RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12680
(2567 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 525 bits (1355), Expect = e-151
Identities = 88/550 (16%), Positives = 196/550 (35%), Gaps = 101/550 (18%)
Query: 312 MGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIV 371
S +F P + + + +++ +++ ++ FL+K Q Y M + ++V
Sbjct: 871 KDELSKIFDSAGTPL-NSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILV 929
Query: 372 GLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSD 431
G + GKT ++ + +A+ + + H + VI+ K +T LYG + EW D
Sbjct: 930 GKAGCGKTATWKTVIDAMAIFDG------HANVVYVIDTKVLTKESLYGSMLKATLEWRD 983
Query: 432 GILAVSYRQFAMS----QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALA 487
G+ R+ +R W++FD +D ++E MNSVLDDNK L L +GE + +
Sbjct: 984 GLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIP 1043
Query: 488 PTTSLIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNTLPPKVSRCGMIYMEP 547
P ++FE +L+ +PAT++RCG+++ +D LN +
Sbjct: 1044 PNFRILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSYEALD--------- 1094
Query: 548 ATLGWECLVDSWLNTLPPKVQEGHRDSLRQLIMRFCPTILYFLRRTPFARMVDDAMEAYK 607
N L + +D + T ++
Sbjct: 1095 -------------NKLSMFELDKLKDLISDSFDMASLTNIFTCSNDL------------- 1128
Query: 608 KKKREEWEMFPTQDSNLIRSLLNLFDTFLDDFNDEKYYETHPSLDIRSQLEGIFFFSCIW 667
+ + N + + + L + + +++ ++ + + S ++
Sbjct: 1129 ------VHILGVRTFNKLETAVQLAVHLISSYRQ--WFQNLDDKSLKDVITLLIKRSLLY 1180
Query: 668 SMGACLTFETKPHFSNLLYGLMEKEFPASLRESLGLPVELCQPPAKPYLFTVPPQGTVYD 727
++ T E++ F + + + + Y
Sbjct: 1181 ALAGDSTGESQRAFIQTINTYFGHD---------------------------SQELSDYS 1213
Query: 728 YRFIKEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFI 787
I K + + ++ S ++ I++ T +T+++ + L+ ++ ++
Sbjct: 1214 TIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILC 1273
Query: 788 GPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDI 847
GP G+GK+ + + L + + +NFS T+
Sbjct: 1274 GPPGSGKTMIM-----------------NNALRNS---SLYDVVGINFSKDTTTEHILSA 1313
Query: 848 IMSKLDKRRK 857
+ +
Sbjct: 1314 LHRHTNYVTT 1323
Score = 408 bits (1051), Expect = e-114
Identities = 82/423 (19%), Positives = 173/423 (40%), Gaps = 53/423 (12%)
Query: 1283 YYAEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGP 1342
A K + + ++ S ++ I++ T +T+++ + L+ ++ ++ GP
Sbjct: 1216 VIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGP 1275
Query: 1343 TGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIM 1402
G+GK+ + + L + + +NFS T+ +
Sbjct: 1276 PGSGKTMIM-----------------NNALRNS---SLYDVVGINFSKDTTTEHILSALH 1315
Query: 1403 SKLDK--RRKGVYGPPLG--KRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRK 1458
+ KG+ P K V+F D++N+P +++G+Q + LRQ ++ ++
Sbjct: 1316 RHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTP 1375
Query: 1459 DVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWHL 1516
+ V + I ++ A PP+ ++ RF+RH + + ++ I+
Sbjct: 1376 ENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIF 1435
Query: 1517 DTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLSVPE 1576
EF E +A++H++ E T +SHYLF+ R+ R+++GV ++
Sbjct: 1436 ---KLVPEFRSYTEPFARASVHLYNEC-KARYSTGLQSHYLFSPRELTRLVRGVYTAINT 1491
Query: 1577 AI-ESLLSMKRLWVHEVLRVYYDRLVDSDDRLWLFNTLKYTVEKFLQEDMNQLFANLKEA 1635
++L S+ RLW +E R++ DRLV ++ L TV+K+L
Sbjct: 1492 GPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYL-------------- 1537
Query: 1636 NSTEPVGEYELRNLIYCDFANPKADQRNYMEVTNLEDLRTIVERYLTEFNNMSKKPMNLV 1695
+ +G +L++ + + EV DL +E F + + + +V
Sbjct: 1538 -PNQDLGNISSTSLLFSGLLSLD-----FKEVNK-TDLVNFIEERFKTFCD-EELEVPMV 1589
Query: 1696 LFR 1698
+
Sbjct: 1590 IHE 1592
Score = 292 bits (749), Expect = 3e-79
