAVSYRQFAMSQNENRKWLIFDG--PVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIF 494 (2567)
Q Consensus 417 eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~WivfDG--pVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llF 494 (2567)
++.+.... ..|.++..+|+. ....|+||- -.++.-...|..+||+++ ++-..|..+. +.++.+|+
T Consensus 559 ~~~~~~~~-----~~~~l~~~~~~~------~~~vl~lDEi~~~~~~~~~~Ll~~le~g~-~~~~~g~~~~-~~~~~iI~ 625 (758)
T 3pxi_A 559 EYMEKHST-----SGGQLTEKVRRK------PYSVVLLDAIEKAHPDVFNILLQVLEDGR-LTDSKGRTVD-FRNTILIM 625 (758)
T ss_dssp GGCSSCCC-----C---CHHHHHHC------SSSEEEEECGGGSCHHHHHHHHHHHHHSB-CC-----CCB-CTTCEEEE
T ss_pred hccccccc-----ccchhhHHHHhC------CCeEEEEeCccccCHHHHHHHHHHhccCe-EEcCCCCEec-cCCeEEEE
Confidence 33332221 167777776652 235899994 567888999999999864 5556665544 46677877
Q ss_pred ecCCc------------CcCCcceeeec-eeEEecC
Q psy12680 495 EPQDL------------EVASPATVSRC-GMIYMEP 517 (2567)
Q Consensus 495 Ev~dL------------~~ASPATVSRc-GmVy~~~ 517 (2567)
=+..- ..-.|+-.+|| -+|+|.|
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~ 661 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHS 661 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC-
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCC
Confidence 55421 12578899999 5666654
No 14
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.36 E-value=7.9e-07 Score=107.82 Aligned_cols=202 Identities=16% Similarity=0.142 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHH
Q psy12680 1322 RNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDII 1401 (2567)
Q Consensus 1322 R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~i 1401 (2567)
+....+..+...+.|++|+||+|||||.+++... +.+......++.+||+..+. +.+
T Consensus 17 ~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~------------------~~~~~~~~~~~~v~~~~~~~-----~~~ 73 (265)
T 2bjv_A 17 EVLEQVSHLAPLDKPVLIIGERGTGKELIASRLH------------------YLSSRWQGPFISLNCAALNE-----NLL 73 (265)
T ss_dssp HHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHH------------------HTSTTTTSCEEEEEGGGSCH-----HHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH------------------HhcCccCCCeEEEecCCCCh-----hHH
Confidence 3344455666788999999999999998886421 12222234567788887652 233
Q ss_pred HhhhhcccCCccCCC---------CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeee
Q psy12680 1402 MSKLDKRRKGVYGPP---------LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMC 1472 (2567)
Q Consensus 1402 es~lekr~~~~~gp~---------~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~ 1472 (2567)
++.+....++.|... .....++|+||++.-.. ...+.|.++++.+.+++.. .....-.++.+|+
T Consensus 74 ~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------~~q~~Ll~~l~~~~~~~~g-~~~~~~~~~~iI~ 146 (265)
T 2bjv_A 74 DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------MVQEKLLRVIEYGELERVG-GSQPLQVNVRLVC 146 (265)
T ss_dssp HHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH------HHHHHHHHHHHHCEECCCC-C--CEECCCEEEE
T ss_pred HHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH------HHHHHHHHHHHhCCeecCC-CcccccCCeEEEE
Confidence 333322222222110 01235899999986443 2456778889887665422 2222335789999
Q ss_pred ecCCCCC----CCCCCcchhccccceeccCCCH----HHHHHHHHHHHHhhhcccCCcc--cchhHHHHHHHHHHHHHHH
Q psy12680 1473 AMGPPST----GNTVTPRFSRHFNQIVINKFDD----DTMVTIFSKILLWHLDTRGFSK--EFDPCIEQLVQATLHIFKE 1542 (2567)
Q Consensus 1473 am~Ppgg----g~~is~Rf~r~f~vi~i~~p~~----~sL~~If~~il~~~l~~~gf~~--~v~~~~~~lv~ati~ly~~ 1542 (2567)
|+|++-. ...+.++|.+.|+.+.+..|+. +.+..+...++...-...+... .+. +.......
T Consensus 147 atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~---~~a~~~L~----- 218 (265)
T 2bjv_A 147 ATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFT---ERARETLL----- 218 (265)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBC---HHHHHHHH-----
T ss_pred ecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcC---HHHHHHHH-----
Confidence 9998632 1346688888887755555544 4555555555443222222211 221 11111110
Q ss_pred HHhhcCCCCCCcccccCchhHHHHHHHHh
Q psy12680 1543 SLLNLLPTPTKSHYLFNLRDFARVIQGVL 1571 (2567)
Q Consensus 1543 v~~~~lPTp~k~HY~FnlRDlsrv~qGll 1571 (2567)
..||-.|+|+|.++++.++
T Consensus 219 ----------~~~~~gn~reL~~~l~~~~ 237 (265)
T 2bjv_A 219 ----------NYRWPGNIRELKNVVERSV 237 (265)
T ss_dssp ----------HSCCTTHHHHHHHHHHHHH
T ss_pred ----------hCCCCCCHHHHHHHHHHHH
Confidence 1367789999999988644
No 15
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.95 E-value=4.8e-06 Score=104.28 Aligned_cols=151 Identities=11% Similarity=0.128 Sum_probs=94.0
Q ss_pred HHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhccc
Q psy12680 1330 LVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRR 1409 (2567)
Q Consensus 1330 ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~ 1409 (2567)
.+..+.|++|+||+|||||++++.. .+.+. .....++|+..+++..+. ........
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la~~l------------------a~~~~---~~~~~i~~~~~~~~~~l~---g~~~~~~~ 97 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSVNTL------------------AKTMD---LDFHRIQFTPDLLPSDLI---GTMIYNQH 97 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHHHHH------------------HHHTT---CCEEEEECCTTCCHHHHH---EEEEEETT
T ss_pred HHHcCCeEEEECCCCCcHHHHHHHH------------------HHHhC---CCeEEEecCCCCChhhcC---CceeecCC
Confidence 3445789999999999999888642 11121 124557777776665432 11111111
Q ss_pred CCcc--CCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeee-eeeeeeeecCCCCC-C-CCCC
Q psy12680 1410 KGVY--GPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKL-IEIQLMCAMGPPST-G-NTVT 1484 (2567)
Q Consensus 1410 ~~~~--gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i-~diq~v~am~Ppgg-g-~~is 1484 (2567)
.+.+ .+..-...|+|+||+|.-.. .....|.+.++.+.+.-. ...... .++.+++++||... | ..++
T Consensus 98 ~~~~~~~~g~l~~~vl~iDEi~~~~~------~~~~~Ll~~l~~~~~~~~--g~~~~~~~~~~viat~np~~~~~~~~l~ 169 (331)
T 2r44_A 98 KGNFEVKKGPVFSNFILADEVNRSPA------KVQSALLECMQEKQVTIG--DTTYPLDNPFLVLATQNPVEQEGTYPLP 169 (331)
T ss_dssp TTEEEEEECTTCSSEEEEETGGGSCH------HHHHHHHHHHHHSEEEET--TEEEECCSSCEEEEEECTTCCSCCCCCC
T ss_pred CCceEeccCcccccEEEEEccccCCH------HHHHHHHHHHhcCceeeC--CEEEECCCCEEEEEecCCCcccCcccCC
Confidence 1111 11111236999999986432 345667778876654321 112222 25678899998763 3 4689
Q ss_pred cchhccccc-eeccCCCHHHHHHHHHHHH
Q psy12680 1485 PRFSRHFNQ-IVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1485 ~Rf~r~f~v-i~i~~p~~~sL~~If~~il 1512 (2567)
+++.+.|.+ +.+++|+.+....|....+
T Consensus 170 ~~l~~Rf~~~i~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 170 EAQVDRFMMKIHLTYLDKESELEVMRRVS 198 (331)
T ss_dssp HHHHTTSSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHhheeEEEEcCCCCHHHHHHHHHhcc
Confidence 999999985 8999999999988887654
No 16
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.94 E-value=7.7e-06 Score=101.26 Aligned_cols=155 Identities=15% Similarity=0.203 Sum_probs=93.9
Q ss_pred CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhh---cccCC
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLD---KRRKG 1411 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~le---kr~~~ 1411 (2567)
.+++|+||+|||||++++... +.+.......+.++++..+........+-.... ...++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 109 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLA------------------ATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGG 109 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHH------------------HHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCC
T ss_pred eEEEEECCCCcCHHHHHHHHH------------------HHHcCCCcceEEeecccccccccHHHhcCCCCccccccccc
Confidence 478999999999999886422 222222334567788877665444433211000 00000
Q ss_pred cc-CCC-CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC----------
Q psy12680 1412 VY-GPP-LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST---------- 1479 (2567)
Q Consensus 1412 ~~-gp~-~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg---------- 1479 (2567)
.+ +.. .+...|+|+||++.-. ......|.++++.+.+.+.. .....+.++.+++++|++..
T Consensus 110 ~~~~~~~~~~~~vl~lDEi~~l~------~~~~~~Ll~~le~~~~~~~~-~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~ 182 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAIEKAH------PDVFNILLQMLDDGRLTDSH-GRTVDFRNTVIIMTSNLGSPLILEGLQKGW 182 (311)
T ss_dssp HHHHHHHHCSSEEEEEETGGGSC------HHHHHHHHHHHHHSEEECTT-SCEEECTTEEEEEEESTTHHHHHTTTTSCC
T ss_pred hHHHHHHhCCCeEEEEeChhhcC------HHHHHHHHHHHhcCEEEcCC-CCEEECCCcEEEEecccCHHHHHhhhcccc
Confidence 00 000 0123699999986432 24567788888887777532 23344456669999998421
Q ss_pred -------------CCCCCcchhccc-cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1480 -------------GNTVTPRFSRHF-NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1480 -------------g~~is~Rf~r~f-~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
...+.|.|.+.| .++.+++|+.+.+..|...++..
T Consensus 183 ~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 183 PYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp CSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 113567788888 46677889999999999877654
No 17
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.92 E-value=5.8e-05 Score=103.35 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc------cCHHHHHHHHHhhhhcc
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ------TSANQTQDIIMSKLDKR 1408 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~------Tts~~~q~~ies~lekr 1408 (2567)
+++||+||+|||||+++++.- +++. ..++.++++.- .+...+..+.+...
T Consensus 239 ~GILL~GPPGTGKT~LAraiA------------------~elg---~~~~~v~~~~l~sk~~gese~~lr~lF~~A~--- 294 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA------------------NETG---AFFFLINGPEIMSKLAGESESNLRKAFEEAE--- 294 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH------------------TTTT---CEEEEEEHHHHHSSCTTHHHHHHHHHHHHHT---
T ss_pred CeEEEECCCCCCHHHHHHHHH------------------HHhC---CeEEEEEhHHhhcccchHHHHHHHHHHHHHH---
Confidence 679999999999999887521 1111 12333443321 11223333322211
Q ss_pred cCCccCCCCCcEEEEEEcCCCCccc--cccCCCChHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCCCCCCc
Q psy12680 1409 RKGVYGPPLGKRCVVFVDDVNMPLK--EEFGAQPPIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTP 1485 (2567)
Q Consensus 1409 ~~~~~gp~~gK~~vvFiDDiNmP~~--d~yGtQ~~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~ 1485 (2567)
....||+|+||+..-.+ +.-+.+.--.++-|++.. .|+-.+ .++-+++|.|-|. .++|
T Consensus 295 --------~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~--------~~V~VIaaTN~~d---~LD~ 355 (806)
T 3cf2_A 295 --------KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--------AHVIVMAATNRPN---SIDP 355 (806)
T ss_dssp --------TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG--------GCEEEEEECSSTT---TSCT
T ss_pred --------HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc--------CCEEEEEecCChh---hcCH
Confidence 12348999999875433 332233323334444321 111111 2466788888764 3555
Q ss_pred chhc--cc-cceeccCCCHHHHHHHHHHHH
Q psy12680 1486 RFSR--HF-NQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1486 Rf~r--~f-~vi~i~~p~~~sL~~If~~il 1512 (2567)
.+.| .| ..+.++.|+.+.-..|+..++
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 5554 23 357889999999888887544
No 18
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.87 E-value=3.5e-05 Score=95.34 Aligned_cols=161 Identities=13% Similarity=0.130 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHH
Q psy12680 1323 NIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIM 1402 (2567)
Q Consensus 1323 ~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ie 1402 (2567)
....+..+...+.|++++||+|||||.+++... ...+.....++.+||++.+. +.++
T Consensus 14 ~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~------------------~~~~~~~~~~v~v~~~~~~~-----~l~~ 70 (304)
T 1ojl_A 14 LLNEIAMVAPSDATVLIHGDSGTGKELVARALH------------------ACSARSDRPLVTLNCAALNE-----SLLE 70 (304)
T ss_dssp HHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHH------------------HHSSCSSSCCCEEECSSCCH-----HHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCchHHHHHHHHH------------------HhCcccCCCeEEEeCCCCCh-----HHHH
Confidence 334445555678999999999999998886421 11222334567889987653 3455
Q ss_pred hhhhcccCCccCCCC---------CcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeee
Q psy12680 1403 SKLDKRRKGVYGPPL---------GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCA 1473 (2567)
Q Consensus 1403 s~lekr~~~~~gp~~---------gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~a 1473 (2567)
+.+-...++.|.... ....++|+||++.-..+ ....|-++++.+.+. +.......-.++.+|+|
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~riI~a 143 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPL------MQVRLLRAIQEREVQ-RVGSNQTISVDVRLIAA 143 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH------HHHHHHHHHHSSBCC-BTTBCCCCBCCCEEEEE
T ss_pred HHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHH------HHHHHHHHHhcCEee-ecCCcccccCCeEEEEe
Confidence 555443333332111 11258999999854332 233444556655443 22222222357889999
Q ss_pred cCCCCC----CCCCCcchhccccceeccCCC----HHHHHHHHHHHHH
Q psy12680 1474 MGPPST----GNTVTPRFSRHFNQIVINKFD----DDTMVTIFSKILL 1513 (2567)
Q Consensus 1474 m~Ppgg----g~~is~Rf~r~f~vi~i~~p~----~~sL~~If~~il~ 1513 (2567)
+|++-. .....+++...|+++.+..|+ .+.+..+...++.
T Consensus 144 tn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 144 THRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp ESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred cCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 998621 124567888888887766665 3455556555554
No 19
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.81 E-value=4.3e-05 Score=88.82 Aligned_cols=143 Identities=14% Similarity=0.136 Sum_probs=93.5
Q ss_pred HHHHHhcC--CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhcc--ccccceeeccccccCHHHHHHHHH
Q psy12680 1327 MKLLVTHQ--KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSI--EQWQPLIMNFSAQTSANQTQDIIM 1402 (2567)
Q Consensus 1327 l~~ll~~~--~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~--~~~~~~~lnfSa~Tts~~~q~~ie 1402 (2567)
+..++..+ .+++++||+|||||++++.... .+.. .....+.++++.......+...+.
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALAR------------------DLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp HHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH------------------HHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH------------------HHhccccccceEEeccccccChHHHHHHHH
Confidence 34445544 3599999999999988864221 1111 122355677777776666666555
Q ss_pred hhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCC
Q psy12680 1403 SKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNT 1482 (2567)
Q Consensus 1403 s~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~ 1482 (2567)
...... +...++..++++||++.-..+ ..+.|+++++... .++.++++++.+ ..
T Consensus 91 ~~~~~~-----~~~~~~~~vliiDe~~~l~~~------~~~~l~~~l~~~~------------~~~~~i~~~~~~---~~ 144 (226)
T 2chg_A 91 EFARTA-----PIGGAPFKIIFLDEADALTAD------AQAALRRTMEMYS------------KSCRFILSCNYV---SR 144 (226)
T ss_dssp HHHTSC-----CSTTCSCEEEEEETGGGSCHH------HHHHHHHHHHHTT------------TTEEEEEEESCG---GG
T ss_pred HHhccc-----CCCccCceEEEEeChhhcCHH------HHHHHHHHHHhcC------------CCCeEEEEeCCh---hh
Confidence 443321 122467789999998764332 3566777776521 135567777765 34
Q ss_pred CCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1483 VTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1483 is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+.+++.+.|.++.++.|+.+.+..++..++.
T Consensus 145 ~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 145 IIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHhCceeecCCCCHHHHHHHHHHHHH
Confidence 6788888899999999999999988887654
No 20
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.80 E-value=5.8e-05 Score=93.16 Aligned_cols=137 Identities=17% Similarity=0.146 Sum_probs=86.3
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccH--------HHHHHhhhhh------hhcCccccccccccCCchh---
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY--------IGLGKFFKGL------IATGAWACFDEFNRIDVEV--- 68 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~--------~~m~rif~Gl------~q~GaW~CFDEfNri~~~v--- 68 (2567)
.||+|||||++++.+|+.+|.+++.+||++-.+. ..+..++... +..+.-.++||++++..+.
T Consensus 56 ~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~ 135 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS 135 (310)
T ss_dssp ECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc
Confidence 6999999999999999999999999999976542 2233443321 2347789999999999775
Q ss_pred -HHHHHHHH-HhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHHH
Q psy12680 69 -LSVVAQQI-LTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 69 -LSvvaqqi-~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~L 145 (2567)
.....+.+ ..+...+.. ..+.+....+ -...+-+..|.|++......+++.|..-| ..|.+-.|+..-+.+|+-
T Consensus 136 ~~~~~~~~~~~~Ll~~le~--~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 136 GADVSREGVQRDLLPLVEG--STVSTKHGMV-KTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 212 (310)
T ss_dssp SSHHHHHHHHHHHHHHHHC--CEEEETTEEE-ECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcC--CeEecccccc-cCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHH
Confidence 11111111 111112221 2333333222 22344455555555445567888888888 458888899888877753
No 21
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.77 E-value=3.9e-05 Score=105.01 Aligned_cols=122 Identities=27% Similarity=0.355 Sum_probs=79.0
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhh-hhcCccccccccccCCc-------hhHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGL-IATGAWACFDEFNRIDV-------EVLS 70 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl-~q~GaW~CFDEfNri~~-------~vLS 70 (2567)
.+||+|||||..+|.+|+.+|.+++..+|++-++ -+.+..+|.-. ..+.|=.+|||+.-|-. ++-.
T Consensus 243 L~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~ 322 (806)
T 3cf2_A 243 LYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322 (806)
T ss_dssp EECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHH
Confidence 4799999999999999999999999999987443 23455556543 24578889999998743 2333
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--cc-ccccccCCCHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lF-Rpvam~~PD~~lIaEi~ 144 (2567)
-+..|+.+..+.+.... ++-|..|-|- -..|++.|+. .| |.|.+-.||..-=.+|+
T Consensus 323 riv~~LL~~mdg~~~~~--------------~V~VIaaTN~----~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL 381 (806)
T 3cf2_A 323 RIVSQLLTLMDGLKQRA--------------HVIVMAATNR----PNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp HHHHHHHTHHHHCCGGG--------------CEEEEEECSS----TTTSCTTTTSTTSSCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccC--------------CEEEEEecCC----hhhcCHHHhCCcccceEEecCCCCHHHHHHHH
Confidence 34444444434433221 1223334341 1247777765 23 56999999987666653
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.76 E-value=1.9e-06 Score=97.85 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=81.8
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccC----HHHHHHHHHhhhhccc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTS----ANQTQDIIMSKLDKRR 1409 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tt----s~~~q~~ies~lekr~ 1409 (2567)
+.+++|+||+|||||++++.....+..... . ........+.++++.... .......+...++.-.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEV-P----------EGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA 111 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCS-C----------GGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCC-c----------hhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHh
Confidence 467999999999999988653322111000 0 000122334455443321 1222222222222100
Q ss_pred CCccCCCCCcEEEEEEcCCCCcc--ccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC--CCCCc
Q psy12680 1410 KGVYGPPLGKRCVVFVDDVNMPL--KEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTP 1485 (2567)
Q Consensus 1410 ~~~~gp~~gK~~vvFiDDiNmP~--~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg--~~is~ 1485 (2567)
..++.+|+|+||++.-. ....+.+....+|+++++.+ ++.++++++++... ..+.+
T Consensus 112 ------~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~i~~~~~~~~~~~~~~~~ 171 (195)
T 1jbk_A 112 ------KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLDEYRQYIEKDA 171 (195)
T ss_dssp ------HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--------------SCCEEEEECHHHHHHHTTTCH
T ss_pred ------hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--------------CeEEEEeCCHHHHHHHHhcCH
Confidence 12345899999997532 22344677788999988753 35578887765422 34678
Q ss_pred chhccccceeccCCCHHHHHHH
Q psy12680 1486 RFSRHFNQIVINKFDDDTMVTI 1507 (2567)
Q Consensus 1486 Rf~r~f~vi~i~~p~~~sL~~I 1507 (2567)
++.+.|..+.++.|+.+....|
T Consensus 172 ~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 172 ALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp HHHTTEEEEECCCCCHHHHHTT
T ss_pred HHHHHhceeecCCCCHHHHHHH
Confidence 9999999999999999887655
No 23
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.72 E-value=2.5e-05 Score=104.20 Aligned_cols=199 Identities=13% Similarity=0.165 Sum_probs=101.3
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHH---hhhhccc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIM---SKLDKRR 1409 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ie---s~lekr~ 1409 (2567)
.+.+++|+||+|||||++++.... .+. .....++++............. +....+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~------------------~l~---~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK------------------SLG---RKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH------------------HHT---CEEEEECCCC--------------------CH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH------------------hcC---CCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 366899999999999998864321 111 1234566665433211111000 0000000
Q ss_pred CCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcc---cccccCcceeeeeeeeeeeeecCCCCCCCCCCcc
Q psy12680 1410 KGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHW---MWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPR 1486 (2567)
Q Consensus 1410 ~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~---g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~R 1486 (2567)
...+.......-|+|+|++..-..+.-|. +...|.+.+|.+ .|.+.....-....++.+++|+|++. .++|.
T Consensus 166 ~~~~~~a~~~~~vl~lDEid~l~~~~~~~--~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~---~l~~a 240 (543)
T 3m6a_A 166 IQGMKKAGKLNPVFLLDEIDKMSSDFRGD--PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA---TIPGP 240 (543)
T ss_dssp HHHHHTTCSSSEEEEEEESSSCC-----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT---TSCHH
T ss_pred HHHHHHhhccCCEEEEhhhhhhhhhhccC--HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc---cCCHH
Confidence 00111122233499999988655443221 333444555432 22222111223346788999999875 57889
Q ss_pred hhccccceeccCCCHHHHHHHHHHHHHh-hhcccCCcc-cchhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCchhHH
Q psy12680 1487 FSRHFNQIVINKFDDDTMVTIFSKILLW-HLDTRGFSK-EFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFA 1564 (2567)
Q Consensus 1487 f~r~f~vi~i~~p~~~sL~~If~~il~~-~l~~~gf~~-~v~~~~~~lv~ati~ly~~v~~~~lPTp~k~HY~FnlRDls 1564 (2567)
|.+.|.++.++.|+.+....|+...+.. .....+... .+ .+.+..+...+.-| ....|.|+|.
T Consensus 241 L~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i-~i~~~~l~~l~~~~--------------~~~~~vR~L~ 305 (543)
T 3m6a_A 241 LRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNL-QLRDQAILDIIRYY--------------TREAGVRSLE 305 (543)
T ss_dssp HHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGC-EECHHHHHHHHHHH--------------CCCSSSHHHH
T ss_pred HHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHHHHhC--------------ChhhchhHHH
Confidence 9999999999999999999998875532 222233322 11 11122222222222 1226999999
Q ss_pred HHHHHHhc
Q psy12680 1565 RVIQGVLL 1572 (2567)
Q Consensus 1565 rv~qGll~ 1572 (2567)
+.++.++.
T Consensus 306 ~~i~~~~~ 313 (543)
T 3m6a_A 306 RQLAAICR 313 (543)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887664
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.70 E-value=0.00015 Score=101.09 Aligned_cols=122 Identities=27% Similarity=0.349 Sum_probs=83.1
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhh-hcCccccccccccCCc-------hhHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLI-ATGAWACFDEFNRIDV-------EVLS 70 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~-q~GaW~CFDEfNri~~-------~vLS 70 (2567)
..||+|||||.+++.+|..+|.+++.+||++-++ ...++.+|.... +..+...+||++.+.. ++..
T Consensus 243 L~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 322 (806)
T 1ypw_A 243 LYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322 (806)
T ss_dssp ECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHH
T ss_pred EECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHH
Confidence 4799999999999999999999999999976543 234566666543 3467889999977653 3333
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--cc-ccccccCCCHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lF-Rpvam~~PD~~lIaEi~ 144 (2567)
.+..++.......+.+ ..+.+..|.|+- ..|++.|+. -| +.+.+-.||..--.+++
T Consensus 323 ~~~~~Ll~ll~g~~~~--------------~~v~vI~atn~~----~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 323 RIVSQLLTLMDGLKQR--------------AHVIVMAATNRP----NSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp HHHHHHHHHHHSSCTT--------------SCCEEEEECSCT----TTSCTTTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhhccc--------------ccEEEecccCCc----hhcCHHHhcccccccccccCCCCHHHHHHHH
Confidence 4444444433333221 344566777864 356666665 34 56889999988777764
No 25
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.68 E-value=7.6e-05 Score=94.96 Aligned_cols=155 Identities=14% Similarity=0.200 Sum_probs=95.5
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccc------cccceeeccccccCHHHHHHHHHhhhh
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIE------QWQPLIMNFSAQTSANQTQDIIMSKLD 1406 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~------~~~~~~lnfSa~Tts~~~q~~ies~le 1406 (2567)
.+.+++++||+|||||++++... +.+... .+.++.+|++..+++..+...+...+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~ 104 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVL------------------RRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVG 104 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHH------------------HHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCCCHHHHHHHHH------------------HHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhC
Confidence 45689999999999999886432 222111 456778888888777665555444432
Q ss_pred ccc---C----Ccc------CCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeee
Q psy12680 1407 KRR---K----GVY------GPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCA 1473 (2567)
Q Consensus 1407 kr~---~----~~~------gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~a 1473 (2567)
... + ..+ -...++.+|+|+||++.-.... ...+.|.++++...-+. .-.++.++++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----~~~~~l~~l~~~~~~~~-------~~~~~~~I~~ 173 (387)
T 2v1u_A 105 VRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----GGQDLLYRITRINQELG-------DRVWVSLVGI 173 (387)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----THHHHHHHHHHGGGCC------------CEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----CCChHHHhHhhchhhcC-------CCceEEEEEE
Confidence 210 0 000 0124678999999997543221 12345555554211110 0135678888
Q ss_pred cCCCCCCCCCCcchhccc--cceeccCCCHHHHHHHHHHHHHhhh
Q psy12680 1474 MGPPSTGNTVTPRFSRHF--NQIVINKFDDDTMVTIFSKILLWHL 1516 (2567)
Q Consensus 1474 m~Ppggg~~is~Rf~r~f--~vi~i~~p~~~sL~~If~~il~~~l 1516 (2567)
.+.+.-...+.+++.+.| ..+.++.++.+.+..|+...+...+
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~ 218 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAF 218 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHB
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhc
Confidence 887644346788888888 5688999999999999998776433
No 26
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.67 E-value=0.00012 Score=85.14 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=87.4
Q ss_pred CCCCCCCchhHHHHHHHHh-----cCeEEEEeCCCCccHHHHHHhhhhhhh-------cCccccccccccCCchhHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAV-----AKLCIVFNCSDSMDYIGLGKFFKGLIA-------TGAWACFDEFNRIDVEVLSVVA 73 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-----G~~~~vfNCs~~~d~~~m~rif~Gl~q-------~GaW~CFDEfNri~~~vLSvva 73 (2567)
.||+|||||.+++.+++.+ +..++.++|++..+...+.+.+..... .+...++||+++++.+.+..+.
T Consensus 44 ~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~ 123 (226)
T 2chg_A 44 SGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALR 123 (226)
T ss_dssp ECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHH
Confidence 6999999999999999987 466899999998888777776666543 3567899999999988766655
Q ss_pred HHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 74 QQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 74 qqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+.+... .+++-+.+|.|.. ..+++.|+.-|..+.+-.|+..-+.+++.
T Consensus 124 ~~l~~~--------------------~~~~~~i~~~~~~----~~~~~~l~~r~~~i~~~~~~~~~~~~~l~ 171 (226)
T 2chg_A 124 RTMEMY--------------------SKSCRFILSCNYV----SRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171 (226)
T ss_dssp HHHHHT--------------------TTTEEEEEEESCG----GGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HHHHhc--------------------CCCCeEEEEeCCh----hhcCHHHHHhCceeecCCCCHHHHHHHHH
Confidence 544321 1244566677753 35778888888888888899887776643
No 27
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.64 E-value=6.7e-05 Score=92.56 Aligned_cols=148 Identities=15% Similarity=0.181 Sum_probs=88.2
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccC--------HHHHHHHHHhh
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTS--------ANQTQDIIMSK 1404 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tt--------s~~~q~~ies~ 1404 (2567)
...+++|+||+|||||++++.... .+. ...+.++++..+. ...+.++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~------------------~l~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK------------------LAN---APFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH------------------HHT---CCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH------------------HhC---CCEEEEcchhcccCCccCccHHHHHHHHHHHh
Confidence 367899999999999998864321 111 1234455554432 22333333221
Q ss_pred hhcccCCccCCCCCcEEEEEEcCCCCccccccCCCC------hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCC
Q psy12680 1405 LDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQP------PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPS 1478 (2567)
Q Consensus 1405 lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~------~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppg 1478 (2567)
. +.+.. .++..|+|+||++.-..+..+... ....|.++++.+.++.+.. ...-.++.++++.++..
T Consensus 108 ----~-~~~~~-~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~--~~~~~~~~~i~~~~~~~ 179 (310)
T 1ofh_A 108 ----G-GAIDA-VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG--MVKTDHILFIASGAFQV 179 (310)
T ss_dssp ----T-TCHHH-HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE--EEECTTCEEEEEECCSS
T ss_pred ----h-HHHhh-ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc--cccCCcEEEEEcCCccc
Confidence 0 00000 123579999999875554432222 1445666777665554322 22334677888866533
Q ss_pred CC-CCCCcchhcccc-ceeccCCCHHHHHHHHH
Q psy12680 1479 TG-NTVTPRFSRHFN-QIVINKFDDDTMVTIFS 1509 (2567)
Q Consensus 1479 gg-~~is~Rf~r~f~-vi~i~~p~~~sL~~If~ 1509 (2567)
.. ..+.|++.+.|. ++.++.|+.+.+..|..
T Consensus 180 ~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 180 ARPSDLIPELQGRLPIRVELTALSAADFERILT 212 (310)
T ss_dssp SCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred CCcccCCHHHHhhCCceEEcCCcCHHHHHHHHH
Confidence 33 457889999996 48899999999999887
No 28
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.64 E-value=2e-05 Score=105.94 Aligned_cols=113 Identities=21% Similarity=0.306 Sum_probs=79.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeC----CCCccHHHHHHhhhhh--------h-hcCccccccccccCCchhHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNC----SDSMDYIGLGKFFKGL--------I-ATGAWACFDEFNRIDVEVLSVV 72 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNC----s~~~d~~~m~rif~Gl--------~-q~GaW~CFDEfNri~~~vLSvv 72 (2567)
.||+|||||..+|.+|+.+++..+.+.+ ++ +....+...+.|. . ..|..+|+|||++++.++.+.+
T Consensus 333 ~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~-l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~L 411 (595)
T 3f9v_A 333 IGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAG-LTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAI 411 (595)
T ss_dssp EESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTT-SEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHH
T ss_pred ECCCchHHHHHHHHHHHhCCCceecCCCcccccc-ccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhh
Confidence 5999999999999999999998776432 22 1111111122221 1 1267899999999999987765
Q ss_pred HHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCC----------CchhhHhhcc
Q psy12680 73 AQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRS----------ELPDNLKSLF 127 (2567)
Q Consensus 73 aqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRs----------eLPdnLk~lF 127 (2567)
-+-+ ..+.-.+.-.|....++..+.++.|+||.+ |+. .||+.|..=|
T Consensus 412 l~~l-------e~~~i~i~~~g~~~~~~~~~~vIaatNp~~-G~~~~~~~~~~ni~l~~aLl~RF 468 (595)
T 3f9v_A 412 HEAM-------EQQTVSIAKAGIVAKLNARAAVIAAGNPKF-GRYISERPVSDNINLPPTILSRF 468 (595)
T ss_dssp HHHH-------HSSSEEEESSSSEEEECCCCEEEEEECCTT-CCSCTTSCSCTTTCSCSSSGGGC
T ss_pred HHHH-------hCCEEEEecCCcEEEecCceEEEEEcCCcC-CccCcccCchhccCCCHHHHhhC
Confidence 5443 333333333488899999999999999973 444 8999988866
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00013 Score=90.01 Aligned_cols=165 Identities=12% Similarity=0.125 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCCC--cccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHH
Q psy12680 1322 RNIALMKLLVTHQKP--VMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQD 1399 (2567)
Q Consensus 1322 R~~~ll~~ll~~~~p--vll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~ 1399 (2567)
+....+...+..+.| ++++||||||||++++.....+..... .-....+.++.+||...+++..+-.
T Consensus 31 ~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~-----------~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 31 RIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSA-----------RKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTT-----------TTSSCCEEEEEEETTCCC--HHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhh-----------hccCCceEEEEEeccccCCHHHHHH
Confidence 344456666766554 789999999999999754322111000 0001246788999999988877766
Q ss_pred HHHhhhhcccCCccCC--------------CCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeee
Q psy12680 1400 IIMSKLDKRRKGVYGP--------------PLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKL 1465 (2567)
Q Consensus 1400 ~ies~lekr~~~~~gp--------------~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i 1465 (2567)
.|-..+...+ ...|. ..++.+|||+|+++.=. .| .+|..+++ |... .-
T Consensus 100 ~I~~~L~g~~-~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-----~q---~~L~~l~~---~~~~------~~ 161 (318)
T 3te6_A 100 KIWFAISKEN-LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-----SE---KILQYFEK---WISS------KN 161 (318)
T ss_dssp HHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-----CT---HHHHHHHH---HHHC------SS
T ss_pred HHHHHhcCCC-CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-----cc---hHHHHHHh---cccc------cC
Confidence 6655553221 01111 24568999999987543 33 45555554 2211 11
Q ss_pred eeeeeeeecCCCCCC-CCCCcchhccc--cceeccCCCHHHHHHHHHHHHHhh
Q psy12680 1466 IEIQLMCAMGPPSTG-NTVTPRFSRHF--NQIVINKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1466 ~diq~v~am~Ppggg-~~is~Rf~r~f--~vi~i~~p~~~sL~~If~~il~~~ 1515 (2567)
.++.+++..|...-- ..+++|+.+.| .++.++.++.+.+..|...-+...
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 245667766654321 23455666666 468899999999999998776553
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.59 E-value=0.00012 Score=91.26 Aligned_cols=139 Identities=12% Similarity=0.194 Sum_probs=91.2
Q ss_pred HHHHHHhcCC---CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHH
Q psy12680 1326 LMKLLVTHQK---PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIM 1402 (2567)
Q Consensus 1326 ll~~ll~~~~---pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ie 1402 (2567)
.+..++..+. ++++.||+|||||++++.. .+.+ ....+.+|.|... ...+++.+.
T Consensus 37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~l------------------a~~l---~~~~~~i~~~~~~-~~~i~~~~~ 94 (324)
T 3u61_B 37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKAL------------------CHDV---NADMMFVNGSDCK-IDFVRGPLT 94 (324)
T ss_dssp HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHH------------------HHHT---TEEEEEEETTTCC-HHHHHTHHH
T ss_pred HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHH------------------HHHh---CCCEEEEcccccC-HHHHHHHHH
Confidence 3445555554 3577888999999888642 2222 2345566765543 445555444
Q ss_pred hhhhcccCCccCCCCCcEEEEEEcCCCCcc-ccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1403 SKLDKRRKGVYGPPLGKRCVVFVDDVNMPL-KEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1403 s~lekr~~~~~gp~~gK~~vvFiDDiNmP~-~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
..... .|..|+..|+|+||++.-. .+ ..+.|+.+++... .++.+++++|++.
T Consensus 95 ~~~~~------~~~~~~~~vliiDEi~~l~~~~------~~~~L~~~le~~~------------~~~~iI~~~n~~~--- 147 (324)
T 3u61_B 95 NFASA------ASFDGRQKVIVIDEFDRSGLAE------SQRHLRSFMEAYS------------SNCSIIITANNID--- 147 (324)
T ss_dssp HHHHB------CCCSSCEEEEEEESCCCGGGHH------HHHHHHHHHHHHG------------GGCEEEEEESSGG---
T ss_pred HHHhh------cccCCCCeEEEEECCcccCcHH------HHHHHHHHHHhCC------------CCcEEEEEeCCcc---
Confidence 33322 3445688999999998654 32 3456677766421 3467888888765
Q ss_pred CCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1482 TVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1482 ~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+++.+.|.++.++.|+.+.+..|+..++.
T Consensus 148 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~ 179 (324)
T 3u61_B 148 GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIR 179 (324)
T ss_dssp GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999997777666543
No 31
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.58 E-value=0.00023 Score=87.94 Aligned_cols=129 Identities=19% Similarity=0.266 Sum_probs=84.4
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhh---------------hhhhh--cCccccccccccCC
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFF---------------KGLIA--TGAWACFDEFNRID 65 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif---------------~Gl~q--~GaW~CFDEfNri~ 65 (2567)
.||+|||||.+++.+|+.+ +.+++.+||++-.+.....+++ .+... .|....|||+++++
T Consensus 53 ~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~ 132 (311)
T 4fcw_A 53 LGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH 132 (311)
T ss_dssp ESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC
T ss_pred ECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC
Confidence 5999999999999999999 6669999999876655555443 22222 35789999999999
Q ss_pred chhHHHHHHHHHhhhhhhhcCCceEEE-cCeEEEeeCceeEEEEeCCC------CCCCCCch----------------hh
Q psy12680 66 VEVLSVVAQQILTIQRGVTLGEEEILF-EGTILKLDRTCSVFITMNPG------YAGRSELP----------------DN 122 (2567)
Q Consensus 66 ~~vLSvvaqqi~~Iq~a~~~~~~~~~f-~g~~i~l~~~~~iFiTmNPg------YaGRseLP----------------dn 122 (2567)
.++...+.+.+..-. +.. .|..+.+ +++-+++|.|+| ..|+..-| +.
T Consensus 133 ~~~~~~Ll~~le~~~---------~~~~~~~~~~~-~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 202 (311)
T 4fcw_A 133 PDVFNILLQMLDDGR---------LTDSHGRTVDF-RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPE 202 (311)
T ss_dssp HHHHHHHHHHHHHSE---------EECTTSCEEEC-TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHH
T ss_pred HHHHHHHHHHHhcCE---------EEcCCCCEEEC-CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHH
Confidence 988887766664311 111 2334444 345589999985 22222222 23
Q ss_pred Hhhcc-ccccccCCCHHHHHHHH
Q psy12680 123 LKSLF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 123 Lk~lF-Rpvam~~PD~~lIaEi~ 144 (2567)
|..-| .-+.+..|+..-|.+|+
T Consensus 203 l~~R~~~~~~~~p~~~~~~~~i~ 225 (311)
T 4fcw_A 203 FLNRLDEIVVFRPLTKEQIRQIV 225 (311)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHH
T ss_pred HHhcCCeEEEeCCCCHHHHHHHH
Confidence 33333 34556667877776664
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.57 E-value=0.00011 Score=92.19 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=89.8
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhhhhc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTL 85 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~ 85 (2567)
.||+|||||..++.+|+.+|.+++..||+..-....+...+..++ .|...++||+++++.++...+-+.+ ..
T Consensus 61 ~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll~~l-------~~ 132 (338)
T 3pfi_A 61 SGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLS-EGDILFIDEIHRLSPAIEEVLYPAM-------ED 132 (338)
T ss_dssp ECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCC-TTCEEEEETGGGCCHHHHHHHHHHH-------HT
T ss_pred ECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhcc-CCCEEEEechhhcCHHHHHHHHHHH-------Hh
Confidence 699999999999999999999999999988777777777777654 5678999999999977665554433 22
Q ss_pred CCceEEEcC----eEEEee-CceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHH
Q psy12680 86 GEEEILFEG----TILKLD-RTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 86 ~~~~~~f~g----~~i~l~-~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~ 144 (2567)
+...+...+ ..+.++ |.+-+..+.|+- ..+++.|+.-| ..+.+-.|+..-+.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~----~~l~~~L~~R~~~~i~l~~~~~~e~~~il 193 (338)
T 3pfi_A 133 YRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA----GMLSNPLRDRFGMQFRLEFYKDSELALIL 193 (338)
T ss_dssp SCC---------CCCCCCCCCCCEEEEEESCG----GGSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred ccchhhcccCccccceecCCCCeEEEEeCCCc----cccCHHHHhhcCEEeeCCCcCHHHHHHHH
Confidence 222222211 223322 245667777752 23777788777 77889999988887764
No 33
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.57 E-value=6.7e-05 Score=95.62 Aligned_cols=154 Identities=18% Similarity=0.280 Sum_probs=93.1
Q ss_pred HHHHHHHhcCC--CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccc--------cccceeecccccc-C
Q psy12680 1325 ALMKLLVTHQK--PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIE--------QWQPLIMNFSAQT-S 1393 (2567)
Q Consensus 1325 ~ll~~ll~~~~--pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~--------~~~~~~lnfSa~T-t 1393 (2567)
..+..++..+. +++++||+|||||++++... +.+... .+.++.+|++..+ +
T Consensus 34 ~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIF------------------NEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp HHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHH------------------HHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred HHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHH------------------HHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 34455555554 49999999999999886432 111111 4556778887776 6
Q ss_pred HHHHHHHHHhhhhcccCCccCC------------CCCcEEEEEEcCCCCccccccCCCChHHH-HHHHhhcccccccCcc
Q psy12680 1394 ANQTQDIIMSKLDKRRKGVYGP------------PLGKRCVVFVDDVNMPLKEEFGAQPPIEI-LRQWLDHWMWYDRKDV 1460 (2567)
Q Consensus 1394 s~~~q~~ies~lekr~~~~~gp------------~~gK~~vvFiDDiNmP~~d~yGtQ~~iel-LRQlid~~g~ydr~~~ 1460 (2567)
+..+...+...+.......-|. ...++.|+|+||++.-... ..+ ++ +.++++..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~--~~~---~~~l~~l~~~~-------- 162 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKR--RGG---DIVLYQLLRSD-------- 162 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHS--TTS---HHHHHHHHTSS--------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccC--CCC---ceeHHHHhcCC--------
Confidence 6655554444441110000000 0122239999998643211 112 34 55555421
Q ss_pred eeeeeeeeeeeeecCCCCCCCCCCcchhccc-cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1461 VAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF-NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1461 ~~~~i~diq~v~am~Ppggg~~is~Rf~r~f-~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.++.++++.+.+..-..+.+++.+.| .++.++.++.+.+..|+...+..
T Consensus 163 -----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~ 212 (384)
T 2qby_B 163 -----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY 212 (384)
T ss_dssp -----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH
T ss_pred -----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 46778888887654455778877765 47889999999999999987764
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.56 E-value=5.8e-05 Score=94.13 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=81.6
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc------CHHHHHHHHHhhhhc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT------SANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T------ts~~~q~~ies~lek 1407 (2567)
.++++|+||+|||||+++++.... +. ...++.++++.-. +...+..+.+. ..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~------------------~~--~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~-a~- 102 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE------------------AN--NSTFFSISSSDLVSKWLGESEKLVKNLFQL-AR- 102 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH------------------TT--SCEEEEEECCSSCCSSCCSCHHHHHHHHHH-HH-
T ss_pred CceEEEECCCCccHHHHHHHHHHH------------------cC--CCcEEEEEhHHHHhhhhhHHHHHHHHHHHH-HH-
Confidence 367999999999999988753221 10 1122333433221 22223333221 11
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCccccccCCC--ChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCc
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQ--PPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTP 1485 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ--~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~ 1485 (2567)
.++.+|+|+||++.-....-..+ ....++.+++..-.-+.. .-.++.+++|.|.| ..+++
T Consensus 103 ---------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~------~~~~v~vI~atn~~---~~ld~ 164 (322)
T 1xwi_A 103 ---------ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV------DNDGILVLGATNIP---WVLDS 164 (322)
T ss_dssp ---------HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS------CCTTEEEEEEESCT---TTSCH
T ss_pred ---------hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc------cCCCEEEEEecCCc---ccCCH
Confidence 12458999999986544332222 222334444332111110 11357789999988 35788
Q ss_pred chhccc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1486 RFSRHF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1486 Rf~r~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.|.| .++.++.|+.+....|+..++.
T Consensus 165 al~rRf~~~i~i~~P~~~~r~~il~~~l~ 193 (322)
T 1xwi_A 165 AIRRRFEKRIYIPLPEPHARAAMFKLHLG 193 (322)
T ss_dssp HHHHTCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred HHHhhcCeEEEeCCcCHHHHHHHHHHHHh
Confidence 898888 6788999999999999887664
No 35
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.53 E-value=4e-05 Score=99.87 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCCccc--cccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhcccc-cee
Q psy12680 1419 KRCVVFVDDVNMPLK--EEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN-QIV 1495 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~--d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~-vi~ 1495 (2567)
+.+|||+||++.-.. ...+......++.+++..-..... .-.++.+++|+|+| ..+++.+.|.|. ++.
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~------~~~~v~vI~atn~~---~~ld~al~rRf~~~i~ 297 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV------DNDGILVLGATNIP---WVLDSAIRRRFEKRIY 297 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC------CCSSCEEEEEESCG---GGSCHHHHTTCCEEEE
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc------CCCCEEEEecCCCc---cccCHHHHhhcceEEE
Confidence 458999999985432 222233344556666553211110 12357889999988 357888999884 788
Q ss_pred ccCCCHHHHHHHHHHHHH
Q psy12680 1496 INKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1496 i~~p~~~sL~~If~~il~ 1513 (2567)
++.|+.+....|+..++.
T Consensus 298 i~~P~~~~r~~il~~~l~ 315 (444)
T 2zan_A 298 IPLPEAHARAAMFRLHLG 315 (444)
T ss_dssp CCCCCHHHHHHHHHHHHT
T ss_pred eCCcCHHHHHHHHHHHHh
Confidence 999999999999887653
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.50 E-value=0.00027 Score=87.85 Aligned_cols=129 Identities=14% Similarity=0.104 Sum_probs=88.5
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhhhh
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVT 84 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~ 84 (2567)
..||+|||||.+++.+++.+|.+++.+||+.......+...|.+....|...++||+++++.+....+-..+..
T Consensus 43 l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~------ 116 (324)
T 1hqc_A 43 LFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMED------ 116 (324)
T ss_dssp EECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHH------
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHh------
Confidence 36999999999999999999999999999998777777777777444677999999999998766555443332
Q ss_pred cCCceEEEcC----eEEEee-CceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHH
Q psy12680 85 LGEEEILFEG----TILKLD-RTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 85 ~~~~~~~f~g----~~i~l~-~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~ 144 (2567)
+...+.... ..+... +.+-++.|.|.. ..+++.|..-| ..+.+-.|+..-+.+++
T Consensus 117 -~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~----~~~~~~l~~R~~~~i~l~~~~~~e~~~~l 177 (324)
T 1hqc_A 117 -FVMDIVIGQGPAARTIRLELPRFTLIGATTRP----GLITAPLLSRFGIVEHLEYYTPEELAQGV 177 (324)
T ss_dssp -SEEEECCSSSSSCCCEEEECCCCEEEEEESCC----SSCSCSTTTTCSCEEECCCCCHHHHHHHH
T ss_pred -hhhHHhccccccccccccCCCCEEEEEeCCCc----ccCCHHHHhcccEEEecCCCCHHHHHHHH
Confidence 111111110 123222 345566666643 23555566656 56788889988776664
No 37
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.49 E-value=2.8e-05 Score=104.66 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=58.7
Q ss_pred EEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeee-eeeeeeeecCCCCCCC----------CCCcchhc
Q psy12680 1421 CVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKL-IEIQLMCAMGPPSTGN----------TVTPRFSR 1489 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i-~diq~v~am~Ppggg~----------~is~Rf~r 1489 (2567)
.|+|+|+++.-.++ ....|.+.++.+-+.-.+......+ .++.++||+||+.|.. .+++-+++
T Consensus 393 gil~IDEid~l~~~------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~ 466 (595)
T 3f9v_A 393 GIAVIDEIDKMRDE------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS 466 (595)
T ss_dssp SEECCTTTTCCCSH------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG
T ss_pred CcEEeehhhhCCHh------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh
Confidence 59999999964332 4577888888776542111222233 5788999999997654 77888999
Q ss_pred ccc--ceeccCCCHHHHHHHHHHHHHhh
Q psy12680 1490 HFN--QIVINKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1490 ~f~--vi~i~~p~~~sL~~If~~il~~~ 1515 (2567)
.|. .+..+.|+.+ -..|...++..+
T Consensus 467 RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 467 RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 984 3445666666 666666665443
No 38
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.49 E-value=0.00017 Score=88.18 Aligned_cols=120 Identities=23% Similarity=0.211 Sum_probs=83.1
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccH------HHHHHhhhhhhhc-CccccccccccC-----------Cch
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY------IGLGKFFKGLIAT-GAWACFDEFNRI-----------DVE 67 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~------~~m~rif~Gl~q~-GaW~CFDEfNri-----------~~~ 67 (2567)
.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+.++|.-+... .+..++||++++ +.+
T Consensus 57 ~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 136 (285)
T 3h4m_A 57 YGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDRE 136 (285)
T ss_dssp ESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGH
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHH
Confidence 6999999999999999999999999999875432 2334444333222 368899999998 555
Q ss_pred hHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--cc-ccccccCCCHHHHHHHH
Q psy12680 68 VLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 68 vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lF-Rpvam~~PD~~lIaEi~ 144 (2567)
+...+.+.+..+... .. +.++-++.|.|+- ..|++.+.. .| +-+.+-.||..-..+|+
T Consensus 137 ~~~~l~~ll~~~~~~-~~--------------~~~~~vI~ttn~~----~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il 197 (285)
T 3h4m_A 137 VQRTLMQLLAEMDGF-DA--------------RGDVKIIGATNRP----DILDPAILRPGRFDRIIEVPAPDEKGRLEIL 197 (285)
T ss_dssp HHHHHHHHHHHHHTT-CS--------------SSSEEEEEECSCG----GGBCHHHHSTTSEEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CC--------------CCCEEEEEeCCCc----hhcCHHHcCCCcCCeEEEECCCCHHHHHHHH
Confidence 555555555443211 11 1245567788853 457777766 55 57888899998887774
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.49 E-value=0.0002 Score=89.20 Aligned_cols=113 Identities=23% Similarity=0.226 Sum_probs=86.8
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhc------CccccccccccCC-chhHHHHHHHHHh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIAT------GAWACFDEFNRID-VEVLSVVAQQILT 78 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~------GaW~CFDEfNri~-~~vLSvvaqqi~~ 78 (2567)
.||+|||||.+++.+|+.+|..++-+||++. ....+...+.+.++. +.-..+||++++. .+....+-..+..
T Consensus 54 ~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 54 SPSPGTGKTTVAKALCHDVNADMMFVNGSDC-KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp CSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred eCcCCCCHHHHHHHHHHHhCCCEEEEccccc-CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 5889999999999999999999999999884 377777777776664 4567899999998 6655544433332
Q ss_pred hhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHH
Q psy12680 79 IQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEI 143 (2567)
Q Consensus 79 Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi 143 (2567)
. .+++-+.+|.|+.. .+++.|++-|+.+.+-.|+..-+.++
T Consensus 133 ~--------------------~~~~~iI~~~n~~~----~l~~~l~sR~~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 133 Y--------------------SSNCSIIITANNID----GIIKPLQSRCRVITFGQPTDEDKIEM 173 (324)
T ss_dssp H--------------------GGGCEEEEEESSGG----GSCTTHHHHSEEEECCCCCHHHHHHH
T ss_pred C--------------------CCCcEEEEEeCCcc----ccCHHHHhhCcEEEeCCCCHHHHHHH
Confidence 1 13455667888643 68999999999999999997766555
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.49 E-value=4.8e-05 Score=94.07 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=55.5
Q ss_pred EEEEEcCCCCccccc---cCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC--CCCCcchhccc-cce
Q psy12680 1421 CVVFVDDVNMPLKEE---FGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHF-NQI 1494 (2567)
Q Consensus 1421 ~vvFiDDiNmP~~d~---yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg--~~is~Rf~r~f-~vi 1494 (2567)
.|+|+||++.-.... -.++..+..|.++++.+. .++.++++.+++.-. ..+.|.+.+.| .++
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i 199 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR------------DDLVVILAGYADRMENFFQSNPGFRSRIAHHI 199 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT------------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEE
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC------------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEE
Confidence 399999987432111 124456677777777532 245677777765211 12357888888 889
Q ss_pred eccCCCHHHHHHHHHHHHHh
Q psy12680 1495 VINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1495 ~i~~p~~~sL~~If~~il~~ 1514 (2567)
.++.|+.+.+..|+..++..
T Consensus 200 ~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 200 EFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EECCCCHHHHHHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.47 E-value=0.00024 Score=85.42 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccC------------C
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRI------------D 65 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri------------~ 65 (2567)
..||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|.-+.. .++-.++||++++ +
T Consensus 44 l~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 44 LLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Confidence 4699999999999999999999999999998543 2334445544332 3678999999999 3
Q ss_pred chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--cc-ccccccCCCHHHHHH
Q psy12680 66 VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LF-RTVAMMVPDYALISE 142 (2567)
Q Consensus 66 ~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lF-Rpvam~~PD~~lIaE 142 (2567)
.+....+.+.+..+..... ...+-++.|-|+. ..|++.|.. -| +.+.+-.||..-..+
T Consensus 124 ~~~~~~l~~ll~~~~~~~~---------------~~~~~vi~~tn~~----~~ld~~l~~~~R~~~~i~i~~p~~~~r~~ 184 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGT---------------TDHVIVLASTNRA----DILDGALMRPGRLDRHVFIDLPTLQERRE 184 (262)
T ss_dssp ---CHHHHHHHHHHHTCCT---------------TCCEEEEEEESCG----GGGGSGGGSTTSCCEEEECCSCCHHHHHH
T ss_pred hhHHHHHHHHHHHhhCcCC---------------CCCEEEEecCCCh----hhcCHHHhcCCcCCeEEEeCCcCHHHHHH
Confidence 3344444444443322110 1234456677742 356666666 66 677788999988777
Q ss_pred HH
Q psy12680 143 II 144 (2567)
Q Consensus 143 i~ 144 (2567)
++
T Consensus 185 il 186 (262)
T 2qz4_A 185 IF 186 (262)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=0.0002 Score=95.23 Aligned_cols=140 Identities=21% Similarity=0.252 Sum_probs=89.1
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhccc-CCc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRR-KGV 1412 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~-~~~ 1412 (2567)
..+++|+||+|||||++++.. .+.+ .+.++.+|+|...+...+...+........ .+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~l------------------a~~l---~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~ 135 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLV------------------AQEL---GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGY 135 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHH------------------HHHT---TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTT
T ss_pred CcEEEEECCCCCCHHHHHHHH------------------HHHc---CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHH
Confidence 368999999999999988642 2222 345677888887776655544433322221 122
Q ss_pred cC------CCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcc
Q psy12680 1413 YG------PPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPR 1486 (2567)
Q Consensus 1413 ~g------p~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~R 1486 (2567)
+. +..++..|+|+||+..-.. +.|..+..|.++++..+ ..++++++.+.. ...+.
T Consensus 136 ~~~~~~~~~~~~~~~vliIDEid~l~~---~~~~~l~~L~~~l~~~~--------------~~iIli~~~~~~--~~l~~ 196 (516)
T 1sxj_A 136 FKHNEEAQNLNGKHFVIIMDEVDGMSG---GDRGGVGQLAQFCRKTS--------------TPLILICNERNL--PKMRP 196 (516)
T ss_dssp TTC----CCSSTTSEEEEECSGGGCCT---TSTTHHHHHHHHHHHCS--------------SCEEEEESCTTS--STTGG
T ss_pred HhhhhhhhhccCCCeEEEEECCCccch---hhHHHHHHHHHHHHhcC--------------CCEEEEEcCCCC--ccchh
Confidence 22 2346789999999854322 24556777888877532 234555554321 22345
Q ss_pred hhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1487 FSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1487 f~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+.|....+.++.|+.+.+..++..++.
T Consensus 197 l~~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 197 FDRVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp GTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence 677777889999999999998877664
No 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.47 E-value=0.00016 Score=90.69 Aligned_cols=136 Identities=16% Similarity=0.263 Sum_probs=89.5
Q ss_pred CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCccC
Q psy12680 1335 KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYG 1414 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~~g 1414 (2567)
.+++|+||+|||||++++... +.+ ....+.+|++..+....+...+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------- 103 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS------------------YEM---SANIKTTAAPMIEKSGDLAAILTN----------- 103 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH------------------HHT---TCCEEEEEGGGCCSHHHHHHHHHT-----------
T ss_pred CeEEEECcCCCCHHHHHHHHH------------------HHh---CCCeEEecchhccchhHHHHHHHh-----------
Confidence 689999999999998886421 111 223566788877777766665533
Q ss_pred CCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccC------cceeeeeeeeeeeeecCCCCCCCCCCcchh
Q psy12680 1415 PPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRK------DVVAVKLIEIQLMCAMGPPSTGNTVTPRFS 1488 (2567)
Q Consensus 1415 p~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~------~~~~~~i~diq~v~am~Ppggg~~is~Rf~ 1488 (2567)
.++..++|+||++.-.. ...+.|.+.++.+...--. ...-....++.+++|+|.++. +.+.+.
T Consensus 104 --~~~~~vl~lDEi~~l~~------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~---l~~~L~ 172 (338)
T 3pfi_A 104 --LSEGDILFIDEIHRLSP------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGM---LSNPLR 172 (338)
T ss_dssp --CCTTCEEEEETGGGCCH------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGG---SCHHHH
T ss_pred --ccCCCEEEEechhhcCH------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccc---cCHHHH
Confidence 23457999999884322 3456666777765432100 000011124789999997543 677888
Q ss_pred ccc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1489 RHF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1489 r~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+.| .++.++.|+.+.+..|+...+.
T Consensus 173 ~R~~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 173 DRFGMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp TTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcCEEeeCCCcCHHHHHHHHHHHHH
Confidence 888 7889999999999988887654
No 44
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.47 E-value=9.7e-05 Score=89.37 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=82.7
Q ss_pred CCCCCCCchhHHHHHHHHhc---CeEEEEeCCCCccHHHHHHhh--------------hhhh--hcCccccccccccCCc
Q psy12680 6 EGPAGTGKTETTKDLAKAVA---KLCIVFNCSDSMDYIGLGKFF--------------KGLI--ATGAWACFDEFNRIDV 66 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG---~~~~vfNCs~~~d~~~m~rif--------------~Gl~--q~GaW~CFDEfNri~~ 66 (2567)
.||+|||||..++.+++.++ .+++.+||++-.+-.....+| .|+. ..|...++||+++++.
T Consensus 35 ~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~ 114 (265)
T 2bjv_A 35 IGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM 114 (265)
T ss_dssp ECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH
T ss_pred ECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH
Confidence 69999999999999999986 689999999864432222222 1221 2366899999999999
Q ss_pred hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCC---CCCCchhhHhhccccccccCCCHHH
Q psy12680 67 EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYA---GRSELPDNLKSLFRTVAMMVPDYAL 139 (2567)
Q Consensus 67 ~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYa---GRseLPdnLk~lFRpvam~~PD~~l 139 (2567)
++...+.+.+.. + .+.-.|.......++.+.+|.|+... ....+++.|..-|..+.+..|++.-
T Consensus 115 ~~q~~Ll~~l~~-------~--~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~ 181 (265)
T 2bjv_A 115 MVQEKLLRVIEY-------G--ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRE 181 (265)
T ss_dssp HHHHHHHHHHHH-------C--EECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGG
T ss_pred HHHHHHHHHHHh-------C--CeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhh
Confidence 876655444332 1 12112333445567889999998532 1224566676666667788888753
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.0001 Score=91.11 Aligned_cols=141 Identities=20% Similarity=0.265 Sum_probs=78.0
Q ss_pred hcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCC
Q psy12680 1332 THQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1332 ~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~ 1411 (2567)
..+.+++|+||+|||||+++++... .+. ...+.++++.- .....+..+++.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~------------------~~~---~~~i~v~~~~l------~~~~~g~~~~~~~~ 99 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN------------------ECQ---ANFISIKGPEL------LTMWFGESEANVRE 99 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH------------------HTT---CEEEEECHHHH------HHHHHTTCTTHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH------------------HhC---CCEEEEEhHHH------HhhhcCchHHHHHH
Confidence 3467899999999999998875321 111 12233333221 11111111111111
Q ss_pred ccCCC-CCcEEEEEEcCCCCccccccCC---------CChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1412 VYGPP-LGKRCVVFVDDVNMPLKEEFGA---------QPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1412 ~~gp~-~gK~~vvFiDDiNmP~~d~yGt---------Q~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
.|... .+..+|+|+||+........+. ....+||+.+- |... -.++.+++|.|.|.
T Consensus 100 ~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~---~~~~--------~~~v~vi~atn~~~--- 165 (301)
T 3cf0_A 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD---GMST--------KKNVFIIGATNRPD--- 165 (301)
T ss_dssp HHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH---SSCT--------TSSEEEEEEESCGG---
T ss_pred HHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh---cccC--------CCCEEEEEecCCcc---
Confidence 11111 1235899999998654432211 11345555442 1111 13578899999873
Q ss_pred CCCcchhc--cc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1482 TVTPRFSR--HF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1482 ~is~Rf~r--~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+.++| .| .++.++.|+.+....|+..++.
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 36666766 45 4688999999999888876553
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.45 E-value=1.8e-05 Score=103.79 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=77.0
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCH---HHHHHHHHhhhhccc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSA---NQTQDIIMSKLDKRR 1409 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts---~~~q~~ies~lekr~ 1409 (2567)
...+++|+||+|||||++++.....+..... .. ......++.+++++.... ..++.+++. +.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~-p~----------~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~-~~--- 264 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEV-PE----------ILRDKRVMTLDMGTKYRGEFEDRLKKVMDE-IR--- 264 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCS-CT----------TTSSCCEECC----------CTTHHHHHHH-HH---
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCC-Ch----------hhcCCeEEEeeCCccccchHHHHHHHHHHH-HH---
Confidence 4568899999999999988753222111000 00 001223445555511110 112222211 11
Q ss_pred CCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC--CCCCcch
Q psy12680 1410 KGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRF 1487 (2567)
Q Consensus 1410 ~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg--~~is~Rf 1487 (2567)
..+..|+|+| |++....+|...++.| ++.+++|++++.-. ..+++.|
T Consensus 265 -------~~~~~iLfiD----------~~~~a~~~L~~~L~~g--------------~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 265 -------QAGNIILFID----------AAIDASNILKPSLARG--------------ELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp -------TCCCCEEEEC----------C--------CCCTTSS--------------SCEEEEECCTTTTHHHHTTCSHH
T ss_pred -------hcCCeEEEEe----------CchhHHHHHHHhhcCC--------------CEEEEecCCHHHHHHHhhcCHHH
Confidence 1235799999 6666666666666643 46789999987643 3578999
Q ss_pred hccccceeccCCCHHHHHHHHHHHHHhh
Q psy12680 1488 SRHFNQIVINKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1488 ~r~f~vi~i~~p~~~sL~~If~~il~~~ 1515 (2567)
.|.|.++.++.|+.+....|+..++..+
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~~~ 341 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRDRY 341 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTTTS
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998766443
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.45 E-value=1e-05 Score=91.59 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCCcccc---ccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC--CCCCcchhcccc
Q psy12680 1418 GKRCVVFVDDVNMPLKE---EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFN 1492 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d---~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg--~~is~Rf~r~f~ 1492 (2567)
++..++|+||++.-... .-+.+....+|+++++.+ ++.++++++++... ..+++++.+.|.
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~ii~~~~~~~~~~~~~~~~~l~~R~~ 179 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG--------------ELRCIGATTVSEYRQFIEKDKALERRFQ 179 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT--------------CSCEEEEECHHHHHHHTTTCHHHHHHEE
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC--------------CeeEEEecCHHHHHHHHhccHHHHHhcC
Confidence 34579999999764311 233467788888887642 35688888876432 346889999999
Q ss_pred ceeccCCC
Q psy12680 1493 QIVINKFD 1500 (2567)
Q Consensus 1493 vi~i~~p~ 1500 (2567)
.+.++.|+
T Consensus 180 ~i~i~~p~ 187 (187)
T 2p65_A 180 QILVEQPS 187 (187)
T ss_dssp EEECCSCC
T ss_pred cccCCCCC
Confidence 99988885
No 48
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.45 E-value=0.00043 Score=86.06 Aligned_cols=139 Identities=15% Similarity=0.202 Sum_probs=88.3
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGV 1412 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~ 1412 (2567)
...+++|+||+|||||++++... +.+ ......++++..+....+...+..
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~------------------~~~---~~~~~~~~~~~~~~~~~l~~~l~~--------- 86 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIA------------------HEL---GVNLRVTSGPAIEKPGDLAAILAN--------- 86 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHH------------------HHH---TCCEEEECTTTCCSHHHHHHHHTT---------
T ss_pred CCCcEEEECCCCCCHHHHHHHHH------------------HHh---CCCEEEEeccccCChHHHHHHHHH---------
Confidence 34799999999999998886422 111 123456778877776665554432
Q ss_pred cCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccc-----cCccee-eeeeeeeeeeecCCCCCCCCCCcc
Q psy12680 1413 YGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYD-----RKDVVA-VKLIEIQLMCAMGPPSTGNTVTPR 1486 (2567)
Q Consensus 1413 ~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~yd-----r~~~~~-~~i~diq~v~am~Ppggg~~is~R 1486 (2567)
..++..++|+||++.-.. ...+.|..+++.+...- .....+ ....++.++++.+.++ .+.+.
T Consensus 87 ---~~~~~~~l~lDEi~~l~~------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~---~~~~~ 154 (324)
T 1hqc_A 87 ---SLEEGDILFIDEIHRLSR------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG---LITAP 154 (324)
T ss_dssp ---TCCTTCEEEETTTTSCCH------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS---SCSCS
T ss_pred ---hccCCCEEEEECCccccc------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc---cCCHH
Confidence 123456999999985432 23456666777654331 001111 1224688999998874 34556
Q ss_pred hhccc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1487 FSRHF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1487 f~r~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+.+.| .++.++.|+.+.+..++..++.
T Consensus 155 l~~R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 155 LLSRFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp TTTTCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred HHhcccEEEecCCCCHHHHHHHHHHHHH
Confidence 66677 5888999999998888776553
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.44 E-value=0.00012 Score=92.24 Aligned_cols=130 Identities=21% Similarity=0.288 Sum_probs=84.5
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEE----EEeCCCCcc---------------------------H-HHHH-----Hhh-
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCI----VFNCSDSMD---------------------------Y-IGLG-----KFF- 46 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~----vfNCs~~~d---------------------------~-~~m~-----rif- 46 (2567)
..||+|||||.+++.+++.+++..+ -|||..... . ...| +.+
T Consensus 50 l~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (350)
T 1g8p_A 50 VFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAIS 129 (350)
T ss_dssp EECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHH
T ss_pred EECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhc
Confidence 3699999999999999999986321 157764321 1 1111 111
Q ss_pred -------hhhhh--cCccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCC
Q psy12680 47 -------KGLIA--TGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRS 117 (2567)
Q Consensus 47 -------~Gl~q--~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRs 117 (2567)
.|+.. .|...++||+++++.+++..+-+.+. .+...+.-.|........+.+..|+||.. .
T Consensus 130 ~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le-------~~~~~~~~~g~~~~~~~~~~li~~~n~~~---~ 199 (350)
T 1g8p_A 130 KGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ-------SGENVVERDGLSIRHPARFVLVGSGNPEE---G 199 (350)
T ss_dssp HCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH-------HSEEEECCTTCCEEEECCEEEEEEECSCS---C
T ss_pred CCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHh-------cCceEEEecceEEeeCCceEEEEEeCCCC---C
Confidence 11111 26789999999999987775544333 23233444677778888899999999843 3
Q ss_pred CchhhHhhcccc-ccccCC-CHHHHHHHH
Q psy12680 118 ELPDNLKSLFRT-VAMMVP-DYALISEII 144 (2567)
Q Consensus 118 eLPdnLk~lFRp-vam~~P-D~~lIaEi~ 144 (2567)
.|++.|..-|.. +.+-.| |...-.+|+
T Consensus 200 ~l~~~L~~R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 200 DLRPQLLDRFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp CCCHHHHTTCSEEEECCCCCSHHHHHHHH
T ss_pred CCCHHHHhhcceEEEcCCCCcHHHHHHHH
Confidence 588889888855 677777 554433443
No 50
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.44 E-value=9.6e-05 Score=96.90 Aligned_cols=153 Identities=12% Similarity=0.154 Sum_probs=74.6
Q ss_pred HHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhh
Q psy12680 1327 MKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLD 1406 (2567)
Q Consensus 1327 l~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~le 1406 (2567)
+...+..+.|++|+||||||||+++++.-. .+... -....+++.. +++..+-...... .
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAraLa~------------------~l~~~-~~f~~~~~~~-~t~~dL~G~~~~~-~ 92 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARRLKF------------------AFQNA-RAFEYLMTRF-STPEEVFGPLSIQ-A 92 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHHGGG------------------GBSSC-CEEEEECCTT-CCHHHHHCCBC----
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHHHHH------------------HHhhh-hHHHHHHHhc-CCHHHhcCcccHH-H
Confidence 344556788999999999999998864211 11100 0011222222 2332221100000 0
Q ss_pred cccCCccC-CCCC---cEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCC-CCCC
Q psy12680 1407 KRRKGVYG-PPLG---KRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPP-STGN 1481 (2567)
Q Consensus 1407 kr~~~~~g-p~~g---K~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Pp-ggg~ 1481 (2567)
.+..+.|. ...| ...|+|+||+|.- .......|.+.++.+-+... .....+..--+++|.||+ ..+.
T Consensus 93 ~~~~g~~~~~~~g~l~~~~IL~IDEI~r~------~~~~q~~LL~~lee~~v~i~--G~~~~~~~~~iI~ATN~lpe~~~ 164 (500)
T 3nbx_X 93 LKDEGRYERLTSGYLPEAEIVFLDEIWKA------GPAILNTLLTAINERQFRNG--AHVEKIPMRLLVAASNELPEADS 164 (500)
T ss_dssp -------CBCCTTSGGGCSEEEEESGGGC------CHHHHHHHHHHHHSSEEECS--SSEEECCCCEEEEEESSCCCTTC
T ss_pred HhhchhHHhhhccCCCcceeeeHHhHhhh------cHHHHHHHHHHHHHHhccCC--CCcCCcchhhhhhccccCCCccc
Confidence 01112221 1122 3569999999743 23345667777776554321 111222222247777763 3332
Q ss_pred CCCcchhccccc-eeccCCCH-HHHHHHHH
Q psy12680 1482 TVTPRFSRHFNQ-IVINKFDD-DTMVTIFS 1509 (2567)
Q Consensus 1482 ~is~Rf~r~f~v-i~i~~p~~-~sL~~If~ 1509 (2567)
..+.+++.|.+ +.+++|+. +....|..
T Consensus 165 -~~~aLldRF~~~i~v~~p~~~ee~~~IL~ 193 (500)
T 3nbx_X 165 -SLEALYDRMLIRLWLDKVQDKANFRSMLT 193 (500)
T ss_dssp -TTHHHHTTCCEEEECCSCCCHHHHHHHHT
T ss_pred -cHHHHHHHHHHHHHHHHhhhhhhHHHHHh
Confidence 33566666644 77899987 55555554
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.43 E-value=0.00035 Score=89.53 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=80.3
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccH------HHHHHhhhhhhhc-CccccccccccCCc--------hhHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY------IGLGKFFKGLIAT-GAWACFDEFNRIDV--------EVLS 70 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~------~~m~rif~Gl~q~-GaW~CFDEfNri~~--------~vLS 70 (2567)
.||+|||||.+++.+|+.+|.+++.+||++-.+. ..+..+|.-+... ++-.++||+++|-. ....
T Consensus 154 ~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~ 233 (389)
T 3vfd_A 154 FGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRR 233 (389)
T ss_dssp ESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHH
T ss_pred ECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHH
Confidence 6999999999999999999999999999985542 3344555544333 36889999999832 2233
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccc-cccccCCCHHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFR-TVAMMVPDYALISEIIV 145 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFR-pvam~~PD~~lIaEi~L 145 (2567)
+..+.+..+...... ....+-|+.|.|+- ..|++.|..-|. -+.+-.||.....+++-
T Consensus 234 ~~~~ll~~l~~~~~~-------------~~~~v~vI~atn~~----~~l~~~l~~R~~~~i~i~~p~~~~r~~il~ 292 (389)
T 3vfd_A 234 LKTEFLIEFDGVQSA-------------GDDRVLVMGATNRP----QELDEAVLRRFIKRVYVSLPNEETRLLLLK 292 (389)
T ss_dssp HHHHHHHHHHHHC------------------CEEEEEEESCG----GGCCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhccccc-------------CCCCEEEEEecCCc----hhcCHHHHcCcceEEEcCCcCHHHHHHHHH
Confidence 333333333322111 11234456677863 367888888774 57788899998888753
No 52
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.42 E-value=0.00016 Score=91.54 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=51.2
Q ss_pred cEEEEEEcCCCCccccccCCC--ChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccc-ccee
Q psy12680 1419 KRCVVFVDDVNMPLKEEFGAQ--PPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF-NQIV 1495 (2567)
Q Consensus 1419 K~~vvFiDDiNmP~~d~yGtQ--~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f-~vi~ 1495 (2567)
+.+|||+||++.-.....+.+ ..-.++.+++..-.... ..-.++.+++|+|.|. .+++.+.|.| ..+.
T Consensus 143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~------~~~~~v~vI~atn~~~---~ld~al~rRf~~~i~ 213 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG------NDSQGVLVLGATNIPW---QLDSAIRRRFERRIY 213 (355)
T ss_dssp SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---------CCEEEEEEESCGG---GSCHHHHHTCCEEEE
T ss_pred CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc------ccCCCeEEEeecCCcc---cCCHHHHcccCEEEE
Confidence 458999999985443322211 11222233322100000 0123578899999874 5678888888 6788
Q ss_pred ccCCCHHHHHHHHHHHHH
Q psy12680 1496 INKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1496 i~~p~~~sL~~If~~il~ 1513 (2567)
++.|+.+....|+..++.
T Consensus 214 i~~P~~~~r~~il~~~l~ 231 (355)
T 2qp9_X 214 IPLPDLAARTTMFEINVG 231 (355)
T ss_dssp CCCCCHHHHHHHHHHHHT
T ss_pred eCCcCHHHHHHHHHHHHh
Confidence 999999999999887664
No 53
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.39 E-value=0.00028 Score=92.55 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=74.7
Q ss_pred CCCCCCCchhHHHHHHHHhc--CeEEEEeCCCCc--------cHH---HHHHh---hhhhhhcCccccccccccCCchhH
Q psy12680 6 EGPAGTGKTETTKDLAKAVA--KLCIVFNCSDSM--------DYI---GLGKF---FKGLIATGAWACFDEFNRIDVEVL 69 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG--~~~~vfNCs~~~--------d~~---~m~ri---f~Gl~q~GaW~CFDEfNri~~~vL 69 (2567)
.||+|||||..++.||+.++ .+....+|.-.. +.. .-|++ -.|....+.+.++||+||++.++.
T Consensus 47 ~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q 126 (500)
T 3nbx_X 47 LGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAIL 126 (500)
T ss_dssp ECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGCCHHHH
T ss_pred ecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHH
Confidence 69999999999999999995 477788886311 111 11222 234333456799999999999988
Q ss_pred HHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCC-CCCCCCchhhHhhcc-ccccccCCCH
Q psy12680 70 SVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPG-YAGRSELPDNLKSLF-RTVAMMVPDY 137 (2567)
Q Consensus 70 Svvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPg-YaGRseLPdnLk~lF-Rpvam~~PD~ 137 (2567)
+.+-+.+. . ..+...|....++..+ ++++.||- -.|. +++.|..=| ..+.+-.||.
T Consensus 127 ~~LL~~le-------e--~~v~i~G~~~~~~~~~-iI~ATN~lpe~~~--~~~aLldRF~~~i~v~~p~~ 184 (500)
T 3nbx_X 127 NTLLTAIN-------E--RQFRNGAHVEKIPMRL-LVAASNELPEADS--SLEALYDRMLIRLWLDKVQD 184 (500)
T ss_dssp HHHHHHHH-------S--SEEECSSSEEECCCCE-EEEEESSCCCTTC--TTHHHHTTCCEEEECCSCCC
T ss_pred HHHHHHHH-------H--HhccCCCCcCCcchhh-hhhccccCCCccc--cHHHHHHHHHHHHHHHHhhh
Confidence 77655553 2 3566678888888776 56666741 1121 222444333 3355556765
No 54
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.00054 Score=85.37 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=81.3
Q ss_pred CCCCCCCchhHHHHHHHHh-cCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccCCc-------hhHH
Q psy12680 6 EGPAGTGKTETTKDLAKAV-AKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRIDV-------EVLS 70 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-G~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri~~-------~vLS 70 (2567)
.||+|||||.+++.+|+.+ |.+++..+|++-++ -+.+..+|.-+.. ..+-..|||++.+.. ++..
T Consensus 51 ~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 130 (322)
T ss_dssp ESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH
T ss_pred ECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH
Confidence 6999999999999999999 99999999998554 2445555543332 357889999999832 2333
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~ 144 (2567)
.+..++....+.+... ..++-++.|.|+- ..|++.|..-| +-+.+-.||.....+|+
T Consensus 131 ~~~~~ll~~ld~~~~~-------------~~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il 188 (322)
T 1xwi_A 131 RIKTEFLVQMQGVGVD-------------NDGILVLGATNIP----WVLDSAIRRRFEKRIYIPLPEPHARAAMF 188 (322)
T ss_dssp HHHHHHHHHHHCSSSC-------------CTTEEEEEEESCT----TTSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhccccc-------------CCCEEEEEecCCc----ccCCHHHHhhcCeEEEeCCcCHHHHHHHH
Confidence 3333332222222111 1233345566754 35788888777 77888999998777764
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.38 E-value=9.3e-05 Score=92.34 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=74.7
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhhhhcccCCcc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVY 1413 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~~ 1413 (2567)
+.|++|+||+|||||++++... +.+......++.++++.. ...+...+.. .....+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~------------------~~~~~~~~~~~~i~~~~~--~~~~~~~~~~----~~~~~~ 92 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAG------------------NEAKKRGYRVIYSSADDF--AQAMVEHLKK----GTINEF 92 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHH------------------HHHHHTTCCEEEEEHHHH--HHHHHHHHHH----TCHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH------------------HHHHHCCCEEEEEEHHHH--HHHHHHHHHc----CcHHHH
Confidence 3689999999999999886432 122111233444554322 1222222211 100011
Q ss_pred CCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhccc--
Q psy12680 1414 GPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHF-- 1491 (2567)
Q Consensus 1414 gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f-- 1491 (2567)
....++..|+|+||+..-..+....+....++..+.+.+. ..++++.++|..-..+.+++.+.|
T Consensus 93 ~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~--------------~iii~~~~~~~~l~~l~~~L~sR~~~ 158 (324)
T 1l8q_A 93 RNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK--------------QIILASDRHPQKLDGVSDRLVSRFEG 158 (324)
T ss_dssp HHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC--------------EEEEEESSCGGGCTTSCHHHHHHHHT
T ss_pred HHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCC--------------eEEEEecCChHHHHHhhhHhhhcccC
Confidence 1111224699999987633221111222233333332211 234455555544346789999888
Q ss_pred -cceeccCCCHHHHHHHHHHHHH
Q psy12680 1492 -NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1492 -~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.++.++. +.+....|+...+.
T Consensus 159 ~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 159 GILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp SEEEECCC-CHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CHHHHHHHHHHHHH
Confidence 5678888 99999888877664
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.33 E-value=0.00028 Score=89.95 Aligned_cols=147 Identities=14% Similarity=0.057 Sum_probs=91.2
Q ss_pred CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccc-cccceeeccccccCHHHHHHHHHhhhhcccCCccC
Q psy12680 1336 PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIE-QWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYG 1414 (2567)
Q Consensus 1336 pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~-~~~~~~lnfSa~Tts~~~q~~ies~lekr~~~~~g 1414 (2567)
+++++||+|||||++++.. .+.+... .+.++.+|++...++..+-..+...+..... .-|
T Consensus 46 ~~li~G~~G~GKTtl~~~l------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~ 106 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKL------------------WELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRG 106 (389)
T ss_dssp EEEEECCTTSSHHHHHHHH------------------HHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSC
T ss_pred eEEEECCCCCCHHHHHHHH------------------HHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCC
Confidence 6899999999999988642 2333333 4567788888887776655554444421100 000
Q ss_pred C--------------CCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC
Q psy12680 1415 P--------------PLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG 1480 (2567)
Q Consensus 1415 p--------------~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg 1480 (2567)
. ..++.+|+++||+..- .+..+..|..+++.. ... .-.++.++++++.+.-.
T Consensus 107 ~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l------~~~~~~~L~~~~~~~---~~~-----~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 107 LSRDEFLALLVEHLRERDLYMFLVLDDAFNL------APDILSTFIRLGQEA---DKL-----GAFRIALVIVGHNDAVL 172 (389)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEEEETGGGS------CHHHHHHHHHHTTCH---HHH-----SSCCEEEEEEESSTHHH
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEEECcccc------chHHHHHHHHHHHhC---CCC-----CcCCEEEEEEECCchHH
Confidence 0 1256789999997653 334555555555421 100 00246677777765322
Q ss_pred CCCCcchhcccc--ceeccCCCHHHHHHHHHHHHHhh
Q psy12680 1481 NTVTPRFSRHFN--QIVINKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1481 ~~is~Rf~r~f~--vi~i~~p~~~sL~~If~~il~~~ 1515 (2567)
..+.+++.+.|. ++.++.++.+.+..++...+...
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~ 209 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG 209 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh
Confidence 236778777777 58899999999999998877543
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=6.9e-05 Score=84.89 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=80.3
Q ss_pred CCCCCCCCchhHHHHHHHHh----------cCeEEEEeCCCCcc--------HHHHHHhhhhhhhc--CccccccccccC
Q psy12680 5 PEGPAGTGKTETTKDLAKAV----------AKLCIVFNCSDSMD--------YIGLGKFFKGLIAT--GAWACFDEFNRI 64 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l----------G~~~~vfNCs~~~d--------~~~m~rif~Gl~q~--GaW~CFDEfNri 64 (2567)
..||+|||||..++.+++.+ |.+++.++|++.+. ...+.+++..+... +...++||++++
T Consensus 48 l~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l 127 (195)
T 1jbk_A 48 LIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTM 127 (195)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGG
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHH
Confidence 36999999999999999998 89999999976542 12344455544333 457999999999
Q ss_pred C--------chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeC-CCCCCCCCchhhHhhccccccccCC
Q psy12680 65 D--------VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMN-PGYAGRSELPDNLKSLFRTVAMMVP 135 (2567)
Q Consensus 65 ~--------~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmN-PgYaGRseLPdnLk~lFRpvam~~P 135 (2567)
. .++...+-..+ .. .++.+.+|.| |.+....++++.|+.-|.++.+-.|
T Consensus 128 ~~~~~~~~~~~~~~~l~~~~-------~~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p 185 (195)
T 1jbk_A 128 VGAGKADGAMDAGNMLKPAL-------AR---------------GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEP 185 (195)
T ss_dssp TT------CCCCHHHHHHHH-------HT---------------TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCC
T ss_pred hccCcccchHHHHHHHHHhh-------cc---------------CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCC
Confidence 5 33333332222 11 1334455555 4455555788999999999999999
Q ss_pred CHHHHHHH
Q psy12680 136 DYALISEI 143 (2567)
Q Consensus 136 D~~lIaEi 143 (2567)
+..-..++
T Consensus 186 ~~~~~~~i 193 (195)
T 1jbk_A 186 SVEDTIAI 193 (195)
T ss_dssp CHHHHHTT
T ss_pred CHHHHHHH
Confidence 98766554
No 58
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.29 E-value=0.00015 Score=88.50 Aligned_cols=144 Identities=17% Similarity=0.253 Sum_probs=80.8
Q ss_pred hcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccC--HHHHHHHHHhhhhccc
Q psy12680 1332 THQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTS--ANQTQDIIMSKLDKRR 1409 (2567)
Q Consensus 1332 ~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tt--s~~~q~~ies~lekr~ 1409 (2567)
....+++|+||+|||||+++++... .+. ...+.++++.-.. .......+...++.-+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~------------------~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT------------------ETN---ATFIRVVGSELVKKFIGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH------------------HTT---CEEEEEEGGGGCCCSTTHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH------------------HhC---CCEEEEehHHHHHhccchHHHHHHHHHHHHH
Confidence 3567899999999999998865321 111 1122233322111 0111112221111111
Q ss_pred CCccCCCCCcEEEEEEcCCCCcccccc-----CCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCC
Q psy12680 1410 KGVYGPPLGKRCVVFVDDVNMPLKEEF-----GAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVT 1484 (2567)
Q Consensus 1410 ~~~~gp~~gK~~vvFiDDiNmP~~d~y-----GtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is 1484 (2567)
.++.+|+|+||++.-....- +.....+.+.++++.-..++.. .++.+++++|+|. .++
T Consensus 108 -------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~~~vI~ttn~~~---~l~ 170 (285)
T 3h4m_A 108 -------EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-------GDVKIIGATNRPD---ILD 170 (285)
T ss_dssp -------HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-------SSEEEEEECSCGG---GBC
T ss_pred -------HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-------CCEEEEEeCCCch---hcC
Confidence 11237999999976433222 2333445556665543323221 2577899999873 467
Q ss_pred cchhc--ccc-ceeccCCCHHHHHHHHHHHHH
Q psy12680 1485 PRFSR--HFN-QIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1485 ~Rf~r--~f~-vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+.+.| .|. ++.++.|+.+....|+...+.
T Consensus 171 ~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 77776 563 688999999999999986653
No 59
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.28 E-value=0.00041 Score=87.78 Aligned_cols=124 Identities=16% Similarity=0.169 Sum_probs=80.8
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccH------HHHHHhhhhhh-hcCccccccccccCCch--------hH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY------IGLGKFFKGLI-ATGAWACFDEFNRIDVE--------VL 69 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~------~~m~rif~Gl~-q~GaW~CFDEfNri~~~--------vL 69 (2567)
..||+|||||.+++.+|+.+|.+++.+||++-++. +.+..+|.-+. ..++-.++||++.|... ..
T Consensus 122 l~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 201 (357)
T 3d8b_A 122 LFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR 201 (357)
T ss_dssp EESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHH
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHH
Confidence 36999999999999999999999999999986542 22333343222 23578999999988432 23
Q ss_pred HHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccc-cccccCCCHHHHHHHHH
Q psy12680 70 SVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFR-TVAMMVPDYALISEIIV 145 (2567)
Q Consensus 70 Svvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFR-pvam~~PD~~lIaEi~L 145 (2567)
.++.+.+..+...... ....+-++.|.|+- ..|++.|+.-|. -+.+-.||.....+++-
T Consensus 202 ~~~~~lL~~l~~~~~~-------------~~~~v~vI~atn~~----~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~ 261 (357)
T 3d8b_A 202 RIKTEFLVQLDGATTS-------------SEDRILVVGATNRP----QEIDEAARRRLVKRLYIPLPEASARKQIVI 261 (357)
T ss_dssp HHHHHHHHHHHC-----------------CCCCEEEEEEESCG----GGBCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccc-------------CCCCEEEEEecCCh----hhCCHHHHhhCceEEEeCCcCHHHHHHHHH
Confidence 3334444433322111 11233455677762 357788877664 66788899988777753
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00049 Score=87.03 Aligned_cols=138 Identities=13% Similarity=0.171 Sum_probs=77.6
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccC------HHHHHHHHHhhhh
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTS------ANQTQDIIMSKLD 1406 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tt------s~~~q~~ies~le 1406 (2567)
..+++||+||||||||+++++.-. ++ ...++.++.|.-.+ ...+.++...
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~------------------e~---~~~f~~v~~s~l~sk~vGese~~vr~lF~~--- 236 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAH------------------HT---DCKFIRVSGAELVQKYIGEGSRMVRELFVM--- 236 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHH------------------HH---TCEEEEEEGGGGSCSSTTHHHHHHHHHHHH---
T ss_pred CCCceEEeCCCCCCHHHHHHHHHH------------------hh---CCCceEEEhHHhhccccchHHHHHHHHHHH---
Confidence 357899999999999999875321 11 11233344433222 2223332211
Q ss_pred cccCCccCCCCCcEEEEEEcCCCCcccccc--C---CCChHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCC
Q psy12680 1407 KRRKGVYGPPLGKRCVVFVDDVNMPLKEEF--G---AQPPIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTG 1480 (2567)
Q Consensus 1407 kr~~~~~gp~~gK~~vvFiDDiNmP~~d~y--G---tQ~~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg 1480 (2567)
-+ ....||+|+||+.--....- + .......+-|++.. .|+-. -.++-+++|.|.|.
T Consensus 237 -Ar-------~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--------~~~V~vIaATNrpd-- 298 (405)
T 4b4t_J 237 -AR-------EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--------SKNIKIIMATNRLD-- 298 (405)
T ss_dssp -HH-------HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--------CCCEEEEEEESCSS--
T ss_pred -HH-------HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--------CCCeEEEeccCChh--
Confidence 11 11248999999885443211 1 11122222333221 22222 13567889999774
Q ss_pred CCCCcchhc--cc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1481 NTVTPRFSR--HF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1481 ~~is~Rf~r--~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.++|-++| .| ..+.++.|+.+.-..||..+++
T Consensus 299 -~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 333 (405)
T 4b4t_J 299 -ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR 333 (405)
T ss_dssp -SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred -hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc
Confidence 46777775 34 5688999999999999976554
No 61
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.27 E-value=0.00022 Score=88.98 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=76.2
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccC--HHHHHHHHHhhhhcccCC
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTS--ANQTQDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tt--s~~~q~~ies~lekr~~~ 1411 (2567)
..++||+||+|||||+++++... .+ ...++.++++.-.+ .......+..-++.-+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~------------------~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-- 107 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT------------------EA---NSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR-- 107 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH------------------HH---TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHH--
T ss_pred CCeEEEECCCCCcHHHHHHHHHH------------------HH---CCCEEEEchHHHhhcccchHHHHHHHHHHHHH--
Confidence 35699999999999998865321 11 11233344432111 0111112211111111
Q ss_pred ccCCCCCcEEEEEEcCCCCcccccc--CCCC----hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCc
Q psy12680 1412 VYGPPLGKRCVVFVDDVNMPLKEEF--GAQP----PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTP 1485 (2567)
Q Consensus 1412 ~~gp~~gK~~vvFiDDiNmP~~d~y--GtQ~----~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~ 1485 (2567)
..+.+|+|+||++.-....- .... ..++|.++-... . .-.++.+++|.|.|. .+++
T Consensus 108 -----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---~-------~~~~v~vi~atn~~~---~ld~ 169 (322)
T 3eie_A 108 -----ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG---N-------DSQGVLVLGATNIPW---QLDS 169 (322)
T ss_dssp -----HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG---T-------SCCCEEEEEEESCGG---GSCH
T ss_pred -----hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc---c-------cCCceEEEEecCChh---hCCH
Confidence 12347999999984332211 1111 233444442211 1 112477889998874 3778
Q ss_pred chhccc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1486 RFSRHF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1486 Rf~r~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.|.| ..+.++.|+.+....|+..++.