Identities = 53/190 (27%), Positives = 98/190 (51%), Gaps = 10/190 (5%)
Query: 1768 DYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSE 1827
+ + + +++ +++ ++ FL+K Q Y M + ++VG + GKT ++ + +
Sbjct: 886 NSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVID 945
Query: 1828 ALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMS--- 1884
A+ + + H + VI+ K +T LYG + EW DG+ R+
Sbjct: 946 AMAIFDG------HANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITG 999
Query: 1885 -QNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVAS 1943
+R W++FD +D ++E MNSVLDDNK L L +GE + + P ++FE +L+ +
Sbjct: 1000 TFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTT 1059
Query: 1944 PATITDESMV 1953
PATIT ++
Sbjct: 1060 PATITRCGLL 1069
Score = 281 bits (720), Expect = 9e-76
Identities = 69/144 (47%), Positives = 88/144 (61%)
Query: 1 MGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDE 60
GG GPAGTGKTET K + + ++ +VFNC DS DY L + G+ GAW CFDE
Sbjct: 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDE 705
Query: 61 FNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELP 120
FNR+D +VLS V+ I IQ G+ +G+ I L +VFIT+NPGY GRSELP
Sbjct: 706 FNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELP 765
Query: 121 DNLKSLFRTVAMMVPDYALISEII 144
+NLK FR +M P I+E+I
Sbjct: 766 ENLKKSFREFSMKSPQSGTIAEMI 789
Score = 210 bits (536), Expect = 3e-54
Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 11/213 (5%)
Query: 2350 EKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIG 2409
+ L+ + + K + + Q + L+ ++ +L L + L+
Sbjct: 1850 DGLRALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTL---------SISLVK 1900
Query: 2410 KLGGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTWVKEVAACN 2469
L EKERW +T K ++ +L G+ +I++ Y G R + + +
Sbjct: 1901 SLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKRLLGKFA 1960
Query: 2470 IVCTKDFQLGAVMGNPVEIRAWNIFGLPCDSFSIDNGIIIKNS-RRWPLMIDPQEQANKW 2528
+ +++ + E W GL + + ++N I+ NS P ++DP
Sbjct: 1961 VKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITV 2020
Query: 2529 IKNMEKANGLNVIRLSNTDYMRILEGAIGFGFP 2561
I N N ++ +++ LE AI FG
Sbjct: 2021 ISNYYG-NKTVLLSFLEEGFVKRLENAIRFGSV 2052
Score = 192 bits (490), Expect = 7e-49
Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 6/152 (3%)
Query: 891 EQWQPLIMNFSAQTSANQTQDIIMSKLDK--RRKGVYGPPLG--KRCVVFVDDVNMPLKE 946
+ + +NFS T+ + + KG+ P K V+F D++N+P +
Sbjct: 1292 SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLD 1351
Query: 947 EFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFN 1004
++G+Q + LRQ ++ ++ + V + I ++ A PP+ ++ RF+RH
Sbjct: 1352 KYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411
Query: 1005 QIVINKFDDDTMVTIFSKILLWHLDTRHESCK 1036
+ + ++ I+ E
Sbjct: 1412 ILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRS 1443
Score = 157 bits (399), Expect = 3e-38
Identities = 36/299 (12%), Positives = 93/299 (31%), Gaps = 70/299 (23%)
Query: 1905 NMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATITDESMVEDLSNLLNSGE 1964
N++ KK + + T +I E I + + +E ++ LL + +
Sbjct: 1647 NLSDFDMILKKAISDCS--LKESRTCLIIDESN---------ILETAFLERMNTLLANAD 1695
Query: 1965 VPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTMMALFKFFVD----------------- 2007
+P++F +E ++ + R + T+ L+ +FV
Sbjct: 1696 IPDLFQGEEYDKLLNNLRNKTRSLGLLLDTE---QELYDWFVGEIAKNLHVVFTICDPTN 1752
Query: 2008 ---------------------TPWPPDALLAVATRFLNEVELSEAE--------RQISID 2038
W + VA ++ + + + + +
Sbjct: 1753 NKSSAMISSPALFNRCIINWMGDWDTKTMSQVANNMVDVIPMEFTDFIVPEVNKELVFTE 1812
Query: 2039 MCQNFHVSTQNLSDEF-----LVKTSRHVYVTPTSYLELISTFKQLLKVKQEEVLNGKNR 2093
Q + N+ F +P +++ + +L+ K +++ +