T Consensus 170 al~~Rf~~~i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 170 AIRRRFERRIYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp HHHHHCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred HHHcccCeEEEeCCCCHHHHHHHHHHHhc
Confidence 888877 4678999999999999987664
No 62
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.26 E-value=5.3e-05 Score=96.14 Aligned_cols=152 Identities=18% Similarity=0.340 Sum_probs=82.4
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHH----HHHHHhhhhccc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQT----QDIIMSKLDKRR 1409 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~----q~~ies~lekr~ 1409 (2567)
+.+++|+||||||||++++..- +.+ ...++.++++..+.+.-+ ...+...++...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia------------------~~~---~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~ 109 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLA------------------RLL---DVPFTMADATTLTEAGYVGEDVENIIQKLLQKCD 109 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH------------------HHT---TCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHH------------------HHc---CCCEEEechHHhcccccccccHHHHHHHHHHHhh
Confidence 5789999999999998886421 111 223455666655543211 122222222111
Q ss_pred CCccCCCCCcEEEEEEcCCC-CccccccC-------CCChHHHHHHHhhcccccc----------cCcceeeeeeeeeee
Q psy12680 1410 KGVYGPPLGKRCVVFVDDVN-MPLKEEFG-------AQPPIEILRQWLDHWMWYD----------RKDVVAVKLIEIQLM 1471 (2567)
Q Consensus 1410 ~~~~gp~~gK~~vvFiDDiN-mP~~d~yG-------tQ~~ielLRQlid~~g~yd----------r~~~~~~~i~diq~v 1471 (2567)
+ .+ .....+|+|+|+++ |+....-+ ...+...|.+++| |.... ..+...+.-.++.|+
T Consensus 110 ~-~~--~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i 185 (363)
T 3hws_A 110 Y-DV--QKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFI 185 (363)
T ss_dssp T-CH--HHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEE
T ss_pred h-hH--HhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEE
Confidence 1 10 01234699999998 54331110 0116777888888 43321 111122223455666
Q ss_pred eecCCCC----------C----CC----------------------------CCCcchhcccccee-ccCCCHHHHHHHH
Q psy12680 1472 CAMGPPS----------T----GN----------------------------TVTPRFSRHFNQIV-INKFDDDTMVTIF 1508 (2567)
Q Consensus 1472 ~am~Ppg----------g----g~----------------------------~is~Rf~r~f~vi~-i~~p~~~sL~~If 1508 (2567)
++.+..+ . |. .+.|.|...|.++. +++|+.+.+..|.
T Consensus 186 ~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~ 265 (363)
T 3hws_A 186 CGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQIL 265 (363)
T ss_dssp EEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred ecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHH
Confidence 6665431 0 00 05677888888877 6899999999998
Q ss_pred HH
Q psy12680 1509 SK 1510 (2567)
Q Consensus 1509 ~~ 1510 (2567)
..
T Consensus 266 ~~ 267 (363)
T 3hws_A 266 KE 267 (363)
T ss_dssp HS
T ss_pred HH
Confidence 75
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.25 E-value=0.0002 Score=84.63 Aligned_cols=140 Identities=13% Similarity=0.192 Sum_probs=77.3
Q ss_pred HHHHHh--cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhh
Q psy12680 1327 MKLLVT--HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSK 1404 (2567)
Q Consensus 1327 l~~ll~--~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~ 1404 (2567)
+..+.. .+.+++++||+|||||++++... +.+....+.+..++++..... + ...
T Consensus 43 l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~------------------~~~~~~~~~~~~~~~~~~~~~--~----~~~ 98 (242)
T 3bos_A 43 LKSAASGDGVQAIYLWGPVKSGRTHLIHAAC------------------ARANELERRSFYIPLGIHASI--S----TAL 98 (242)
T ss_dssp HHHHHHTCSCSEEEEECSTTSSHHHHHHHHH------------------HHHHHTTCCEEEEEGGGGGGS--C----GGG
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHH------------------HHHHHcCCeEEEEEHHHHHHH--H----HHH
Confidence 344444 47899999999999998886422 222222233444454432211 0 000
Q ss_pred hhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC-CCCC
Q psy12680 1405 LDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST-GNTV 1483 (2567)
Q Consensus 1405 lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg-g~~i 1483 (2567)
+ ...++..++++||++.-..+..+ .+.|..+++.. ++.. .+.++.+++.+.. -...
T Consensus 99 ~---------~~~~~~~vliiDe~~~~~~~~~~----~~~l~~~l~~~--~~~~--------~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 99 L---------EGLEQFDLICIDDVDAVAGHPLW----EEAIFDLYNRV--AEQK--------RGSLIVSASASPMEAGFV 155 (242)
T ss_dssp G---------TTGGGSSEEEEETGGGGTTCHHH----HHHHHHHHHHH--HHHC--------SCEEEEEESSCTTTTTCC
T ss_pred H---------HhccCCCEEEEeccccccCCHHH----HHHHHHHHHHH--HHcC--------CCeEEEEcCCCHHHHHHh
Confidence 1 11234568999998754332211 33344443321 1110 1124444443332 2345
Q ss_pred Ccchhccc---cceeccCCCHHHHHHHHHHHHH
Q psy12680 1484 TPRFSRHF---NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1484 s~Rf~r~f---~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+++.+.| .++.++.|+.+.+..|+...+.
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 58888888 7899999999999999887664
No 64
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.23 E-value=0.00052 Score=86.73 Aligned_cols=123 Identities=19% Similarity=0.229 Sum_probs=80.6
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccCCch-------hHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRIDVE-------VLS 70 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri~~~-------vLS 70 (2567)
..||+|||||.+++.+|+.+|.+++.+||++-++ -+.+..+|.-+.. .++-.++||++.|... +..
T Consensus 89 L~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~ 168 (355)
T 2qp9_X 89 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 168 (355)
T ss_dssp EECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHH
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHH
Confidence 3799999999999999999999999999986332 2344445543322 4678999999999753 333
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~ 144 (2567)
.+..++....+.+... ...+-|+.|.|.- ..|++.|..-| +-+.+-.||.....+|+
T Consensus 169 ~~~~~ll~~l~~~~~~-------------~~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il 226 (355)
T 2qp9_X 169 RIKTELLVQMNGVGND-------------SQGVLVLGATNIP----WQLDSAIRRRFERRIYIPLPDLAARTTMF 226 (355)
T ss_dssp HHHHHHHHHHHHCC----------------CCEEEEEEESCG----GGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhccccc-------------CCCeEEEeecCCc----ccCCHHHHcccCEEEEeCCcCHHHHHHHH
Confidence 3333333222222111 1233455677753 25777777767 77888899998877775
No 65
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.22 E-value=9.7e-05 Score=83.51 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=75.3
Q ss_pred CCCCCCCCchhHHHHHHHHh----------cCeEEEEeCCCCccH--------HHHHHhhhhhhhc--CccccccccccC
Q psy12680 5 PEGPAGTGKTETTKDLAKAV----------AKLCIVFNCSDSMDY--------IGLGKFFKGLIAT--GAWACFDEFNRI 64 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l----------G~~~~vfNCs~~~d~--------~~m~rif~Gl~q~--GaW~CFDEfNri 64 (2567)
..||+|||||.+++.+++.+ +.+++..+|+.-+.. ..+.+++.-+... +...++||++++
T Consensus 48 l~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l 127 (187)
T 2p65_A 48 LLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTV 127 (187)
T ss_dssp EESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGG
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHh
Confidence 36999999999999999998 889999998764321 1245555555544 568899999999
Q ss_pred C---------chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCC-CCCCCCCchhhHhhccccccccC
Q psy12680 65 D---------VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNP-GYAGRSELPDNLKSLFRTVAMMV 134 (2567)
Q Consensus 65 ~---------~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNP-gYaGRseLPdnLk~lFRpvam~~ 134 (2567)
. .+++..+...+. . ..+-+..|.|+ .+....++++.|+.-|..|.+-.
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~-------~---------------~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~ 185 (187)
T 2p65_A 128 VGAGAVAEGALDAGNILKPMLA-------R---------------GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQ 185 (187)
T ss_dssp SSSSSSCTTSCCTHHHHHHHHH-------T---------------TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCS
T ss_pred cccccccccchHHHHHHHHHHh-------c---------------CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCC
Confidence 7 444443333221 1 23345666664 33333467888999999888888
Q ss_pred CC
Q psy12680 135 PD 136 (2567)
Q Consensus 135 PD 136 (2567)
||
T Consensus 186 p~ 187 (187)
T 2p65_A 186 PS 187 (187)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 66
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.15 E-value=0.0009 Score=80.37 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=71.4
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc------CHHHHHHHHHhhhh
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT------SANQTQDIIMSKLD 1406 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T------ts~~~q~~ies~le 1406 (2567)
...+++|+||+|||||++++.... .+. ...+.++++... +...+..+++....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 96 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT------------------EAQ---VPFLAMAGAEFVEVIGGLGAARVRSLFKEARA 96 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH------------------HHT---CCEEEEETTTTSSSSTTHHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH------------------HhC---CCEEEechHHHHhhccChhHHHHHHHHHHHHh
Confidence 356899999999999998864321 111 122333443221 12223332222111
Q ss_pred cccCCccCCCCCcEEEEEEcCCCCccccccC------CCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC
Q psy12680 1407 KRRKGVYGPPLGKRCVVFVDDVNMPLKEEFG------AQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG 1480 (2567)
Q Consensus 1407 kr~~~~~gp~~gK~~vvFiDDiNmP~~d~yG------tQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg 1480 (2567)
...+|+|+||++.-....-. .......|.++++. .+... .-.++.++++.|.+.
T Consensus 97 -----------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~~----~~~~~~vi~~tn~~~-- 156 (262)
T 2qz4_A 97 -----------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE---MDGMG----TTDHVIVLASTNRAD-- 156 (262)
T ss_dssp -----------TCSEEEEEECC-------------------CHHHHHHHHH---HHTCC----TTCCEEEEEEESCGG--
T ss_pred -----------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHH---hhCcC----CCCCEEEEecCCChh--
Confidence 12479999999854322111 11112233333331 11100 012567888888764
Q ss_pred CCCCcchhc--cc-cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1481 NTVTPRFSR--HF-NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1481 ~~is~Rf~r--~f-~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.+++.+.| .| ..+.++.|+.+....|+..++..
T Consensus 157 -~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 157 -ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp -GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred -hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 34556665 55 46778999999999988876643
No 67
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.0005 Score=86.41 Aligned_cols=151 Identities=12% Similarity=0.137 Sum_probs=89.6
Q ss_pred HHHHHhcC--CCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhh
Q psy12680 1327 MKLLVTHQ--KPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSK 1404 (2567)
Q Consensus 1327 l~~ll~~~--~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~ 1404 (2567)
+..++..+ .+++|+||+|||||++++.....+.. -......+..+|.+..+....+.+.+...
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG---------------PDLMKSRILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH---------------HHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC---------------CcccccceEEEccccccchHHHHHHHHHH
Confidence 44455555 56999999999999988643211100 00112345566777655555555444332
Q ss_pred hhcccCCc-----cCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1405 LDKRRKGV-----YGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1405 lekr~~~~-----~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
........ .+.+.++..|+|+||++.-..+ ....|+.+++... .++.++.++|.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~------~~~~Ll~~le~~~------------~~~~~il~~~~~~- 174 (353)
T 1sxj_D 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD------AQSALRRTMETYS------------GVTRFCLICNYVT- 174 (353)
T ss_dssp HHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH------HHHHHHHHHHHTT------------TTEEEEEEESCGG-
T ss_pred hhhcccccchhhcccCCCCCceEEEEECCCccCHH------HHHHHHHHHHhcC------------CCceEEEEeCchh-
Confidence 22111000 0223456689999998754332 2344555665421 1344566666553
Q ss_pred CCCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1480 GNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1480 g~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+++.+.+.++.++.|+.+.+..+...++.
T Consensus 175 --~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 175 --RIIDPLASQCSKFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp --GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred --hCcchhhccCceEEeCCCCHHHHHHHHHHHHH
Confidence 47788888899999999999999988877653
No 68
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.00079 Score=84.61 Aligned_cols=116 Identities=20% Similarity=0.168 Sum_probs=83.3
Q ss_pred CCCCCCCchhHHHHHHHHhcC------eEEEEeCCCCccHHHHHHhhhhhhhc-----------------Cccccccccc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAK------LCIVFNCSDSMDYIGLGKFFKGLIAT-----------------GAWACFDEFN 62 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~------~~~vfNCs~~~d~~~m~rif~Gl~q~-----------------GaW~CFDEfN 62 (2567)
.||+|||||.+++.+++.++. .++-+||++......+...+.+.... +.-.++||++
T Consensus 64 ~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~ 143 (353)
T 1sxj_D 64 YGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEAD 143 (353)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGG
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCC
Confidence 799999999999999999874 48889999976666666655555442 2256899999
Q ss_pred cCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHH
Q psy12680 63 RIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISE 142 (2567)
Q Consensus 63 ri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaE 142 (2567)
+++.+..+.+-..+.... +++.+.++.|+. ..+++.|++-|..+.+-.|+..-+.+
T Consensus 144 ~l~~~~~~~Ll~~le~~~--------------------~~~~~il~~~~~----~~l~~~l~sR~~~i~~~~~~~~~~~~ 199 (353)
T 1sxj_D 144 SMTADAQSALRRTMETYS--------------------GVTRFCLICNYV----TRIIDPLASQCSKFRFKALDASNAID 199 (353)
T ss_dssp GSCHHHHHHHHHHHHHTT--------------------TTEEEEEEESCG----GGSCHHHHHHSEEEECCCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC--------------------CCceEEEEeCch----hhCcchhhccCceEEeCCCCHHHHHH
Confidence 999887766555444321 122334444532 35888888888888888899887777
Q ss_pred HHH
Q psy12680 143 IIV 145 (2567)
Q Consensus 143 i~L 145 (2567)
++.
T Consensus 200 ~l~ 202 (353)
T 1sxj_D 200 RLR 202 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 69
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.12 E-value=0.00042 Score=85.20 Aligned_cols=127 Identities=11% Similarity=0.016 Sum_probs=70.9
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccH------HHHHHhhhhh-----hhcCccccccccccCCch-------
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY------IGLGKFFKGL-----IATGAWACFDEFNRIDVE------- 67 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~------~~m~rif~Gl-----~q~GaW~CFDEfNri~~~------- 67 (2567)
.||+|||||.+++.+|+.+|.+++.++|++-.+- ..+.+.|.-. ...++-.++||+..+...
T Consensus 42 ~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~ 121 (293)
T 3t15_A 42 WGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY 121 (293)
T ss_dssp EECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC------------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccc
Confidence 5999999999999999999999999999874331 2233344333 235688899999877651
Q ss_pred ------hHHHHHHHHHhhhhhhhcCCceEEEcCeE-EEeeCceeEEEEeCCCCCCCCCchhhHhhcccc-ccccCCCHHH
Q psy12680 68 ------VLSVVAQQILTIQRGVTLGEEEILFEGTI-LKLDRTCSVFITMNPGYAGRSELPDNLKSLFRT-VAMMVPDYAL 139 (2567)
Q Consensus 68 ------vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~-i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRp-vam~~PD~~l 139 (2567)
+.+.+-+.+. +.....++|.. ..-..++-|++|-|.- ..||+.|..-.|- ..+..||..-
T Consensus 122 ~~~~~~v~~~Ll~~ld--------~~~~~~~~~~~~~~~~~~v~vI~ttN~~----~~ld~al~R~~R~d~~i~~P~~~~ 189 (293)
T 3t15_A 122 TVNNQMVNATLMNIAD--------NPTNVQLPGMYNKQENARVPIIVTGNDF----STLYAPLIRDGRMEKFYWAPTRED 189 (293)
T ss_dssp --CHHHHHHHHHHHHH--------CCC-----------CCCCCCEEEECSSC----CC--CHHHHHHHEEEEEECCCHHH
T ss_pred cchHHHHHHHHHHHhc--------cccccccccccccccCCCcEEEEecCCc----ccCCHHHhCCCCCceeEeCcCHHH
Confidence 2222222221 11222223321 1223456788888843 3577777632221 1224799988
Q ss_pred HHHHH
Q psy12680 140 ISEII 144 (2567)
Q Consensus 140 IaEi~ 144 (2567)
..+|+
T Consensus 190 r~~Il 194 (293)
T 3t15_A 190 RIGVC 194 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87774
No 70
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.11 E-value=0.00079 Score=83.92 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhhc-CccccccccccCCchh-------HHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIAT-GAWACFDEFNRIDVEV-------LSV 71 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q~-GaW~CFDEfNri~~~v-------LSv 71 (2567)
.||+|||||.+++.+|+.+|.+++.+||++-+. .+.+..+|.-+... ++-.++||++.|...- +..
T Consensus 57 ~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 136 (322)
T 3eie_A 57 YGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRR 136 (322)
T ss_dssp ECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHH
T ss_pred ECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHH
Confidence 699999999999999999999999999986432 23344455433332 3678899999996532 222
Q ss_pred HHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHH
Q psy12680 72 VAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 72 vaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~ 144 (2567)
+..++......+..... .+-|..|-|+- ..|++.|..-| +-+.+-.||.....+|+
T Consensus 137 ~~~~ll~~l~~~~~~~~-------------~v~vi~atn~~----~~ld~al~~Rf~~~i~~~~p~~~~r~~il 193 (322)
T 3eie_A 137 IKTELLVQMNGVGNDSQ-------------GVLVLGATNIP----WQLDSAIRRRFERRIYIPLPDLAARTTMF 193 (322)
T ss_dssp HHHHHHHHHGGGGTSCC-------------CEEEEEEESCG----GGSCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHhccccccCC-------------ceEEEEecCCh----hhCCHHHHcccCeEEEeCCCCHHHHHHHH
Confidence 32333222222221111 22334466743 24788888877 56778889998887775
No 71
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.00035 Score=86.73 Aligned_cols=142 Identities=16% Similarity=0.223 Sum_probs=86.8
Q ss_pred HHHHHhcCC--CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccc--cccceeeccccccCHHHHHHHHH
Q psy12680 1327 MKLLVTHQK--PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIE--QWQPLIMNFSAQTSANQTQDIIM 1402 (2567)
Q Consensus 1327 l~~ll~~~~--pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~--~~~~~~lnfSa~Tts~~~q~~ie 1402 (2567)
+..++..+. +++++||+|||||++++.... .+... ....+.++.+..+....+...+.
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALAR------------------ELFGENWRHNFLELNASDERGINVIREKVK 98 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH------------------HHHGGGHHHHEEEEETTCHHHHHTTHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH------------------HhcCCcccCceEEeeccccCchHHHHHHHH
Confidence 344555554 699999999999998864321 11111 12244556655444444444333
Q ss_pred hhhhcccCCccCCCC-CcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1403 SKLDKRRKGVYGPPL-GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1403 s~lekr~~~~~gp~~-gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
.... .+|.. +++.|+++||++.-..+ ..+.|+.+++... .++.++.+++.+.
T Consensus 99 ~~~~------~~~~~~~~~~vliiDe~~~l~~~------~~~~L~~~le~~~------------~~~~~i~~~~~~~--- 151 (327)
T 1iqp_A 99 EFAR------TKPIGGASFKIIFLDEADALTQD------AQQALRRTMEMFS------------SNVRFILSCNYSS--- 151 (327)
T ss_dssp HHHH------SCCGGGCSCEEEEEETGGGSCHH------HHHHHHHHHHHTT------------TTEEEEEEESCGG---
T ss_pred HHHh------hCCcCCCCCeEEEEeCCCcCCHH------HHHHHHHHHHhcC------------CCCeEEEEeCCcc---
Confidence 2221 13333 56789999998754332 3455666666421 1345677776543
Q ss_pred CCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1482 TVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1482 ~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+.+.+.+.++.++.++.+.+..++..++.
T Consensus 152 ~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 152 KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 46778888888999999999999988877653
No 72
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.10 E-value=0.00069 Score=86.29 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=44.3
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHH----HHHHhhhhh---------hhcCccccccccccCCch
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYI----GLGKFFKGL---------IATGAWACFDEFNRIDVE 67 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~----~m~rif~Gl---------~q~GaW~CFDEfNri~~~ 67 (2567)
.||+|||||++++.+|+.+|.+++.++|+.-.... .....+.++ ...|...++||++++..+
T Consensus 78 ~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 78 IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence 69999999999999999999999999998743221 112223332 125788899999999887
No 73
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.00063 Score=84.23 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=89.1
Q ss_pred HHHHHhcCC--CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhcc--ccccceeeccccccCHHHHHHHHH
Q psy12680 1327 MKLLVTHQK--PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSI--EQWQPLIMNFSAQTSANQTQDIIM 1402 (2567)
Q Consensus 1327 l~~ll~~~~--pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~--~~~~~~~lnfSa~Tts~~~q~~ie 1402 (2567)
+..++..+. +++|+||+|||||++++... +.+.. .....+.++.+...+...+.+.++
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~------------------~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 94 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLA------------------HELLGRSYADGVLELNASDDRGIDVVRNQIK 94 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHH------------------HHHHGGGHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHH------------------HHhcCCcccCCEEEecCccccChHHHHHHHH
Confidence 445555554 48999999999998886422 11111 112345566666555566666554
Q ss_pred hhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCC
Q psy12680 1403 SKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNT 1482 (2567)
Q Consensus 1403 s~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~ 1482 (2567)
.-...+. +.+.+++.||++||++.-..+ ..+.|+.+++... .++.++.+++++ ..
T Consensus 95 ~~~~~~~----~~~~~~~~viiiDe~~~l~~~------~~~~L~~~le~~~------------~~~~~il~~~~~---~~ 149 (323)
T 1sxj_B 95 HFAQKKL----HLPPGKHKIVILDEADSMTAG------AQQALRRTMELYS------------NSTRFAFACNQS---NK 149 (323)
T ss_dssp HHHHBCC----CCCTTCCEEEEEESGGGSCHH------HHHTTHHHHHHTT------------TTEEEEEEESCG---GG
T ss_pred HHHhccc----cCCCCCceEEEEECcccCCHH------HHHHHHHHHhccC------------CCceEEEEeCCh---hh
Confidence 3322111 112466889999998753322 2344555665421 234566666654 24
Q ss_pred CCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1483 VTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1483 is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+.+.+.+.+.++.++.|+.+.+..++..++.
T Consensus 150 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 150 IIEPLQSQCAILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhHHHhhceEEeecCCCHHHHHHHHHHHHH
Confidence 6788888888999999999999998887664
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.09 E-value=0.00036 Score=85.79 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=47.5
Q ss_pred CcEEEEEEcCCCCccccccCC-------CChHHHHHHHhhcccccccCcc-eeeeeeeeeeeeecCCCCCCCCCCcchhc
Q psy12680 1418 GKRCVVFVDDVNMPLKEEFGA-------QPPIEILRQWLDHWMWYDRKDV-VAVKLIEIQLMCAMGPPSTGNTVTPRFSR 1489 (2567)
Q Consensus 1418 gK~~vvFiDDiNmP~~d~yGt-------Q~~ielLRQlid~~g~ydr~~~-~~~~i~diq~v~am~Ppggg~~is~Rf~r 1489 (2567)
++.+|+|+||+.--....-|. +.+...|-+++|...+...... ......++.+++|.|.+. .+++.++|
T Consensus 98 ~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~---~ld~al~R 174 (293)
T 3t15_A 98 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS---TLYAPLIR 174 (293)
T ss_dssp SSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC---C--CHHHH
T ss_pred CCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc---cCCHHHhC
Confidence 345899999996543322222 2355777778774332211100 112234688999999764 46677775
Q ss_pred --cccceeccCCCHHHHHHHHHHHH
Q psy12680 1490 --HFNQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1490 --~f~vi~i~~p~~~sL~~If~~il 1512 (2567)
.|.... ..|+.+....|+..++
T Consensus 175 ~~R~d~~i-~~P~~~~r~~Il~~~~ 198 (293)
T 3t15_A 175 DGRMEKFY-WAPTREDRIGVCTGIF 198 (293)
T ss_dssp HHHEEEEE-ECCCHHHHHHHHHHHH
T ss_pred CCCCceeE-eCcCHHHHHHHHHHhc
Confidence 343322 2579999999987654
No 75
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.09 E-value=0.00088 Score=87.23 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=77.9
Q ss_pred CCCCCCCchhHHHHHHHHh-cCeEEEEeCCCCccH------HHHHHhhhhhhh-cCccccccccccCCc-------hhHH
Q psy12680 6 EGPAGTGKTETTKDLAKAV-AKLCIVFNCSDSMDY------IGLGKFFKGLIA-TGAWACFDEFNRIDV-------EVLS 70 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-G~~~~vfNCs~~~d~------~~m~rif~Gl~q-~GaW~CFDEfNri~~-------~vLS 70 (2567)
.||+|||||.+++.+|+.+ |.+++.++|++-++. +.+..+|.-+.. ..+-.+|||++.+.. ++..
T Consensus 173 ~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 252 (444)
T 2zan_A 173 FGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 252 (444)
T ss_dssp ECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGH
T ss_pred ECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHH
Confidence 6999999999999999999 999999999986542 234445543322 357889999999832 3333
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~ 144 (2567)
.+..++....+.+... ..++-|+.|.|+- ..|++.|..-| +-+.+-.||.....+|+
T Consensus 253 ~~~~~lL~~l~~~~~~-------------~~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il 310 (444)
T 2zan_A 253 RIKTEFLVQMQGVGVD-------------NDGILVLGATNIP----WVLDSAIRRRFEKRIYIPLPEAHARAAMF 310 (444)
T ss_dssp HHHHHHHTTTTCSSCC-------------CSSCEEEEEESCG----GGSCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccC-------------CCCEEEEecCCCc----cccCHHHHhhcceEEEeCCcCHHHHHHHH
Confidence 3333333222221110 1234456677754 35778887777 57788889998777764
No 76
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0012 Score=84.87 Aligned_cols=139 Identities=20% Similarity=0.297 Sum_probs=76.4
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCH--HHHHHHHHhhhhcccCC
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSA--NQTQDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts--~~~q~~ies~lekr~~~ 1411 (2567)
.+++||+||||||||+++++.-. ++ ...++.++.|.-.+. ......+..-+..-+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~------------------e~---~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~-- 271 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA------------------TI---GANFIFSPASGIVDKYIGESARIIREMFAYAK-- 271 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH------------------HH---TCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH--
T ss_pred CCeEEEECCCCCcHHHHHHHHHH------------------Hh---CCCEEEEehhhhccccchHHHHHHHHHHHHHH--
Confidence 47899999999999999875321 11 112333443332210 011111111111110
Q ss_pred ccCCCCCcEEEEEEcCCCCcccccc--CC---CCh----HHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCC
Q psy12680 1412 VYGPPLGKRCVVFVDDVNMPLKEEF--GA---QPP----IEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNT 1482 (2567)
Q Consensus 1412 ~~gp~~gK~~vvFiDDiNmP~~d~y--Gt---Q~~----ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~ 1482 (2567)
....||+|+||+.--..... |. ... .+||.++ .|+-.. .++-+++|.|.|. .
T Consensus 272 -----~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l---Dg~~~~--------~~vivI~ATNrp~---~ 332 (437)
T 4b4t_L 272 -----EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQM---DGFDNL--------GQTKIIMATNRPD---T 332 (437)
T ss_dssp -----HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHH---HSSSCT--------TSSEEEEEESSTT---S
T ss_pred -----hcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHh---hcccCC--------CCeEEEEecCCch---h
Confidence 12349999999986544322 11 112 2344333 222221 2456788888774 3
Q ss_pred CCcchhcc--c-cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1483 VTPRFSRH--F-NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1483 is~Rf~r~--f-~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
++|-++|- | ..|.++.|+.+.-..||..++..
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 56666653 3 35778999999999999876654
No 77
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.00084 Score=83.14 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=85.0
Q ss_pred CCCCCCCchhHHHHHHHHh-----cCeEEEEeCCCCccHHHHHHhhhhhh-------hc-CccccccccccCCchhHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAV-----AKLCIVFNCSDSMDYIGLGKFFKGLI-------AT-GAWACFDEFNRIDVEVLSVV 72 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-----G~~~~vfNCs~~~d~~~m~rif~Gl~-------q~-GaW~CFDEfNri~~~vLSvv 72 (2567)
.||+|||||.+++.+++.+ +..++.+||++......+..++..+. .+ ....++||++++..+....+
T Consensus 48 ~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L 127 (323)
T 1sxj_B 48 SGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQAL 127 (323)
T ss_dssp ECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTT
T ss_pred ECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHH
Confidence 6999999999999999997 45688899999877777777776554 22 45788999999988654443
Q ss_pred HHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 73 AQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 73 aqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
...+. .. .+++-+.+|.|+ ...+++.|++-++.+.+-.|+..-+.+++-
T Consensus 128 ~~~le-------~~-------------~~~~~~il~~~~----~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 176 (323)
T 1sxj_B 128 RRTME-------LY-------------SNSTRFAFACNQ----SNKIIEPLQSQCAILRYSKLSDEDVLKRLL 176 (323)
T ss_dssp HHHHH-------HT-------------TTTEEEEEEESC----GGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HHHHh-------cc-------------CCCceEEEEeCC----hhhchhHHHhhceEEeecCCCHHHHHHHHH
Confidence 33332 11 123334445564 346888899989999999999988877753
No 78
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.0014 Score=87.15 Aligned_cols=118 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhh-------------------hcCccccccccccCCc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLI-------------------ATGAWACFDEFNRIDV 66 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~-------------------q~GaW~CFDEfNri~~ 66 (2567)
.||+|||||.+++.+|+.+|..++.+||++......+...+.+.. ..+.-..+||+..+..
T Consensus 83 ~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 83 YGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp ECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch
Confidence 599999999999999999999999999999877665555444321 2345668999999987
Q ss_pred hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 67 EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 67 ~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+....+......+.. . .+.+.++.|..+. ..||. |......+.+-.|+..-+.+++.
T Consensus 163 ~~~~~l~~L~~~l~~----~---------------~~~iIli~~~~~~--~~l~~-l~~r~~~i~f~~~~~~~~~~~L~ 219 (516)
T 1sxj_A 163 GDRGGVGQLAQFCRK----T---------------STPLILICNERNL--PKMRP-FDRVCLDIQFRRPDANSIKSRLM 219 (516)
T ss_dssp TSTTHHHHHHHHHHH----C---------------SSCEEEEESCTTS--STTGG-GTTTSEEEECCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh----c---------------CCCEEEEEcCCCC--ccchh-hHhceEEEEeCCCCHHHHHHHHH
Confidence 654433333322221 1 2234555564332 23443 55555567888899998888864
No 79
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.02 E-value=0.00089 Score=86.99 Aligned_cols=138 Identities=14% Similarity=0.240 Sum_probs=80.9
Q ss_pred HHHHHhcCC--CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHHhh
Q psy12680 1327 MKLLVTHQK--PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSK 1404 (2567)
Q Consensus 1327 l~~ll~~~~--pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ies~ 1404 (2567)
+..++..+. +++|+||+|||||++++... +.+. .....++.+. .....+...++..
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia------------------~~~~---~~f~~l~a~~-~~~~~ir~~~~~a 98 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIA------------------RYAN---ADVERISAVT-SGVKEIREAIERA 98 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHH------------------HHTT---CEEEEEETTT-CCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHH------------------HHhC---CCeEEEEecc-CCHHHHHHHHHHH
Confidence 344454454 59999999999999886421 1111 1223334332 2234455554432
Q ss_pred hhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCC
Q psy12680 1405 LDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVT 1484 (2567)
Q Consensus 1405 lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is 1484 (2567)
.... ..++..|+|+||++.-..+. | -.|| ..++.+. +.+++|.+.+.. ..+.
T Consensus 99 ~~~~-------~~~~~~iLfIDEI~~l~~~~---q--~~LL-~~le~~~--------------v~lI~att~n~~-~~l~ 150 (447)
T 3pvs_A 99 RQNR-------NAGRRTILFVDEVHRFNKSQ---Q--DAFL-PHIEDGT--------------ITFIGATTENPS-FELN 150 (447)
T ss_dssp HHHH-------HTTCCEEEEEETTTCC-----------CCH-HHHHTTS--------------CEEEEEESSCGG-GSSC
T ss_pred HHhh-------hcCCCcEEEEeChhhhCHHH---H--HHHH-HHHhcCc--------------eEEEecCCCCcc-cccC
Confidence 2221 14567899999997643331 1 1233 3444321 456665532111 3577
Q ss_pred cchhccccceeccCCCHHHHHHHHHHHHHh
Q psy12680 1485 PRFSRHFNQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1485 ~Rf~r~f~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
+.+.+.+.++.+..|+.+.+..|....+..
T Consensus 151 ~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 151 SALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp HHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred HHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 889999999999999999999999887754
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.01 E-value=0.00017 Score=78.93 Aligned_cols=108 Identities=10% Similarity=0.093 Sum_probs=70.7
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhhhhc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTL 85 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~ 85 (2567)
.||+|||||..++.+++..+ +++.+||++-.+.. +..+|. .+. |.-.++||+++++.++...+.+.+..-.
T Consensus 33 ~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-~~~~~~-~a~-~~~l~lDei~~l~~~~q~~Ll~~l~~~~----- 103 (143)
T 3co5_A 33 TGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-PMELLQ-KAE-GGVLYVGDIAQYSRNIQTGITFIIGKAE----- 103 (143)
T ss_dssp EEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-HHHHHH-HTT-TSEEEEEECTTCCHHHHHHHHHHHHHHT-----
T ss_pred ECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-hhhHHH-hCC-CCeEEEeChHHCCHHHHHHHHHHHHhCC-----
Confidence 59999999999999999888 99999999743321 111221 233 4567999999999988776655444311
Q ss_pred CCceEEEcCeEEEeeCceeEEEEeCCCCCC-CCCchhhHhhccccccccCCC
Q psy12680 86 GEEEILFEGTILKLDRTCSVFITMNPGYAG-RSELPDNLKSLFRTVAMMVPD 136 (2567)
Q Consensus 86 ~~~~~~f~g~~i~l~~~~~iFiTmNPgYaG-RseLPdnLk~lFRpvam~~PD 136 (2567)
..++.+.+|.|..... +..+.+.|-.-|-.+.+.+|.
T Consensus 104 --------------~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 104 --------------RCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp --------------TTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred --------------CCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 3445677788754321 111555666555666666665
No 81
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00076 Score=86.44 Aligned_cols=135 Identities=21% Similarity=0.306 Sum_probs=76.0
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc------CHHHHHHHHHhhhhc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT------SANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T------ts~~~q~~ies~lek 1407 (2567)
.+++||+||||||||+++++.- +++ ...++.++.|.-. +...+.++....
T Consensus 206 prGiLL~GPPGtGKT~lakAiA------------------~~~---~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A--- 261 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVA------------------NST---KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA--- 261 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH------------------HHH---TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHH---
T ss_pred CceEEEECCCCCCHHHHHHHHH------------------HHh---CCCeEEEecchhhccccchhHHHHHHHHHHH---
Confidence 4669999999999999987532 111 1223334443321 222333332211
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCcccccc-----CCCC----hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCC
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPLKEEF-----GAQP----PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPS 1478 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~~d~y-----GtQ~----~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppg 1478 (2567)
+ ....||+|+|++.--..... +... ..+||.++= |+... .++-+++|.|.|.
T Consensus 262 -~-------~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld---g~~~~--------~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 262 -R-------ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD---GFDQS--------TNVKVIMATNRAD 322 (428)
T ss_dssp -H-------HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHH---HSCSS--------CSEEEEEEESCSS
T ss_pred -H-------HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhh---CCCCC--------CCEEEEEecCChh
Confidence 1 11248999999874333221 1111 334444442 33222 2466888988764
Q ss_pred CCCCCCcchhc--ccc-ceecc-CCCHHHHHHHHHHHHHh
Q psy12680 1479 TGNTVTPRFSR--HFN-QIVIN-KFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1479 gg~~is~Rf~r--~f~-vi~i~-~p~~~sL~~If~~il~~ 1514 (2567)
.++|-++| .|- .|.+| .|+.+.-..||..++..
T Consensus 323 ---~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~ 359 (428)
T 4b4t_K 323 ---TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK 359 (428)
T ss_dssp ---SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS
T ss_pred ---hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 47777776 443 46676 68999988898876643
No 82
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0013 Score=84.32 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=75.8
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc------CHHHHHHHHHhhhh
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT------SANQTQDIIMSKLD 1406 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T------ts~~~q~~ies~le 1406 (2567)
..+++||+||||||||+++++.-. ++. ..++.++.|.-. +...+..+.... .
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~------------------e~~---~~fi~vs~s~L~sk~vGesek~ir~lF~~A-r 299 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVAN------------------RTD---ATFIRVIGSELVQKYVGEGARMVRELFEMA-R 299 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHH------------------HHT---CEEEEEEGGGGCCCSSSHHHHHHHHHHHHH-H
T ss_pred CCCceEeeCCCCCcHHHHHHHHHh------------------ccC---CCeEEEEhHHhhcccCCHHHHHHHHHHHHH-H
Confidence 457899999999999998875321 111 122233333221 122233322211 1
Q ss_pred cccCCccCCCCCcEEEEEEcCCCCcccccc--CCC---C----hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCC
Q psy12680 1407 KRRKGVYGPPLGKRCVVFVDDVNMPLKEEF--GAQ---P----PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPP 1477 (2567)
Q Consensus 1407 kr~~~~~gp~~gK~~vvFiDDiNmP~~d~y--GtQ---~----~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Pp 1477 (2567)
. ...||+|+||+.--..... ++. . ..++|.++ -|+-.. .++-+++|.|.|
T Consensus 300 ~----------~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l---Dg~~~~--------~~ViVIaATNrp 358 (467)
T 4b4t_H 300 T----------KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQL---DGFDPR--------GNIKVMFATNRP 358 (467)
T ss_dssp H----------TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHH---HSSCCT--------TTEEEEEECSCT
T ss_pred h----------cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHh---hccCCC--------CcEEEEeCCCCc
Confidence 1 1248999999986544322 211 1 22333333 122221 246678888876
Q ss_pred CCCCCCCcchhc--cc-cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1478 STGNTVTPRFSR--HF-NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1478 ggg~~is~Rf~r--~f-~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
. .++|-++| .| ..+.++.|+.+.-..||..+++.
T Consensus 359 d---~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 359 N---TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp T---SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred c---cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 4 46676665 33 45778999999999999766543
No 83
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.97 E-value=0.0017 Score=82.32 Aligned_cols=123 Identities=16% Similarity=0.088 Sum_probs=80.5
Q ss_pred CCCCCCCchhHHHHHHHHh---------cCeEEEEeCCCCccHH----------------------H-HHHhhhhhhhcC
Q psy12680 6 EGPAGTGKTETTKDLAKAV---------AKLCIVFNCSDSMDYI----------------------G-LGKFFKGLIATG 53 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---------G~~~~vfNCs~~~d~~----------------------~-m~rif~Gl~q~G 53 (2567)
.||+|||||.+++.+++.+ +.+++.+||.+..+.. . +.+++.-+...|
T Consensus 50 ~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 129 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLR 129 (387)
T ss_dssp CBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 7999999999999999999 8899999999755432 1 334444443343
Q ss_pred --ccccccccccCCch--hHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCC-CCCCCCCchhhHhhcc-
Q psy12680 54 --AWACFDEFNRIDVE--VLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNP-GYAGRSELPDNLKSLF- 127 (2567)
Q Consensus 54 --aW~CFDEfNri~~~--vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNP-gYaGRseLPdnLk~lF- 127 (2567)
...++||++++... ...++.+.+..+. ... .+.++.+.+|.|. .+ ...+.+.++.-|
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~----~~~-----------~~~~~~~I~~t~~~~~--~~~l~~~l~~r~~ 192 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQ----ELG-----------DRVWVSLVGITNSLGF--VENLEPRVKSSLG 192 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGG----CC----------------CEEEEECSCSTT--SSSSCHHHHTTTT
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchh----hcC-----------CCceEEEEEEECCCch--HhhhCHHHHhcCC
Confidence 37889999999765 4444444333221 100 0234445555553 33 235677888878
Q ss_pred -ccccccCCCHHHHHHHHH
Q psy12680 128 -RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 128 -Rpvam~~PD~~lIaEi~L 145 (2567)
+.+.+-.|+..-+.+++-
T Consensus 193 ~~~i~l~~l~~~~~~~il~ 211 (387)
T 2v1u_A 193 EVELVFPPYTAPQLRDILE 211 (387)
T ss_dssp SEECCBCCCCHHHHHHHHH
T ss_pred CeEEeeCCCCHHHHHHHHH
Confidence 678888899888888754
No 84
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.96 E-value=0.00032 Score=86.60 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=79.2
Q ss_pred CCCCCCCCchhHHHHHHHHhcC-------eEEEEeCCCCcc------HHHHHHhhhhhhhcCccccccccccC-------
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAK-------LCIVFNCSDSMD------YIGLGKFFKGLIATGAWACFDEFNRI------- 64 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~-------~~~vfNCs~~~d------~~~m~rif~Gl~q~GaW~CFDEfNri------- 64 (2567)
..||+|||||.+++.+|+.++. +++.++|++-.. ...+..+|.-. .|...++||+++|
T Consensus 72 l~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~ 149 (309)
T 3syl_A 72 FTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNER 149 (309)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcc
Confidence 3699999999999999999966 899999987543 12233333322 4679999999988
Q ss_pred --CchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCC-CCCCCchhhHhhcc-ccccccCCCHHHH
Q psy12680 65 --DVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGY-AGRSELPDNLKSLF-RTVAMMVPDYALI 140 (2567)
Q Consensus 65 --~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgY-aGRseLPdnLk~lF-Rpvam~~PD~~lI 140 (2567)
+.+++..+-+.+.. . ..++-+..|.|+.- .....+.+.|+.-| +.|.+-.||..-+
T Consensus 150 ~~~~~~~~~Ll~~l~~-------~-------------~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 150 DYGQEAIEILLQVMEN-------N-------------RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEEL 209 (309)
T ss_dssp CCTHHHHHHHHHHHHH-------C-------------TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHH
T ss_pred cccHHHHHHHHHHHhc-------C-------------CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHH
Confidence 66666655554432 1 13344556665431 00111335677777 8899999999888
Q ss_pred HHHHH
Q psy12680 141 SEIIV 145 (2567)
Q Consensus 141 aEi~L 145 (2567)
.+++-
T Consensus 210 ~~il~ 214 (309)
T 3syl_A 210 FEIAG 214 (309)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 85
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.95 E-value=0.00023 Score=77.75 Aligned_cols=124 Identities=10% Similarity=0.048 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHH
Q psy12680 1322 RNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDII 1401 (2567)
Q Consensus 1322 R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~i 1401 (2567)
+....+..+...+.|++++||+|||||.+++... .... ..+.+|++..+... .
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~------------------~~~~----~~~~~~~~~~~~~~-----~ 67 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFETVARYFH------------------KNGT----PWVSPARVEYLIDM-----P 67 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGC------------------CTTS----CEECCSSTTHHHHC-----H
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHH------------------HhCC----CeEEechhhCChHh-----h
Confidence 3444556667889999999999999998876421 1111 34556666433211 2
Q ss_pred HhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC-
Q psy12680 1402 MSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG- 1480 (2567)
Q Consensus 1402 es~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg- 1480 (2567)
.+.++... ..++|+||++.-..+ ....|-++++.+. -.++.++++.|.+-..
T Consensus 68 ~~~~~~a~----------~~~l~lDei~~l~~~------~q~~Ll~~l~~~~-----------~~~~~iI~~tn~~~~~~ 120 (143)
T 3co5_A 68 MELLQKAE----------GGVLYVGDIAQYSRN------IQTGITFIIGKAE-----------RCRVRVIASCSYAAGSD 120 (143)
T ss_dssp HHHHHHTT----------TSEEEEEECTTCCHH------HHHHHHHHHHHHT-----------TTTCEEEEEEEECTTTC
T ss_pred hhHHHhCC----------CCeEEEeChHHCCHH------HHHHHHHHHHhCC-----------CCCEEEEEecCCCHHHH
Confidence 22222221 136899999865443 2233445555432 1245678888754221
Q ss_pred --CCCCcchhccccceeccCCC
Q psy12680 1481 --NTVTPRFSRHFNQIVINKFD 1500 (2567)
Q Consensus 1481 --~~is~Rf~r~f~vi~i~~p~ 1500 (2567)
. +.+++...++.+.+.-|+
T Consensus 121 ~~~-~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 121 GIS-CEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp --C-HHHHHHHHSSSEEEEECC
T ss_pred HhC-ccHHHHHHhcCcEEeCCC
Confidence 2 556677777776655443
No 86
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.95 E-value=0.0013 Score=77.24 Aligned_cols=159 Identities=15% Similarity=0.209 Sum_probs=83.6
Q ss_pred HHHHHhcCC---CcccccCCCCcccceeehhhhhhccccccccch--hhhhhhhhccc-cccceeeccccccCHHHHHHH
Q psy12680 1327 MKLLVTHQK---PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGF--QHFLLKELSIE-QWQPLIMNFSAQTSANQTQDI 1400 (2567)
Q Consensus 1327 l~~ll~~~~---pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~--~~~ll~~l~~~-~~~~~~lnfSa~Tts~~~q~~ 1400 (2567)
+..++..+. +++++||+|||||++++................ ...-...+... ......++.+..+....+..+
T Consensus 35 l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (250)
T 1njg_A 35 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDL 114 (250)
T ss_dssp HHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHH
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHH
Confidence 334444444 689999999999998875432221110000000 00000000000 011223333333444444444
Q ss_pred HHhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCC
Q psy12680 1401 IMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG 1480 (2567)
Q Consensus 1401 ies~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg 1480 (2567)
++. + ...+..+++.++++||++.-.. ...+.|..+++... .++.++++.+.+.
T Consensus 115 ~~~-~------~~~~~~~~~~vlviDe~~~l~~------~~~~~l~~~l~~~~------------~~~~~i~~t~~~~-- 167 (250)
T 1njg_A 115 LDN-V------QYAPARGRFKVYLIDEVHMLSR------HSFNALLKTLEEPP------------EHVKFLLATTDPQ-- 167 (250)
T ss_dssp HHS-C------CCSCSSSSSEEEEEETGGGSCH------HHHHHHHHHHHSCC------------TTEEEEEEESCGG--
T ss_pred HHH-h------hhchhcCCceEEEEECcccccH------HHHHHHHHHHhcCC------------CceEEEEEeCChH--
Confidence 432 1 1223456778999999865221 23344555554311 1345666665432
Q ss_pred CCCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1481 NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1481 ~~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+.+.+.+..+.++.++.+.+..++..++.
T Consensus 168 -~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 168 -KLPVTILSRCLQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp -GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred -hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence 35667777788899999999999998887664
No 87
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.95 E-value=0.0018 Score=77.72 Aligned_cols=120 Identities=21% Similarity=0.209 Sum_probs=78.7
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccCCchhH--------
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRIDVEVL-------- 69 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri~~~vL-------- 69 (2567)
..||+|||||.+++.+|+.++.+++.++|++-.+ .+.+..+|.-... ..+-.++||++.+..+.-
T Consensus 50 l~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~ 129 (257)
T 1lv7_A 50 MVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129 (257)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTC
T ss_pred EECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCch
Confidence 4699999999999999999999999999997543 2445666655433 246789999987765321
Q ss_pred ---HHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--cc-ccccccCCCHHHHHHH
Q psy12680 70 ---SVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LF-RTVAMMVPDYALISEI 143 (2567)
Q Consensus 70 ---Svvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lF-Rpvam~~PD~~lIaEi 143 (2567)
..+.+.+..+... .. +..+-++.|.|+- ..|++.+.. .| |++.+-.||..--.+|
T Consensus 130 ~~~~~~~~ll~~l~~~-~~--------------~~~~~vI~~tn~~----~~l~~~l~r~~rf~~~i~i~~P~~~~r~~i 190 (257)
T 1lv7_A 130 EREQTLNQMLVEMDGF-EG--------------NEGIIVIAATNRP----DVLDPALLRPGRFDRQVVVGLPDVRGREQI 190 (257)
T ss_dssp HHHHHHHHHHHHHHTC-CS--------------SSCEEEEEEESCT----TTSCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCc-cc--------------CCCEEEEEeeCCc----hhCCHHHcCCCcCCeEEEeCCCCHHHHHHH
Confidence 2333333332211 00 1234456677753 246666654 33 6788889999877665
No 88
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.94 E-value=0.00087 Score=85.02 Aligned_cols=150 Identities=13% Similarity=0.218 Sum_probs=82.6
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccc---cccceeeccccccCHHHHHHHHHhhhhccc-
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIE---QWQPLIMNFSAQTSANQTQDIIMSKLDKRR- 1409 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~---~~~~~~lnfSa~Tts~~~q~~ies~lekr~- 1409 (2567)
+.+++++||+|||||++++... +.+... .+..+.++++..++...+...+...+....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~ 106 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVL------------------SKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP 106 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHH------------------HHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHH------------------HHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 5679999999999999886432 222111 344556666555444333332222111000
Q ss_pred --CC----------ccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCC
Q psy12680 1410 --KG----------VYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPP 1477 (2567)
Q Consensus 1410 --~~----------~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Pp 1477 (2567)
+. .+-...++.+|+++||+..-. ....+..+.-|..+++.. . -.++.++++.+.+
T Consensus 107 ~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--~~~~~~~l~~l~~~~~~~---~--------~~~~~~I~~~~~~ 173 (386)
T 2qby_A 107 FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFV--KKYNDDILYKLSRINSEV---N--------KSKISFIGITNDV 173 (386)
T ss_dssp SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHH--HSSCSTHHHHHHHHHHSC---C--------C--EEEEEEESCG
T ss_pred CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhh--ccCcCHHHHHHhhchhhc---C--------CCeEEEEEEECCC
Confidence 00 000013457899999975422 111234444343344321 1 1246677777755
Q ss_pred CCCCCCCcchhccc--cceeccCCCHHHHHHHHHHHHHh
Q psy12680 1478 STGNTVTPRFSRHF--NQIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1478 ggg~~is~Rf~r~f--~vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
.--..+.+++.+.| ..+.++.++.+.+..|+...+..
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 212 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM 212 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh
Confidence 43234566777777 57899999999999999887653
No 89
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.93 E-value=0.0016 Score=76.64 Aligned_cols=120 Identities=10% Similarity=0.055 Sum_probs=80.9
Q ss_pred CCCCCCCCchhHHHHHHHHhc---CeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchh--HHHHHHHHHhh
Q psy12680 5 PEGPAGTGKTETTKDLAKAVA---KLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEV--LSVVAQQILTI 79 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG---~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~v--LSvvaqqi~~I 79 (2567)
..||+|||||.+++.+++.++ ..++.++|++-.+. +.+++..+ ..+...++||++.++... ...+...+...
T Consensus 57 l~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~ 133 (242)
T 3bos_A 57 LWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI--STALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRV 133 (242)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS--CGGGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHH
Confidence 369999999999999999887 78999999875542 23344433 345678999999998765 44444443332
Q ss_pred hhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc---ccccccCCCHHHHHHHHH
Q psy12680 80 QRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF---RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 80 q~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF---Rpvam~~PD~~lIaEi~L 145 (2567)
.. .+ ...+.+|.|........+.+.|+.-| +.+.+-.||..-+.+++-
T Consensus 134 ~~---~~---------------~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 134 AE---QK---------------RGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp HH---HC---------------SCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred HH---cC---------------CCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 21 11 11256676644433334546677777 788999999988888753
No 90
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.91 E-value=0.00041 Score=85.80 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=81.6
Q ss_pred CCCCCCCchhHHHHHHHHh-----cCeEEEEeCCCCccHHHHHHhhhhhh-------hcCccccccccccCCchhHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAV-----AKLCIVFNCSDSMDYIGLGKFFKGLI-------ATGAWACFDEFNRIDVEVLSVVA 73 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-----G~~~~vfNCs~~~d~~~m~rif~Gl~-------q~GaW~CFDEfNri~~~vLSvva 73 (2567)
.||+|||||.+++.+++.+ +.+++.+||++......+...+..++ ..+...++||+++++.+....
T Consensus 44 ~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~-- 121 (319)
T 2chq_A 44 SGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAA-- 121 (319)
T ss_dssp ESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHT--
T ss_pred ECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHH--
Confidence 6999999999999999997 56789999998665555555544444 224678999999998754222
Q ss_pred HHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 74 QQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 74 qqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+...+.. ..+++-+.+|.|.. ..+++.|++-|..|.+-.|+..-+.+++.
T Consensus 122 -----L~~~le~-------------~~~~~~~i~~~~~~----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 122 -----LRRTMEM-------------YSKSCRFILSCNYV----SRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171 (319)
T ss_dssp -----TGGGTSS-------------SSSSEEEEEEESCG----GGSCHHHHTTCEEEECCCCCHHHHHHHHH
T ss_pred -----HHHHHHh-------------cCCCCeEEEEeCCh----hhcchHHHhhCeEEEecCCCHHHHHHHHH
Confidence 2222221 12344455566642 36888999989999999999888777653
No 91
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.91 E-value=0.0021 Score=75.34 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=82.1
Q ss_pred CCCCCCCCchhHHHHHHHHhcC------------------------eEEEEeCCCCccHHHHHHhhhhhhh-----cCcc
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAK------------------------LCIVFNCSDSMDYIGLGKFFKGLIA-----TGAW 55 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~------------------------~~~vfNCs~~~d~~~m~rif~Gl~q-----~GaW 55 (2567)
..||+|||||.+++.+++.++. ..+.+++........+..++.-+.. ....
T Consensus 50 l~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 129 (250)
T 1njg_A 50 FSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 129 (250)
T ss_dssp EECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEE
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceE
Confidence 4699999999999999999976 3466777766666666666665432 2478
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCC
Q psy12680 56 ACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVP 135 (2567)
Q Consensus 56 ~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~P 135 (2567)
..+||+++++.+++..+...+.. . .+++-+.+|.|. ...+++.++.-+..+.+-.|
T Consensus 130 lviDe~~~l~~~~~~~l~~~l~~-------~-------------~~~~~~i~~t~~----~~~~~~~l~~r~~~i~l~~l 185 (250)
T 1njg_A 130 YLIDEVHMLSRHSFNALLKTLEE-------P-------------PEHVKFLLATTD----PQKLPVTILSRCLQFHLKAL 185 (250)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHS-------C-------------CTTEEEEEEESC----GGGSCHHHHTTSEEEECCCC
T ss_pred EEEECcccccHHHHHHHHHHHhc-------C-------------CCceEEEEEeCC----hHhCCHHHHHHhhhccCCCC
Confidence 89999999998877766554431 1 233445555553 23577778877888888888
Q ss_pred CHHHHHHHH
Q psy12680 136 DYALISEII 144 (2567)
Q Consensus 136 D~~lIaEi~ 144 (2567)
+..-+.+++
T Consensus 186 ~~~e~~~~l 194 (250)
T 1njg_A 186 DVEQIRHQL 194 (250)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 987777664
No 92
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.88 E-value=0.00032 Score=76.83 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=50.9
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQI 76 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi 76 (2567)
.||+|||||..++.+++.. |.+++ +||+.-.+-......|. .+. |.=.++||+++++.++...+.+.+
T Consensus 30 ~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~-~a~-~g~l~ldei~~l~~~~q~~Ll~~l 100 (145)
T 3n70_A 30 YGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIA-LAQ-GGTLVLSHPEHLTREQQYHLVQLQ 100 (145)
T ss_dssp ESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHH-HHT-TSCEEEECGGGSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHH-HcC-CcEEEEcChHHCCHHHHHHHHHHH
Confidence 6999999999999999987 77888 99998655432222221 123 445799999999998877666655
No 93
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.88 E-value=0.00068 Score=82.27 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=47.2
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc-------HHHHHHhhhhhh-hcCccccccccccC
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD-------YIGLGKFFKGLI-ATGAWACFDEFNRI 64 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d-------~~~m~rif~Gl~-q~GaW~CFDEfNri 64 (2567)
.||+|||||.+++.+|+.+|.+++.+||++.+- ...+.++|.... ..+.-.++||+++|
T Consensus 70 ~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 699999999999999999999999999986432 134555665544 34678899999998
No 94
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.87 E-value=0.00055 Score=82.81 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=32.1
Q ss_pred eeeeeeecCCCCCCCCCCcchhc--cc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1467 EIQLMCAMGPPSTGNTVTPRFSR--HF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1467 diq~v~am~Ppggg~~is~Rf~r--~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
++.++++.|.|. .+.+.+.| .| ..+.++.|+.+....|+...+.
T Consensus 151 ~v~vi~ttn~~~---~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 151 PVIVLAATNRPE---ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CCEEEECBSCCT---TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CEEEEEecCCch---hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 467889998874 35666666 44 4578899999998888876553
No 95
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0012 Score=83.85 Aligned_cols=84 Identities=17% Similarity=0.272 Sum_probs=50.2
Q ss_pred EEEEEEcCCCCcccccc-----CCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCcchhc--cc-
Q psy12680 1420 RCVVFVDDVNMPLKEEF-----GAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSR--HF- 1491 (2567)
Q Consensus 1420 ~~vvFiDDiNmP~~d~y-----GtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~Rf~r--~f- 1491 (2567)
.||+|+||+.--..... |.......+-|+++.-..++. -.++-+++|.|.|. .++|-++| .|
T Consensus 276 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~-------~~~ViVIaATNrpd---~LDpALlRpGRfD 345 (437)
T 4b4t_I 276 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD-------RGDVKVIMATNKIE---TLDPALIRPGRID 345 (437)
T ss_dssp SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC-------SSSEEEEEEESCST---TCCTTSSCTTTEE
T ss_pred CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC-------CCCEEEEEeCCChh---hcCHHHhcCCcee
Confidence 38999999885544322 222222233334332111221 13467889999775 35666665 33
Q ss_pred cceeccCCCHHHHHHHHHHHHH
Q psy12680 1492 NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1492 ~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
..|.++.|+.+.-..||..++.
T Consensus 346 ~~I~v~lPd~~~R~~Il~~~l~ 367 (437)
T 4b4t_I 346 RKILFENPDLSTKKKILGIHTS 367 (437)
T ss_dssp EEECCCCCCHHHHHHHHHHHHT
T ss_pred EEEEcCCcCHHHHHHHHHHHhc
Confidence 3477899999999999986654
No 96
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.0015 Score=80.97 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=80.3
Q ss_pred CCCCCCCchhHHHHHHHHhc-----CeEEEEeCCCCccHHHHHHhhhhhhh-------cCccccccccccCCchhHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVA-----KLCIVFNCSDSMDYIGLGKFFKGLIA-------TGAWACFDEFNRIDVEVLSVVA 73 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG-----~~~~vfNCs~~~d~~~m~rif~Gl~q-------~GaW~CFDEfNri~~~vLSvva 73 (2567)
.||+|||||.+++.+++.++ ..++.+||++......+...+...+. .+.-.++||+++++.+....+.
T Consensus 52 ~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~ 131 (327)
T 1iqp_A 52 AGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALR 131 (327)
T ss_dssp ESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHH
Confidence 69999999999999999974 34888999986555444443333332 2456789999999988766655
Q ss_pred HHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHH
Q psy12680 74 QQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEII 144 (2567)
Q Consensus 74 qqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~ 144 (2567)
..+... .+++-+.+|.|.. ..+++.|++-|..+.+-.|+..-+.+++
T Consensus 132 ~~le~~--------------------~~~~~~i~~~~~~----~~l~~~l~sr~~~~~~~~l~~~~~~~~l 178 (327)
T 1iqp_A 132 RTMEMF--------------------SSNVRFILSCNYS----SKIIEPIQSRCAIFRFRPLRDEDIAKRL 178 (327)
T ss_dssp HHHHHT--------------------TTTEEEEEEESCG----GGSCHHHHHTEEEEECCCCCHHHHHHHH
T ss_pred HHHHhc--------------------CCCCeEEEEeCCc----cccCHHHHhhCcEEEecCCCHHHHHHHH
Confidence 444321 1233344555642 3588889888888888889988777664
No 97
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0011 Score=84.91 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc------CHHHHHHHHHhhhhc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT------SANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T------ts~~~q~~ies~lek 1407 (2567)
.+++||+||||||||+++++.-. ++ ...++.++.|.-. +...+..+... -.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~------------------e~---~~~f~~v~~s~l~~~~vGese~~ir~lF~~-A~~ 272 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA------------------QT---NATFLKLAAPQLVQMYIGEGAKLVRDAFAL-AKE 272 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH------------------HH---TCEEEEEEGGGGCSSCSSHHHHHHHHHHHH-HHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH------------------Hh---CCCEEEEehhhhhhcccchHHHHHHHHHHH-HHh
Confidence 46899999999999999875321 11 1122233333221 12223332211 111
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCccccc-----cCCCChHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPLKEE-----FGAQPPIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~~d~-----yGtQ~~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
...||+|+||+.--.... -|.......+-+++.. .|+-.. .++-++||.|.|..
T Consensus 273 ----------~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--------~~ViVIaaTNrp~~-- 332 (434)
T 4b4t_M 273 ----------KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--------DRVKVLAATNRVDV-- 332 (434)
T ss_dssp ----------HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--------CSSEEEEECSSCCC--
T ss_pred ----------cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--------CCEEEEEeCCCchh--
Confidence 123899999987432221 1222222233333332 222111 24667889997753
Q ss_pred CCCcchhc--cc-cceeccCCCHHHHHHHHHHHHHhh
Q psy12680 1482 TVTPRFSR--HF-NQIVINKFDDDTMVTIFSKILLWH 1515 (2567)
Q Consensus 1482 ~is~Rf~r--~f-~vi~i~~p~~~sL~~If~~il~~~ 1515 (2567)
++|-++| .| ..+.++.|+.+.-..||..++...
T Consensus 333 -LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (434)
T 4b4t_M 333 -LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM 368 (434)
T ss_dssp -CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred -cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 5555554 33 346789999999999998766543
No 98
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.83 E-value=0.001 Score=83.57 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=89.7
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEE-----------------------EEEeccCCCCcCcccc
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVE-----------------------IIVINPKSITMGQLYG 420 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~-----------------------~~~inPKait~~eLyG 420 (2567)
...+|+|.||||+|||++.+.+++.+.... ...+.++. ..+--|...+..+|+|
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 120 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLPEIE---AVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVG 120 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCCEE---EETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCcccc---ccccccccccccccccchhhhhccccccCCCcccccCCCcchhhhee
Confidence 345699999999999999999988763100 00000000 0011244455667777
Q ss_pred cccCC------CCCCCcchHHHHHHHHHhcCCCCceEEEeCC--CCCHHHHHHHHhhhcCCceeEecccceeecCCCCeE
Q psy12680 421 QFDAV------SHEWSDGILAVSYRQFAMSQNENRKWLIFDG--PVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSL 492 (2567)
Q Consensus 421 ~~d~~------T~EW~DGvls~i~R~~~~~~~~~~~WivfDG--pVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~l 492 (2567)
..+.. ...+..|.+... ....+++|- .+++.=.+.|..+|++........|.....+.++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~~~a----------~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~l 190 (350)
T 1g8p_A 121 ALDIERAISKGEKAFEPGLLARA----------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVL 190 (350)
T ss_dssp EECHHHHHHHCGGGEECCHHHHH----------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEE
T ss_pred echhhhhhcCCceeecCceeeec----------CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEE
Confidence 64321 133455655321 246899984 355666677888888876666677888888888888
Q ss_pred EEecCCcC-cCCcceeeecee-EEecC
Q psy12680 493 IFEPQDLE-VASPATVSRCGM-IYMEP 517 (2567)
Q Consensus 493 lFEv~dL~-~ASPATVSRcGm-Vy~~~ 517 (2567)
+.=+.... ...||..|||++ +.+.+
T Consensus 191 i~~~n~~~~~l~~~L~~R~~~~~~l~~ 217 (350)
T 1g8p_A 191 VGSGNPEEGDLRPQLLDRFGLSVEVLS 217 (350)
T ss_dssp EEEECSCSCCCCHHHHTTCSEEEECCC
T ss_pred EEEeCCCCCCCCHHHHhhcceEEEcCC
Confidence 88554323 578999999998 67764
No 99
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.82 E-value=0.00064 Score=86.02 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=78.1
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCH--HHHHHHHHhhhhcccC
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSA--NQTQDIIMSKLDKRRK 1410 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts--~~~q~~ies~lekr~~ 1410 (2567)
..++++|+||+|||||+++++... .+ ...++.++++..... ......+...++.-+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~------------------~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~- 173 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS------------------QS---GATFFSISASSLTSKWVGEGEKMVRALFAVAR- 173 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH------------------HT---TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHH-
T ss_pred CCceEEEECCCCCCHHHHHHHHHH------------------Hc---CCeEEEEehHHhhccccchHHHHHHHHHHHHH-
Confidence 357899999999999998865321 11 123344555543221 111111111111110
Q ss_pred CccCCCCCcEEEEEEcCCCCccccc-cCCCC-h----HHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCC
Q psy12680 1411 GVYGPPLGKRCVVFVDDVNMPLKEE-FGAQP-P----IEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVT 1484 (2567)
Q Consensus 1411 ~~~gp~~gK~~vvFiDDiNmP~~d~-yGtQ~-~----ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is 1484 (2567)
.++.+|+|+||++.-.... -|.+. . .++|.++-. ... ..-.++.+++|+|+|. .+.
T Consensus 174 ------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~---~~~------~~~~~v~vI~atn~~~---~l~ 235 (357)
T 3d8b_A 174 ------CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG---ATT------SSEDRILVVGATNRPQ---EID 235 (357)
T ss_dssp ------HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEESCGG---GBC
T ss_pred ------hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc---ccc------cCCCCEEEEEecCChh---hCC
Confidence 1235799999986432211 11111 2 234444321 111 0113577899998864 467
Q ss_pred cchhcccc-ceeccCCCHHHHHHHHHHHHHh
Q psy12680 1485 PRFSRHFN-QIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1485 ~Rf~r~f~-vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
+.+.|.|. ++.++.|+.+....|+..++..
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 266 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSK 266 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhh
Confidence 78888886 6789999999999998876643
No 100
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.81 E-value=0.001 Score=85.08 Aligned_cols=140 Identities=17% Similarity=0.261 Sum_probs=76.7
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHH--HHHHHHHhhhhcccCC
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSAN--QTQDIIMSKLDKRRKG 1411 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~--~~q~~ies~lekr~~~ 1411 (2567)
..++||+||+|||||++++... +.+ ...++.++++.-.... .....+...++.-+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia------------------~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~-- 204 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVA------------------AES---NATFFNISAASLTSKYVGEGEKLVRALFAVAR-- 204 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHH------------------HHT---TCEEEEECSCCC-------CHHHHHHHHHHHH--
T ss_pred CceEEEECCCCCCHHHHHHHHH------------------Hhh---cCcEEEeeHHHhhccccchHHHHHHHHHHHHH--
Confidence 5789999999999999886421 111 1234556665433210 11111111111111
Q ss_pred ccCCCCCcEEEEEEcCCCCccccc-cCCCC-hH----HHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCCCc
Q psy12680 1412 VYGPPLGKRCVVFVDDVNMPLKEE-FGAQP-PI----EILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTP 1485 (2567)
Q Consensus 1412 ~~gp~~gK~~vvFiDDiNmP~~d~-yGtQ~-~i----elLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~is~ 1485 (2567)
....+|+|+||++.-.... -+.+. .. +||+.+-. .... .-.++.+++++|++. .+.+
T Consensus 205 -----~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~------~~~~v~vI~atn~~~---~l~~ 267 (389)
T 3vfd_A 205 -----ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG---VQSA------GDDRVLVMGATNRPQ---ELDE 267 (389)
T ss_dssp -----HSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH---HC-----------CEEEEEEESCGG---GCCH
T ss_pred -----hcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc---cccc------CCCCEEEEEecCCch---hcCH
Confidence 0123699999997532221 11111 22 34444321 1110 113578899999864 5678
Q ss_pred chhcccc-ceeccCCCHHHHHHHHHHHHH
Q psy12680 1486 RFSRHFN-QIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1486 Rf~r~f~-vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.|.|. ++.++.|+.+....|+..++.
T Consensus 268 ~l~~R~~~~i~i~~p~~~~r~~il~~~~~ 296 (389)
T 3vfd_A 268 AVLRRFIKRVYVSLPNEETRLLLLKNLLC 296 (389)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred HHHcCcceEEEcCCcCHHHHHHHHHHHHH
Confidence 8888885 788999999999999887663
No 101
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.77 E-value=0.0034 Score=76.97 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=74.7
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccH------HHHHHhhhhhh-hcCccccccccccCCchhH--------H
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY------IGLGKFFKGLI-ATGAWACFDEFNRIDVEVL--------S 70 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~------~~m~rif~Gl~-q~GaW~CFDEfNri~~~vL--------S 70 (2567)
.||+|||||.+++.+|+.+|.+++.+||++-.+. +.+..+|.-.. ..++-.++||++.+....- .
T Consensus 60 ~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 139 (297)
T 3b9p_A 60 FGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRR 139 (297)
T ss_dssp ESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHH
T ss_pred ECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHH
Confidence 6999999999999999999999999999986532 22233332222 2357889999999854321 1
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc-ccccccCCCHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF-Rpvam~~PD~~lIaEi~ 144 (2567)
+..+.+..+.. .... .....+-++.|-|.- ..|++.+..-| +-+.+-.||.....+++
T Consensus 140 ~~~~ll~~l~~-~~~~-----------~~~~~v~vi~~tn~~----~~l~~~l~~R~~~~i~~~~p~~~~r~~il 198 (297)
T 3b9p_A 140 LKTEFLVEFDG-LPGN-----------PDGDRIVVLAATNRP----QELDEAALRRFTKRVYVSLPDEQTRELLL 198 (297)
T ss_dssp HHHHHHHHHHH-CC-----------------CEEEEEEESCG----GGBCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHhc-cccc-----------CCCCcEEEEeecCCh----hhCCHHHHhhCCeEEEeCCcCHHHHHHHH
Confidence 22222222221 1100 001223455565632 25777777666 56777789988776664
No 102
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.75 E-value=0.00056 Score=84.58 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=85.5
Q ss_pred HHHHhcCC--CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhcc--ccccceeeccccccCHHHHHHHHHh
Q psy12680 1328 KLLVTHQK--PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSI--EQWQPLIMNFSAQTSANQTQDIIMS 1403 (2567)
Q Consensus 1328 ~~ll~~~~--pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~--~~~~~~~lnfSa~Tts~~~q~~ies 1403 (2567)
..++..+. +++|+||+|||||++++.... .+.. .....+.+|++.......+.+.+..
T Consensus 30 ~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (319)
T 2chq_A 30 KGYVERKNIPHLLFSGPPGTGKTATAIALAR------------------DLFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (319)
T ss_dssp HTTTTTTCCCCEEEESSSSSSHHHHHHHHHH------------------HHHTTCHHHHCEEEETTSTTCTTTSSHHHHH
T ss_pred HHHHhCCCCCeEEEECcCCcCHHHHHHHHHH------------------HhcCCcccCCeEEEeCccccChHHHHHHHHH
Confidence 33444443 699999999999988864221 1110 1223556777765554444444433
Q ss_pred hhhcccCCccCCC-CCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCC
Q psy12680 1404 KLDKRRKGVYGPP-LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNT 1482 (2567)
Q Consensus 1404 ~lekr~~~~~gp~-~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~ 1482 (2567)
-... .|. .+++.|+++||++.-..+ ..+.|+.+++.. -.++.++++++.+. .
T Consensus 92 ~~~~------~~~~~~~~~vliiDe~~~l~~~------~~~~L~~~le~~------------~~~~~~i~~~~~~~---~ 144 (319)
T 2chq_A 92 FART------APIGGAPFKIIFLDEADALTAD------AQAALRRTMEMY------------SKSCRFILSCNYVS---R 144 (319)
T ss_dssp HHHS------CCSSSCCCEEEEEETGGGSCHH------HHHTTGGGTSSS------------SSSEEEEEEESCGG---G
T ss_pred HHhc------CCCCCCCceEEEEeCCCcCCHH------HHHHHHHHHHhc------------CCCCeEEEEeCChh---h
Confidence 2211 122 366789999997653322 223344444421 12456777777643 5
Q ss_pred CCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1483 VTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1483 is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
+.+.+.+.+.++.++.|+.+.+..+...++.
T Consensus 145 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 145 IIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp SCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 6788888889999999999999888876653
No 103
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.73 E-value=0.00092 Score=89.17 Aligned_cols=133 Identities=15% Similarity=0.107 Sum_probs=80.0
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHH---------------HHHhhhhhhhcCccccccccccCCchhH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIG---------------LGKFFKGLIATGAWACFDEFNRIDVEVL 69 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~---------------m~rif~Gl~q~GaW~CFDEfNri~~~vL 69 (2567)
..||+|||||+++|.+|+.++.+.+.++|+.-.+... +.+.|.-....+.-..+||++++..+.-
T Consensus 113 l~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~ 192 (543)
T 3m6a_A 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFR 192 (543)
T ss_dssp EESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSSCC----
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhc
Confidence 4699999999999999999999999999987544221 1122222222333668999999987531
Q ss_pred HHHHHHHHhhhhhhhcCC-ceEEEcCeEEEee-CceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHH
Q psy12680 70 SVVAQQILTIQRGVTLGE-EEILFEGTILKLD-RTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEII 144 (2567)
Q Consensus 70 Svvaqqi~~Iq~a~~~~~-~~~~f~g~~i~l~-~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~ 144 (2567)
.-. ...+...+...+ ..|.=.+....++ .++-++.|.|+.+ .||+-|..=|..|.+-.|+..-..+|+
T Consensus 193 ~~~---~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~----~l~~aL~~R~~vi~~~~~~~~e~~~Il 262 (543)
T 3m6a_A 193 GDP---SSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA----TIPGPLRDRMEIINIAGYTEIEKLEIV 262 (543)
T ss_dssp --------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT----TSCHHHHHHEEEEECCCCCHHHHHHHH
T ss_pred cCH---HHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc----cCCHHHHhhcceeeeCCCCHHHHHHHH
Confidence 111 111122221111 1222122233333 4566778899865 799999998888888889887776664
No 104
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.73 E-value=0.0026 Score=80.89 Aligned_cols=153 Identities=17% Similarity=0.272 Sum_probs=76.2
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHH----HHHHHHHhhhhcc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSAN----QTQDIIMSKLDKR 1408 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~----~~q~~ies~lekr 1408 (2567)
...+++|+||+|||||++++... +.+ ...++.++++..+.+. .....+...+...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la------------------~~l---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 129 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLA------------------KHL---DIPIAISDATSLTEAGYVGEDVENILTRLLQAS 129 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH------------------HHT---TCCEEEEEGGGCC--------CTHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHH------------------HHh---CCCEEEecchhhhhcCcCCccHHHHHHHHHhhc
Confidence 45789999999999998886421 111 1223445555544322 1112222222211
Q ss_pred cCCccCCCCCcEEEEEEcCCCCccccccC-----C---CChHHHHHHHhhcccc--cc-------cCcceeeeeeeeeee
Q psy12680 1409 RKGVYGPPLGKRCVVFVDDVNMPLKEEFG-----A---QPPIEILRQWLDHWMW--YD-------RKDVVAVKLIEIQLM 1471 (2567)
Q Consensus 1409 ~~~~~gp~~gK~~vvFiDDiNmP~~d~yG-----t---Q~~ielLRQlid~~g~--yd-------r~~~~~~~i~diq~v 1471 (2567)
.+..- .+...|+|+||++.-..+..+ . ......|.++++.+-. .+ ..+...+.-.++.++
T Consensus 130 ~~~~~---~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I 206 (376)
T 1um8_A 130 DWNVQ---KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFI 206 (376)
T ss_dssp TTCHH---HHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEE
T ss_pred cchhh---hcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEE
Confidence 11100 123369999999854433111 1 1166778888883311 11 011111222456677
Q ss_pred eecCCC---------------C---C--------------------CCCCCcchhccc-cceeccCCCHHHHHHHHH
Q psy12680 1472 CAMGPP---------------S---T--------------------GNTVTPRFSRHF-NQIVINKFDDDTMVTIFS 1509 (2567)
Q Consensus 1472 ~am~Pp---------------g---g--------------------g~~is~Rf~r~f-~vi~i~~p~~~sL~~If~ 1509 (2567)
++.++. | . ...+.|.|...+ .++.++.++.+.+..|..
T Consensus 207 ~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 207 CAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp EEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHh
Confidence 765521 0 0 012456666666 667788999999999886
No 105
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.72 E-value=0.00069 Score=88.07 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=32.6
Q ss_pred eeeecCCCCCCCCCCcchhccc---cceeccCCCHHHHHHHHHHHHH
Q psy12680 1470 LMCAMGPPSTGNTVTPRFSRHF---NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1470 ~v~am~Ppggg~~is~Rf~r~f---~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
++++-+||..-..+.+|+.+.| .++.++.|+.+....|+...+.
T Consensus 231 Iitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 231 VICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp EEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 3445555544345788999888 5888999999999998887664
No 106
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.72 E-value=0.00042 Score=83.80 Aligned_cols=132 Identities=20% Similarity=0.161 Sum_probs=77.4
Q ss_pred CCCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccH------HHHHHhhhhhhh-cCccccccccccCCchhHHHHH--
Q psy12680 3 GAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY------IGLGKFFKGLIA-TGAWACFDEFNRIDVEVLSVVA-- 73 (2567)
Q Consensus 3 Gap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~------~~m~rif~Gl~q-~GaW~CFDEfNri~~~vLSvva-- 73 (2567)
--..||+|||||.+++.+|+.++.+++.++|++-.+. ..+..+|.-+.. ..+-.++||++.+...--+.-.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~ 126 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC---------
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCC
Confidence 4568999999999999999999999999999875431 223344443332 3367899999998764211000
Q ss_pred --HHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--cc-ccccccCCCHHHHHHHH
Q psy12680 74 --QQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LF-RTVAMMVPDYALISEII 144 (2567)
Q Consensus 74 --qqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lF-Rpvam~~PD~~lIaEi~ 144 (2567)
.....++..+-.... +. -.-...+-++.|-|+. ..|++.+.. -| +.+.+-.||..-..+++
T Consensus 127 ~~~~~~~~~~~ll~~l~-----~~-~~~~~~v~vi~ttn~~----~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il 192 (268)
T 2r62_A 127 GNDEREQTLNQLLAEMD-----GF-GSENAPVIVLAATNRP----EILDPALMRPGRFDRQVLVDKPDFNGRVEIL 192 (268)
T ss_dssp -CCCSCSSTTTTTTTTT-----CS-SCSCSCCEEEECBSCC----TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHH
T ss_pred CchhHHHHHHHHHHHhh-----Cc-ccCCCCEEEEEecCCc----hhcCHhHcCCCCCCeEEEecCcCHHHHHHHH
Confidence 000001111111100 00 0011234567777754 236666665 44 56888899998887775
No 107
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.68 E-value=0.0022 Score=77.09 Aligned_cols=136 Identities=21% Similarity=0.294 Sum_probs=73.2
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccc------cCHHHHHHHHHhhhhc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQ------TSANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~------Tts~~~q~~ies~lek 1407 (2567)
..+++|+||+|||||++++..... +. ...+.++++.- .+...+..+++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~------------------~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a--- 100 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE------------------AK---VPFFTISGSDFVEMFVGVGASRVRDMFEQA--- 100 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH------------------HT---CCEEEECSCSSTTSCCCCCHHHHHHHHHHH---
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH------------------cC---CCEEEEeHHHHHHHhhhhhHHHHHHHHHHH---
Confidence 467999999999999988753211 11 11233333321 1122333332221
Q ss_pred ccCCccCCCCCcEEEEEEcCCC-Ccccccc---CC-CChHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVN-MPLKEEF---GA-QPPIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiN-mP~~d~y---Gt-Q~~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
+ .+..+++|+||++ ++..... |. ....+.+.+++.. +|+.. -.++.++++.|.|.
T Consensus 101 -~-------~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~~vI~~tn~~~--- 161 (257)
T 1lv7_A 101 -K-------KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--------NEGIIVIAATNRPD--- 161 (257)
T ss_dssp -H-------TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--------SSCEEEEEEESCTT---
T ss_pred -H-------HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--------CCCEEEEEeeCCch---
Confidence 0 1234899999984 3322211 11 1222444554432 22211 13467889999874
Q ss_pred CCCcchhc--cc-cceeccCCCHHHHHHHHHHHH
Q psy12680 1482 TVTPRFSR--HF-NQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1482 ~is~Rf~r--~f-~vi~i~~p~~~sL~~If~~il 1512 (2567)
.+.+++.| .| ..+.++.|+.+....|+..++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 45666655 34 356788999988887776554
No 108
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0028 Score=81.39 Aligned_cols=117 Identities=25% Similarity=0.300 Sum_probs=77.3
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhh-hcCccccccccccCC-----------c
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLI-ATGAWACFDEFNRID-----------V 66 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~-q~GaW~CFDEfNri~-----------~ 66 (2567)
.+||+|||||-++|++|..+|.+++..+|++-++ .+.+..+|.-.. ...|=..|||+.-|- .
T Consensus 220 L~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~ 299 (437)
T 4b4t_L 220 LYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADR 299 (437)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTT
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcch
Confidence 4799999999999999999999999999998664 345556665443 356777889998662 2
Q ss_pred hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhH-hhcccc------ccccCCCHHH
Q psy12680 67 EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNL-KSLFRT------VAMMVPDYAL 139 (2567)
Q Consensus 67 ~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnL-k~lFRp------vam~~PD~~l 139 (2567)
++-.++++.+..+. ..... .++-|+.|-| -|+.| .+|.|| |.+-.||..-
T Consensus 300 ~~~~~l~~lL~~lD-g~~~~--------------~~vivI~ATN--------rp~~LDpAllRpGRfD~~I~i~lPd~~~ 356 (437)
T 4b4t_L 300 EIQRTLMELLTQMD-GFDNL--------------GQTKIIMATN--------RPDTLDPALLRPGRLDRKVEIPLPNEAG 356 (437)
T ss_dssp HHHHHHHHHHHHHH-SSSCT--------------TSSEEEEEES--------STTSSCTTTTSTTSEEEEECCCCCCHHH
T ss_pred HHHHHHHHHHHHhh-cccCC--------------CCeEEEEecC--------CchhhCHHHhCCCccceeeecCCcCHHH
Confidence 34444554444332 11111 1222445555 23333 356676 7888899987
Q ss_pred HHHHH
Q psy12680 140 ISEII 144 (2567)
Q Consensus 140 IaEi~ 144 (2567)
-.+|+
T Consensus 357 R~~Il 361 (437)
T 4b4t_L 357 RLEIF 361 (437)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77663
No 109
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.67 E-value=0.0018 Score=82.01 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCCCCCCchhHHHHHHHHhcC--eEEEEeCCCCcc---------------------------------------------
Q psy12680 6 EGPAGTGKTETTKDLAKAVAK--LCIVFNCSDSMD--------------------------------------------- 38 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~--~~~vfNCs~~~d--------------------------------------------- 38 (2567)
.||+|||||.+++.+|+.++. +.+..+|.+-..
T Consensus 76 ~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~ 155 (368)
T 3uk6_A 76 AGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFL 155 (368)
T ss_dssp EESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CC
T ss_pred ECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccch
Confidence 799999999999999999996 778888866111
Q ss_pred ----------HHHHHHhhhh----hhhcC------ccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEE
Q psy12680 39 ----------YIGLGKFFKG----LIATG------AWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILK 98 (2567)
Q Consensus 39 ----------~~~m~rif~G----l~q~G------aW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~ 98 (2567)
...+-+.+.. ....| .-..+||+++++.+++..+-..+ ......+.
T Consensus 156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~l-------e~~~~~~~------- 221 (368)
T 3uk6_A 156 ALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRAL-------ESDMAPVL------- 221 (368)
T ss_dssp SCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHT-------TCTTCCEE-------
T ss_pred hhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHh-------hCcCCCee-------
Confidence 0111111111 23334 37789999999987766554333 11111121
Q ss_pred eeCceeEEEEeCCCC--------CCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 99 LDRTCSVFITMNPGY--------AGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 99 l~~~~~iFiTmNPgY--------aGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+++-|++. .....||+.|..=|+.+.+-.|+..-+.+++-
T Consensus 222 -------ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 269 (368)
T 3uk6_A 222 -------IMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILR 269 (368)
T ss_dssp -------EEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHH
T ss_pred -------eeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHH
Confidence 22222211 11346889999999999999999998888864
No 110
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.66 E-value=0.002 Score=84.47 Aligned_cols=136 Identities=16% Similarity=0.261 Sum_probs=76.3
Q ss_pred hcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccC------HHHHHHHHHhhh
Q psy12680 1332 THQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTS------ANQTQDIIMSKL 1405 (2567)
Q Consensus 1332 ~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tt------s~~~q~~ies~l 1405 (2567)
....++||+||+|||||+++++... .+ ...++.+|++.-.+ ...+...++..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~------------------~~---~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A- 293 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVAN------------------ET---GAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHH------------------HC---SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHH-
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHH------------------Hh---CCCEEEEEchHhhhhhcchhHHHHHHHHHHH-
Confidence 4457899999999999998864211 11 12344555543221 11222222211
Q ss_pred hcccCCccCCCCCcEEEEEEcCCCCccccccCCC-----ChH-HHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC
Q psy12680 1406 DKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQ-----PPI-EILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST 1479 (2567)
Q Consensus 1406 ekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ-----~~i-elLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg 1479 (2567)
..++.+++|+||++.-....-+.+ ..+ .||+ +++. ... -.++.+++|.|.|.
T Consensus 294 ----------~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~-~ld~--~~~--------~~~v~vIaaTn~~~- 351 (489)
T 3hu3_A 294 ----------EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLT-LMDG--LKQ--------RAHVIVMAATNRPN- 351 (489)
T ss_dssp ----------HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHH-HHHH--SCT--------TSCEEEEEEESCGG-
T ss_pred ----------HhcCCcEEEecchhhhccccccccchHHHHHHHHHHH-Hhhc--ccc--------CCceEEEEecCCcc-
Confidence 112348999999854333221111 122 2333 3331 111 13578899999873
Q ss_pred CCCCCcchhc--ccc-ceeccCCCHHHHHHHHHHHHH
Q psy12680 1480 GNTVTPRFSR--HFN-QIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1480 g~~is~Rf~r--~f~-vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+.+.| .|. .+.++.|+.+....|+...+.
T Consensus 352 --~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 352 --SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp --GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred --ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 35666666 343 488999999999988876543
No 111
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.63 E-value=0.0021 Score=78.95 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=75.6
Q ss_pred cCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccC-----HHHHHHHHHhhhhc
Q psy12680 1333 HQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTS-----ANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1333 ~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tt-----s~~~q~~ies~lek 1407 (2567)
...+++|+||+|||||++++.... .+. ...+.++++.-.. +......+.....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~------------------~~~---~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~- 110 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT------------------ECS---ATFLNISAASLTSKYVGDGEKLVRALFAVAR- 110 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH------------------HTT---CEEEEEESTTTSSSSCSCHHHHHHHHHHHHH-
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH------------------HhC---CCeEEeeHHHHhhcccchHHHHHHHHHHHHH-
Confidence 357899999999999998864321 111 1223344443211 2222222222111
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCccccccC--CCC----hHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPLKEEFG--AQP----PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~~d~yG--tQ~----~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
..+.+|+|+||++.-....-. ... ..++|+.+-....-. .-..+.++++.|.|.
T Consensus 111 ---------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--------~~~~v~vi~~tn~~~--- 170 (297)
T 3b9p_A 111 ---------HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP--------DGDRIVVLAATNRPQ--- 170 (297)
T ss_dssp ---------HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGG---
T ss_pred ---------HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC--------CCCcEEEEeecCChh---
Confidence 123479999998654322111 111 123444443221100 012367888888774
Q ss_pred CCCcchhccc-cceeccCCCHHHHHHHHHHHHH
Q psy12680 1482 TVTPRFSRHF-NQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1482 ~is~Rf~r~f-~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+.+.|.| ..+.++.|+.+....|+..++.
T Consensus 171 ~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~ 203 (297)
T 3b9p_A 171 ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ 203 (297)
T ss_dssp GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG
T ss_pred hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH
Confidence 4677777777 5678899999998888877654
No 112
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.61 E-value=0.0028 Score=82.36 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhh-----cCccccccccccCCchhHHHHHHHHHhhh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIA-----TGAWACFDEFNRIDVEVLSVVAQQILTIQ 80 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q-----~GaW~CFDEfNri~~~vLSvvaqqi~~Iq 80 (2567)
.||+|||||.+++.+++.+++..+.+||+. ...+.+..++.+... .+.-.++||+++++.+....+-
T Consensus 56 ~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL------- 127 (447)
T 3pvs_A 56 WGPPGTGKTTLAEVIARYANADVERISAVT-SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFL------- 127 (447)
T ss_dssp ECSTTSSHHHHHHHHHHHTTCEEEEEETTT-CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCH-------
T ss_pred ECCCCCcHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHH-------
Confidence 699999999999999999999999999976 456667777766543 3678899999999876443322
Q ss_pred hhhhcCCceEEEcCeEEEeeCceeEEEE-eCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 81 RGVTLGEEEILFEGTILKLDRTCSVFIT-MNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 81 ~a~~~~~~~~~f~g~~i~l~~~~~iFiT-mNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
..+..+. +.| |+.| .||. .++++.|.+-|+.+.+-.|+..-|.+++-
T Consensus 128 ~~le~~~--v~l------------I~att~n~~----~~l~~aL~sR~~v~~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 128 PHIEDGT--ITF------------IGATTENPS----FELNSALLSRARVYLLKSLSTEDIEQVLT 175 (447)
T ss_dssp HHHHTTS--CEE------------EEEESSCGG----GSSCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred HHHhcCc--eEE------------EecCCCCcc----cccCHHHhCceeEEeeCCcCHHHHHHHHH
Confidence 2222221 111 2233 3553 47889999989989999999988877754
No 113
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.47 E-value=0.0015 Score=80.58 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=77.7
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhh--------------hh--hhcCccccccccccCCc
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFK--------------GL--IATGAWACFDEFNRIDV 66 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~--------------Gl--~q~GaW~CFDEfNri~~ 66 (2567)
.||+|||||..++.+++.. +.+++.+||+.-.+--.-+.+|. |+ ...|...++||++.++.
T Consensus 31 ~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~ 110 (304)
T 1ojl_A 31 HGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 110 (304)
T ss_dssp ESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH
T ss_pred ECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH
Confidence 6999999999999999976 67899999997654332333321 11 11245689999999998
Q ss_pred hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCC---CCCchhhHhhccccccccCCCHH
Q psy12680 67 EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAG---RSELPDNLKSLFRTVAMMVPDYA 138 (2567)
Q Consensus 67 ~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaG---RseLPdnLk~lFRpvam~~PD~~ 138 (2567)
++...+-+.+.. . .|.-.|..-....++.+..|.|+.... .-.+.+.|..-|..+.+-.|++.