Sbjct: 1813 PIQTIRDAVVNILIHFDRNFYQKMKVGVNPRSPGYFIDGLRALVKLVTAKYQDLQENQRF 1872
Query: 2094 YTVGLEKLDKAASQIAVMREEIEYLQPFLMVSA-----ANIKELMVTVEKESAEAAIVA 2147
VGLEKL+++ ++ + + + + K+ T ++ I +
Sbjct: 1873 VNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISS 1931
Score = 129 bits (327), Expect = 9e-30
Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 30/196 (15%)
Query: 1168 KMVDDAMEAYKKKKR-EEWVMDWPGQTVLCVGSAYWTADVHKAIANHPKGLSHYRDVCNA 1226
D + K E V + Q +L WT V K + + S Y +
Sbjct: 477 TQFRDCLGQIKDGTDIEVVVSKYIFQAILLSAQVMWTELVEKCLQTN--QFSKYWKEVDM 534
Query: 1227 QINKIVEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVSVPVSDENDFQWLCQLRYYAE 1286
+I +++ + K + + AL+V +H +V+ L + +E W ++Y
Sbjct: 535 KIKGLLDKLN-KSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFY-- 591
Query: 1287 GKGRWKPWSDDLASAPAIPRD----------MPVNQIIVTTEETLR-NIALMKLLVTHQK 1335
K + D ++ I + + + + ++ T L L L HQK
Sbjct: 592 ----QKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSL--HQK 645
Query: 1336 ----PVMFIGPTGTGK 1347
GP GTGK
Sbjct: 646 YGGCFF---GPAGTGK 658
Score = 121 bits (304), Expect = 4e-27
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 1036 KGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIV 1095
K S +F P + + + +++ +++ ++ FL+K Q Y M + ++V
Sbjct: 871 KDELSKIFDSAGTPL-NSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILV 929
Query: 1096 GLSFAGKTCAYRMLSEALQLIEE 1118
G + GKT ++ + +A+ + +
Sbjct: 930 GKAGCGKTATWKTVIDAMAIFDG 952
Score = 107 bits (269), Expect = 4e-23
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 1106 YRMLSEALQLIEEWSNQGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGK 1165
+ L+++L GG GPAGTGKTET K + + ++ +VFNC DS DY L +
Sbjct: 635 FATLTDSLHQ-----KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSR 689
Query: 1166 FFK 1168
Sbjct: 690 LLV 692
Score = 68.3 bits (167), Expect = 3e-11
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 24/130 (18%)
Query: 1697 FRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQYLTVTGRVG 1756
EF E +A++H++ E T +SHYLF+ R+ R+++ + G
Sbjct: 1434 IFKLVPEFRSYTEPFARASVHLYNECK-ARYSTGLQSHYLFSPRELTRLVRGVYTAINTG 1492
Query: 1757 PGPPENSF-----------------SKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIY 1799
P S + + + E +K + + I
Sbjct: 1493 PRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDK------YLPNQDLGNIS 1546
Query: 1800 EMMIVRWGFM 1809
++ G +
Sbjct: 1547 STSLLFSGLL 1556
Score = 54.1 bits (130), Expect = 7e-07
Identities = 30/204 (14%), Positives = 57/204 (27%), Gaps = 36/204 (17%)
Query: 7 GPAGTGKTETTKD-LAKAVAKLCIVFNCS-------------DSMDYI--GLGKFFKGLI 50
GP G+GKT + L + + N S +Y+ G
Sbjct: 1274 GPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS 1333
Query: 51 ATGAWACF-DEFNRIDVEVLSVVAQQILTIQRG-VTLGEEEILFEGTILKLDRTCSVFIT 108
F DE N ++ +Q ++ R + E + ++R V
Sbjct: 1334 DIKNLVLFCDEINLPKLDKYG--SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGAC 1391
Query: 109 MNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIVKKLAPYKQLYDNCIEYQEKHKMW 168
P GR + + + + P +S+I Y+ Y + + + +
Sbjct: 1392 NPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQI-------YEIYYKAIFKLVPEFRSY 1444
Query: 169 AESIVGTFDPEQIEEETNEFYKNI 192
E + Y
Sbjct: 1445 TEPFARA---------SVHLYNEC 1459
Score = 44.1 bits (104), Expect = 8e-04
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 275 EIWKDIMKTVAADPRVMSVVEIPKLKENLQKCNGLLDM 312
+K I + V+ IP L+ L M
Sbjct: 337 SEYKMITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKM 374
Score = 39.8 bits (93), Expect = 0.017
Identities = 13/143 (9%), Positives = 39/143 (27%), Gaps = 14/143 (9%)