T Consensus 111 ~~q~~Ll~~l~~---~------~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~ 176 (304)
T 1ojl_A 111 LMQVRLLRAIQE---R------EVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLR 176 (304)
T ss_dssp HHHHHHHHHHHS---S------BCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSG
T ss_pred HHHHHHHHHHhc---C------EeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHH
Confidence 766554444332 1 122234444455677889999975210 01133344444446777788865
No 114
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=96.46 E-value=0.0023 Score=81.72 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=74.5
Q ss_pred CCCCCCCCchhHHHHH-HHHhcCeEEEEeCCCCccHHHH-HH--------hhhh---hhhcCccccccccccCCchhHHH
Q psy12680 5 PEGPAGTGKTETTKDL-AKAVAKLCIVFNCSDSMDYIGL-GK--------FFKG---LIATGAWACFDEFNRIDVEVLSV 71 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~L-ak~lG~~~~vfNCs~~~d~~~m-~r--------if~G---l~q~GaW~CFDEfNri~~~vLSv 71 (2567)
..|++|| ||-.+|.+ ++.+.|-+++ +..+-....+ +. +=.| +|. |-=+|.||||+++.+++++
T Consensus 244 L~G~PGt-KS~Lar~i~~~i~pR~~ft--~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAd-gGvl~lDEIn~~~~~~qsa 319 (506)
T 3f8t_A 244 LAGYPVV-CSEILHHVLDHLAPRGVYV--DLRRTELTDLTAVLKEDRGWALRAGAAVLAD-GGILAVDHLEGAPEPHRWA 319 (506)
T ss_dssp EESCHHH-HHHHHHHHHHHTCSSEEEE--EGGGCCHHHHSEEEEESSSEEEEECHHHHTT-TSEEEEECCTTCCHHHHHH
T ss_pred EECCCCh-HHHHHHHHHHHhCCCeEEe--cCCCCCccCceEEEEcCCCcccCCCeeEEcC-CCeeehHhhhhCCHHHHHH
Confidence 5799999 99999999 9998886654 2211111111 11 0122 222 3448999999999999988
Q ss_pred HHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCC-------CCCchhhHhhcccc
Q psy12680 72 VAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAG-------RSELPDNLKSLFRT 129 (2567)
Q Consensus 72 vaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaG-------RseLPdnLk~lFRp 129 (2567)
+-+-+ .++ ++...|. +++..|.+..|+||-+.. -..||+.|-.=|--
T Consensus 320 LlEaM-------Ee~--~VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDL 373 (506)
T 3f8t_A 320 LMEAM-------DKG--TVTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDL 373 (506)
T ss_dssp HHHHH-------HHS--EEEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSE
T ss_pred HHHHH-------hCC--cEEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheee
Confidence 76544 333 4555676 999999999999997511 13899999887743
No 115
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.44 E-value=0.0019 Score=84.68 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=80.3
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhhc-CccccccccccCCch--------hHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIAT-GAWACFDEFNRIDVE--------VLS 70 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q~-GaW~CFDEfNri~~~--------vLS 70 (2567)
.||+|||||.+++.+|+.+|.+++.+||++-.+ ...+..+|.+.... .+=.++||++.|... -..
T Consensus 244 ~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~ 323 (489)
T 3hu3_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (489)
T ss_dssp ECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHH
Confidence 699999999999999999999999999976432 23344555554332 246789999877542 123
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--ccc-cccccCCCHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LFR-TVAMMVPDYALISEII 144 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lFR-pvam~~PD~~lIaEi~ 144 (2567)
++++.+..++.. .. ..++-|+.|.|+- ..|++.|+. .|+ .+.+-.||...-.+|+
T Consensus 324 ~~~~LL~~ld~~-~~--------------~~~v~vIaaTn~~----~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL 381 (489)
T 3hu3_A 324 IVSQLLTLMDGL-KQ--------------RAHVIVMAATNRP----NSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (489)
T ss_dssp HHHHHHHHHHHS-CT--------------TSCEEEEEEESCG----GGBCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHhhcc-cc--------------CCceEEEEecCCc----cccCHHHhCCCcCceEEEeCCCCHHHHHHHH
Confidence 444444444422 11 1234556678853 357777777 454 4888899998888775
No 116
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.44 E-value=0.005 Score=77.18 Aligned_cols=144 Identities=15% Similarity=0.226 Sum_probs=85.6
Q ss_pred HHHHHHhcCCC--cccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccc--cccceeeccccccCHHHHHHHH
Q psy12680 1326 LMKLLVTHQKP--VMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIE--QWQPLIMNFSAQTSANQTQDII 1401 (2567)
Q Consensus 1326 ll~~ll~~~~p--vll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~--~~~~~~lnfSa~Tts~~~q~~i 1401 (2567)
.+..++..|.. ++|+||+|||||++++.... .+... ......+|.+.......+.+.+
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~------------------~l~~~~~~~~~~~~~~~~~~~~~~ir~~i 97 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR------------------EIYGKNYSNMVLELNASDDRGIDVVRNQI 97 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH------------------HHHTTSHHHHEEEECTTSCCSHHHHHTHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH------------------HHcCCCccceEEEEcCcccccHHHHHHHH
Confidence 35556677765 89999999999998865321 11111 1234456665544445555544
Q ss_pred HhhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1402 MSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1402 es~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
..-.+.. .|..+.+-|+++||+.+-..+ ...-|+.+++... ..+.|+.++|++ .
T Consensus 98 ~~~~~~~-----~~~~~~~~viiiDe~~~l~~~------~~~~L~~~le~~~------------~~~~~il~~n~~---~ 151 (340)
T 1sxj_C 98 KDFASTR-----QIFSKGFKLIILDEADAMTNA------AQNALRRVIERYT------------KNTRFCVLANYA---H 151 (340)
T ss_dssp HHHHHBC-----CSSSCSCEEEEETTGGGSCHH------HHHHHHHHHHHTT------------TTEEEEEEESCG---G
T ss_pred HHHHhhc-----ccCCCCceEEEEeCCCCCCHH------HHHHHHHHHhcCC------------CCeEEEEEecCc---c
Confidence 3322111 122233667889997653322 2344566666421 124456666654 2
Q ss_pred CCCcchhccccceeccCCCHHHHHHHHHHHHH
Q psy12680 1482 TVTPRFSRHFNQIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1482 ~is~Rf~r~f~vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+.+.+.+.++.+..++.+.+..+...++.
T Consensus 152 ~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 152 KLTPALLSQCTRFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchhHHhhceeEeccCCCHHHHHHHHHHHHH
Confidence 46777888888888999999998888877663
No 117
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.41 E-value=0.0027 Score=78.29 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=76.1
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccCCchh---------
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRIDVEV--------- 68 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri~~~v--------- 68 (2567)
..||+|||||.+++.+|+.+|.+++.+||++-++ -+.+..+|.-... ..+-.++||++.|....
T Consensus 54 L~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 133 (301)
T 3cf0_A 54 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 133 (301)
T ss_dssp EECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSC
T ss_pred EECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcch
Confidence 4699999999999999999999999999986432 2234445544332 34778999999875431
Q ss_pred --HHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--cc-ccccccCCCHHHHHHH
Q psy12680 69 --LSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LF-RTVAMMVPDYALISEI 143 (2567)
Q Consensus 69 --LSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lF-Rpvam~~PD~~lIaEi 143 (2567)
-.++.+.+..+. .+.. ..++-|+.|-|.- ..|++.+.. -| +-+.+-.||..-..+|
T Consensus 134 ~~~~~~~~lL~~l~-~~~~--------------~~~v~vi~atn~~----~~ld~al~r~gRf~~~i~i~~p~~~~r~~i 194 (301)
T 3cf0_A 134 AADRVINQILTEMD-GMST--------------KKNVFIIGATNRP----DIIDPAILRPGRLDQLIYIPLPDEKSRVAI 194 (301)
T ss_dssp SCCHHHHHHHHHHH-SSCT--------------TSSEEEEEEESCG----GGSCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccC--------------CCCEEEEEecCCc----cccChHHhcCCccceEEecCCcCHHHHHHH
Confidence 223344333332 1111 1234556677742 234444433 33 4578888999887776
Q ss_pred H
Q psy12680 144 I 144 (2567)
Q Consensus 144 ~ 144 (2567)
+
T Consensus 195 l 195 (301)
T 3cf0_A 195 L 195 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.41 E-value=0.00055 Score=74.95 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHHHH
Q psy12680 1323 NIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIM 1402 (2567)
Q Consensus 1323 ~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ie 1402 (2567)
....+..+...+.|++++||+|||||.+++.... .........+ +|+++.++.......++
T Consensus 13 ~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~------------------~~~~~~~~~v-~~~~~~~~~~~~~~~~~ 73 (145)
T 3n70_A 13 YRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ------------------FGRNAQGEFV-YRELTPDNAPQLNDFIA 73 (145)
T ss_dssp HHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHH------------------SSTTTTSCCE-EEECCTTTSSCHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHH------------------hCCccCCCEE-EECCCCCcchhhhcHHH
Confidence 3344555667889999999999999988864211 1111123345 88887665433333222
Q ss_pred hhhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCC---
Q psy12680 1403 SKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST--- 1479 (2567)
Q Consensus 1403 s~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppgg--- 1479 (2567)
...+ .++|+||++.=..+. --.|++.+ .. .-.++.+++++|.+-.
T Consensus 74 ----~a~~----------g~l~ldei~~l~~~~-----q~~Ll~~l-~~------------~~~~~~~I~~t~~~~~~~~ 121 (145)
T 3n70_A 74 ----LAQG----------GTLVLSHPEHLTREQ-----QYHLVQLQ-SQ------------EHRPFRLIGIGDTSLVELA 121 (145)
T ss_dssp ----HHTT----------SCEEEECGGGSCHHH-----HHHHHHHH-HS------------SSCSSCEEEEESSCHHHHH
T ss_pred ----HcCC----------cEEEEcChHHCCHHH-----HHHHHHHH-hh------------cCCCEEEEEECCcCHHHHH
Confidence 2111 368999987433221 12334433 11 0124678888886521
Q ss_pred -CCCCCcchhccccceeccCC
Q psy12680 1480 -GNTVTPRFSRHFNQIVINKF 1499 (2567)
Q Consensus 1480 -g~~is~Rf~r~f~vi~i~~p 1499 (2567)
.....++|...++.+.+.-|
T Consensus 122 ~~~~~~~~L~~rl~~~~i~lP 142 (145)
T 3n70_A 122 ASNHIIAELYYCFAMTQIACL 142 (145)
T ss_dssp HHSCCCHHHHHHHHHHEEECC
T ss_pred HcCCCCHHHHHHhcCCEEeCC
Confidence 12345556555555544444
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.36 E-value=0.0042 Score=77.34 Aligned_cols=119 Identities=17% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHh-------hhhhhhcCccccccccccCCc--hhHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKF-------FKGLIATGAWACFDEFNRIDV--EVLSVVA 73 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~ri-------f~Gl~q~GaW~CFDEfNri~~--~vLSvva 73 (2567)
.||+|||||.+++.+++.+ |.+++.+||++-.+ ...+.+ |......+.-.++||+.+++. .....+-
T Consensus 43 ~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~ 121 (324)
T 1l8q_A 43 YGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFF 121 (324)
T ss_dssp ECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHH
Confidence 6999999999999999999 99999999986432 111111 112223367889999999986 3333332
Q ss_pred HHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc---ccccccCCCHHHHHHHHH
Q psy12680 74 QQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF---RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 74 qqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF---Rpvam~~PD~~lIaEi~L 145 (2567)
..+.. .... +.-+++|-|.....-.++++.|..-| ..+.+-. |..-+.+++-
T Consensus 122 ~~l~~----~~~~---------------~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 122 HIFNT----LYLL---------------EKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp HHHHH----HHHT---------------TCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred HHHHH----HHHC---------------CCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 22221 1111 12345565543333346888898888 4555555 8888777754
No 120
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.28 E-value=0.0033 Score=79.94 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=76.0
Q ss_pred CCCCCCCchhHHHHHHHHh-----------cCeEEEEeCCCCc-c-HHH-----------------------HHHhhhhh
Q psy12680 6 EGPAGTGKTETTKDLAKAV-----------AKLCIVFNCSDSM-D-YIG-----------------------LGKFFKGL 49 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-----------G~~~~vfNCs~~~-d-~~~-----------------------m~rif~Gl 49 (2567)
.||+|||||.+++.+++.+ +.+++.+||++.. + +.. +.+++.-+
T Consensus 51 ~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 130 (384)
T 2qby_B 51 LGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT 130 (384)
T ss_dssp EECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh
Confidence 6999999999999999998 9999999998643 2 111 22333333
Q ss_pred hhcCccccccccccCCchh-HHH-HHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc
Q psy12680 50 IATGAWACFDEFNRIDVEV-LSV-VAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF 127 (2567)
Q Consensus 50 ~q~GaW~CFDEfNri~~~v-LSv-vaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF 127 (2567)
...+.-.++||++++...- ..+ +..... .. +++.+.+|.|..- ....+.+.++.-|
T Consensus 131 ~~~~~vlilDEi~~l~~~~~~~~~l~~l~~----~~-----------------~~~~iI~~t~~~~-~~~~l~~~l~sr~ 188 (384)
T 2qby_B 131 RNIRAIIYLDEVDTLVKRRGGDIVLYQLLR----SD-----------------ANISVIMISNDIN-VRDYMEPRVLSSL 188 (384)
T ss_dssp SSSCEEEEEETTHHHHHSTTSHHHHHHHHT----SS-----------------SCEEEEEECSSTT-TTTTSCHHHHHTC
T ss_pred ccCCCEEEEECHHHhccCCCCceeHHHHhc----CC-----------------cceEEEEEECCCc-hHhhhCHHHHhcC
Confidence 3445578899999986432 222 222111 10 4555666666421 1245666776655
Q ss_pred -ccccccCCCHHHHHHHHH
Q psy12680 128 -RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 128 -Rpvam~~PD~~lIaEi~L 145 (2567)
+.+.+-.|+..-+.+++-
T Consensus 189 ~~~i~l~~l~~~~~~~il~ 207 (384)
T 2qby_B 189 GPSVIFKPYDAEQLKFILS 207 (384)
T ss_dssp CCEEEECCCCHHHHHHHHH
T ss_pred CCeEEECCCCHHHHHHHHH
Confidence 577888888888887754
No 121
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.28 E-value=0.0043 Score=80.84 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=71.6
Q ss_pred CCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccccc------CHHHHHHHHHhhhhc
Q psy12680 1334 QKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQT------SANQTQDIIMSKLDK 1407 (2567)
Q Consensus 1334 ~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~T------ts~~~q~~ies~lek 1407 (2567)
.++++|+||+|||||+++++.... + ...++.+++|.-. ....+..+++...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~------------------~---~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~-- 105 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGE------------------A---NVPFFHISGSDFVELFVGVGAARVRDLFAQAK-- 105 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH------------------H---TCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHH--
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH------------------c---CCCeeeCCHHHHHHHHhcccHHHHHHHHHHHH--
Confidence 367999999999999988753211 1 1112233333221 1222333332211
Q ss_pred ccCCccCCCCCcEEEEEEcCCCCccccc----cCCCC-hHHHHHHHhhc-ccccccCcceeeeeeeeeeeeecCCCCCCC
Q psy12680 1408 RRKGVYGPPLGKRCVVFVDDVNMPLKEE----FGAQP-PIEILRQWLDH-WMWYDRKDVVAVKLIEIQLMCAMGPPSTGN 1481 (2567)
Q Consensus 1408 r~~~~~gp~~gK~~vvFiDDiNmP~~d~----yGtQ~-~ielLRQlid~-~g~ydr~~~~~~~i~diq~v~am~Ppggg~ 1481 (2567)
.+..+|+|+||+..-.... -|..+ ....+.|++.. .|+-. -.++.+++|.|.|.
T Consensus 106 ---------~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--------~~~viVIaaTn~~~--- 165 (476)
T 2ce7_A 106 ---------AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--------KEGIIVMAATNRPD--- 165 (476)
T ss_dssp ---------HTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--------GGTEEEEEEESCGG---
T ss_pred ---------hcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--------CCCEEEEEecCChh---
Confidence 1234899999986432221 12211 12334443321 12211 13577899999873
Q ss_pred CCCcchhc--ccc-ceeccCCCHHHHHHHHHHHH
Q psy12680 1482 TVTPRFSR--HFN-QIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1482 ~is~Rf~r--~f~-vi~i~~p~~~sL~~If~~il 1512 (2567)
.+.|.++| .|. .+.++.|+.+.-..|+...+
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 35555554 343 67789999988888776544
No 122
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.23 E-value=0.0052 Score=77.70 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=49.2
Q ss_pred EEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeee-eeeeeeeeec--CCCCCCCCCCcchhccccceec
Q psy12680 1420 RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVK-LIEIQLMCAM--GPPSTGNTVTPRFSRHFNQIVI 1496 (2567)
Q Consensus 1420 ~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~-i~diq~v~am--~Ppggg~~is~Rf~r~f~vi~i 1496 (2567)
..|+|+||++.-.. .....|...++.... ...+.. -..+.++++. +++ ..+++.+.+.|.++.+
T Consensus 190 ~~vl~IDEi~~l~~------~~~~~L~~~le~~~~----~~~ii~t~~~~~~i~~t~~~~~---~~l~~~l~sR~~~i~~ 256 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI------ESFSFLNRALESDMA----PVLIMATNRGITRIRGTSYQSP---HGIPIDLLDRLLIVST 256 (368)
T ss_dssp BCEEEEESGGGSBH------HHHHHHHHHTTCTTC----CEEEEEESCSEEECBTSSCEEE---TTCCHHHHTTEEEEEE
T ss_pred CceEEEhhccccCh------HHHHHHHHHhhCcCC----CeeeeecccceeeeeccCCCCc---ccCCHHHHhhccEEEe
Confidence 36999999985432 234555566553211 110000 0122233322 112 3477889999999999
Q ss_pred cCCCHHHHHHHHHHHHHh
Q psy12680 1497 NKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1497 ~~p~~~sL~~If~~il~~ 1514 (2567)
+.|+.+.+..|+...+..
T Consensus 257 ~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 257 TPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999876643
No 123
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0048 Score=79.15 Aligned_cols=61 Identities=26% Similarity=0.256 Sum_probs=48.8
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhh-hcCccccccccccC
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLI-ATGAWACFDEFNRI 64 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~-q~GaW~CFDEfNri 64 (2567)
-.+||+|||||.++|++|..+|.+++.++|++-++ -+.+..+|.-.- .+.|=..|||+.-+
T Consensus 210 LL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i 277 (428)
T 4b4t_K 210 LLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSI 277 (428)
T ss_dssp EEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhh
Confidence 35799999999999999999999999999998554 355667776543 34577778999754
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.18 E-value=0.0067 Score=78.81 Aligned_cols=121 Identities=16% Similarity=0.097 Sum_probs=77.9
Q ss_pred CCCCCCCCchhHHHHHHHHh-----cCeEEEEeCCCCccHHHHH--------HhhhhhhhcCccccccccccCCc--hhH
Q psy12680 5 PEGPAGTGKTETTKDLAKAV-----AKLCIVFNCSDSMDYIGLG--------KFFKGLIATGAWACFDEFNRIDV--EVL 69 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l-----G~~~~vfNCs~~~d~~~m~--------rif~Gl~q~GaW~CFDEfNri~~--~vL 69 (2567)
..||+|||||.+++.+|+.+ |..++.++|++-.+ ...+ .+...+.....-.++||+.++.. ...
T Consensus 135 l~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q 213 (440)
T 2z4s_A 135 IYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQ 213 (440)
T ss_dssp EECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHH
Confidence 36999999999999999999 88999999987422 1111 11111111567889999999986 332
Q ss_pred HHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcc---ccccccCCCHHHHHHHHH
Q psy12680 70 SVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLF---RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 70 Svvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lF---Rpvam~~PD~~lIaEi~L 145 (2567)
..+-..+ +.+... +..++||.|..+..-..+.+.|.+-| +.+.+-.||...+.+++.
T Consensus 214 ~~l~~~l----~~l~~~---------------~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 214 TELFHTF----NELHDS---------------GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp HHHHHHH----HHHHTT---------------TCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred HHHHHHH----HHHHHC---------------CCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 2222222 222211 12345555532222234788899878 689999999999888864
No 125
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.013 Score=74.48 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=76.7
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccCC-----------c
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRID-----------V 66 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri~-----------~ 66 (2567)
.+||+|||||-++|++|..+|.+++..+|++-++ -+.+..+|.-... +.|=..|||+.-|- .
T Consensus 221 LyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~ 300 (437)
T 4b4t_I 221 LYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300 (437)
T ss_dssp EESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCC
T ss_pred eECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccH
Confidence 4799999999999999999999999999998654 3455566655433 45677899998662 3
Q ss_pred hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHHH
Q psy12680 67 EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISEI 143 (2567)
Q Consensus 67 ~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaEi 143 (2567)
++-.++++.+..+. ..... .+.-|+.|-|- ...|++.|.. +=|-|.+-.||..--.+|
T Consensus 301 ~~~~~l~~LL~~lD-g~~~~--------------~~ViVIaATNr----pd~LDpALlRpGRfD~~I~v~lPd~~~R~~I 361 (437)
T 4b4t_I 301 EIQRTMLELLNQLD-GFDDR--------------GDVKVIMATNK----IETLDPALIRPGRIDRKILFENPDLSTKKKI 361 (437)
T ss_dssp HHHHHHHHHHHHHH-HCCCS--------------SSEEEEEEESC----STTCCTTSSCTTTEEEEECCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CcCCC--------------CCEEEEEeCCC----hhhcCHHHhcCCceeEEEEcCCcCHHHHHHH
Confidence 44555555554442 21111 12223455551 1123333321 122478889999877776
Q ss_pred H
Q psy12680 144 I 144 (2567)
Q Consensus 144 ~ 144 (2567)
+
T Consensus 362 l 362 (437)
T 4b4t_I 362 L 362 (437)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.15 E-value=0.0017 Score=82.18 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=48.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHH----HHHhhhhhh---------hcCccccccccccCCch
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIG----LGKFFKGLI---------ATGAWACFDEFNRIDVE 67 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~----m~rif~Gl~---------q~GaW~CFDEfNri~~~ 67 (2567)
.||+|||||.+++.+|+.+|.+++.+||++-..... .++.+.++. ..|+-..+||++.+..+
T Consensus 57 ~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 57 IGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK 131 (363)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence 699999999999999999999999999987553221 233343332 24667889999999877
No 127
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.14 E-value=0.0083 Score=87.04 Aligned_cols=90 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHH
Q psy12680 2343 EALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTA 2422 (2567)
Q Consensus 2343 ~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~ 2422 (2567)
+++.++++++...+.++...+.++..++++++.++.+..+...+.++++.+++..+..++....-...|..++..-...+
T Consensus 1074 ~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~el 1153 (1184)
T 1i84_S 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444444444444444444444444444444455555555556
Q ss_pred HHHHHHhhcc
Q psy12680 2423 KMLNEKYYQL 2432 (2567)
Q Consensus 2423 ~~l~~~~~~l 2432 (2567)
+.++.++..+
T Consensus 1154 e~L~~~Ieel 1163 (1184)
T 1i84_S 1154 EALKTELEDT 1163 (1184)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 128
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.01 Score=73.29 Aligned_cols=116 Identities=7% Similarity=0.034 Sum_probs=70.8
Q ss_pred CCCCCCCchhHHHHHHHHhc----------CeEEEEeCCCCcc----------------------HHHHHHhhhhh--hh
Q psy12680 6 EGPAGTGKTETTKDLAKAVA----------KLCIVFNCSDSMD----------------------YIGLGKFFKGL--IA 51 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG----------~~~~vfNCs~~~d----------------------~~~m~rif~Gl--~q 51 (2567)
.||+|||||.+++.+++.|+ ..++-.||..-.+ ...+.++|..+ ..
T Consensus 51 ~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~ 130 (318)
T 3te6_A 51 TNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAK 130 (318)
T ss_dssp ECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGG
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcc
Confidence 59999999999999999994 4677889987443 33456666654 22
Q ss_pred c-CccccccccccCC-chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhh-----Hh
Q psy12680 52 T-GAWACFDEFNRID-VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDN-----LK 124 (2567)
Q Consensus 52 ~-GaW~CFDEfNri~-~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdn-----Lk 124 (2567)
. ..=.++||++++. .++|-- .+ +....... ...+..+.| ..++|+. ++
T Consensus 131 ~~~~ii~lDE~d~l~~q~~L~~---l~----~~~~~~~s-------------~~~vI~i~n-----~~d~~~~~L~~~v~ 185 (318)
T 3te6_A 131 KRKTLILIQNPENLLSEKILQY---FE----KWISSKNS-------------KLSIICVGG-----HNVTIREQINIMPS 185 (318)
T ss_dssp SCEEEEEEECCSSSCCTHHHHH---HH----HHHHCSSC-------------CEEEEEECC-----SSCCCHHHHHTCHH
T ss_pred CCceEEEEecHHHhhcchHHHH---HH----hcccccCC-------------cEEEEEEec-----Ccccchhhcchhhh
Confidence 2 2466799999996 222211 11 11111111 122233334 4567764 24
Q ss_pred hcc--ccccccCCCHHHHHHHHHH
Q psy12680 125 SLF--RTVAMMVPDYALISEIIVK 146 (2567)
Q Consensus 125 ~lF--Rpvam~~PD~~lIaEi~L~ 146 (2567)
+=| +.+.+-.++..-|.+|+-.
T Consensus 186 SR~~~~~i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 186 LKAHFTEIKLNKVDKNELQQMIIT 209 (318)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHH
T ss_pred ccCCceEEEeCCCCHHHHHHHHHH
Confidence 445 4477888888889888753
No 129
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.05 E-value=0.0065 Score=76.88 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=75.0
Q ss_pred CCCCCCCCchhHHHHHHHHh------cCeEEEEeCCCCcc----------------------HHH-HHHhhhhhhhc--C
Q psy12680 5 PEGPAGTGKTETTKDLAKAV------AKLCIVFNCSDSMD----------------------YIG-LGKFFKGLIAT--G 53 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l------G~~~~vfNCs~~~d----------------------~~~-m~rif~Gl~q~--G 53 (2567)
..||+|||||.+++.+++.+ +..++.+||.+..+ ... +.+++.-+... .
T Consensus 50 i~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 129 (386)
T 2qby_A 50 IYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQ 129 (386)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCe
Confidence 36999999999999999999 99999999975332 222 33333333333 4
Q ss_pred ccccccccccCC----chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCcee-EEEEeCCCCCCCCCchhhHhhcc-
Q psy12680 54 AWACFDEFNRID----VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCS-VFITMNPGYAGRSELPDNLKSLF- 127 (2567)
Q Consensus 54 aW~CFDEfNri~----~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~-iFiTmNPgYaGRseLPdnLk~lF- 127 (2567)
...++||+..+. .+++..+...+... .. .++. |++|-++++. ..+.+.+++-|
T Consensus 130 ~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------~~-------------~~~~~I~~~~~~~~~--~~~~~~~~~r~~ 188 (386)
T 2qby_A 130 VVIVLDEIDAFVKKYNDDILYKLSRINSEV------NK-------------SKISFIGITNDVKFV--DLLDPRVKSSLS 188 (386)
T ss_dssp EEEEEETHHHHHHSSCSTHHHHHHHHHHSC------CC---------------EEEEEEESCGGGG--GGCTTHHHHTTT
T ss_pred EEEEEcChhhhhccCcCHHHHHHhhchhhc------CC-------------CeEEEEEEECCCChH--hhhCHHHhccCC
Confidence 578899999886 44444443332211 11 1223 3444334432 23555666666
Q ss_pred -ccccccCCCHHHHHHHHH
Q psy12680 128 -RTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 128 -Rpvam~~PD~~lIaEi~L 145 (2567)
|.+.+-.++..-+.+++-
T Consensus 189 ~~~i~l~~l~~~~~~~il~ 207 (386)
T 2qby_A 189 EEEIIFPPYNAEELEDILT 207 (386)
T ss_dssp TEEEEECCCCHHHHHHHHH
T ss_pred CeeEEeCCCCHHHHHHHHH
Confidence 678888899988887754
No 130
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.04 E-value=0.01 Score=86.09 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=16.9
Q ss_pred hcCCCeEEecCCCCCccceee
Q psy12680 779 THQKPVMFIGPTGTGKSCYIT 799 (2567)
Q Consensus 779 ~~~~pvll~G~~GtGKT~~i~ 799 (2567)
...+.|++.|+||+|||...+
T Consensus 167 ~~~Q~i~isGeSGaGKTe~~k 187 (1184)
T 1i84_S 167 REDQSILCTGESGAGKTENTK 187 (1184)
T ss_dssp TCCEEEECCCSTTSSTTHHHH
T ss_pred CCCcEEEEecCCCCCccHHHH
Confidence 467889999999999996544
No 131
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0075 Score=77.40 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhh-hhcCccccccccccC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGL-IATGAWACFDEFNRI 64 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl-~q~GaW~CFDEfNri 64 (2567)
.+||+|||||-++|++|..+|.+++..+|++-++ -+.+..+|.-. ..+.|=..|||+.-|
T Consensus 220 LyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal 286 (434)
T 4b4t_M 220 MYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAI 286 (434)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHH
T ss_pred EECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhh
Confidence 4799999999999999999999999999998554 34556666533 345677888998765
No 132
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.96 E-value=0.0083 Score=72.96 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=75.9
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhh-hcCccccccccccCCc----------
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLI-ATGAWACFDEFNRIDV---------- 66 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~-q~GaW~CFDEfNri~~---------- 66 (2567)
...||+|||||.++|.++..++...+.++|++-.+ .+.++.+|.... ...+-.++||+..+..
T Consensus 77 ll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~ 156 (278)
T 1iy2_A 77 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 156 (278)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------C
T ss_pred EEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcc
Confidence 35799999999999999999999999999865221 234566666554 2346788999976632
Q ss_pred -hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHH
Q psy12680 67 -EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISE 142 (2567)
Q Consensus 67 -~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaE 142 (2567)
+....+.+.+..+....+ .+ .-..+-+|.+|. .|++.|.. ..|-|.+-.||.....+
T Consensus 157 ~~~~~~~~~ll~~lsgg~~---~~-----------~~i~~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~ 217 (278)
T 1iy2_A 157 DEREQTLNQLLVEMDGFEK---DT-----------AIVVMAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQ 217 (278)
T ss_dssp HHHHHHHHHHHHHHTTCCT---TC-----------CEEEEEEESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCC---CC-----------CEEEEEecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHH
Confidence 222233333322211100 00 012334444553 37777764 44778999999988877
Q ss_pred HH
Q psy12680 143 II 144 (2567)
Q Consensus 143 i~ 144 (2567)
|+
T Consensus 218 il 219 (278)
T 1iy2_A 218 IL 219 (278)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 133
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.95 E-value=0.019 Score=73.27 Aligned_cols=204 Identities=13% Similarity=0.162 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHHHHH
Q psy12680 1321 LRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDI 1400 (2567)
Q Consensus 1321 ~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~q~~ 1400 (2567)
.+....+..+.....|++++|++|||||.+.+..... .+...-..+.+||++-. .+.
T Consensus 147 ~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~------------------s~r~~~~fv~v~~~~~~-----~~~ 203 (387)
T 1ny5_A 147 KEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL------------------SDRSKEPFVALNVASIP-----RDI 203 (387)
T ss_dssp HHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH------------------STTTTSCEEEEETTTSC-----HHH
T ss_pred hHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh------------------cCCCCCCeEEEecCCCC-----HHH
Confidence 3344455566678899999999999999876532111 01112245778998755 345
Q ss_pred HHhhhhcccCCccCCCC---------CcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeee
Q psy12680 1401 IMSKLDKRRKGVYGPPL---------GKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLM 1471 (2567)
Q Consensus 1401 ies~lekr~~~~~gp~~---------gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v 1471 (2567)
+++.|--..++.|.-.. ...-++|+|+|.--.. ....-|-++++.+-+..... .-..-.|+.++
T Consensus 204 ~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~------~~q~~Ll~~l~~~~~~~~g~-~~~~~~~~rii 276 (387)
T 1ny5_A 204 FEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL------EAQAKLLRVIESGKFYRLGG-RKEIEVNVRIL 276 (387)
T ss_dssp HHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH------HHHHHHHHHHHHSEECCBTC-CSBEECCCEEE
T ss_pred HHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH------HHHHHHHHHHhcCcEEeCCC-CceeeccEEEE
Confidence 66666655444432111 1124889998763211 23344555666655543222 22233688899
Q ss_pred eecCCCCC----CCCCCcchhccccceeccCCCH----HHHHHHHHHHHHhhhcccCCcccchhHHHHHHHHHHHHHHHH
Q psy12680 1472 CAMGPPST----GNTVTPRFSRHFNQIVINKFDD----DTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIFKES 1543 (2567)
Q Consensus 1472 ~am~Ppgg----g~~is~Rf~r~f~vi~i~~p~~----~sL~~If~~il~~~l~~~gf~~~v~~~~~~lv~ati~ly~~v 1543 (2567)
+|+|.+-. .+...+.|...++++.+.-|+- +.+..+...++..+-...+ ..+..+.+....+. .
T Consensus 277 ~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~--~~~~~~~~~a~~~l-~----- 348 (387)
T 1ny5_A 277 AATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYA--KEVEGFTKSAQELL-L----- 348 (387)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTT--CCCCEECHHHHHHH-H-----
T ss_pred EeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHH-H-----
Confidence 99997521 1334566766777776666653 4555555555543321111 11111111111111 0
Q ss_pred HhhcCCCCCCcccccCchhHHHHHHHHh
Q psy12680 1544 LLNLLPTPTKSHYLFNLRDFARVIQGVL 1571 (2567)
Q Consensus 1544 ~~~~lPTp~k~HY~FnlRDlsrv~qGll 1571 (2567)
..+|-.|.|+|.++++-.+
T Consensus 349 ---------~~~wpGNvreL~~~i~~~~ 367 (387)
T 1ny5_A 349 ---------SYPWYGNVRELKNVIERAV 367 (387)
T ss_dssp ---------HSCCTTHHHHHHHHHHHHH
T ss_pred ---------hCCCCcHHHHHHHHHHHHH
Confidence 1356679999999888644
No 134
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.016 Score=74.25 Aligned_cols=122 Identities=21% Similarity=0.244 Sum_probs=77.6
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhh-hhcCccccccccccCC-----------
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGL-IATGAWACFDEFNRID----------- 65 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl-~q~GaW~CFDEfNri~----------- 65 (2567)
-.+||+|||||.++|++|..+|.+++..+|++-++ -+.+..+|.-. ..+.|=..|||+.-|-
T Consensus 247 LLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~ 326 (467)
T 4b4t_H 247 LLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGD 326 (467)
T ss_dssp EECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGG
T ss_pred EeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCcc
Confidence 35899999999999999999999999999998654 34566666644 3456778899998662
Q ss_pred chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHH
Q psy12680 66 VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISE 142 (2567)
Q Consensus 66 ~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaE 142 (2567)
.++..++.+.+..+.. .... .++-++.|-|- -..|++.|.. +=|-|.+-.||..--.+
T Consensus 327 ~~~~~~l~~lL~~lDg-~~~~--------------~~ViVIaATNr----pd~LDpALlRpGRFD~~I~i~lPd~~~R~~ 387 (467)
T 4b4t_H 327 NEVQRTMLELITQLDG-FDPR--------------GNIKVMFATNR----PNTLDPALLRPGRIDRKVEFSLPDLEGRAN 387 (467)
T ss_dssp GHHHHHHHHHHHHHHS-SCCT--------------TTEEEEEECSC----TTSBCHHHHSTTTCCEEECCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-cCCC--------------CcEEEEeCCCC----cccCChhhhccccccEEEEeCCcCHHHHHH
Confidence 2334455555544421 1111 12223445451 1234444432 22457888899987777
Q ss_pred HH
Q psy12680 143 II 144 (2567)
Q Consensus 143 i~ 144 (2567)
|+
T Consensus 388 Il 389 (467)
T 4b4t_H 388 IF 389 (467)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 135
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.91 E-value=0.0094 Score=71.37 Aligned_cols=122 Identities=19% Similarity=0.217 Sum_probs=74.3
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhh-hcCccccccccccCCch---------
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLI-ATGAWACFDEFNRIDVE--------- 67 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~-q~GaW~CFDEfNri~~~--------- 67 (2567)
...||+|||||.++|.++..++...+.++|++-.+ .+.++.+|.-.. ...+..++||++.+...
T Consensus 53 ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~ 132 (254)
T 1ixz_A 53 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 132 (254)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------C
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccc
Confidence 35799999999999999999999999999864221 234556665543 23467889999766321
Q ss_pred --hHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHH
Q psy12680 68 --VLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISE 142 (2567)
Q Consensus 68 --vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaE 142 (2567)
....+.+.+..+....+ .+ .-..+-.|.+|.. |++.|.. +.|-|.+-.||.....+
T Consensus 133 ~~~~~~~~~ll~~l~g~~~---~~-----------~~i~~a~t~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~ 193 (254)
T 1ixz_A 133 DEREQTLNQLLVEMDGFEK---DT-----------AIVVMAATNRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQ 193 (254)
T ss_dssp HHHHHHHHHHHHHHHTCCT---TC-----------CEEEEEEESCGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCC---CC-----------CEEEEEccCCchh-----CCHHHcCCCcCCeEEeeCCcCHHHHHH
Confidence 12223333322221100 01 0123344445532 6666664 34668899999988777
Q ss_pred HH
Q psy12680 143 II 144 (2567)
Q Consensus 143 i~ 144 (2567)
|+
T Consensus 194 il 195 (254)
T 1ixz_A 194 IL 195 (254)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 136
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.80 E-value=4.4 Score=47.87 Aligned_cols=85 Identities=9% Similarity=0.056 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH
Q psy12680 2345 LRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKM 2424 (2567)
Q Consensus 2345 l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~ 2424 (2567)
+..+...+......+......+..+++.+..++.+++....+...+..++...+..+..+..-+..+..+..+....+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
T 1c1g_A 197 IKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHh
Q psy12680 2425 LNEKY 2429 (2567)
Q Consensus 2425 l~~~~ 2429 (2567)
+...+
T Consensus 277 ~~~~L 281 (284)
T 1c1g_A 277 ALNDM 281 (284)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 137
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.028 Score=71.16 Aligned_cols=121 Identities=19% Similarity=0.221 Sum_probs=79.1
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhh-cCccccccccccCC-----------c
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIA-TGAWACFDEFNRID-----------V 66 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q-~GaW~CFDEfNri~-----------~ 66 (2567)
.+||+|||||-++|++|..+|.+++..+|++-++ -+.+..+|.=... +-|=..|||++-|- .
T Consensus 187 L~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~ 266 (405)
T 4b4t_J 187 LYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDS 266 (405)
T ss_dssp EESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGG
T ss_pred EeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcH
Confidence 4799999999999999999999999999998664 4556677765533 34566789999773 2
Q ss_pred hhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHHH
Q psy12680 67 EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISEI 143 (2567)
Q Consensus 67 ~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaEi 143 (2567)
++-.++++.+..+.. .... .+.-|+.|-|- -..|++.|.. +=|-|.+-.||..--.+|
T Consensus 267 ~~~~~l~~lL~~lDg-~~~~--------------~~V~vIaATNr----pd~LDpAllRpGRfD~~I~i~lPd~~~R~~I 327 (405)
T 4b4t_J 267 EVQRTMLELLNQLDG-FETS--------------KNIKIIMATNR----LDILDPALLRPGRIDRKIEFPPPSVAARAEI 327 (405)
T ss_dssp HHHHHHHHHHHHHHT-TTCC--------------CCEEEEEEESC----SSSSCHHHHSTTSSCCEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhhc-cCCC--------------CCeEEEeccCC----hhhCCHhHcCCCcCceEEEcCCcCHHHHHHH
Confidence 344555555554432 1111 12223445551 1235554442 335688889999877776
Q ss_pred H
Q psy12680 144 I 144 (2567)
Q Consensus 144 ~ 144 (2567)
+
T Consensus 328 l 328 (405)
T 4b4t_J 328 L 328 (405)
T ss_dssp H
T ss_pred H
Confidence 3
No 138
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.75 E-value=0.021 Score=69.29 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=75.8
Q ss_pred CCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccH------HHHHHhhhhh-hhcCccccccccccCCch-------hH
Q psy12680 4 APEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY------IGLGKFFKGL-IATGAWACFDEFNRIDVE-------VL 69 (2567)
Q Consensus 4 ap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~------~~m~rif~Gl-~q~GaW~CFDEfNri~~~-------vL 69 (2567)
...||+|||||.++|.+|..+|...+.++|++-.+. +.++.+|.-. ....+...+||++.+-.. .+
T Consensus 48 lL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~ 127 (274)
T 2x8a_A 48 LLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS 127 (274)
T ss_dssp EEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------C
T ss_pred EEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHH
Confidence 457999999999999999999999999999876542 3567777664 344577889999876321 11
Q ss_pred -HHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHh---hccccccccCCCHHHHHHHH
Q psy12680 70 -SVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLK---SLFRTVAMMVPDYALISEII 144 (2567)
Q Consensus 70 -Svvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk---~lFRpvam~~PD~~lIaEi~ 144 (2567)
.++.+.+..+....+ + +. -..+-+|-+|.. |.+.+. .+=|.|.+-.||..-..+|+
T Consensus 128 ~~~~~~~l~~Lsgg~~-~--~~-----------~i~ia~tn~p~~-----LD~al~r~gRfd~~i~~~~P~~~~r~~il 187 (274)
T 2x8a_A 128 VRVVNQLLTEMDGLEA-R--QQ-----------VFIMAATNRPDI-----IDPAILRPGRLDKTLFVGLPPPADRLAIL 187 (274)
T ss_dssp TTHHHHHHHHHHTCCS-T--TC-----------EEEEEEESCGGG-----SCHHHHSTTSSCEEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHhhhcccc-c--CC-----------EEEEeecCChhh-----CCHhhcCcccCCeEEEeCCcCHHHHHHHH
Confidence 122222222211111 1 00 123344545543 455554 23356788899998887774
No 139
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.56 E-value=0.023 Score=71.80 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=77.1
Q ss_pred CCCCCCCCchhHHHHHHHHhcCe------------------------EEEEeCCCCccHHHHHHhhhhhhhc-----Ccc
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKL------------------------CIVFNCSDSMDYIGLGKFFKGLIAT-----GAW 55 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~------------------------~~vfNCs~~~d~~~m~rif~Gl~q~-----GaW 55 (2567)
..||+|||||.+++.+++.++.. ++.++++.......+..++.-+... ..-
T Consensus 43 l~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 122 (373)
T 1jr3_A 43 FSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122 (373)
T ss_dssp EESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEE
Confidence 47999999999999999999752 3555665444444555555554422 346
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCC
Q psy12680 56 ACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVP 135 (2567)
Q Consensus 56 ~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~P 135 (2567)
..+||+++++.+.+..+...+.. . .+++-+.++-|- ...++..+++-++.+.+-.|
T Consensus 123 liiDe~~~l~~~~~~~Ll~~le~-------~-------------~~~~~~Il~~~~----~~~l~~~l~sr~~~i~~~~l 178 (373)
T 1jr3_A 123 YLIDEVHMLSRHSFNALLKTLEE-------P-------------PEHVKFLLATTD----PQKLPVTILSRCLQFHLKAL 178 (373)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHS-------C-------------CSSEEEEEEESC----GGGSCHHHHTTSEEEECCCC
T ss_pred EEEECcchhcHHHHHHHHHHHhc-------C-------------CCceEEEEEeCC----hHhCcHHHHhheeEeeCCCC
Confidence 78999999998766655444421 1 112222333331 22577888888889999999
Q ss_pred CHHHHHHHHH
Q psy12680 136 DYALISEIIV 145 (2567)
Q Consensus 136 D~~lIaEi~L 145 (2567)
+..-+.+++-
T Consensus 179 ~~~~~~~~l~ 188 (373)
T 1jr3_A 179 DVEQIRHQLE 188 (373)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9988877754
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.46 E-value=0.019 Score=72.93 Aligned_cols=123 Identities=16% Similarity=0.183 Sum_probs=76.2
Q ss_pred CCCCCCCCchhHHHHHHHHh----cCeEEEEeCCCCccHH-HHHHhhhhh----------------------hhc--Ccc
Q psy12680 5 PEGPAGTGKTETTKDLAKAV----AKLCIVFNCSDSMDYI-GLGKFFKGL----------------------IAT--GAW 55 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l----G~~~~vfNCs~~~d~~-~m~rif~Gl----------------------~q~--GaW 55 (2567)
..||+|||||.+++.+++.+ +..++.+||++..+.. .+..++..+ ... ..-
T Consensus 49 i~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v 128 (389)
T 1fnn_A 49 LLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 128 (389)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 36999999999999999999 7889999999877532 222222211 111 347
Q ss_pred ccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeC-CCCCCCCCchhhHhhcccc--ccc
Q psy12680 56 ACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMN-PGYAGRSELPDNLKSLFRT--VAM 132 (2567)
Q Consensus 56 ~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmN-PgYaGRseLPdnLk~lFRp--vam 132 (2567)
.++||++.++.+++..+...+..... .+ ..++.+.++.| |.... .+.+.++.-|.+ +.+
T Consensus 129 lilDE~~~l~~~~~~~L~~~~~~~~~---~~-------------~~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~ 190 (389)
T 1fnn_A 129 LVLDDAFNLAPDILSTFIRLGQEADK---LG-------------AFRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRF 190 (389)
T ss_dssp EEEETGGGSCHHHHHHHHHHTTCHHH---HS-------------SCCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEEC
T ss_pred EEEECccccchHHHHHHHHHHHhCCC---CC-------------cCCEEEEEEECCchHHH--HhCHHhhhcCCCceEEe
Confidence 88999999987777666555432211 00 01233444444 32211 245555555554 777
Q ss_pred cCCCHHHHHHHHH
Q psy12680 133 MVPDYALISEIIV 145 (2567)
Q Consensus 133 ~~PD~~lIaEi~L 145 (2567)
-.++..-+.+++.
T Consensus 191 ~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 191 SPYTKDQIFDILL 203 (389)
T ss_dssp CCCBHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 7778777777754
No 141
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.41 E-value=0.028 Score=73.28 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccH------HHHHHhhhhh-hhcCccccccccccCCchh---------
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY------IGLGKFFKGL-IATGAWACFDEFNRIDVEV--------- 68 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~------~~m~rif~Gl-~q~GaW~CFDEfNri~~~v--------- 68 (2567)
..||+|||||.++|.+|..+|.+++.+||++-.+. +.+..+|.-+ ....+-.++||++.|....
T Consensus 54 L~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~ 133 (476)
T 2ce7_A 54 LVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133 (476)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------C
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcH
Confidence 36999999999999999999999999999986542 1222333332 2245788999999886532
Q ss_pred --HHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh--cc-ccccccCCCHHHHHHH
Q psy12680 69 --LSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS--LF-RTVAMMVPDYALISEI 143 (2567)
Q Consensus 69 --LSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~--lF-Rpvam~~PD~~lIaEi 143 (2567)
..++.+.+..+.. ... +.++-|+.|-|+- ..|++.|.. -| |-|.+-.||..-..+|
T Consensus 134 ~~~~~l~~LL~~ld~-~~~--------------~~~viVIaaTn~~----~~Ld~allR~gRFd~~i~i~~Pd~~~R~~I 194 (476)
T 2ce7_A 134 EREQTLNQLLVEMDG-FDS--------------KEGIIVMAATNRP----DILDPALLRPGRFDKKIVVDPPDMLGRKKI 194 (476)
T ss_dssp HHHHHHHHHHHHHHH-SCG--------------GGTEEEEEEESCG----GGSCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCC--------------CCCEEEEEecCCh----hhhchhhcccCcceeEeecCCCCHHHHHHH
Confidence 2333444433321 100 1234456666741 123333322 22 2677788998776665
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.40 E-value=0.06 Score=67.88 Aligned_cols=136 Identities=14% Similarity=0.147 Sum_probs=75.2
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEE----EEEeccCCCCcCcccccccCCCCCCCcchHHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVE----IIVINPKSITMGQLYGQFDAVSHEWSDGILAVSY 438 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~----~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~ 438 (2567)
...|.+++.||+|+|||++.+.+++++..-. .....+.. ...+. .-...++++ ++.......| -+..++
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~-~~~~l~ 108 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCET---GITATPCGVCDNCREIE--QGRFVDLIE-IDAASRTKVE-DTRDLL 108 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTT---CSCSSCCSSSHHHHHHH--TSCCSSCEE-EETTCSCCSS-CHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCC---CCCCCCCcccHHHHHHh--ccCCCceEE-ecccccCCHH-HHHHHH
Confidence 3468899999999999999999998873100 00000000 00000 000011111 1222212222 233444
Q ss_pred HHHHhcC-CCCceEEEeCCC--CCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcceeeeceeEEe
Q psy12680 439 RQFAMSQ-NENRKWLIFDGP--VDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYM 515 (2567)
Q Consensus 439 R~~~~~~-~~~~~WivfDGp--VDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPATVSRcGmVy~ 515 (2567)
..+.... ....+.||+|.- ++..-.+.|-..|++ .|+++.+|+-+.+.....|+-.|||-.+.+
T Consensus 109 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~ 175 (373)
T 1jr3_A 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 (373)
T ss_dssp HHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred HHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChHhCcHHHHhheeEeeC
Confidence 4433222 234688999962 344444555555544 356788888888888888899999988888
Q ss_pred cCC
Q psy12680 516 EPA 518 (2567)
Q Consensus 516 ~~~ 518 (2567)
.+-
T Consensus 176 ~~l 178 (373)
T 1jr3_A 176 KAL 178 (373)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 143
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.32 E-value=6.4 Score=46.47 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHH
Q psy12680 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSST 2421 (2567)
Q Consensus 2342 ~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~ 2421 (2567)
..++..++..+......+...+..+..+...+..++.++.....+...++.++...+..+.....-+..+..+..+....
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (284)
T 1c1g_A 187 EGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 266 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhhcch
Q psy12680 2422 AKMLNEKYYQLT 2433 (2567)
Q Consensus 2422 ~~~l~~~~~~l~ 2433 (2567)
...+..++..+.
T Consensus 267 ~~~~~~~~~~~~ 278 (284)
T 1c1g_A 267 YKAISEELDHAL 278 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 144
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.23 E-value=0.021 Score=74.74 Aligned_cols=121 Identities=20% Similarity=0.221 Sum_probs=73.9
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhh-hcCccccccccccCCch----------
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLI-ATGAWACFDEFNRIDVE---------- 67 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~-q~GaW~CFDEfNri~~~---------- 67 (2567)
..||+|||||.++|.+|..++.+++.+||++-.+ .+.++.+|.-.. ...+-.++||++.+...
T Consensus 69 L~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~ 148 (499)
T 2dhr_A 69 LVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND 148 (499)
T ss_dssp EECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcH
Confidence 4799999999999999999999999999987443 123455555442 23467889999887532
Q ss_pred -hHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhh---ccccccccCCCHHHHHHH
Q psy12680 68 -VLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKS---LFRTVAMMVPDYALISEI 143 (2567)
Q Consensus 68 -vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~---lFRpvam~~PD~~lIaEi 143 (2567)
....+.+.+..+... . -+...-+..|.|+- ..|++.|.. ..|-|.+-.||..-..+|
T Consensus 149 e~~~~l~~LL~~Ldg~-~--------------~~~~viviAatn~p----~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~I 209 (499)
T 2dhr_A 149 EREQTLNQLLVEMDGF-E--------------KDTAIVVMAATNRP----DILDPALLRPGRFDRQIAIDAPDVKGREQI 209 (499)
T ss_dssp HHHHHHHHHHHHGGGC-C--------------SSCCCEEEECCSCG----GGSCTTTSSTTSSCCEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-c--------------cCccEEEEEecCCh----hhcCcccccccccceEEecCCCCHHHHHHH
Confidence 223333333322111 0 01112233444431 115555543 335678899999888776
Q ss_pred H
Q psy12680 144 I 144 (2567)
Q Consensus 144 ~ 144 (2567)
+
T Consensus 210 L 210 (499)
T 2dhr_A 210 L 210 (499)
T ss_dssp H
T ss_pred H
Confidence 3
No 145
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.15 E-value=0.074 Score=66.41 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=84.1
Q ss_pred HHHHHhceEEEEEccCCCChhHHHHHHHHHHHHHHHhc--ccC----------CccEEEEEeccCCCCcCcccccccCCC
Q psy12680 359 YEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWG--ELG----------EHKVEIIVINPKSITMGQLYGQFDAVS 426 (2567)
Q Consensus 359 ye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~--~~~----------~~~v~~~~inPKait~~eLyG~~d~~T 426 (2567)
...-...|++++.||+|+|||++.+.+++++.--...+ ..+ +.....+.++|.. ..
T Consensus 18 i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~------------~~ 85 (334)
T 1a5t_A 18 YQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK------------GK 85 (334)
T ss_dssp HHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT------------TC
T ss_pred HHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc------------cC
Confidence 33345679999999999999999999999873100000 000 0001233444431 01
Q ss_pred CCCCcchHHHHHHHHHhcC-CCCceEEEeCCCCCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCcCCcc
Q psy12680 427 HEWSDGILAVSYRQFAMSQ-NENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPA 505 (2567)
Q Consensus 427 ~EW~DGvls~i~R~~~~~~-~~~~~WivfDGpVDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ASPA 505 (2567)
.+-.-..+-.+++.+...+ ...++-+|+|. +|..=.+..|.+|. +| -. -|+++.+|+=+.+....-|+
T Consensus 86 ~~~~i~~ir~l~~~~~~~~~~~~~kvviIde-ad~l~~~a~naLLk---~l--Ee-----p~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 86 NTLGVDAVREVTEKLNEHARLGGAKVVWVTD-AALLTDAAANALLK---TL--EE-----PPAETWFFLATREPERLLAT 154 (334)
T ss_dssp SSBCHHHHHHHHHHTTSCCTTSSCEEEEESC-GGGBCHHHHHHHHH---HH--TS-----CCTTEEEEEEESCGGGSCHH
T ss_pred CCCCHHHHHHHHHHHhhccccCCcEEEEECc-hhhcCHHHHHHHHH---Hh--cC-----CCCCeEEEEEeCChHhCcHH
Confidence 1111112223333333222 23578889986 45443445555541 11 10 14678888888888888999
Q ss_pred eeeeceeEEecCCCCchhhhHHhhhhc
Q psy12680 506 TVSRCGMIYMEPATLGWECLVDSWLNT 532 (2567)
Q Consensus 506 TVSRcGmVy~~~~~lgw~~~v~sWl~~ 532 (2567)
-.|||-.+.|.+-+ ..-+..|+..
T Consensus 155 i~SRc~~~~~~~~~---~~~~~~~L~~ 178 (334)
T 1a5t_A 155 LRSRCRLHYLAPPP---EQYAVTWLSR 178 (334)
T ss_dssp HHTTSEEEECCCCC---HHHHHHHHHH
T ss_pred HhhcceeeeCCCCC---HHHHHHHHHH
Confidence 99999999987532 2334566654
No 146
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.15 E-value=0.044 Score=68.57 Aligned_cols=116 Identities=21% Similarity=0.191 Sum_probs=75.8
Q ss_pred CCCCCCCchhHHHHHHHHhc-----CeEEEEeCCCCccHHHHHHhhhhhhhc-------CccccccccccCCchhHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVA-----KLCIVFNCSDSMDYIGLGKFFKGLIAT-------GAWACFDEFNRIDVEVLSVVA 73 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG-----~~~~vfNCs~~~d~~~m~rif~Gl~q~-------GaW~CFDEfNri~~~vLSvva 73 (2567)
.||.|||||.+++.+|+.+. ..++-+|+++......+-+.+.-+++. ..-.++||+.++..+...++.
T Consensus 52 ~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~ 131 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALR 131 (340)
T ss_dssp ECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHH
Confidence 69999999999999999973 347778998865555555555544543 244579999999876544332
Q ss_pred HHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 74 QQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 74 qqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
..+. ... +++-+.++-|+. ..+++.|++-+..+.+-.++..-+.+.+.
T Consensus 132 ~~le-------~~~-------------~~~~~il~~n~~----~~i~~~i~sR~~~~~~~~l~~~~~~~~l~ 179 (340)
T 1sxj_C 132 RVIE-------RYT-------------KNTRFCVLANYA----HKLTPALLSQCTRFRFQPLPQEAIERRIA 179 (340)
T ss_dssp HHHH-------HTT-------------TTEEEEEEESCG----GGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HHHh-------cCC-------------CCeEEEEEecCc----cccchhHHhhceeEeccCCCHHHHHHHHH
Confidence 2222 111 122223333542 36788888888888888888877766643
No 147
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.06 E-value=0.0075 Score=68.18 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=25.9
Q ss_pred CchhhHHHHHHHHHH-----hcCCCcccccCCCCcccceeehh
Q psy12680 1317 TEETLRNIALMKLLV-----THQKPVMFIGPTGTGKSCYITVS 1354 (2567)
Q Consensus 1317 T~dT~R~~~ll~~ll-----~~~~pvll~GptGTGKT~~i~~~ 1354 (2567)
+.........+..++ ..|.+++|+||+|||||++++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHH
Confidence 333333444444444 35789999999999999988653
No 148
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.98 E-value=0.016 Score=74.26 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=78.1
Q ss_pred CCCccc--ccCCCCcccceeehhhhhhccccccccchhhhhhhhhcc------ccccceeeccccccCHHHHHHHHHhhh
Q psy12680 1334 QKPVMF--IGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSI------EQWQPLIMNFSAQTSANQTQDIIMSKL 1405 (2567)
Q Consensus 1334 ~~pvll--~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~------~~~~~~~lnfSa~Tts~~~q~~ies~l 1405 (2567)
+..+++ +||+|+|||++++... +.+.. ..+..+.++++...++..+...+...+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 111 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTV------------------KRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT 111 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHH------------------HHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHH------------------HHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446788 9999999999886432 11211 134556677766666666555554444
Q ss_pred hccc---CC-----------ccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeee
Q psy12680 1406 DKRR---KG-----------VYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLM 1471 (2567)
Q Consensus 1406 ekr~---~~-----------~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v 1471 (2567)
.... +. .+. ..++++|+++||+..-....-+++..+..|-.+++.. ..... -.++.++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~---~~~~~----~~~v~lI 183 (412)
T 1w5s_A 112 GYPIQVRGAPALDILKALVDNLY-VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI---PSRDG----VNRIGFL 183 (412)
T ss_dssp TCCCCCTTCCHHHHHHHHHHHHH-HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS---CCTTS----CCBEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc---ccCCC----CceEEEE
Confidence 2110 00 000 1257899999998653211001223333222233221 00000 0235566
Q ss_pred eecCCCCCCCCCC---cchhcccc-ceeccCCCHHHHHHHHHHHHHh
Q psy12680 1472 CAMGPPSTGNTVT---PRFSRHFN-QIVINKFDDDTMVTIFSKILLW 1514 (2567)
Q Consensus 1472 ~am~Ppggg~~is---~Rf~r~f~-vi~i~~p~~~sL~~If~~il~~ 1514 (2567)
++.+.+.-...+. ++..+.|. .+.++.++.+.+..++...+..
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~ 230 (412)
T 1w5s_A 184 LVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAEL 230 (412)
T ss_dssp EEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHh
Confidence 6654332100111 33322222 2788999999999999876643
No 149
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.98 E-value=0.029 Score=70.42 Aligned_cols=135 Identities=11% Similarity=0.128 Sum_probs=72.0
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEec-cC-------CCCcCcccccccCCCCCCCcc-hH
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVIN-PK-------SITMGQLYGQFDAVSHEWSDG-IL 434 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~in-PK-------ait~~eLyG~~d~~T~EW~DG-vl 434 (2567)
..| ++++||+|+||||+.+.|+..+.. ...|...+.-..++ |. .++....+ .++.......++ .+
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~~----~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 109 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESIFG----PGVYRLKIDVRQFVTASNRKLELNVVSSPYHL-EITPSDMGNNDRIVI 109 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHHSC----TTCCC------------------CCEECSSEE-EECCC----CCHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHHcC----CCCCeEEecceeecccccccceeeeecccceE-EecHhhcCCcchHHH
Confidence 457 999999999999999999997521 00110000000000 00 00000000 112111111222 23
Q ss_pred HHHHHHHHhcC-----------CCCceEEEeCCC--CCHHHHHHHHhhhcCCceeEecccceeecCCCCeEEEecCCcCc
Q psy12680 435 AVSYRQFAMSQ-----------NENRKWLIFDGP--VDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEV 501 (2567)
Q Consensus 435 s~i~R~~~~~~-----------~~~~~WivfDGp--VDa~WIEnLNSVLDDNK~LtL~nGErI~l~~~~~llFEv~dL~~ 501 (2567)
-.++.+++... ....+-+++|-+ +|+.-.+.|-..|.+ .++++.+|+=+++...
T Consensus 110 ~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~-------------~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 110 QELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK-------------YSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH-------------STTTEEEEEEESCSCS
T ss_pred HHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh-------------hcCCCEEEEEeCCHHH
Confidence 33444443221 225679999876 466555555555543 2456788888888888
Q ss_pred CCcceeeeceeEEecC
Q psy12680 502 ASPATVSRCGMIYMEP 517 (2567)
Q Consensus 502 ASPATVSRcGmVy~~~ 517 (2567)
.-|+-.|||-.+.|.+
T Consensus 177 l~~~l~sR~~~~~~~~ 192 (354)
T 1sxj_E 177 IIAPIKSQCLLIRCPA 192 (354)
T ss_dssp SCHHHHTTSEEEECCC
T ss_pred HHHHHHhhceEEecCC
Confidence 8899999998887765
No 150
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.96 E-value=0.079 Score=67.08 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=95.8
Q ss_pred chhhHHHHHHHHHHhcCCCcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeeccccccCHHHH
Q psy12680 1318 EETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQT 1397 (2567)
Q Consensus 1318 ~dT~R~~~ll~~ll~~~~pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa~Tts~~~ 1397 (2567)
+...+....+........|+++.|++||||+.+.+.... .+...-..+.+||++-...
T Consensus 136 ~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~-------------------~s~r~~~fv~vnc~~~~~~--- 193 (368)
T 3dzd_A 136 PKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHR-------------------YSGRKGAFVDLNCASIPQE--- 193 (368)
T ss_dssp HHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHH-------------------HHCCCSCEEEEESSSSCTT---
T ss_pred hHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHH-------------------hccccCCcEEEEcccCChH---
Confidence 334445556667778899999999999999987754221 1111112788999987532
Q ss_pred HHHHHhhhhcccCCccCCCCC---------cEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeee
Q psy12680 1398 QDIIMSKLDKRRKGVYGPPLG---------KRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEI 1468 (2567)
Q Consensus 1398 q~~ies~lekr~~~~~gp~~g---------K~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~di 1468 (2567)
.+++.|-...++.|..... ..-++|+|+|.-=.+ ....-|-++++.|.+....... ..-.|+
T Consensus 194 --~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~------~~Q~~Ll~~l~~~~~~~~g~~~-~~~~~~ 264 (368)
T 3dzd_A 194 --LAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ------RVQAKLLRVLETGSFTRLGGNQ-KIEVDI 264 (368)
T ss_dssp --THHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCH------HHHHHHHHHHHHSEECCBTCCC-BEECCC
T ss_pred --HHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCH------HHHHHHHHHHHhCCcccCCCCc-ceeeee
Confidence 4566665554544433221 113689988763211 2345556677777666432221 223588
Q ss_pred eeeeecCCCCC----CCCCCcchhccccceeccCC--CH--HHHHHHHHHHHH
Q psy12680 1469 QLMCAMGPPST----GNTVTPRFSRHFNQIVINKF--DD--DTMVTIFSKILL 1513 (2567)
Q Consensus 1469 q~v~am~Ppgg----g~~is~Rf~r~f~vi~i~~p--~~--~sL~~If~~il~ 1513 (2567)
.+++|.+.+-. .+...+.|...++++.+.-| .+ +.+..+...++.
T Consensus 265 rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 265 RVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp EEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 89999885421 12345567677777664444 33 445555555443
No 151
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.96 E-value=0.013 Score=72.37 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=21.9
Q ss_pred HHHHHHhc-----CCCcccccCCCCcccceeeh
Q psy12680 1326 LMKLLVTH-----QKPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1326 ll~~ll~~-----~~pvll~GptGTGKT~~i~~ 1353 (2567)
.+..++.. +.+++|+||+|||||.++.+
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 34455554 68999999999999988754
No 152
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.93 E-value=0.03 Score=70.04 Aligned_cols=85 Identities=12% Similarity=0.208 Sum_probs=52.2
Q ss_pred EEEEEEcCCCCccccccCCCChHHHHHHHhhccccc-----ccCc-ceeeeeeeeeeeeecCCCCCCCCCCcchhcccc-
Q psy12680 1420 RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWY-----DRKD-VVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFN- 1492 (2567)
Q Consensus 1420 ~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~y-----dr~~-~~~~~i~diq~v~am~Ppggg~~is~Rf~r~f~- 1492 (2567)
..|+|+||++.-.. ...+.|...++.++.. +... ..-..+..+.++++.++++ .+++.+.+.|.
T Consensus 103 ~~v~~iDE~~~l~~------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~---~Ls~~l~sR~~l 173 (334)
T 1in4_A 103 GDVLFIDEIHRLNK------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG---LLSSPLRSRFGI 173 (334)
T ss_dssp TCEEEEETGGGCCH------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG---GSCHHHHTTCSE
T ss_pred CCEEEEcchhhcCH------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc---cCCHHHHHhcCc
Confidence 45899999875432 3466776666654321 0000 0001223467777777663 57777777775
Q ss_pred ceeccCCCHHHHHHHHHHHHH
Q psy12680 1493 QIVINKFDDDTMVTIFSKILL 1513 (2567)
Q Consensus 1493 vi~i~~p~~~sL~~If~~il~ 1513 (2567)
.+.+++++.+.+..|...+..
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999887654
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.89 E-value=0.034 Score=61.12 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=44.9
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchh
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEV 68 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~v 68 (2567)
..||.|+|||.+++.++..+ |+.++.+++.+-.+.. +...-.-.|+||+..++...
T Consensus 41 l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD--------AAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG--------GGGGCSEEEEESTTCCCSHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHH--------HHhCCCEEEEeCccccChHH
Confidence 46999999999999999998 8888999998876551 12234567999999988765
No 154
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.88 E-value=0.026 Score=73.93 Aligned_cols=40 Identities=30% Similarity=0.412 Sum_probs=28.1
Q ss_pred eeeeeecCCCCCCCCCCcchhc--cc-cceeccCCCHHHHHHHHHH
Q psy12680 1468 IQLMCAMGPPSTGNTVTPRFSR--HF-NQIVINKFDDDTMVTIFSK 1510 (2567)
Q Consensus 1468 iq~v~am~Ppggg~~is~Rf~r--~f-~vi~i~~p~~~sL~~If~~ 1510 (2567)
+-++++.|.|.. +++.++| .| ..+.++.|+.+....|+..
T Consensus 170 viviAatn~p~~---LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 170 IVVMAATNRPDI---LDPALLRPGRFDRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp CEEEECCSCGGG---SCTTTSSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred EEEEEecCChhh---cCcccccccccceEEecCCCCHHHHHHHHHH
Confidence 556788887743 6666665 23 3678899999988887754
No 155
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.73 E-value=0.023 Score=68.44 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=48.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcC
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQ 445 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~ 445 (2567)
.-|+|+|+|||||||+.+.|++.+... | .++ .+++...+ ...++| |++....|-.++....++...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~------g-~~~--i~~~~D~~-~~~l~~-~~~~~e~~~~~~~~~~i~~~l--- 70 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKN------N-IDV--IVLGSDLI-RESFPV-WKEKYEEFIKKSTYRLIDSAL--- 70 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT------T-CCE--EEECTHHH-HTTSSS-CCGGGHHHHHHHHHHHHHHHH---
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhC------C-CEE--EEECchHH-HHHHhh-hhHHHHHHHHHHHHHHHHHHh---
Confidence 358999999999999999999987421 1 121 22333221 123444 333221121222222222222
Q ss_pred CCCceEEEeCCC-CCHHHHHHHHhhh
Q psy12680 446 NENRKWLIFDGP-VDAIWIENMNSVL 470 (2567)
Q Consensus 446 ~~~~~WivfDGp-VDa~WIEnLNSVL 470 (2567)
.. .++|+||. ....|.+.+....
T Consensus 71 -~~-~~vIiD~~~~~~~~~~~l~~~a 94 (260)
T 3a4m_A 71 -KN-YWVIVDDTNYYNSMRRDLINIA 94 (260)
T ss_dssp -TT-SEEEECSCCCSHHHHHHHHHHH
T ss_pred -hC-CEEEEeCCcccHHHHHHHHHHH
Confidence 22 78899974 4667777776654
No 156
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.68 E-value=0.02 Score=65.21 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=24.2
Q ss_pred HHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 361 MMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 361 ~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
++.-..-|+|+|++||||||+.+.|++.+
T Consensus 5 ~m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 5 KLKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HHTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444569999999999999999999876
No 157
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.62 E-value=0.0097 Score=66.87 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+|+|+|||||||+.+.|++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999987
No 158
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.50 E-value=0.02 Score=75.06 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=68.7
Q ss_pred CCCCCCCCchhHHHHHHHHh----------cCeEEEEeCCCCcc---HHHHHHhhhhhhhcCc-cccccccccCCchhHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAV----------AKLCIVFNCSDSMD---YIGLGKFFKGLIATGA-WACFDEFNRIDVEVLS 70 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l----------G~~~~vfNCs~~~d---~~~m~rif~Gl~q~Ga-W~CFDEfNri~~~vLS 70 (2567)
..||+|||||..++.||+.+ |..++.+||+.... -..+.++|.-+..+|- =..+| ...+
T Consensus 206 L~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-------~~~~ 278 (468)
T 3pxg_A 206 LIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-------AAID 278 (468)
T ss_dssp EESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEEC-------C---
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-------Cchh
Confidence 36999999999999999998 88999999981110 0234455554444432 23344 0000
Q ss_pred HHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCC-CCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 71 VVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNP-GYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 71 vvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNP-gYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
.++.+..-.. .| .+-|..+.|+ .|.+..++++-|..-|.+|.+-.|+..-+.+|+-
T Consensus 279 --------a~~~L~~~L~----~g-------~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~ 335 (468)
T 3pxg_A 279 --------ASNILKPSLA----RG-------ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQ 335 (468)
T ss_dssp -------------CCCTT----SS-------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHH
T ss_pred --------HHHHHHHhhc----CC-------CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHH
Confidence 1111111000 11 3445666665 4665567899999999999999999998888853
No 159
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.46 E-value=0.12 Score=62.47 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=51.3
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHh
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAM 443 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~ 443 (2567)
..++|+|+||||+|||++.+.+++.+. .+ ...+|. ..+++|... .-..+-+..+++.+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~----------~~--~~~i~~----~~~~~g~~~----~~~~~~~~~~~~~~~- 121 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN----------FP--FIKICS----PDKMIGFSE----TAKCQAMKKIFDDAY- 121 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT----------CS--EEEEEC----GGGCTTCCH----HHHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC----------CC--EEEEeC----HHHhcCCch----HHHHHHHHHHHHHHH-
Confidence 568999999999999999999988741 22 223332 135566421 011122333443332
Q ss_pred cCCCCceEEEeCCC------------CCHHHHHHHHhhhcC
Q psy12680 444 SQNENRKWLIFDGP------------VDAIWIENMNSVLDD 472 (2567)
Q Consensus 444 ~~~~~~~WivfDGp------------VDa~WIEnLNSVLDD 472 (2567)
.....-|++|-- ....+.+.|...++.
T Consensus 122 --~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~ 160 (272)
T 1d2n_A 122 --KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK 160 (272)
T ss_dssp --TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC
T ss_pred --hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC
Confidence 133578888851 355677888887764
No 160
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.46 E-value=0.089 Score=65.67 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=76.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCe------------------------EEEEeCC---CCccHHHHHHhhhhhhhc---C--
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKL------------------------CIVFNCS---DSMDYIGLGKFFKGLIAT---G-- 53 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~------------------------~~vfNCs---~~~d~~~m~rif~Gl~q~---G-- 53 (2567)
.||.|||||++++.+|+.+... ++.++.. .......+..++.-+... |
T Consensus 30 ~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~ 109 (334)
T 1a5t_A 30 QALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGA 109 (334)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSC
T ss_pred ECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhccccCCc
Confidence 6999999999999999998742 3555553 345555555555544432 3
Q ss_pred ccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhcccccccc
Q psy12680 54 AWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMM 133 (2567)
Q Consensus 54 aW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~ 133 (2567)
--..+||+.++..+...++- ..+ ...... .+-|++|=+| ..||+.+++-++.|.+-
T Consensus 110 kvviIdead~l~~~a~naLL---k~l----Eep~~~------------~~~Il~t~~~-----~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 110 KVVWVTDAALLTDAAANALL---KTL----EEPPAE------------TWFFLATREP-----ERLLATLRSRCRLHYLA 165 (334)
T ss_dssp EEEEESCGGGBCHHHHHHHH---HHH----TSCCTT------------EEEEEEESCG-----GGSCHHHHTTSEEEECC
T ss_pred EEEEECchhhcCHHHHHHHH---HHh----cCCCCC------------eEEEEEeCCh-----HhCcHHHhhcceeeeCC
Confidence 34568999999876543322 221 111111 1224555443 47999999999999999
Q ss_pred CCCHHHHHHHHH
Q psy12680 134 VPDYALISEIIV 145 (2567)
Q Consensus 134 ~PD~~lIaEi~L 145 (2567)
.|+...+.+++-
T Consensus 166 ~~~~~~~~~~L~ 177 (334)
T 1a5t_A 166 PPPEQYAVTWLS 177 (334)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999988877753
No 161
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.44 E-value=0.012 Score=65.55 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=47.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEec--------cCCCCcCcccccccCCCCCCCcchHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVIN--------PKSITMGQLYGQFDAVSHEWSDGILAVSY 438 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~in--------PKait~~eLyG~~d~~T~EW~DGvls~i~ 438 (2567)
-|+|+|||||||||+.+.| +.+. .+ ...+. ....+..++....+......-+.++..+.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g----------~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG----------AK--VIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLC 69 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT----------CE--EEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC----------Cc--EEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHH
Confidence 5889999999999999999 4431 11 11100 00000000000000000001133444444
Q ss_pred HHHHhcCCCCceEEEeCCCCCHHHHHHHHhhhc
Q psy12680 439 RQFAMSQNENRKWLIFDGPVDAIWIENMNSVLD 471 (2567)
Q Consensus 439 R~~~~~~~~~~~WivfDGpVDa~WIEnLNSVLD 471 (2567)
.+.... ...+.+|+||..++.+++.|+...+
T Consensus 70 ~~~l~~--~~~~~vi~dg~~~~~~~~~l~~~~~ 100 (179)
T 3lw7_A 70 VEELGT--SNHDLVVFDGVRSLAEVEEFKRLLG 100 (179)
T ss_dssp HHHHCS--CCCSCEEEECCCCHHHHHHHHHHHC
T ss_pred HHHHHh--cCCCeEEEeCCCCHHHHHHHHHHhC
Confidence 444422 3456789999999999999998875
No 162
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.37 E-value=0.032 Score=65.16 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|||||||+|.-+.|++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999876
No 163
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.26 E-value=0.011 Score=68.13 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=21.6
Q ss_pred HHHHHHhcC------CCcccccCCCCcccceeeh
Q psy12680 1326 LMKLLVTHQ------KPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1326 ll~~ll~~~------~pvll~GptGTGKT~~i~~ 1353 (2567)
.+..++... .+++++||+|||||.+++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 40 FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHH
Confidence 444555544 7899999999999988764
No 164
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.13 E-value=0.053 Score=67.75 Aligned_cols=128 Identities=19% Similarity=0.230 Sum_probs=78.7
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHHHHHHHhhhhhhh
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVT 84 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~ 84 (2567)
..||+|||||.+++.+|..+|..+...+++...+...+..++..+ ..+.-+++||++++...+..++-. ++.
T Consensus 56 l~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~-------~~~ 127 (334)
T 1in4_A 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL-ERGDVLFIDEIHRLNKAVEELLYS-------AIE 127 (334)
T ss_dssp EESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHC-CTTCEEEEETGGGCCHHHHHHHHH-------HHH
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHc-cCCCEEEEcchhhcCHHHHHHHHH-------HHH
Confidence 469999999999999999999999888887766666666555443 245678999999998744333322 221
Q ss_pred cCCceEEE-cC---eEEEe-eCceeE-EEEeCCCCCCCCCchhhHhhccc-cccccCCCHHHHHHHHH
Q psy12680 85 LGEEEILF-EG---TILKL-DRTCSV-FITMNPGYAGRSELPDNLKSLFR-TVAMMVPDYALISEIIV 145 (2567)
Q Consensus 85 ~~~~~~~f-~g---~~i~l-~~~~~i-FiTmNPgYaGRseLPdnLk~lFR-pvam~~PD~~lIaEi~L 145 (2567)
.....+.+ .| +.+.. -+.+++ .+|-+| ..|+.-+++-|- .+.+-.|+...+.+++.
T Consensus 128 ~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~-----~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~ 190 (334)
T 1in4_A 128 DFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS-----GLLSSPLRSRFGIILELDFYTVKELKEIIK 190 (334)
T ss_dssp TSCCCC---------------CCCEEEEEESCG-----GGSCHHHHTTCSEEEECCCCCHHHHHHHHH
T ss_pred hcccceeeccCcccccccccCCCeEEEEecCCc-----ccCCHHHHHhcCceeeCCCCCHHHHHHHHH
Confidence 11111110 01 11111 112222 234443 268888998774 45677888888888764
No 165
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.12 E-value=0.12 Score=64.61 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=71.5
Q ss_pred CCCCCCCchhHHHHHHHHh-c----------------------------CeEEEEeCCCCccHH--HHHHhhhhh-----
Q psy12680 6 EGPAGTGKTETTKDLAKAV-A----------------------------KLCIVFNCSDSMDYI--GLGKFFKGL----- 49 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l-G----------------------------~~~~vfNCs~~~d~~--~m~rif~Gl----- 49 (2567)
.||.|||||.+++.|++.+ + .+.+.+++++.-... .+...+.-+
T Consensus 42 ~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 121 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121 (354)
T ss_dssp ECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC
T ss_pred ECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhcc
Confidence 6999999999999999964 2 124556766532111 233333222
Q ss_pred ----------hhcCccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCcee-EEEEeCCCCCCCCC
Q psy12680 50 ----------IATGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCS-VFITMNPGYAGRSE 118 (2567)
Q Consensus 50 ----------~q~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~-iFiTmNPgYaGRse 118 (2567)
+...--..+||+..++.+....+-..+... . +++. |++|=+| ..
T Consensus 122 ~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~-------~-------------~~~~~Il~t~~~-----~~ 176 (354)
T 1sxj_E 122 VDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY-------S-------------KNIRLIMVCDSM-----SP 176 (354)
T ss_dssp ------------CCEEEEEECTTSSCHHHHHHHHHHHHHS-------T-------------TTEEEEEEESCS-----CS
T ss_pred ccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh-------c-------------CCCEEEEEeCCH-----HH
Confidence 233447789999999877655544443321 0 1222 3444443 25
Q ss_pred chhhHhhccccccccCCCHHHHHHHHH
Q psy12680 119 LPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 119 LPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
+++.|++-++.+.+-.|+..-+.+++-
T Consensus 177 l~~~l~sR~~~~~~~~~~~~~~~~~l~ 203 (354)
T 1sxj_E 177 IIAPIKSQCLLIRCPAPSDSEISTILS 203 (354)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHhhceEEecCCcCHHHHHHHHH
Confidence 888899989999999999988887754
No 166
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.05 E-value=0.028 Score=64.85 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|+|.|++||||||+.+.|++.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999874
No 167
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.86 E-value=0.022 Score=74.45 Aligned_cols=62 Identities=21% Similarity=0.167 Sum_probs=42.8
Q ss_pred CCCCCCCCchhHHHHHHHHhc--CeEEEEeCCCCccH-----HHHHHhhhhh----hhcCccccccccccCCc
Q psy12680 5 PEGPAGTGKTETTKDLAKAVA--KLCIVFNCSDSMDY-----IGLGKFFKGL----IATGAWACFDEFNRIDV 66 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG--~~~~vfNCs~~~d~-----~~m~rif~Gl----~q~GaW~CFDEfNri~~ 66 (2567)
.+||+|||||.+++.+|+.+| .+++.++|++-.+- ..+.+.|.-. ...++-..+||+..|-.
T Consensus 68 l~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 68 LAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp EECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred EECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 379999999999999999999 99999999876532 1133333322 23345566666665543
No 168
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.85 E-value=0.27 Score=61.78 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=52.5
Q ss_pred HHhceE-EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccccCC-CCCCCcchHHHHHH
Q psy12680 362 MIVRWG-FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAV-SHEWSDGILAVSYR 439 (2567)
Q Consensus 362 ~~~rhG-vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~d~~-T~EW~DGvls~i~R 439 (2567)
.....| |.|+||+||||||.+++|...+..- .+ ...+..=+|-......--+.+... ...... -+...++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-----~~--~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~-~~~~~La 190 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-----KY--HHILTIEDPIEFVHESKKCLVNQREVHRDTL-GFSEALR 190 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-----CC--CEEEEEESSCCSCCCCSSSEEEEEEBTTTBS-CHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-----CC--cEEEEccCcHHhhhhccccceeeeeeccccC-CHHHHHH
Confidence 344455 7899999999999999998876421 01 112223344333222211111100 000111 1333444
Q ss_pred HHHhcCCCCceEEEeCCCCCHHHHHHHHhhh
Q psy12680 440 QFAMSQNENRKWLIFDGPVDAIWIENMNSVL 470 (2567)
Q Consensus 440 ~~~~~~~~~~~WivfDGpVDa~WIEnLNSVL 470 (2567)
.+.. .+..+|++|=|-|+.-++.+-...
T Consensus 191 ~aL~---~~PdvillDEp~d~e~~~~~~~~~ 218 (356)
T 3jvv_A 191 SALR---EDPDIILVGEMRDLETIRLALTAA 218 (356)
T ss_dssp HHTT---SCCSEEEESCCCSHHHHHHHHHHH
T ss_pred HHhh---hCcCEEecCCCCCHHHHHHHHHHH
Confidence 4332 355799999999987777655543
No 169
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.70 E-value=0.14 Score=60.32 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=21.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
=|.+.||+||||||..+.|++.+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478899999999999999999873
No 170
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.65 E-value=0.055 Score=73.15 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=48.1
Q ss_pred ceEEEeC--CCCCHHHHHHHHhhhcCCceeEecccc--------eeecCCCCeEEEecCC--cCcCCcceeeece----e
Q psy12680 449 RKWLIFD--GPVDAIWIENMNSVLDDNKKLCLMSGE--------IIALAPTTSLIFEPQD--LEVASPATVSRCG----M 512 (2567)
Q Consensus 449 ~~WivfD--GpVDa~WIEnLNSVLDDNK~LtL~nGE--------rI~l~~~~~llFEv~d--L~~ASPATVSRcG----m 512 (2567)
..++++| +-.++.--+.|..+|++.+.--...++ .-++|.++++|+=+.- +....|+..+||- .
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~ 281 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYE 281 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEE
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhccceE
Confidence 4599998 456777778899999877654443322 3456778899986653 2578999999995 3
Q ss_pred EEecC
Q psy12680 513 IYMEP 517 (2567)
Q Consensus 513 Vy~~~ 517 (2567)
|++++
T Consensus 282 i~l~~ 286 (604)
T 3k1j_A 282 VYMRT 286 (604)
T ss_dssp EECCS
T ss_pred eeccc
Confidence 55543
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.36 E-value=0.025 Score=65.03 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=41.1
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccH-------HHHHHhhhhhhhcCccccccccccC
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDY-------IGLGKFFKGLIATGAWACFDEFNRI 64 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~-------~~m~rif~Gl~q~GaW~CFDEfNri 64 (2567)
..||+|||||..++.+++.+ |..++.++|++-++. ..+.+++..+... .-.++||+...
T Consensus 59 l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lilDei~~~ 127 (202)
T 2w58_A 59 LHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKV-PVLMLDDLGAE 127 (202)
T ss_dssp EECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHS-SEEEEEEECCC
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCC-CEEEEcCCCCC
Confidence 36999999999999999998 778999999753221 0112333334433 36899999553
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.12 Score=63.66 Aligned_cols=141 Identities=10% Similarity=0.068 Sum_probs=82.3
Q ss_pred HHHHHhcCC--CcccccCCCCcccceeehhhhhhccccccccchhhhhhhhhccccccceeecccc-ccCHHHHHHHHHh
Q psy12680 1327 MKLLVTHQK--PVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSA-QTSANQTQDIIMS 1403 (2567)
Q Consensus 1327 l~~ll~~~~--pvll~GptGTGKT~~i~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~lnfSa-~Tts~~~q~~ies 1403 (2567)
+...+..++ ..+|+||+|+|||++++.....+. ...........++-+. .++-..+.++++.
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~---------------~~~~~~~d~~~l~~~~~~~~id~ir~li~~ 73 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVSLELPEYVE---------------KFPPKASDVLEIDPEGENIGIDDIRTIKDF 73 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH---------------TSCCCTTTEEEECCSSSCBCHHHHHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCc---------------hhhccCCCEEEEcCCcCCCCHHHHHHHHHH
Confidence 444555554 478999999999987754211000 0001122345566554 5666677776543
Q ss_pred hhhcccCCccCCCCCcEEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeeeeeeeeeeecCCCCCCCCC
Q psy12680 1404 KLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTV 1483 (2567)
Q Consensus 1404 ~lekr~~~~~gp~~gK~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i~diq~v~am~Ppggg~~i 1483 (2567)
+. +.|..|++-||++|+..+=..+ .... |+..+|.-- .++.|+.+++-| ..+
T Consensus 74 -~~------~~p~~~~~kvviIdead~lt~~-----a~na-LLk~LEep~------------~~t~fIl~t~~~---~kl 125 (305)
T 2gno_A 74 -LN------YSPELYTRKYVIVHDCERMTQQ-----AANA-FLKALEEPP------------EYAVIVLNTRRW---HYL 125 (305)
T ss_dssp -HT------SCCSSSSSEEEEETTGGGBCHH-----HHHH-THHHHHSCC------------TTEEEEEEESCG---GGS
T ss_pred -Hh------hccccCCceEEEeccHHHhCHH-----HHHH-HHHHHhCCC------------CCeEEEEEECCh---HhC
Confidence 22 2355567778889997654332 2333 445555311 134566665544 246
Q ss_pred CcchhccccceeccCCCHHHHHHHHHHHH
Q psy12680 1484 TPRFSRHFNQIVINKFDDDTMVTIFSKIL 1512 (2567)
Q Consensus 1484 s~Rf~r~f~vi~i~~p~~~sL~~If~~il 1512 (2567)
.|-+.+. ++.+..|+.+.+......++
T Consensus 126 ~~tI~SR--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT--SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce--eEeCCCCCHHHHHHHHHHHh
Confidence 6666666 88899999998888776554
No 173
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.17 E-value=0.029 Score=78.25 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=50.8
Q ss_pred CCCCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc------HHHHHHhhhhhhhc-CccccccccccCC
Q psy12680 3 GAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD------YIGLGKFFKGLIAT-GAWACFDEFNRID 65 (2567)
Q Consensus 3 Gap~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d------~~~m~rif~Gl~q~-GaW~CFDEfNri~ 65 (2567)
-...||+|||||.++|.+|..+|..++.++|++-.+ .+.+..+|.-.-+. -+-..|||++.|.
T Consensus 514 vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~ 583 (806)
T 1ypw_A 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 583 (806)
T ss_dssp CCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHC
T ss_pred eEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhh
Confidence 356899999999999999999999999999998543 35567777665433 3678899999874
No 174
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.09 E-value=0.046 Score=64.15 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|.|++||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 175
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.90 E-value=0.037 Score=74.85 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=42.0
Q ss_pred cCccccccccccCCchhHHHHHHHHHhhhhhhhcCCceEEEcCe----------EEEeeCceeEEEEeCCCCCCCCCchh
Q psy12680 52 TGAWACFDEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGT----------ILKLDRTCSVFITMNPGYAGRSELPD 121 (2567)
Q Consensus 52 ~GaW~CFDEfNri~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~----------~i~l~~~~~iFiTmNPgYaGRseLPd 121 (2567)
.|.+.++||+++++.++...+-+-+. .+ .+...|. .-++..++-+..|.||.. ..++++
T Consensus 201 ~~gvL~LDEi~~l~~~~q~~Ll~~Le-------~~--~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~--~~~l~~ 269 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLKMQQSLLTAMQ-------EK--KFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT--VDKMHP 269 (604)
T ss_dssp TTSEEEETTGGGSCHHHHHHHHHHHH-------HS--EECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH--HHHSCH
T ss_pred CCCEEEEechhhCCHHHHHHHHHHHH-------cC--cEEecccccccccccCCCCccceeEEEEEecCHHH--HhhcCH
Confidence 35689999999999876655444332 21 2322332 233445678999999851 125788
Q ss_pred hHhhcccc
Q psy12680 122 NLKSLFRT 129 (2567)
Q Consensus 122 nLk~lFRp 129 (2567)
.|...|+-
T Consensus 270 ~l~~R~~v 277 (604)
T 3k1j_A 270 ALRSRIRG 277 (604)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 88887763
No 176
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.76 E-value=0.37 Score=55.41 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
|.+=|+-||||||..+.|++.|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999985
No 177
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.75 E-value=0.33 Score=56.20 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.8
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|.+-|+.||||||..+.|++.|
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 5566999999999999999987
No 178
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.68 E-value=0.1 Score=59.32 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
|.|.|++||||||+.+.|++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 179
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.92 E-value=0.27 Score=60.46 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=77.2
Q ss_pred CCCCCCCchhHHHHHHHHhc------CeEEEEeCCC-CccHHHHHHhhhhhhhc---Ccc--ccccccccCCchhHHHHH
Q psy12680 6 EGPAGTGKTETTKDLAKAVA------KLCIVFNCSD-SMDYIGLGKFFKGLIAT---GAW--ACFDEFNRIDVEVLSVVA 73 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG------~~~~vfNCs~-~~d~~~m~rif~Gl~q~---GaW--~CFDEfNri~~~vLSvva 73 (2567)
+||.|||||++++.||+..| ..++.+|.++ ......+..++.-+... |-| ..+||+.++..+..-++-
T Consensus 24 ~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLL 103 (305)
T 2gno_A 24 NGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFL 103 (305)
T ss_dssp ECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHH
Confidence 79999999999999999753 4678899875 56666666766655443 323 457999999876522221
Q ss_pred HHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCCCCCCchhhHhhccccccccCCCHHHHHHHHH
Q psy12680 74 QQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIV 145 (2567)
Q Consensus 74 qqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYaGRseLPdnLk~lFRpvam~~PD~~lIaEi~L 145 (2567)
..+...... ++-||+|=|| ..|++.+++= .+.+-.|+-.-|.+.+-
T Consensus 104 -------k~LEep~~~------------t~fIl~t~~~-----~kl~~tI~SR--~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 104 -------KALEEPPEY------------AVIVLNTRRW-----HYLLPTIKSR--VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp -------HHHHSCCTT------------EEEEEEESCG-----GGSCHHHHTT--SEEEECCCCHHHHHHHH
T ss_pred -------HHHhCCCCC------------eEEEEEECCh-----HhChHHHHce--eEeCCCCCHHHHHHHHH
Confidence 122222122 2335666454 5789999985 88888899888877754
No 180
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.89 E-value=0.14 Score=60.69 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=54.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCcc-EEEEEeccCCCCcCccc-ccc--cCCCCCCC---cchHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHK-VEIIVINPKSITMGQLY-GQF--DAVSHEWS---DGILAVSYR 439 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~-v~~~~inPKait~~eLy-G~~--d~~T~EW~---DGvls~i~R 439 (2567)
=|++.|++||||||..+.|++.+.. . +.+ +.. .=.|..-..++.+ +.+ ++...+|. .-++=..-|
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~------~-~~~~~~~-~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R 100 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQ------N-GIDHITR-TREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAAR 100 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHH------T-TCCCEEE-EESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh------c-CCCeeee-ecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHH
Confidence 4788999999999999999998853 1 233 332 3366533333332 222 22223343 232211122
Q ss_pred HH-----HhcCCCCceEEEeC-------------CCCCHHHHHHHHhhh
Q psy12680 440 QF-----AMSQNENRKWLIFD-------------GPVDAIWIENMNSVL 470 (2567)
Q Consensus 440 ~~-----~~~~~~~~~WivfD-------------GpVDa~WIEnLNSVL 470 (2567)
.. ....-...+|+|+| ..+|..|++.+|...
T Consensus 101 ~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~ 149 (236)
T 3lv8_A 101 VQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTA 149 (236)
T ss_dssp HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHH
Confidence 11 11111235799999 258899999998753
No 181
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.88 E-value=0.08 Score=64.85 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
.-|+|+|+|||||||+.+.|++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999874
No 182
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.88 E-value=0.092 Score=64.80 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=39.2
Q ss_pred CCCCCCCCchhHHHHHHHHhc----CeEEEEeCCCCcc-------HHHHHHhhhhhhhcCccccccccccC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVA----KLCIVFNCSDSMD-------YIGLGKFFKGLIATGAWACFDEFNRI 64 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG----~~~~vfNCs~~~d-------~~~m~rif~Gl~q~GaW~CFDEfNri 64 (2567)
..||+|||||.+++.+|+.+. ..|+.++|++-++ ...+.+++..+..+ --.++||+...
T Consensus 157 l~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~lLiiDdig~~ 226 (308)
T 2qgz_A 157 LYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNV-PVLILDDIGAE 226 (308)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTS-SEEEEETCCC-
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCC-CEEEEcCCCCC
Confidence 369999999999999998776 7888889874322 11223344444433 36799999443
No 183
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.79 E-value=0.27 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQL 391 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~ 391 (2567)
=|++.||+||||||..+.|++.+..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3778899999999999999999853
No 184
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.70 E-value=0.13 Score=64.04 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=28.2
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSD 35 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~ 35 (2567)
..||+|+|||..++.+++.++..+++++|..
T Consensus 35 i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 35 VLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp EEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 3699999999999999999988899999974
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.69 E-value=0.074 Score=60.10 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-++|+|||||||||+.+.|...+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998754
No 186
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.52 E-value=0.1 Score=66.72 Aligned_cols=33 Identities=27% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCCCCCCchhHHHHHHHHh---------cCeEEEEeCCCCcc
Q psy12680 6 EGPAGTGKTETTKDLAKAV---------AKLCIVFNCSDSMD 38 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---------G~~~~vfNCs~~~d 38 (2567)
.||+|||||.+++.+++.+ +..++-+||.+..+
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 8999999999999999887 56788899965433
No 187
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.31 E-value=0.12 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
..++.|+||+||||||+.+.++..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988874
No 188
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.25 E-value=0.19 Score=59.25 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|++||||||+.+.|++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999986
No 189
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.19 E-value=1.4 Score=42.96 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=33.1
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2336 KIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAE 2405 (2567)
Q Consensus 2336 ~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~ 2405 (2567)
+++.-++.....+...+..++..|...+......++.+..|+..+.....+.+..+..+..++.+|+.|+
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444444444443
No 190
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.19 E-value=0.25 Score=59.12 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|||||||||+-+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999998876
No 191
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.17 E-value=0.19 Score=60.52 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-+.|+||+||||||++++|...+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 478999999999999999998764
No 192
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.14 E-value=0.2 Score=58.32 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=52.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccc--cCCCCCCCc---chHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQF--DAVSHEWSD---GILAVSYRQF 441 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~--d~~T~EW~D---Gvls~i~R~~ 441 (2567)
=|.+.|++||||||..+.|++.+.. . +.+|. ..=.|..-..+++.-.+ ++...+|.+ -+|=..-|-.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~------~-~~~v~-~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~ 79 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRE------R-GIEVQ-LTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQ 79 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT------T-TCCEE-EEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH------c-CCCcc-cccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999998852 2 23443 23356432222222221 222234543 2222222211
Q ss_pred -----HhcCCCCceEEEeC----------C---CCCHHHHHHHHhh
Q psy12680 442 -----AMSQNENRKWLIFD----------G---PVDAIWIENMNSV 469 (2567)
Q Consensus 442 -----~~~~~~~~~WivfD----------G---pVDa~WIEnLNSV 469 (2567)
....-...+|+|+| | .+|..|++.+|..
T Consensus 80 ~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~ 125 (213)
T 4edh_A 80 HLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESF 125 (213)
T ss_dssp HHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHH
Confidence 11111234799999 2 4788999999874
No 193
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.05 E-value=0.11 Score=57.80 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+||+||||||+.+.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 194
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.99 E-value=0.092 Score=58.53 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|+||+||||||+.+.|+..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999998875
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.84 E-value=0.1 Score=60.07 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-+.|+||+||||||+++.|..-+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999998754
No 196
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.63 E-value=0.099 Score=58.55 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|+|||||||+-+.|++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999876
No 197
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.59 E-value=3 Score=42.62 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=75.7
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy12680 2338 VGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKER 2417 (2567)
Q Consensus 2338 V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~R 2417 (2567)
|+-+++.++-++.++++.+.+|...-.+|.+-+.++.+|++.-...++|...|..++...++.++.|..++..=+.++..
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQ 92 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQ 92 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhH
Confidence 55677788888888888888999888999999999999999999999999999999999999999999999876666655
Q ss_pred HHHHHHHHHH
Q psy12680 2418 WSSTAKMLNE 2427 (2567)
Q Consensus 2418 W~~~~~~l~~ 2427 (2567)
-+-.+..+.+
T Consensus 93 QSlDiRKLrE 102 (167)
T 4gkw_A 93 QSLDMRKLGE 102 (167)
T ss_dssp HHHHHHHTHH
T ss_pred hhhhHHHHHH
Confidence 5544444433
No 198
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.53 E-value=0.12 Score=59.30 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|.|+||+||||||+.+.|+..+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999884
No 199
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.42 E-value=0.18 Score=58.80 Aligned_cols=97 Identities=22% Similarity=0.319 Sum_probs=55.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCcccccc--cCC---CCCC---CcchHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQF--DAV---SHEW---SDGILAVSY 438 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~~--d~~---T~EW---~DGvls~i~ 438 (2567)
=|.+.|++||||||..+.|.+.|.. .+...| ..+=.|..-..++..-.+ ++. ..++ +..++-..-
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~------~~~~~v-~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~ 77 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQ------LGIRDM-VFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAA 77 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH------TTCCCE-EEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH------cCCCcc-eeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHH
Confidence 3678899999999999999998853 221133 334567543333322111 111 1233 333443333
Q ss_pred HHHH-----hcCCCCceEEEeC----------C---CCCHHHHHHHHhhh
Q psy12680 439 RQFA-----MSQNENRKWLIFD----------G---PVDAIWIENMNSVL 470 (2567)
Q Consensus 439 R~~~-----~~~~~~~~WivfD----------G---pVDa~WIEnLNSVL 470 (2567)
|... ...-...+|+|+| | .+|..|++.+|...
T Consensus 78 R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~ 127 (213)
T 4tmk_A 78 RVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAV 127 (213)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHh
Confidence 4211 1111235799999 3 57899999999853
No 200
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.41 E-value=0.42 Score=60.88 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=65.0
Q ss_pred CCCCCCCchhHHHHHHHHhc---CeEEEEeCCCCccHHHHHHhhhhhh-----------------hcCccccccccccCC
Q psy12680 6 EGPAGTGKTETTKDLAKAVA---KLCIVFNCSDSMDYIGLGKFFKGLI-----------------ATGAWACFDEFNRID 65 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG---~~~~vfNCs~~~d~~~m~rif~Gl~-----------------q~GaW~CFDEfNri~ 65 (2567)
.|+.|||||...+.+....+ .+.+++||+.--+ ..+..-+-|-. ..|....+||+..++
T Consensus 166 ~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~-~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~ 244 (387)
T 1ny5_A 166 TGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-DIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELS 244 (387)
T ss_dssp ECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-HHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCC
T ss_pred ecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH-HHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCC
Confidence 59999999999888888765 6899999997443 33333222311 125577899999999
Q ss_pred chhHHHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCC
Q psy12680 66 VEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPG 112 (2567)
Q Consensus 66 ~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPg 112 (2567)
.++...+.+.++. . .|.-.|..-....++-+..|.|.+
T Consensus 245 ~~~q~~Ll~~l~~---~------~~~~~g~~~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 245 LEAQAKLLRVIES---G------KFYRLGGRKEIEVNVRILAATNRN 282 (387)
T ss_dssp HHHHHHHHHHHHH---S------EECCBTCCSBEECCCEEEEEESSC
T ss_pred HHHHHHHHHHHhc---C------cEEeCCCCceeeccEEEEEeCCCC
Confidence 9888877666543 1 222233333344566788888864
No 201
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.26 E-value=2.7 Score=41.85 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhcc
Q psy12680 2339 GPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKK-QRAEDLIGKLGGEKER 2417 (2567)
Q Consensus 2339 ~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl-~rA~~Li~~L~~Ek~R 2417 (2567)
.|+.+.++.+..++..++.++.....++..+.+.+..=+..-..+..++..++.+++....-| +-|.+++..=.-+...
T Consensus 1 ~~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~ 80 (97)
T 2eqb_B 1 GPLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYA 80 (97)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888888888888888888888888888888888888766554 5688888776666666
Q ss_pred HHHHHHHHHHHhh
Q psy12680 2418 WSSTAKMLNEKYY 2430 (2567)
Q Consensus 2418 W~~~~~~l~~~~~ 2430 (2567)
-+.....|+.++.
T Consensus 81 ~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 81 IEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666553
No 202
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.21 E-value=0.14 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.8
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
+.|+||+||||||++++|+..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999998873
No 203
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.16 E-value=0.15 Score=60.69 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.6
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.+..|+.|+|||||||||+.+.++..+
T Consensus 47 ~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 47 RIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999988754
No 204
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.14 E-value=0.12 Score=59.12 Aligned_cols=23 Identities=48% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+||+||||||+.+.|...+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999998753
No 205
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.14 E-value=0.11 Score=63.10 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.5
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.+..||.|+|||||||||+.++|+..+
T Consensus 42 ~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 42 VTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 456799999999999999999988754
No 206
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.09 E-value=0.14 Score=58.77 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+||+||||||+.+.|++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 207
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.92 E-value=0.15 Score=57.52 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
...|+|+||+||||||+-+.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999886
No 208
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.89 E-value=0.14 Score=58.21 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
+.|+||+||||||+++.|...+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6799999999999999998765
No 209
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=89.82 E-value=65 Score=42.90 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhccHHHHHHHHHHH
Q psy12680 2351 KLQLAMSALHE-KQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQR-AEDLIGKLGGEKERWSSTAKMLNEK 2428 (2567)
Q Consensus 2351 ~l~~a~~~L~~-~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~r-A~~Li~~L~~Ek~RW~~~~~~l~~~ 2428 (2567)
.|++.+.++++ .+++-...++++.+|+++.++-.+ +.++++-...+.||.- +.-|-.|+..|-..=..+++.|+.+
T Consensus 505 ~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~--~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV--QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333332 334444556666666665544222 2223333334455555 7777788988888899999999888
Q ss_pred hhcchhHHH
Q psy12680 2429 YYQLTGDVL 2437 (2567)
Q Consensus 2429 ~~~l~GD~l 2437 (2567)
... -|.|.
T Consensus 583 ~~~-~~~~~ 590 (592)
T 1f5n_A 583 MRR-RKACT 590 (592)
T ss_dssp C--------
T ss_pred hcc-CCCCc
Confidence 554 33343
No 210
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.82 E-value=0.36 Score=59.26 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeC--CCCcc-----HH-HHHHhhhhhhhcCccccccccccCCchhH-------
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNC--SDSMD-----YI-GLGKFFKGLIATGAWACFDEFNRIDVEVL------- 69 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNC--s~~~d-----~~-~m~rif~Gl~q~GaW~CFDEfNri~~~vL------- 69 (2567)
..||+|||||.....+|...|..|+.+.. +|.++ .. .+.+++.=+...+ -..+||+..+....-
T Consensus 128 I~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~ 206 (331)
T 2vhj_A 128 VTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGNTTSGG 206 (331)
T ss_dssp EECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC-----------
T ss_pred EEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccccccccccccccch
Confidence 36999999999999999988877776666 33332 22 2334555556666 889999998854322
Q ss_pred --HHHHHHHHhhhhhhhcCCceEEEcCeEEEeeCceeEEEEeCCCCC
Q psy12680 70 --SVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYA 114 (2567)
Q Consensus 70 --Svvaqqi~~Iq~a~~~~~~~~~f~g~~i~l~~~~~iFiTmNPgYa 114 (2567)
..+.+.+..+....+. .+|.+++|.||.+.
T Consensus 207 v~~~lrqlL~~L~~~~k~---------------~gvtVIlttnp~s~ 238 (331)
T 2vhj_A 207 ISRGAFDLLSDIGAMAAS---------------RGCVVIASLNPTSN 238 (331)
T ss_dssp CCHHHHHHHHHHHHHHHH---------------HTCEEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHHHhh---------------CCCEEEEEeCCccc
Confidence 1234444444443332 24678889998653
No 211
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.80 E-value=0.2 Score=62.20 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=26.2
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDS 36 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~ 36 (2567)
..||+|+|||..++.+++.+| ++.++|.+.
T Consensus 36 i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~ 65 (350)
T 2qen_A 36 LLGIRRVGKSSLLRAFLNERP--GILIDCREL 65 (350)
T ss_dssp EECCTTSSHHHHHHHHHHHSS--EEEEEHHHH
T ss_pred EECCCcCCHHHHHHHHHHHcC--cEEEEeecc
Confidence 469999999999999999987 788898754
No 212
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.79 E-value=0.13 Score=58.24 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
.-+.|+||+||||||+.+.|+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34889999999999999998764
No 213
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.72 E-value=0.16 Score=58.43 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|.|+||+||||||+.+.|+..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48899999999999999998875
No 214
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.71 E-value=0.16 Score=62.33 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.6
Q ss_pred CCcccccCCCCcccceeeh
Q psy12680 1335 KPVMFIGPTGTGKSCYITV 1353 (2567)
Q Consensus 1335 ~pvll~GptGTGKT~~i~~ 1353 (2567)
.-++++||||||||.+...
T Consensus 124 sviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp EEEEEECSCSSSHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH
Confidence 4469999999999987753
No 215
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.64 E-value=3.5 Score=41.70 Aligned_cols=83 Identities=23% Similarity=0.279 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhccHHHH
Q psy12680 2344 ALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVK--KKQRAEDLIGKLGGEKERWSST 2421 (2567)
Q Consensus 2344 ~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~--rl~rA~~Li~~L~~Ek~RW~~~ 2421 (2567)
++..+..+|..|++.|+.++.++.++++.++++++.. ...+-|+.+++.-+. ..+||.+ ..+.+|+.+-..+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadR--Ekl~~eKe~L~~q 98 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAR--EKLVEKKEYLQEQ 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhH--HHHHhHHHHHHHH
Confidence 5677778888888888888888888888877766544 345566666655553 3445555 6788888888888
Q ss_pred HHHHHHHhhcc
Q psy12680 2422 AKMLNEKYYQL 2432 (2567)
Q Consensus 2422 ~~~l~~~~~~l 2432 (2567)
+..++.+...|
T Consensus 99 l~~Lq~q~~~l 109 (110)
T 2v4h_A 99 LEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 88888877654
No 216
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.60 E-value=0.17 Score=58.56 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
..-|.|+||+||||||+.+.|...+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34678999999999999999998874
No 217
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.60 E-value=0.17 Score=57.14 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=22.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-|+|.|++||||||+.+.|++.+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 218
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.42 E-value=0.17 Score=58.10 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|++||||||+.+.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999886
No 219
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.41 E-value=0.16 Score=59.49 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 354 KIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 354 Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+-.-+..+.-..-+.|+||+||||||++++|...+
T Consensus 5 ~~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 5 KIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred ccccccccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 333344444445578999999999999999988754
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.41 E-value=0.16 Score=61.33 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-++|+||+|+||||++++|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999875
No 221
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.34 E-value=0.17 Score=57.23 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|+|||||||+.+.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 222
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.26 E-value=0.16 Score=58.80 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+||+||||||+.+.|...+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48899999999999999998754
No 223
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.25 E-value=0.29 Score=59.25 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.5
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.+..||.|+|||||||||+.+.++..+
T Consensus 71 ~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 71 RIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 456789999999999999999988764
No 224
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.23 E-value=0.19 Score=56.84 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-|+|.|++||||||+.+.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999874
No 225
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.19 E-value=0.18 Score=56.27 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|+||+||||||+.+.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 358899999999999999998765
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.13 E-value=0.15 Score=58.81 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|||||||||+.+.|++.+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998865
No 227
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.89 E-value=3.5 Score=40.18 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12680 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIG 2409 (2567)
Q Consensus 2341 k~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~ 2409 (2567)
.+.++..++.+...+..++..++.++...+.+...+..++...++..+.|+.+++.++.+|..|..-+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888888888888888888888888888888888888776443
No 228
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.88 E-value=0.18 Score=57.86 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|.|+||+||||||+.+.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999997754
No 229
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.86 E-value=0.2 Score=56.07 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|||||||||+-+.|++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 38899999999999999999876
No 230
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.82 E-value=0.18 Score=58.90 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|..-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999874
No 231
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.79 E-value=0.19 Score=58.64 Aligned_cols=24 Identities=38% Similarity=0.270 Sum_probs=21.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|+||+||||||+.+.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998865
No 232
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.78 E-value=0.2 Score=56.43 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|++||||||+.+.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 233
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.76 E-value=0.19 Score=57.05 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~ 387 (2567)
-+.|+||+||||||+.+.|+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999975
No 234
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.58 E-value=0.2 Score=59.41 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|+||+||||||+.+.|++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999876
No 235
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.48 E-value=0.22 Score=55.95 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|+|||||||+.+.|++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999876
No 236
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.47 E-value=0.74 Score=51.80 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=32.9
Q ss_pred CCCCCCCCchhHHHHHHHHhc-----CeEEEEeCCCCccHHHHHHhhhhhh-hcCccccccccccCC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVA-----KLCIVFNCSDSMDYIGLGKFFKGLI-ATGAWACFDEFNRID 65 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG-----~~~~vfNCs~~~d~~~m~rif~Gl~-q~GaW~CFDEfNri~ 65 (2567)
..||.|+|||+..+.|++.+| .+++ .++.++.-++ ..|.+.-.+|+..+.
T Consensus 8 i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i-----------~~~~~~r~~~~~~~~~~~~~~~~~~~ 63 (192)
T 1kht_A 8 VTGVPGVGSTTSSQLAMDNLRKEGVNYKMV-----------SFGSVMFEVAKEENLVSDRDQMRKMD 63 (192)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTTTCCCEEE-----------EHHHHHHHHHHHTTSCSSGGGGSSCC
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCcceEEE-----------ehHHHHHHHHhccCCCCCHHHHhcCC
Confidence 469999999999999999999 4443 2344443332 334444556666554
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.44 E-value=0.2 Score=57.49 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+||+|+||||+.+.|.+.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999988653
No 238
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.43 E-value=6.2 Score=40.14 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=42.8
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12680 2333 KVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIG 2409 (2567)
Q Consensus 2333 ~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~ 2409 (2567)
.|-+++.-++.....+......+++.+...+.....+++.+..|+........+.+.++.++..+..+|+-+.+...
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666655555555555555555555555555555555555555555555555554443
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.43 E-value=0.2 Score=57.89 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+||+||||||++++|..-+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999998764
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.42 E-value=0.2 Score=56.97 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.4
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+||||+||||+.+.|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999887653
No 241
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.39 E-value=0.36 Score=55.46 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=23.1
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-++++++.||||+|||+....|++.+
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998876
No 242
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.35 E-value=0.22 Score=58.42 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+-|+|||||||||.-+.|++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999876
No 243
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.25 E-value=1.2 Score=56.16 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=46.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEe-ccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhc
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVI-NPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMS 444 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~i-nPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~ 444 (2567)
.-|.|+||+||||||+++.|...+..- .. ..+ ..+ .|-......-.|.+....-.=....|+..++.+...
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~----~~--g~I--~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT----KS--YHI--ITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH----SC--CEE--EEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC----CC--cEE--EEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhh
Confidence 347899999999999999999876421 01 111 111 121111111111111000000113345555554432
Q ss_pred CCCCceEEEeCCCCCHHHHHH
Q psy12680 445 QNENRKWLIFDGPVDAIWIEN 465 (2567)
Q Consensus 445 ~~~~~~WivfDGpVDa~WIEn 465 (2567)
+...|++|=|-|+.-++.
T Consensus 209 ---~pd~illdE~~d~e~~~~ 226 (372)
T 2ewv_A 209 ---DPDVIFVGEMRDLETVET 226 (372)
T ss_dssp ---CCSEEEESCCCSHHHHHH
T ss_pred ---CcCEEEECCCCCHHHHHH
Confidence 456999999999876544
No 244
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.20 E-value=0.23 Score=57.33 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|.|+||+||||||+.+.|+..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 245
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.96 E-value=0.37 Score=55.84 Aligned_cols=91 Identities=13% Similarity=0.185 Sum_probs=48.7
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEE-----EEeccCCC---CcCcccccccCCCCCCCcchHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEI-----IVINPKSI---TMGQLYGQFDAVSHEWSDGILAVSYR 439 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~-----~~inPKai---t~~eLyG~~d~~T~EW~DGvls~i~R 439 (2567)
|+|+|||||||||+.+.|++.+.. ..+.. ..+.+.+- ...++++. ...-.|+++..+++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~---------~~i~~d~~~r~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~ 69 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGI---------PHISTGDMFRAAMKEETPLGLEAKSYIDK----GELVPDEVTIGIVK 69 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC---------CEEEHHHHHHHHHHTTCHHHHHHHHHHTT----TCCCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC---------cEEeHHHHHHHHHhcCCHHHHHHHHHHHC----CCCCCHHHHHHHHH
Confidence 789999999999999999876420 00000 00111100 01111111 11123556666666
Q ss_pred HHHhcCCCCceEEEeCCC-CCHHHHHHHHhhhcC
Q psy12680 440 QFAMSQNENRKWLIFDGP-VDAIWIENMNSVLDD 472 (2567)
Q Consensus 440 ~~~~~~~~~~~WivfDGp-VDa~WIEnLNSVLDD 472 (2567)
+......... -+|+||. ....+.+.+...+..
T Consensus 70 ~~l~~~~~~~-~~ildg~p~~~~~~~~~~~~~~~ 102 (216)
T 3dl0_A 70 ERLGKDDCER-GFLLDGFPRTVAQAEALEEILEE 102 (216)
T ss_dssp HHHTSGGGTT-CEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHhcccccC-CEEEeCCCCCHHHHHHHHHHHHH
Confidence 5544322233 4567774 788888888877753
No 246
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.96 E-value=0.25 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|++||||||+.+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 247
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.88 E-value=0.25 Score=57.27 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+|||||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 248
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.83 E-value=0.47 Score=53.82 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=24.1
Q ss_pred CceEEEeC--CCCCHHHHHHHHhhhcCCceeEe
Q psy12680 448 NRKWLIFD--GPVDAIWIENMNSVLDDNKKLCL 478 (2567)
Q Consensus 448 ~~~WivfD--GpVDa~WIEnLNSVLDDNK~LtL 478 (2567)
....|++| .-+++.|++-++.+.|++..+.+
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~ 108 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFC 108 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEE
Confidence 34689998 55677899999999998766544
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=87.60 E-value=0.22 Score=55.72 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=16.9
Q ss_pred EEEEEccCCCChhHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRML 385 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L 385 (2567)
-+.|+||+||||||..+++
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999973
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.52 E-value=0.31 Score=55.96 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=22.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|.|+||+||||||+.+.|...+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999998774
No 251
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.52 E-value=0.27 Score=55.58 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|++||||||+.+.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999876
No 252
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.49 E-value=0.27 Score=55.31 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|+|||||||+-+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999976
No 253
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=87.43 E-value=3.8 Score=40.72 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=56.2
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12680 2337 IVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKE 2416 (2567)
Q Consensus 2337 ~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~ 2416 (2567)
+|+|+- .....+.++......+...++.+...+.....|+.++.....++..|..+ +.-|+.....|...+.
T Consensus 2 kVKPLL-~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~ 73 (89)
T 3bas_A 2 SHMPLL-SIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNY 73 (89)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred CCCccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHH
Confidence 467765 34666777888888888888888888888889999999999999998887 4444445555555555
Q ss_pred cHHHHHHHHHHHh
Q psy12680 2417 RWSSTAKMLNEKY 2429 (2567)
Q Consensus 2417 RW~~~~~~l~~~~ 2429 (2567)
-=...+..+..++
T Consensus 74 eLE~~l~el~~rl 86 (89)
T 3bas_A 74 HLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.42 E-value=0.27 Score=56.05 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.8
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|.|+|++||||||+.+.|++.+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 7899999999999999999987
No 255
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=87.30 E-value=0.22 Score=64.04 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=30.0
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCcc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD 38 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d 38 (2567)
.||+|||||+.++.||+.+|.+++.++|++-.+
T Consensus 56 ~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 56 IGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred EcCCCCCHHHHHHHHHHHcCCCceeecchhhcc
Confidence 699999999999999999999999999977544
No 256
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.29 E-value=0.51 Score=55.28 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=52.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCCcCccccc-ccCCCCCCCcchHH---HHHHHH-
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQ-FDAVSHEWSDGILA---VSYRQF- 441 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait~~eLyG~-~d~~T~EW~DGvls---~i~R~~- 441 (2567)
-|.+.|++||||||..+.|++.+... . +.+|....=.|..=..+++.-. +.. ..+|..=... ..-|-.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~-----~-g~~v~~~treP~~t~~g~~ir~~l~~-~~~~~~~~e~llf~a~R~~~ 95 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEI-----Y-GVNNVVLTREPGGTLLNESVRNLLFK-AQGLDSLSELLFFIAMRREH 95 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHH-----H-CGGGEEEEESSCSSHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc-----c-CceeeEeeeCCCCChHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHH
Confidence 36677999999999999999998631 1 2344443446764333332111 111 1225432211 111211
Q ss_pred ----HhcCCCCceEEEeCC-------------CCCHHHHHHHHhhh
Q psy12680 442 ----AMSQNENRKWLIFDG-------------PVDAIWIENMNSVL 470 (2567)
Q Consensus 442 ----~~~~~~~~~WivfDG-------------pVDa~WIEnLNSVL 470 (2567)
....-...+|+|+|= .+|..|++.+|..+
T Consensus 96 ~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~ 141 (223)
T 3ld9_A 96 FVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLV 141 (223)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHh
Confidence 111112347999883 46788888888754
No 257
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.28 E-value=0.24 Score=59.19 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=21.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|+||+||||||+.+.|++.|
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 358899999999999999999876
No 258
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.16 E-value=0.28 Score=57.13 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+||+||||||+.+.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 259
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.03 E-value=0.3 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|.|+|++||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999976
No 260
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.95 E-value=0.36 Score=54.88 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=23.0
Q ss_pred hceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 364 VRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 364 ~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
...-|.|+|++||||||+.+.|++.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999999999999999976
No 261
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.88 E-value=0.3 Score=55.28 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-|+|+|++||||||+.+.|++.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999987
No 262
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.86 E-value=0.31 Score=55.84 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|++||||||+.+.|++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=86.86 E-value=0.25 Score=54.69 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=23.2
Q ss_pred HhceE--EEEEccCCCChhHHHHHHHHHH
Q psy12680 363 IVRWG--FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 363 ~~rhG--vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.++.| +.|+||.||||||.+++|+..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44555 7899999999999999999886
No 264
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.81 E-value=0.31 Score=54.96 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|+|++||||||+.+.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999876
No 265
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.75 E-value=0.34 Score=53.04 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
...+.|+||+||||||+.+.++..+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 266
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.75 E-value=1.1 Score=58.01 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-++|+||+||||||+++.|+.-+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhh
Confidence 4689999999999999999988764
No 267
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.73 E-value=0.59 Score=61.17 Aligned_cols=43 Identities=16% Similarity=0.347 Sum_probs=33.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT 414 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait 414 (2567)
-+.|+|+||||||+++++|..++-. ......++++.++||...
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~-----~~~p~~v~l~liDpK~~e 211 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLY-----KAQPEDVRFIMIDPKMLE 211 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHT-----TCCTTTEEEEEECCSSSG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-----hCCCceEEEEEECCchhh
Confidence 3688999999999999999886531 122346899999999643
No 268
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.58 E-value=6.3 Score=41.94 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhc
Q psy12680 2368 IVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQ 2431 (2567)
Q Consensus 2368 ~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~ 2431 (2567)
.-.+.++.....++..+..+..|+..+...+.+++.-+.....|..++..=...+..++.++..
T Consensus 59 ~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 59 AEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555556666667777777777777777777777777777777777766666553
No 269
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.53 E-value=0.23 Score=58.28 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=14.2
Q ss_pred EEEEccCCCChhHHHHHHH-HHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLS-EAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~-~Al 389 (2567)
+.|+||+||||||+.+.|. ..+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEECSCC----CHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 7899999999999999998 653
No 270
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.50 E-value=0.34 Score=55.79 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=22.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-|+|+|++||||||+.+.|++.+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999875
No 271
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.46 E-value=0.35 Score=59.87 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|||||||||+-..|++.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 58999999999999999998875
No 272
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.42 E-value=0.34 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|.|.|++||||||+-+.|++.+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 273
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.39 E-value=0.35 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|.|.|++||||||+.+.|++.+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999875
No 274
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.37 E-value=12 Score=39.83 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=72.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy12680 2338 VGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKER 2417 (2567)
Q Consensus 2338 V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~R 2417 (2567)
|+|+-. ....+.++......+...+..+...+.....|+.++.....+++.|..+++.-+..+.-|+.....|...+..
T Consensus 2 vKPLL~-~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~e 80 (129)
T 2fxo_A 2 SSPLLK-SAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQ 80 (129)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566553 3555677777888888888888888888888888888888888888888888888888888888888877777
Q ss_pred HHHHHHHHHHHhhc
Q psy12680 2418 WSSTAKMLNEKYYQ 2431 (2567)
Q Consensus 2418 W~~~~~~l~~~~~~ 2431 (2567)
=...+..+..++..
T Consensus 81 Le~~l~el~~rlee 94 (129)
T 2fxo_A 81 LEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66667666666554
No 275
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.36 E-value=0.98 Score=55.41 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-++||||+||||||.++.|+.-+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998764
No 276
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.34 E-value=0.36 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|+|+|++||||||+.+.|++.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999875
No 277
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.28 E-value=0.34 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|++||||||+.+.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999876
No 278
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.16 E-value=0.25 Score=55.39 Aligned_cols=24 Identities=33% Similarity=0.126 Sum_probs=17.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|++||||||+.+.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358899999999999999998876
No 279
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.05 E-value=0.36 Score=55.85 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.6
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+|||||||+|.-+.|++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999886
No 280
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.04 E-value=0.37 Score=54.09 Aligned_cols=24 Identities=42% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-|.|+|++||||||+.+.|++.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999774
No 281
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=86.04 E-value=15 Score=40.11 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q psy12680 2326 IAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELD-------LCV 2398 (2567)
Q Consensus 2326 ~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~-------~~~ 2398 (2567)
.|=.+|..|.+ ....|+.++..+..+..+....+.+|..+...+..|+..-+.+....+.++.++. .++
T Consensus 15 ~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 15 KNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888 8889999999999999998888888888888888777665555544444444443 334
Q ss_pred HHHHHHHHHHhh-------hhhhhccHHHHHHHHHHHhh
Q psy12680 2399 KKKQRAEDLIGK-------LGGEKERWSSTAKMLNEKYY 2430 (2567)
Q Consensus 2399 ~rl~rA~~Li~~-------L~~Ek~RW~~~~~~l~~~~~ 2430 (2567)
.|-+-|++-+.. |.++-..|+.....+...+.
T Consensus 91 ~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 91 TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 44444445555555544444
No 282
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=85.98 E-value=0.23 Score=55.73 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=22.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.|.|||++||||||+.+.|...+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999999875
No 283
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.98 E-value=0.3 Score=57.22 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|++||||||+.+.|++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999875
No 284
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.95 E-value=0.31 Score=59.47 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|||||||||+.+.|++.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 285
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.92 E-value=0.28 Score=58.07 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|..-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999987653
No 286
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=85.89 E-value=0.29 Score=56.23 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~ 387 (2567)
-|.|+||+||||||+.+.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=85.87 E-value=0.39 Score=54.80 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=21.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
+.|+||+||||||+++.|+.-+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999998764
No 288
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=85.67 E-value=0.48 Score=53.79 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=40.4
Q ss_pred CCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccH------------------HHHHHhhhhhhhcCccccccccccC
Q psy12680 6 EGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDY------------------IGLGKFFKGLIATGAWACFDEFNRI 64 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~------------------~~m~rif~Gl~q~GaW~CFDEfNri 64 (2567)
.||.|+|||+....+++.+ |+.|+++...-...+ .....++.=+........+||.+++
T Consensus 9 ~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE~Q~~ 88 (184)
T 2orw_A 9 TGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQFF 88 (184)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECCGGGS
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEECcccC
Confidence 6999999999987777654 788888754421111 0111122111112457789999999
Q ss_pred CchhHHHH
Q psy12680 65 DVEVLSVV 72 (2567)
Q Consensus 65 ~~~vLSvv 72 (2567)
+++++..+
T Consensus 89 ~~~~~~~l 96 (184)
T 2orw_A 89 NPSLFEVV 96 (184)
T ss_dssp CTTHHHHH
T ss_pred CHHHHHHH
Confidence 87755544
No 289
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.65 E-value=0.38 Score=55.71 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.6
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|.|++||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 290
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.59 E-value=0.39 Score=59.00 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-|+|+||+||||||.++.|+..+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999999999998774
No 291
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.43 E-value=0.39 Score=57.27 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
..-|.|+|++||||||+.+.|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999986
No 292
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.40 E-value=0.41 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
|.|.|++||||||+.+.|++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999774
No 293
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=85.39 E-value=0.25 Score=63.26 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=42.6
Q ss_pred EEEEEEcCCCCccccccCCCChHHHHHHHhhcccccccCcceeeee-eeeeeeeecCCCCCCC--------CCCcchhcc
Q psy12680 1420 RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKL-IEIQLMCAMGPPSTGN--------TVTPRFSRH 1490 (2567)
Q Consensus 1420 ~~vvFiDDiNmP~~d~yGtQ~~ielLRQlid~~g~ydr~~~~~~~i-~diq~v~am~Ppggg~--------~is~Rf~r~ 1490 (2567)
.=|+|+|++|--.+ ...+-|++-|+.+-.-= . .. .+ .++.++||+||-+... .+++-++..
T Consensus 301 gGvl~lDEIn~~~~------~~qsaLlEaMEe~~VtI-~-G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDR 370 (506)
T 3f8t_A 301 GGILAVDHLEGAPE------PHRWALMEAMDKGTVTV-D-GI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSH 370 (506)
T ss_dssp TSEEEEECCTTCCH------HHHHHHHHHHHHSEEEE-T-TE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTT
T ss_pred CCeeehHhhhhCCH------HHHHHHHHHHhCCcEEE-C-CE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhh
Confidence 35899999994322 23567777777665421 1 22 33 5789999999976211 566667777
Q ss_pred cccee--ccCCCHHH
Q psy12680 1491 FNQIV--INKFDDDT 1503 (2567)
Q Consensus 1491 f~vi~--i~~p~~~s 1503 (2567)
|-++. +++|+.+.
T Consensus 371 FDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 371 FDLIAFLGVDPRPGE 385 (506)
T ss_dssp CSEEEETTC------
T ss_pred eeeEEEecCCCChhH
Confidence 74433 56666543
No 294
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=85.38 E-value=0.37 Score=55.25 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|.|+|++||||||+.+.|++ +
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEECCCCcCHHHHHHHHHH-C
Confidence 78999999999999999988 5
No 295
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.26 E-value=6.5 Score=39.97 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2344 ALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAED 2406 (2567)
Q Consensus 2344 ~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~ 2406 (2567)
+..+++..+..++.+...++.++..++.+++.++.+++.+..........++..+.+...|+.
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444443
No 296
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.16 E-value=0.26 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-|.|+|++||||||..+.|++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 297
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.10 E-value=0.59 Score=57.16 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+||||||||++...|++.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 357899999999999999998865
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=85.07 E-value=0.37 Score=55.85 Aligned_cols=24 Identities=17% Similarity=-0.060 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
..-+.|+||+||||||++++|..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999876
No 299
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.88 E-value=10 Score=38.48 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2334 VAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAED 2406 (2567)
Q Consensus 2334 V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~ 2406 (2567)
|-+++.-++.....+......+++.+...+.....+++.+..|+..+.....+.+..+..+..++.+|+.+.+
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek 79 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEK 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555554444444444444444444444444
No 300
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.80 E-value=1.2 Score=55.74 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-++||||+||||||.++.|+.-+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Confidence 4589999999999999999998764
No 301
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=84.76 E-value=0.44 Score=55.36 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|++||||||+.+.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999986
No 302
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.72 E-value=0.38 Score=55.10 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|++||||||+.+.|++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998865
No 303
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.69 E-value=0.79 Score=59.67 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.+|+++.||||||||++.+.+++.+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 4799999999999999999999886
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.47 E-value=0.41 Score=56.82 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||.+++|+.-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998654
No 305
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.46 E-value=3.9 Score=58.32 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhh
Q psy12680 2351 KLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYY 2430 (2567)
Q Consensus 2351 ~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~ 2430 (2567)
+++..++++.+.+.++..++++++.|++++++..+|++.++++.+.++..|+ ..++.|..|+..=++++.+++..+.
T Consensus 971 ~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666777888888899999999999999999999888888887665 7788888888888888888875443
No 306
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=84.45 E-value=0.35 Score=56.72 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||.+++|+.-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999987653
No 307
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.43 E-value=0.5 Score=55.67 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
..-|.|+||+||||||+.+.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998876
No 308
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=84.42 E-value=0.82 Score=51.40 Aligned_cols=26 Identities=27% Similarity=0.074 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
..-++++|++||||||+++.|...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 35689999999999999999988764
No 309
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=84.38 E-value=0.33 Score=57.98 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|+|||||||+.+.|++.+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998865
No 310
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.33 E-value=7.5 Score=39.54 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12680 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIG 2409 (2567)
Q Consensus 2342 ~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~ 2409 (2567)
..+..+++..+..++.+...++.++..+..+++.++.+++.+..........++..+.+...|+.=+.
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~eva 89 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVA 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666666666666666666666666555555555555555555554333
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.26 E-value=0.47 Score=58.16 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
..-+.||||+||||||++++|..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3458899999999999999999876
No 312
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.25 E-value=0.51 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|+|+|++||||||+.+.|++.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999999875
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=84.24 E-value=0.49 Score=58.40 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|.|+||+||||||+.++|...+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3478999999999999999998874
No 314
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=84.23 E-value=0.37 Score=57.07 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|..-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998654
No 315
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=84.22 E-value=0.99 Score=56.20 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQL 391 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~ 391 (2567)
+..|+|+||+||||||+.+.|+..+..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 456999999999999999999998753
No 316
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.21 E-value=0.48 Score=56.20 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|.|||||||||+.+.|++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998876
No 317
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.19 E-value=7.7 Score=37.47 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Q psy12680 2362 KQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEK 2428 (2567)
Q Consensus 2362 ~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~ 2428 (2567)
.+++++..-+.++-|+-+.++...+...|.++.+..+..-+.-..=...|..|+..|.+.+..+=.+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444444433333222222222234555555565555554333
No 318
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.15 E-value=0.57 Score=60.10 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=21.9
Q ss_pred hceE-EEEEccCCCChhHHHHHHHHHH
Q psy12680 364 VRWG-FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 364 ~rhG-vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.+.| |.|+||+||||||.+++|...+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3455 6799999999999999998765
No 319
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.14 E-value=0.45 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|+|+|++||||||+.+.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998865
No 320
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.13 E-value=0.44 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.091 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-++|+||+||||||+++.|.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999988876
No 321
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.06 E-value=1.6 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|+|||||||||+-+.|++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 468999999999999999999876
No 322
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.94 E-value=1.2 Score=55.52 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=29.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCC
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSI 413 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKai 413 (2567)
.-|.|+|||||||||+++.|...+.. .+..+.+.-.+|.+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~-------~~g~v~i~~~d~~~~ 96 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTA-------AGHKVAVLAVDPSST 96 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhh-------CCCEEEEEEEcCccc
Confidence 45889999999999999999987631 123566666666543
No 323
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=83.93 E-value=1.3 Score=55.99 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=52.8
Q ss_pred CCCCCCCchhHHHHHHHHhcCe--EEEEeCCCCccHHHHHHhh-------hh----------hhhcCccccccccccCCc
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKL--CIVFNCSDSMDYIGLGKFF-------KG----------LIATGAWACFDEFNRIDV 66 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~--~~vfNCs~~~d~~~m~rif-------~G----------l~q~GaW~CFDEfNri~~ 66 (2567)
.|++||||+...+.+.+.-++. .+.+||+.--+-..-+.+| .| .|..|. ..+||+.+++.
T Consensus 158 ~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gt-lfldei~~l~~ 236 (368)
T 3dzd_A 158 TGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGT-LFLDEVGELDQ 236 (368)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSE-EEEETGGGSCH
T ss_pred EeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCe-EEecChhhCCH
Confidence 5999999999999998888776 8999999755444444443 11 244454 89999999999
Q ss_pred hhHHHHHHHHH
Q psy12680 67 EVLSVVAQQIL 77 (2567)
Q Consensus 67 ~vLSvvaqqi~ 77 (2567)
++...+.+-++
T Consensus 237 ~~Q~~Ll~~l~ 247 (368)
T 3dzd_A 237 RVQAKLLRVLE 247 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777766554
No 324
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=83.86 E-value=0.51 Score=55.99 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|-|+||+||||||+.++|+..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 325
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.85 E-value=0.52 Score=58.52 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-.-++++||+||||||.++.|+..+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999998764
No 326
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.54 E-value=0.69 Score=56.50 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+||||||||++...|++.+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 468899999999999999998875
No 327
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=83.46 E-value=0.46 Score=59.54 Aligned_cols=22 Identities=36% Similarity=0.387 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3789999999999999997763
No 328
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.43 E-value=0.42 Score=55.66 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=18.6
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~A 388 (2567)
+.|+||+||||||.+++|...
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998654
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.33 E-value=0.44 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|+|++||||||+.+.|++.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 347899999999999999988754
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.33 E-value=0.65 Score=51.93 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=28.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccC
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPK 411 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPK 411 (2567)
+-++++|++||||||+...|...+.. . +.+|......|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~------~-g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR------E-GWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH------T-TCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh------c-CCeeeEEEeCCC
Confidence 46899999999999999999998752 1 235555555553
No 331
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.28 E-value=5.5 Score=38.46 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhcchhH
Q psy12680 2366 NRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGD 2435 (2567)
Q Consensus 2366 l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~l~GD 2435 (2567)
+..+++|++.+-+...-...|.++|+.+-..+....+.|..=...|..|..++++.....++++..|+|-
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555666555555555555555555556666666666666666666665553
No 332
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=83.28 E-value=13 Score=36.71 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhccHHHH
Q psy12680 2344 ALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVK--KKQRAEDLIGKLGGEKERWSST 2421 (2567)
Q Consensus 2344 ~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~--rl~rA~~Li~~L~~Ek~RW~~~ 2421 (2567)
.+..+...|..|++.|..++..+.++.+.+..++...+ ..+-|+.+++.-+. .-+||.+ ..+.+|+.+-..+
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E----~i~vLk~Qv~IY~~DF~aERadR--Ekl~~eKe~L~~q 76 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME----TVPVLKAQADIYKADFQAERHAR--EKLVEKKEYLQEQ 76 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--HHHHHTTSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHH
Confidence 35567777788888888888888887777777765443 34445555554443 3455555 7788999999999
Q ss_pred HHHHHHHhhcchhHH
Q psy12680 2422 AKMLNEKYYQLTGDV 2436 (2567)
Q Consensus 2422 ~~~l~~~~~~l~GD~ 2436 (2567)
+..+..+...|.-+|
T Consensus 77 l~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 77 LEQLQREFNKLKVGC 91 (94)
T ss_dssp HHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999888876554
No 333
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=83.15 E-value=0.43 Score=57.39 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999987654
No 334
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=83.07 E-value=0.43 Score=57.74 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|..-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998664
No 335
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=83.03 E-value=0.78 Score=63.14 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 332 LNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 332 l~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
|...+.+.+++.|+..--.+..++++. +....-++++||||||||+++-.
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~---i~~~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEK---VFSGKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHH---HTTCSCEEEECSSHHHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHH---HhCCCcEEEEcCCccHHHHHHHH
Confidence 566777777777773333344555554 33467899999999999998743
No 336
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.94 E-value=0.45 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+||+||||||++++|..-+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999986643
No 337
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.93 E-value=0.44 Score=56.56 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+||+||||||++++|+.-+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987643
No 338
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=82.89 E-value=0.56 Score=61.77 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.9
Q ss_pred HHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 361 MMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 361 ~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.+..+..+.|+|||||||||.+++|...+
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44566779999999999999999886644
No 339
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=82.85 E-value=1.1 Score=55.83 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=29.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCC
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSI 413 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKai 413 (2567)
.-|.++|++|+||||+++.|...+.. . +.++.+...+|-+.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~------~-~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIR------E-GLKVAVIAVDPSSP 97 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH------T-TCCEEEEEECCC--
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh------c-CCeEEEEeecCCcC
Confidence 46889999999999999999988742 1 24566666666543
No 340
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=82.81 E-value=0.45 Score=57.02 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||.+++|..-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998654
No 341
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.80 E-value=0.52 Score=54.79 Aligned_cols=24 Identities=21% Similarity=-0.017 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-+.|+||+||||||+++.|+..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998754
No 342
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=82.77 E-value=0.45 Score=57.33 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|..-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998764
No 343
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.75 E-value=0.48 Score=60.63 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=18.2
Q ss_pred EEEEccCCCChhHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~ 387 (2567)
++|+||+|+||||++++|..
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999864
No 344
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.69 E-value=0.46 Score=56.32 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||.+++|+.-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998654
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=82.64 E-value=0.62 Score=52.12 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=34.5
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCC-c--------cHHHHHHhhhhh-----hhcCcccccc
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDS-M--------DYIGLGKFFKGL-----IATGAWACFD 59 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~-~--------d~~~m~rif~Gl-----~q~GaW~CFD 59 (2567)
..||.|+|||.++..|++.| |..|.++.++.. . |..-+.+. |. ...|+|.|+-
T Consensus 9 i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~diD~~~g~D~~r~~~a--Ga~~v~~~s~~~~~~~~ 78 (169)
T 1xjc_A 9 VVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERA--GAVATAVEGDGLLQLHL 78 (169)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------------CSEEEEEETTEEEEEE
T ss_pred EECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcccccCCChhHHHHHhc--CCCeEEeccCCEEEEEe
Confidence 36999999999999999876 677889998754 2 23223222 54 4678898865
No 346
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.48 E-value=1.6 Score=51.11 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 334 KAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 334 ~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
..+.+.+.+.|+..-..+..+++.. +...+.+++++|||||||.++-.
T Consensus 34 ~~l~~~l~~~~~~~~~~~Q~~~i~~---~~~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 34 KKTLKGLQEAQYRLVTEIQKQTIGL---ALQGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp HHHHHHHHHTTCCBCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEEeCCCCcHHHHHHH
Confidence 3445556677876655556666543 33456799999999999998654
No 347
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=82.48 E-value=0.53 Score=59.42 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3689999999999999998754
No 348
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.48 E-value=0.54 Score=55.41 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||.+++|+..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999843
No 349
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=82.37 E-value=0.58 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
..-|.|+|++||||||+.+.|++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999998873
No 350
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=82.36 E-value=0.55 Score=56.00 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|..-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999998763
No 351
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=82.33 E-value=0.55 Score=56.60 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 352
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=82.33 E-value=0.54 Score=58.87 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998753
No 353
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.23 E-value=0.49 Score=56.81 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|..-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998764
No 354
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=82.17 E-value=0.5 Score=55.62 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|..-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998654
No 355
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=82.13 E-value=0.54 Score=59.23 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 361 MMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 361 ~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.+.-+.-+.|+||+||||||+++.|...+
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34445568999999999999999987754
No 356
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=82.09 E-value=0.56 Score=58.87 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3679999999999999998764
No 357
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=82.08 E-value=0.5 Score=56.82 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999997654
No 358
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.03 E-value=1.1 Score=57.30 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhceE-EEEEccCCCChhHHHHHHHHH
Q psy12680 353 EKIQQIYEMMIVRWG-FMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 353 ~Kv~QLye~~~~rhG-vmlvGp~gsGKSt~~~~L~~A 388 (2567)
.++.+..+....+.| |.|+||+|+||||.+++|..-
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 344444444444554 568999999999999998763
No 359
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=81.98 E-value=0.57 Score=58.89 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999998764
No 360
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=81.94 E-value=0.79 Score=52.40 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|.|+|++||||||+-+.|++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47799999999999999999864
No 361
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.93 E-value=8.1 Score=51.83 Aligned_cols=72 Identities=22% Similarity=0.166 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhc
Q psy12680 2360 HEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQ 2431 (2567)
Q Consensus 2360 ~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~ 2431 (2567)
++.+++.+..+.+++.++++.++..++.+.++++.+..+++++..++.+.-|..|...|+++++++.+++..
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445555666666677777777777777788888888888888888888889999999999998887764
No 362
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.93 E-value=0.51 Score=57.03 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+||+||||||++++|..-+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 363
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=81.82 E-value=1.1 Score=58.97 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=33.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCC
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSI 413 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKai 413 (2567)
-++|.|.||||||+++++|..++-. ......++++.|+||-.
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~-----~~sP~ev~lilIDpKg~ 257 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILF-----KSTPSEARLIMIDPKML 257 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHT-----TCCTTTEEEEEECSSSH
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHH-----hCCCcceEEEEeCCChh
Confidence 3588999999999999999888732 11234689999999963
No 364
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.80 E-value=0.52 Score=56.45 Aligned_cols=22 Identities=36% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999997654
No 365
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.62 E-value=2 Score=49.94 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 333 NKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 333 ~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
...+.+.+.+.|+..-..+..+++.. +...+.+++++|||||||.++-.
T Consensus 28 ~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 28 YPDLLKSIIRVGILKPTPIQSQAWPI---ILQGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCChHHHHHHH
Confidence 34566667777884433444455433 33456789999999999998654
No 366
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=81.54 E-value=0.73 Score=56.22 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQL 391 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~ 391 (2567)
+.-|.|+||+||||||+.+.|+..+..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999998863
No 367
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=81.46 E-value=0.35 Score=55.03 Aligned_cols=22 Identities=36% Similarity=0.748 Sum_probs=19.2
Q ss_pred CCeEEecCCCCCccceeehhhh
Q psy12680 782 KPVMFIGPTGTGKSCYITVSIL 803 (2567)
Q Consensus 782 ~pvll~G~~GtGKT~~i~~~~~ 803 (2567)
+|+.|+||+|+||||+++.++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999876553
No 368
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=81.43 E-value=0.61 Score=58.89 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999998653
No 369
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=81.40 E-value=0.6 Score=59.23 Aligned_cols=22 Identities=14% Similarity=0.150 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999998763
No 370
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=81.40 E-value=0.61 Score=58.82 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999998764
No 371
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=81.36 E-value=1 Score=58.70 Aligned_cols=19 Identities=53% Similarity=0.746 Sum_probs=17.8
Q ss_pred CCCCCCCchhHHHHHHHHh
Q psy12680 6 EGPAGTGKTETTKDLAKAV 24 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~l 24 (2567)
.||||||||.+++.+++.|
T Consensus 51 ~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 51 NGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 6999999999999999887
No 372
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.27 E-value=12 Score=37.98 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=54.5
Q ss_pred HHHHhHhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2311 VKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDL 2390 (2567)
Q Consensus 2311 v~~aS~Aa~~Lc~WV~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L 2390 (2567)
|+.-|.||.- =.+|.-+-.+|-.- ++.+|.++++.|..++++-..+...+..+.+.|.+.+.+- .++.++|
T Consensus 6 vkANSeAC~d---GLrAq~ECrN~T~l---Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeL 76 (121)
T 3mq7_A 6 DKANSEAARD---GLRAVMEARNVTHL---LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEEL 76 (121)
T ss_dssp -----CHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred hhhccHHHHH---HHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3444556642 22344444444333 5667777777777777777766666666666666655553 3346667
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12680 2391 QDELDLCVKKKQRAEDLIGKLGGEK 2415 (2567)
Q Consensus 2391 ~~~~~~~~~rl~rA~~Li~~L~~Ek 2415 (2567)
+.++.....+|..|..=+.-|..|.
T Consensus 77 qgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 77 EGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777777776666555554443
No 373
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=81.21 E-value=0.71 Score=56.81 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|.|+||+||||||+.++|+..+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999998876
No 374
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=81.20 E-value=0.56 Score=56.92 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+||+||||||++++|+.-+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999987643
No 375
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=81.11 E-value=0.57 Score=55.86 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+||+||||||.+++|..-+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36799999999999999987643
No 376
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=81.06 E-value=0.71 Score=53.49 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|.|+|++||||||+.+.|++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999976
No 377
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=81.05 E-value=0.7 Score=52.34 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
.-|.|+|++|+||||+++.|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999988753
No 378
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=81.01 E-value=3.5 Score=53.03 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=52.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC-------cCcccccccCCCCCCCcc--hHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT-------MGQLYGQFDAVSHEWSDG--ILA 435 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait-------~~eLyG~~d~~T~EW~DG--vls 435 (2567)
..-|+++|++|+||||+...|+.++.. . +.+|-+...+|--.. ..+..|.--.....+.|- ++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~------~-G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK------R-GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT------T-TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH------C-CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHH
Confidence 357899999999999999999998752 1 345555544443211 111111100011223442 222
Q ss_pred HHHHHHHhcCCCCceEEEeCCC----CCHHHHHHHHhhh
Q psy12680 436 VSYRQFAMSQNENRKWLIFDGP----VDAIWIENMNSVL 470 (2567)
Q Consensus 436 ~i~R~~~~~~~~~~~WivfDGp----VDa~WIEnLNSVL 470 (2567)
..++.+. ......||+|.+ .|...++-|..+.
T Consensus 173 ~al~~a~---~~~~DvVIIDTaGrl~~d~~lm~el~~i~ 208 (443)
T 3dm5_A 173 EGVDYFK---SKGVDIIIVDTAGRHKEDKALIEEMKQIS 208 (443)
T ss_dssp HHHHHHH---HTTCSEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHH---hCCCCEEEEECCCcccchHHHHHHHHHHH
Confidence 3333322 123468999964 5777777776554
No 379
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=80.84 E-value=1.4 Score=60.57 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 334 KAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 334 ~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
..+.+.+++.|+..--.+..++++- .+....-++++||||||||+++-.
T Consensus 17 ~~~~~~l~~~g~~~l~~~Q~~~i~~--~~~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 17 SNVIEIIKKRGIKKLNPPQTEAVKK--GLLEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp HHHHHHHHTTSCCBCCHHHHHHHHT--TTTTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHH--HhcCCCcEEEEcCCCCcHHHHHHH
Confidence 4455666778884444455555542 133467899999999999999744
No 380
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=80.83 E-value=2.5 Score=54.31 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCCC-------cCcccccccCCCCCCCcchHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSIT-------MGQLYGQFDAVSHEWSDGILAVSYRQ 440 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKait-------~~eLyG~~d~~T~EW~DGvls~i~R~ 440 (2567)
|+++||+|+||||+...|+..+ ...+.+|-+...++--.. ..+..|.--.....+.| -.....+.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l-------~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d-p~~i~~~a 171 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFY-------KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN-PIEIAKKG 171 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHH-------HHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC-HHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-------HHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC-HHHHHHHH
Q ss_pred HHhcCCCCceEEEeC----CC--CCHHHHHHHHhhhc
Q psy12680 441 FAMSQNENRKWLIFD----GP--VDAIWIENMNSVLD 471 (2567)
Q Consensus 441 ~~~~~~~~~~WivfD----Gp--VDa~WIEnLNSVLD 471 (2567)
.......+..+|++| .+ .|+..++-|..++.
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~ 208 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 208 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHH
No 381
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=80.75 E-value=0.61 Score=59.97 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.++++++||||||||++.+.|++.+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998876
No 382
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=80.73 E-value=1.9 Score=54.38 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHcCCccC---------hHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 329 YTILNKAVREVCEKANLQVT---------PFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 329 ~~~l~~ai~~~~~~~~l~~~---------~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
...+.+.+.+.+++.|+.+. ..-++.+++..+.+.-..-|+++|.||+||||.++.|....
T Consensus 117 ~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 117 YPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhhc
Confidence 45566666666777776321 12244444444443345579999999999999999998875
No 383
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.64 E-value=0.49 Score=58.14 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|.||||+||||||++++|..-+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58899999999999999887643
No 384
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.61 E-value=0.81 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|.|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999876
No 385
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=80.53 E-value=1.4 Score=60.62 Aligned_cols=48 Identities=8% Similarity=-0.027 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHH
Q psy12680 334 KAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYR 383 (2567)
Q Consensus 334 ~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~ 383 (2567)
..+.+.+++.|+..--.+..+++.. .+....-++++||||||||+++-
T Consensus 10 ~~~~~~l~~~g~~~l~~~Q~~~i~~--~~~~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 10 ERIKSTLKERGIESFYPPQAEALKS--GILEGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp HHHHHHHHHTTCCBCCHHHHHHHTT--TGGGTCEEEEECCGGGCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCCcEEEEcCCccHHHHHHH
Confidence 3455666778884444555666653 13336789999999999999874
No 386
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=80.51 E-value=1.6 Score=52.28 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 333 NKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 333 ~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
...+.+.+++.|+..-..+..+++...- ....+++++|||||||.++-.
T Consensus 62 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~---~~~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 62 NENTLKAIKEMGFTNMTEIQHKSIRPLL---EGRDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CHHHHHHHHHTTCCBCCHHHHHHHHHHH---HTCCCEECCCTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHh---CCCcEEEEccCCCCchHHHHH
Confidence 3455566677888854455555554322 235589999999999998644
No 387
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=80.51 E-value=0.61 Score=55.73 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+||+||||||++++|+.-+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987643
No 388
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.45 E-value=12 Score=40.22 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2326 IAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQD 2392 (2567)
Q Consensus 2326 ~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~ 2392 (2567)
.....|.+..+.+.-+++.+++.++++.....+|...+.++.+++.++.+|++++++...+..+|+.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555554444444444444444444444444444444444444444444444444444433
No 389
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.38 E-value=0.62 Score=56.11 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||.+++|+.-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4779999999999999997654
No 390
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=80.27 E-value=0.52 Score=58.90 Aligned_cols=22 Identities=32% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999998754
No 391
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=80.24 E-value=0.82 Score=56.49 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-|-|.||+||||||+.+.|...+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999988763
No 392
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=80.19 E-value=0.78 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
--|.|+|++|+||||+++.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999998753
No 393
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=80.00 E-value=1 Score=55.29 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCChhHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLS 386 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~ 386 (2567)
..-+.|+||+|+||||++++|.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999988
No 394
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.95 E-value=25 Score=50.25 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q psy12680 2082 VKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVT 2135 (2567)
Q Consensus 2082 ~k~~el~~~~~rl~~GL~KL~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~ 2135 (2567)
+...+++...+.++.=...+.++...|..|++++++++.++++..++.+.+..+
T Consensus 960 ~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444455555556666666665555555555554444333
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.92 E-value=0.93 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-..|+||+||||||++..+.-++
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999888876
No 396
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=79.92 E-value=0.71 Score=59.95 Aligned_cols=28 Identities=36% Similarity=0.232 Sum_probs=23.1
Q ss_pred HhceE--EEEEccCCCChhHHHHHHHHHHH
Q psy12680 363 IVRWG--FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 363 ~~rhG--vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.++.| |+|+||+||||||++|+|+.-+.
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 34455 99999999999999999987653
No 397
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.91 E-value=1.2 Score=50.80 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 334 KAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 334 ~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
..+.+.+.+.|+..-..+..+++.. +...+.+++.+|||||||.++-.
T Consensus 10 ~~l~~~l~~~~~~~~~~~Q~~~i~~---~~~~~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 10 PEILEALHGRGLTTPTPIQAAALPL---ALEGKDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHH---HcCCCCEEEECCCCChHHHHHHH
Confidence 3455566677875444445555443 23356799999999999987543
No 398
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.79 E-value=0.9 Score=55.81 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-++++||+||||||+...|+..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 399
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=79.70 E-value=0.67 Score=55.68 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.5
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~ 387 (2567)
-+.|+||+||||||.+++|+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999765
No 400
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.69 E-value=1.3 Score=49.74 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHH
Q psy12680 351 FLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 351 ~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
++.|+.+++. ..+.-|+++|++|+||||+++.|..
T Consensus 4 ~~~~~~~~~~--~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 4 LFTRIWRLFN--HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHHHHHT--TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHhcC--CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4556666433 4466799999999999999988764
No 401
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=79.56 E-value=1.1 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=19.4
Q ss_pred HhceEEEEEccCCCChhHHHHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLS 386 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~ 386 (2567)
.-..-++++|||||||||++..+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 345679999999999999877653
No 402
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.56 E-value=16 Score=39.26 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=32.3
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2333 KVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKK 2400 (2567)
Q Consensus 2333 ~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~r 2400 (2567)
.+..+.--.+++.+.++++++....++.....+|...+.+++.++.+.++..++.+.|+.++...+..
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333455555555555555444444444444444444444444444444444444444444333
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=79.52 E-value=0.74 Score=56.76 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|+|+|||||||||+-+.|++.+
T Consensus 8 i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
No 404
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=79.50 E-value=0.67 Score=61.51 Aligned_cols=39 Identities=28% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhceE--EEEEccCCCChhHHHHHHHHHHH
Q psy12680 352 LEKIQQIYEMMIVRWG--FMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 352 i~Kv~QLye~~~~rhG--vmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
+.+++.-+....++.| |.|+|++||||||+.+.|+..+.
T Consensus 354 V~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 354 VLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 4455544432234444 88999999999999999999874
No 405
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.47 E-value=17 Score=48.73 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q psy12680 2106 SQIAVMREEIEYLQPFLMVSAANIKELMVTVEK 2138 (2567)
Q Consensus 2106 ~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~ 2138 (2567)
+.+++.++.+......+.+.....++.++++++
T Consensus 484 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 516 (597)
T 3oja_B 484 AEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKE 516 (597)
T ss_dssp HHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhcCccccccCCHHHHHHHHHHHHHh
Confidence 334444444433333333333444444444433
No 406
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.24 E-value=1.2 Score=56.12 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=23.6
Q ss_pred HHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 362 MIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 362 ~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
..-+.++.|+||+||||||+.+.|+..+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3445689999999999999999999753
No 407
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.09 E-value=1.8 Score=48.63 Aligned_cols=28 Identities=18% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCCCCCCchhHHHHHHHHhcC---eEEEEe
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAK---LCIVFN 32 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~---~~~vfN 32 (2567)
..||.|+|||+..+.|++.+|. .+.+++
T Consensus 6 i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 6 VTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 3699999999999999999983 255553
No 408
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=79.00 E-value=0.82 Score=57.35 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+-|+||+||||||++++|..-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999987653
No 409
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.95 E-value=1 Score=55.07 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=40.7
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVL 69 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vL 69 (2567)
..||+|+|||...+.||+.++ +.+.||+.- ++++|+.-+-+----+|-+.++...+
T Consensus 8 i~GptgsGKt~la~~La~~~~--~~iis~Ds~-------QvYr~~~igTakp~~~E~~gvphhli 63 (322)
T 3exa_A 8 IVGPTAVGKTKTSVMLAKRLN--GEVISGDSM-------QVYRGMDIGTAKITAEEMDGVPHHLI 63 (322)
T ss_dssp EECCTTSCHHHHHHHHHHTTT--EEEEECCGG-------GGBTTCCTTTTCCCHHHHTTCCEESS
T ss_pred EECCCcCCHHHHHHHHHHhCc--cceeecCcc-------cceeeeeecCCCCCHHHHcCCCEEEe
Confidence 469999999999999999997 567787652 35556655556666666666665444
No 410
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.95 E-value=2.9 Score=49.16 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 333 NKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 333 ~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
...+.+.+.+.|+..-..+..+++.. +...+.+++.+|||||||.++-.
T Consensus 37 ~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~l~~a~TGsGKT~~~~l 85 (245)
T 3dkp_A 37 NSRLLQNILDAGFQMPTPIQMQAIPV---MLHGRELLASAPTGSGKTLAFSI 85 (245)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCCcHHHHHHH
Confidence 35567777888987444455555533 33356699999999999998643
No 411
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.89 E-value=1.5 Score=50.01 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 334 KAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 334 ~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
..+.+.+.+.|+..-..+..+++.. +...+.+++++|||||||.++-.
T Consensus 12 ~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 12 RELLMGIFEMGWEKPSPIQEESIPI---ALSGRDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp HHHHHHHHTTTCCSCCHHHHHHHHH---HHTTCCEEEECCSSSTTHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHH---HccCCCEEEECCCCCchHHHHHH
Confidence 4455566677875444455555543 33456799999999999987643
No 412
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.87 E-value=0.92 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
.+|+|+||||+||||+..-|++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999987777664
No 413
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=78.80 E-value=0.74 Score=56.15 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|..-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3789999999999999997654
No 414
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=78.70 E-value=0.87 Score=54.22 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|.|.|++||||||+-+.|++.+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999999763
No 415
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.54 E-value=1 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-|+++||+|+||||+...|+..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 416
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=78.49 E-value=1 Score=50.09 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCS 34 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs 34 (2567)
..||+|+|||+..|.|++.||.+.+.+..+
T Consensus 8 l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 369999999999999999999887765543
No 417
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=78.41 E-value=0.86 Score=56.67 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.4
Q ss_pred HhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 363 IVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 363 ~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-..-+.|+||+||||||++++|...+
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568999999999999999987754
No 418
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=78.34 E-value=0.55 Score=58.90 Aligned_cols=22 Identities=41% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-+.|+||+||||||++++|+.-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3679999999999999998753
No 419
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=78.23 E-value=1.1 Score=52.10 Aligned_cols=25 Identities=16% Similarity=-0.019 Sum_probs=21.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
.-++|+||+||||||+.+.++..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999986653
No 420
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=78.20 E-value=1.6 Score=50.44 Aligned_cols=44 Identities=20% Similarity=0.073 Sum_probs=30.6
Q ss_pred CccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 345 LQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 345 l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
|..+.....+.-.++..-. ..-|+++|++|+||||+++.|...+
T Consensus 11 l~~~~~~~~~~~~~~~~~~-~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESG-TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHT-CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccC-ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4444444555555554333 3578999999999999999988775
No 421
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=78.13 E-value=0.93 Score=50.89 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEE
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCI 29 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~ 29 (2567)
..||.|+|||+..+.||+.+|.+++
T Consensus 10 l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 10 LIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3699999999999999999998765
No 422
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=78.11 E-value=0.97 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.2
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|.++|++|+||||+++.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999998854
No 423
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=78.05 E-value=0.86 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.--|+|+||+|+||||++++|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 34679999999999999999764
No 424
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=77.98 E-value=1 Score=49.01 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
..-|+++|++|+||||+++.|..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34689999999999999998864
No 425
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=77.98 E-value=1.8 Score=49.81 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=35.2
Q ss_pred CCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhh
Q psy12680 6 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFF 46 (2567)
Q Consensus 6 ~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif 46 (2567)
.||+|+|||..++.|+..-|..|+.+++.++++...+.++.
T Consensus 26 ~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~ 66 (220)
T 2cvh_A 26 YGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMA 66 (220)
T ss_dssp ECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHH
Confidence 57999999999999998788999999999888776666554
No 426
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=77.66 E-value=1.5 Score=55.05 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=28.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccCCC
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSI 413 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPKai 413 (2567)
.-|.|+|+||+||||+++.|..++.. . +.++.+...+|-+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~------~-~~~v~V~~~dp~~~ 115 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTE------R-GHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH------T-TCCEEEEECCC---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhh------c-CCeEEEEeecCCCC
Confidence 45889999999999999999987642 1 23555555555543
No 427
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.66 E-value=1.1 Score=52.60 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-|.|+|++||||||+.+.|++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999876
No 428
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=77.63 E-value=0.96 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.5
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+|+|++|+||||+++.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998875
No 429
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=77.57 E-value=1.1 Score=50.42 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q psy12680 1808 FMIVGLSFAGKTCAYRMLSE 1827 (2567)
Q Consensus 1808 ~lLVG~~GSGK~sl~rlla~ 1827 (2567)
+.|+|++||||||+.+.++.
T Consensus 8 i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998874
No 430
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=77.50 E-value=1.6 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
.-|+++|++|+||||+++.|...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998654
No 431
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=77.46 E-value=1.1 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~ 387 (2567)
-|+++|++|+||||+++.|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999998875
No 432
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=77.41 E-value=1 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.6
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeE
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLC 28 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~ 28 (2567)
..||.|+|||...+.|++.+|.++
T Consensus 6 l~G~~GsGKsT~~~~L~~~l~~~~ 29 (173)
T 3kb2_A 6 LEGPDCCFKSTVAAKLSKELKYPI 29 (173)
T ss_dssp EECSSSSSHHHHHHHHHHHHCCCE
T ss_pred EECCCCCCHHHHHHHHHHHhCCee
Confidence 369999999999999999999664
No 433
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=77.32 E-value=1.3 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
..-+.++||+||||||++++|..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 45689999999999999998865
No 434
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=77.31 E-value=1.1 Score=48.43 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.2
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999988864
No 435
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=77.24 E-value=0.9 Score=57.27 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
..-+.|+||+||||||++++|+.-+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998864
No 436
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=77.21 E-value=21 Score=34.97 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2326 IAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAE 2405 (2567)
Q Consensus 2326 ~A~~~Y~~V~~~V~Pk~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~ 2405 (2567)
+|.-+-..|-.- ++.+|.++++.|..++++-+.....+-.+.+.|.+-+.+-.+..++.++|+.++.....+|.-|.
T Consensus 11 rAq~ECrNvT~l---Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 11 RAQAECRNTTHL---LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 56778888888888888887777777777777777777766666677777777777777776665
No 437
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=77.20 E-value=1 Score=56.49 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
..-++|+||+|+||||++++|..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHhc
Confidence 34689999999999999998864
No 438
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.14 E-value=1.6 Score=50.60 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHH
Q psy12680 334 KAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYR 383 (2567)
Q Consensus 334 ~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~ 383 (2567)
..+.+.+.+.|+..-..+..+++.. +...+.+++++|||||||.++-
T Consensus 23 ~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~lv~~pTGsGKT~~~~ 69 (224)
T 1qde_A 23 ENLLRGVFGYGFEEPSAIQQRAIMP---IIEGHDVLAQAQSGTGKTGTFS 69 (224)
T ss_dssp HHHHHHHHHHTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHH---HhcCCCEEEECCCCCcHHHHHH
Confidence 4455566677875544455555543 2334669999999999998753
No 439
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=77.11 E-value=2.2 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
+-++|.||||||||+++..+...+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998875
No 440
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.87 E-value=1.5 Score=55.86 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-++|+|||||||||..+.|...+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 36899999999999999988765
No 441
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=76.79 E-value=1.2 Score=48.36 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=19.2
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999888764
No 442
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=76.78 E-value=1 Score=54.96 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
+.-|.|.||+||||||+.+.|++.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999875
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=76.67 E-value=1.2 Score=54.29 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=39.3
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHH
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLS 70 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLS 70 (2567)
..||+|+|||.....||+.+| +.++||+.- ++++|+--+-+--.-+|.+.++...++
T Consensus 15 i~GptgsGKt~la~~La~~~~--~~iis~Ds~-------qvY~~~~igTakp~~~E~~~v~hhlid 71 (316)
T 3foz_A 15 LMGPTASGKTALAIELRKILP--VELISVDSA-------LIYKGMDIGTAKPNAEELLAAPHRLLD 71 (316)
T ss_dssp EECCTTSCHHHHHHHHHHHSC--EEEEECCTT-------TTBTTCCTTTTCCCHHHHHHSCEETSS
T ss_pred EECCCccCHHHHHHHHHHhCC--CcEEecccc-------cccccccccCCCCCHHHHcCCCEEEec
Confidence 369999999999999999987 567788753 345566555555555555544444443
No 444
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=76.67 E-value=6.1 Score=49.74 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHcCCccC---------hHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHHHHHH
Q psy12680 329 YTILNKAVREVCEKANLQVT---------PFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 329 ~~~l~~ai~~~~~~~~l~~~---------~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
...+.+.+...+++.|+.+. ..-++.+++....+.-..-|+++|.||+||||.++.|....
T Consensus 115 ~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 115 HDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHhhh
Confidence 44566666666777776311 12244444444333345679999999999999999998764
No 445
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.66 E-value=1.2 Score=50.93 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=18.9
Q ss_pred cEEEEcCCCCChHHHHHHHHH
Q psy12680 1807 GFMIVGLSFAGKTCAYRMLSE 1827 (2567)
Q Consensus 1807 ~~lLVG~~GSGK~sl~rlla~ 1827 (2567)
-+.|+|++||||||+.+++..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999874
No 446
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.62 E-value=1.2 Score=50.31 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy12680 1808 FMIVGLSFAGKTCAYRMLS 1826 (2567)
Q Consensus 1808 ~lLVG~~GSGK~sl~rlla 1826 (2567)
+.|+|++||||||+.|.++
T Consensus 12 i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
No 447
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=76.52 E-value=1.8 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
+.||++.||||+|||...+.|+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhh
Confidence 568999999999999998888775
No 448
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=76.48 E-value=1.2 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.3
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEE
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCI 29 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~ 29 (2567)
..||+|+|||+..+.||+.+|.+++
T Consensus 9 i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 9 FIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 4699999999999999999997654
No 449
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.27 E-value=1 Score=59.33 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCeEEecCCCCCccceeehhhhhh
Q psy12680 772 ALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFI 805 (2567)
Q Consensus 772 ~ll~ll~~~~~pvll~G~~GtGKT~~i~~~~~~~ 805 (2567)
..+++.+..|..++++||+||||||+++.+....
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4466778899999999999999999997665533
No 450
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=76.24 E-value=1.2 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
..-|+++|++|+||||+++.|..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998865
No 451
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=76.23 E-value=3.1 Score=46.95 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCCCCCCCchhHHHHHHHHh---cCeEEEEeCCCCccHHHHHHhhhhhhh
Q psy12680 5 PEGPAGTGKTETTKDLAKAV---AKLCIVFNCSDSMDYIGLGKFFKGLIA 51 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~l---G~~~~vfNCs~~~d~~~m~rif~Gl~q 51 (2567)
..||.|+|||+.++.|++.+ |..++...-- .....|..+..+..
T Consensus 5 l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~---~~~~~g~~~~~~~~ 51 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP---GGTETGEKIRKILL 51 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHCCC-EEEEESS---CSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCC---CCCcHHHHHHHHHH
Confidence 36999999999999999999 9998765432 22345666655544
No 452
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=76.14 E-value=1.2 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~ 387 (2567)
-|+|+|++|+||||+++.|..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999865
No 453
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=76.04 E-value=1.2 Score=54.13 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~ 387 (2567)
-|.|+|++||||||+.+.|++
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999983
No 454
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=76.00 E-value=1.3 Score=50.02 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
+.-|+++|++|+||||+++.|..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999988764
No 455
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=75.98 E-value=1.3 Score=48.92 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.5
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999998864
No 456
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=75.92 E-value=30 Score=35.60 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2102 DKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESA 2141 (2567)
Q Consensus 2102 ~ea~~~V~~l~~~L~~~qp~L~~~~~~~~~~~~~le~~~~ 2141 (2567)
.||..+++.|+.++..++.+|+....+..++...+.....
T Consensus 2 ~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E 41 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSE 41 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999988888888887777766666665544443
No 457
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=75.88 E-value=1.3 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.3
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999998864
No 458
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=75.86 E-value=1.3 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=19.3
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999988764
No 459
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=75.74 E-value=0.75 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~A 388 (2567)
-|.|+|++|+||||+++.|...
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999987643
No 460
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=75.69 E-value=1.2 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.4
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998864
No 461
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.60 E-value=1.3 Score=48.18 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.2
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999988764
No 462
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=75.60 E-value=1.3 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.3
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
--|+++|++|+||||+++.|..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999998864
No 463
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=75.58 E-value=1.8 Score=51.27 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 334 KAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 334 ~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
..+.+.+++.|+..-..+..+++.. +...+.+++++|||||||.++-.
T Consensus 52 ~~l~~~l~~~g~~~~~~~Q~~~i~~---i~~~~~~lv~a~TGsGKT~~~~~ 99 (249)
T 3ber_A 52 DVLCEACDQLGWTKPTKIQIEAIPL---ALQGRDIIGLAETGSGKTGAFAL 99 (249)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHH---HhCCCCEEEEcCCCCCchhHhHH
Confidence 3455666778885544555555543 33457799999999999988644
No 464
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=75.53 E-value=1.5 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHHH
Q psy12680 1808 FMIVGLSFAGKTCAYRMLSEALQ 1830 (2567)
Q Consensus 1808 ~lLVG~~GSGK~sl~rlla~~l~ 1830 (2567)
+.|+|++||||||++++++..+.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999986553
No 465
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=75.51 E-value=2 Score=57.41 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCCCchhHHHHHHH---HhcCeEEEEeCCC----------CccHHHHHHhhhhhh----------hcCcccccccccc
Q psy12680 7 GPAGTGKTETTKDLAK---AVAKLCIVFNCSD----------SMDYIGLGKFFKGLI----------ATGAWACFDEFNR 63 (2567)
Q Consensus 7 GPaGTGKTEtvK~Lak---~lG~~~~vfNCs~----------~~d~~~m~rif~Gl~----------q~GaW~CFDEfNr 63 (2567)
||||||||.|++.+++ ..|..|++...+. +.+...+.+++.... ...-....||+..
T Consensus 211 G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasm 290 (574)
T 3e1s_A 211 GGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSM 290 (574)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGG
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEEcCccC
Q ss_pred CCchhHHHHHHHHHhhhhhhhcCCceEEEcC
Q psy12680 64 IDVEVLSVVAQQILTIQRGVTLGEEEILFEG 94 (2567)
Q Consensus 64 i~~~vLSvvaqqi~~Iq~a~~~~~~~~~f~g 94 (2567)
++.. ++..+..++..+..-+.+.+
T Consensus 291 l~~~-------~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 291 MGDA-------LMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp CCHH-------HHHHHHTTSCTTCEEEEEEC
T ss_pred CCHH-------HHHHHHHhCcCCCEEEEEec
No 466
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=75.50 E-value=1.6 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHH
Q psy12680 1807 GFMIVGLSFAGKTCAYRMLSEALQ 1830 (2567)
Q Consensus 1807 ~~lLVG~~GSGK~sl~rlla~~l~ 1830 (2567)
.+.|+|++||||||+.|+++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 368999999999999999986653
No 467
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=75.42 E-value=1.2 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.5
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEE
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCI 29 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~ 29 (2567)
..|+.|+|||+..+.||+.||.+++
T Consensus 12 l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3699999999999999999998765
No 468
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=75.40 E-value=1.3 Score=48.40 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.2
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999988764
No 469
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=75.35 E-value=1.4 Score=48.00 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.5
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999998875
No 470
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.28 E-value=2.1 Score=50.11 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=34.6
Q ss_pred CCCCCCCCchhHHHHHHHH--h-------cCeEEEEeCCCCccHHHHHHhhhh
Q psy12680 5 PEGPAGTGKTETTKDLAKA--V-------AKLCIVFNCSDSMDYIGLGKFFKG 48 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~--l-------G~~~~vfNCs~~~d~~~m~rif~G 48 (2567)
..||+|+|||.+++.|+.. + +..|+.|+..+.++...+.++...
T Consensus 29 i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (243)
T 1n0w_A 29 MFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 81 (243)
T ss_dssp EECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999984 4 678888988887776666555443
No 471
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=75.27 E-value=1.3 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
+.-|+++|++|+||||+++.|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 34689999999999999988764
No 472
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=75.14 E-value=1.4 Score=48.75 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
..-|+++|++|+||||+++.|..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999988764
No 473
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=74.75 E-value=2.3 Score=52.18 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHH
Q psy12680 334 KAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRML 385 (2567)
Q Consensus 334 ~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L 385 (2567)
..|.+.+++.|+..-.++..+++.. +...+.+++++|||||||.++-..
T Consensus 3 ~~i~~~l~~~g~~~l~~~Q~~~i~~---i~~~~~~lv~~~TGsGKT~~~~~~ 51 (337)
T 2z0m_A 3 EKIEQAIREMGFKNFTEVQSKTIPL---MLQGKNVVVRAKTGSGKTAAYAIP 51 (337)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHH---HhcCCCEEEEcCCCCcHHHHHHHH
Confidence 3456667778887655566666653 334567999999999999886443
No 474
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=74.70 E-value=2.6 Score=46.92 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=19.0
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEE
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCI 29 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~ 29 (2567)
..|+.|+|||+..+.|++.+|.+++
T Consensus 10 l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 10 INGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EECCC----CHHHHHHHHHSTTCEE
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3699999999999999999999876
No 475
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=74.66 E-value=2 Score=50.05 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCccChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHH
Q psy12680 333 NKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRM 384 (2567)
Q Consensus 333 ~~ai~~~~~~~~l~~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~ 384 (2567)
...+.+.+.+.|+..-..+..+++.. +.....+++++|||||||.++-.
T Consensus 32 ~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~l~~a~TGsGKT~~~~l 80 (230)
T 2oxc_A 32 SRPVLEGLRAAGFERPSPVQLKAIPL---GRCGLDLIVQAKSGTGKTCVFST 80 (230)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSSHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCCcHHHHHHH
Confidence 34556666778887333444455443 33356799999999999988643
No 476
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=74.63 E-value=1.3 Score=48.22 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=17.9
Q ss_pred EEEEEccCCCChhHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLS 386 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~ 386 (2567)
-|+++|++|+||||+++.|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999998875
No 477
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=74.62 E-value=1.3 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEE
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCI 29 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~ 29 (2567)
..||.|+|||+..|.||+.+|.+++
T Consensus 30 l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 30 LTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 4699999999999999999998764
No 478
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=74.61 E-value=1.4 Score=48.45 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.4
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4689999999999999988764
No 479
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=74.56 E-value=0.63 Score=54.67 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.1
Q ss_pred EEEccCCCChhHHHHHHHHHH
Q psy12680 369 MIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 369 mlvGp~gsGKSt~~~~L~~Al 389 (2567)
.|+||+||||||++++++-++
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhccc
Confidence 478999999999999998886
No 480
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=74.43 E-value=1.4 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
.-|+++|++|+||||+++.|...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999888653
No 481
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=74.37 E-value=1.5 Score=50.07 Aligned_cols=20 Identities=45% Similarity=0.474 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q psy12680 1808 FMIVGLSFAGKTCAYRMLSE 1827 (2567)
Q Consensus 1808 ~lLVG~~GSGK~sl~rlla~ 1827 (2567)
+.|+|++||||||+.++++.
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 67899999999999999874
No 482
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=74.37 E-value=2 Score=55.38 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=26.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccCCccEEEEEeccC
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPK 411 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~~~~v~~~~inPK 411 (2567)
.++++|+||||||+.++.+...+- . . ...+.+++||
T Consensus 55 h~~i~G~tGsGKs~~~~~li~~~~--~----~---g~~viv~Dpk 90 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAYTGL--L----R---GDRMVIVDPN 90 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHH--H----T---TCEEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--H----C---CCcEEEEeCC
Confidence 458899999999999877766542 1 1 2346778998
No 483
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=74.37 E-value=1.4 Score=56.57 Aligned_cols=21 Identities=33% Similarity=0.279 Sum_probs=18.6
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~ 387 (2567)
-|+|+||+|+||||++++|..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 359999999999999998865
No 484
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=74.24 E-value=1.4 Score=48.07 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=18.1
Q ss_pred EEEEEccCCCChhHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLS 386 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~ 386 (2567)
-|+++|++|+||||+++.|.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999999885
No 485
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.11 E-value=1.5 Score=48.51 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEE
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCI 29 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~ 29 (2567)
..||.|+|||+..+.|++.||.+++
T Consensus 7 l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 7 MVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3699999999999999999998754
No 486
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=74.09 E-value=1.5 Score=47.68 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
+.-|+++|++|+||||+++.|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999988865
No 487
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=74.03 E-value=68 Score=34.98 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHhhcchhHHHHHHHHHH
Q psy12680 2369 VQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVA 2444 (2567)
Q Consensus 2369 l~~~l~~L~~~~~~~~~ek~~L~~~~~~~~~rl~rA~~Li~~L~~Ek~RW~~~~~~l~~~~~~l~GD~llaaa~is 2444 (2567)
+.++++.++.+.+++....+.-...++.++.-+..|.+-+..+..-+.-|........+...-+-=|=+-+++|++
T Consensus 83 lrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrqiwqaE~kre~E~qEElEqEEf~s~~~~~ 158 (169)
T 3k29_A 83 VAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQLLHQL 158 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5566666777777777777777778888888888899999999444444999999999988888778777777764
No 488
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=74.00 E-value=2.5 Score=48.73 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCc-cChHHHHHHHHHHHHHHhceEEEEEccCCCChhHHHHHH
Q psy12680 334 KAVREVCEKANLQ-VTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRML 385 (2567)
Q Consensus 334 ~ai~~~~~~~~l~-~~~~~i~Kv~QLye~~~~rhGvmlvGp~gsGKSt~~~~L 385 (2567)
..+.+.+.+.|+. +.+.+ .+++.. +...+.+++.+|||||||.++-..
T Consensus 23 ~~l~~~l~~~g~~~~~~~Q-~~~i~~---~~~~~~~li~~~TGsGKT~~~~~~ 71 (220)
T 1t6n_A 23 PELLRAIVDCGFEHPSEVQ-HECIPQ---AILGMDVLCQAKSGMGKTAVFVLA 71 (220)
T ss_dssp HHHHHHHHHTTCCCCCHHH-HHHHHH---HHTTCCEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHH-HHHHHH---HhCCCCEEEECCCCCchhhhhhHH
Confidence 4445555667887 55544 444432 222456999999999999876443
No 489
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.89 E-value=1.7 Score=50.11 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQ 390 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~ 390 (2567)
-.+|+||.||||||++..+.-++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999988873
No 490
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=73.88 E-value=1.1 Score=57.54 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHH
Q psy12680 368 FMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 368 vmlvGp~gsGKSt~~~~L~~ 387 (2567)
|+|+|+|||||||+.+.|++
T Consensus 261 Iil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHH
No 491
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=73.85 E-value=26 Score=37.72 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12680 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQD 2392 (2567)
Q Consensus 2341 k~~~l~~ae~~l~~a~~~L~~~~~~l~~l~~~l~~L~~~~~~~~~ek~~L~~ 2392 (2567)
++.++..++.++......+.++.+.++.+.+.+..|+-++..+..+...|+.
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444334344444444444444444444444443333333333
No 492
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=73.78 E-value=1.4 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=19.3
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
.-|+++|++|+||||+++.|..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999998864
No 493
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=73.73 E-value=1.6 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
-+.|+||+||||||+++.+.-|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999998886
No 494
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=73.72 E-value=2 Score=54.28 Aligned_cols=82 Identities=22% Similarity=0.254 Sum_probs=53.0
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCCccHHHHHHhhhhhhhcCccccccccccCCchhHHHH--------H---
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDVEVLSVV--------A--- 73 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~~d~~~m~rif~Gl~q~GaW~CFDEfNri~~~vLSvv--------a--- 73 (2567)
..||+|+|||...+.||+.++- .++||+.- ++++|+..+-+---.+|-+.++...++++ +
T Consensus 7 i~GptgsGKttla~~La~~~~~--~iis~Ds~-------QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~ 77 (409)
T 3eph_A 7 IAGTTGVGKSQLSIQLAQKFNG--EVINSDSM-------QVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFE 77 (409)
T ss_dssp EEECSSSSHHHHHHHHHHHHTE--EEEECCTT-------TTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHH
T ss_pred EECcchhhHHHHHHHHHHHCCC--eEeecCcc-------ceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHH
Confidence 4699999999999999999984 46787652 45666666666666677776666544432 1
Q ss_pred -HHHHhhhhhhhcCCceEEEcCe
Q psy12680 74 -QQILTIQRGVTLGEEEILFEGT 95 (2567)
Q Consensus 74 -qqi~~Iq~a~~~~~~~~~f~g~ 95 (2567)
.-...|......+...+.-.|+
T Consensus 78 ~~a~~~i~~i~~~g~~pilVGGT 100 (409)
T 3eph_A 78 TECMNAIEDIHRRGKIPIVVGGT 100 (409)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSC
T ss_pred HHHHHHHHHHHhcCCCEEEECCh
Confidence 1233444444555555555554
No 495
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=73.67 E-value=1.9 Score=51.56 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=45.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHHHHHhcccC-CccEEEEEeccCCCCcCcccccccCCCCCCCcchHHHHHHHHHhcC
Q psy12680 367 GFMIVGLSFAGKTCAYRMLSEALQLIEEWGELG-EHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQ 445 (2567)
Q Consensus 367 GvmlvGp~gsGKSt~~~~L~~Al~~l~~~~~~~-~~~v~~~~inPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~ 445 (2567)
-|.|+|+|||||||+++.|...-.....+.... ......+.++.+.+..-++=|.++.....-.+..-..+.|.+....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~ 82 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDL 82 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhC
Confidence 478999999999999998854311000000000 0111222334444445555555443322111122223445554444
Q ss_pred CCCceEEEeCCCC
Q psy12680 446 NENRKWLIFDGPV 458 (2567)
Q Consensus 446 ~~~~~WivfDGpV 458 (2567)
..+--.+|+|..-
T Consensus 83 ~~d~vi~VvDas~ 95 (256)
T 3iby_A 83 EYDCIINVIDACH 95 (256)
T ss_dssp CCSEEEEEEEGGG
T ss_pred CCCEEEEEeeCCC
Confidence 5666788999865
No 496
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.65 E-value=1.5 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHHH
Q psy12680 365 RWGFMIVGLSFAGKTCAYRMLSEA 388 (2567)
Q Consensus 365 rhGvmlvGp~gsGKSt~~~~L~~A 388 (2567)
..-|+++|++|+||||+++.|...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999987653
No 497
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=73.53 E-value=1.6 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.4
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSE 387 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~ 387 (2567)
--|+|+|++|+||||+++.|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999988765
No 498
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=73.48 E-value=1.6 Score=54.08 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCCCCCCCchhHHHHHHHHhcCeEEEEeCCCC
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKLCIVFNCSDS 36 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~~~vfNCs~~ 36 (2567)
..||+|+|||+..+.||+.+| +.+++++.-
T Consensus 12 I~GptgSGKTtla~~La~~l~--~~iis~Ds~ 41 (340)
T 3d3q_A 12 IVGPTASGKTELSIEVAKKFN--GEIISGDSM 41 (340)
T ss_dssp EECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred EECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence 479999999999999999999 678888764
No 499
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=73.44 E-value=1.6 Score=55.19 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy12680 366 WGFMIVGLSFAGKTCAYRMLSEAL 389 (2567)
Q Consensus 366 hGvmlvGp~gsGKSt~~~~L~~Al 389 (2567)
.-|+|+|||||||||+...|++.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 357899999999999999999876
No 500
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=73.41 E-value=1.6 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.0
Q ss_pred CCCCCCCCchhHHHHHHHHhcCe
Q psy12680 5 PEGPAGTGKTETTKDLAKAVAKL 27 (2567)
Q Consensus 5 p~GPaGTGKTEtvK~Lak~lG~~ 27 (2567)
..||.|+|||+..+.||..+|.+
T Consensus 9 l~G~~GsGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 9 LVGPMGAGKSTIGRQLAQQLNME 31 (173)
T ss_dssp EECCTTSCHHHHHHHHHHHTTCE
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 46999999999999999999964
Done!