Query: 163 EKHKMWAESIVGTFDPEQIEEETNEFYKNIYKLKLQFSHLPGPYGIASKVLDQVQEFKEH 222
+KH M + +E + + ++ + +F
Sbjct: 76 DKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIA-----------YSKDFETLKVDFLSK 124
Query: 223 MPIIQTLGNPGLQLRHWEKISEVVGFPLSPEMEDFTLQRIFNYGLEEYVPKFEIWKDIMK 282
+P + + L + + V + + + + PK +K ++
Sbjct: 125 LPEMLKMFEDRLCHKTYLNGDHVTHPDFMLY-DALDVVLYMDPMCLDAFPKLVCFKKRIE 183
Query: 283 TVAADPRVMSVVEIPKLKENLQK 305
+ + + + + LQ
Sbjct: 184 AIPQIDKYLKSSKY--IAWPLQG 204
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 478 bits (1231), Expect = e-136
Identities = 122/590 (20%), Positives = 242/590 (41%), Gaps = 72/590 (12%)
Query: 289 RVMSVVEIPKL-KENLQKCNGLLDMGITSDLFPGIELPETDYTILNKAVREVCEKANLQV 347
++ IPKL +++ L + D+FPG +L L K ++E+ ++ +L
Sbjct: 834 NSINDTMIPKLVADDIP-----LIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVT 888
Query: 348 TPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIV 407
++EKI Q+++++ + G M+VG S GKT ++ + EA++ ++ K E V
Sbjct: 889 KQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIE------QVDNIKSEAHV 942
Query: 408 INPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFA---MSQNENRKWLIFDGPVDAIWIE 464
++PK+IT QL+G D + EW+DG+ + R+ ++ R W+IFDG VD W+E
Sbjct: 943 MDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVE 1002
Query: 465 NMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYMEPATLGWEC 524
N+NS+LDDNK L L +GE +AL ++FE QDL+ A+ AT+SRCGM++ L +
Sbjct: 1003 NLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQM 1062
Query: 525 LVDSWLNTLPP-----------KVSRCGMIYMEPATLGWECLVDSWLNTLPPKVQEGHRD 573
+ ++L+TL K + + + T ++ S T
Sbjct: 1063 IFQNYLDTLSNEPFDPQEKEQQKRNENAQLQQQQQTTITSPILTSPPTTSSSSRSTTSTT 1122
Query: 574 SLRQLIMRFCPTILYFLRRTPFARMVDDAMEAYKKKKREEWEMFPTQDSNLIRSLLNLFD 633
S+ ++ + + + + ++ + + N SL+N
Sbjct: 1123 SMIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIMDFTRLRVLNSFFSLMNRSI 1182
Query: 634 TFLDDFNDEKYYETHPSLDIRSQLEGIFFFSCIWSMGACLTFETKPHFSNLLYGLMEKEF 693
+ ++N + + + +S +W +G + + +FS + +
Sbjct: 1183 VNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAITPV 1242
Query: 694 PASLRESLGLPVELCQPPAKPYLFTVPPQGTVYDYRFIKEGKGRWKPWSDDLASAPAIPR 753
P + DY + W W + + S
Sbjct: 1243 P-------------------------ANTIPLLDYSVSID-DANWSLWKNKVPSVEVETH 1276
Query: 754 DMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRS 813
+ +++ T +T R++ ++ ++ +P++ GP G+GK+ +
Sbjct: 1277 KVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTL--------------- 1321
Query: 814 GFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTI 863
L ++ + +NFS+ T+ + +R T+
Sbjct: 1322 --TSTLRA---FPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV 1366
Score = 414 bits (1065), Expect = e-116
Identities = 85/424 (20%), Positives = 170/424 (40%), Gaps = 55/424 (12%)
Query: 1283 YYAEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGP 1342
+ W W + + S + +++ T +T R++ ++ ++ +P++ GP
Sbjct: 1253 SVSIDDANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGP 1312
Query: 1343 TGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIM 1402
G+GK+ + L ++ + +NFS+ T+
Sbjct: 1313 PGSGKTMTL-----------------TSTLRA---FPDFEVVSLNFSSATTPELLLKTFD 1352
Query: 1403 SKLDKRR----KGVYGPP-LGKRCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDR 1457
+ +R + V P LGK VVF D++N+P +++G Q I +RQ ++ ++
Sbjct: 1353 HHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRT 1412
Query: 1458 KDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLWH 1515
D +KL +IQ + A PP+ +T RF RH ++++ ++ I+
Sbjct: 1413 SDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRAL 1472
Query: 1516 LDTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQGVLLSVP 1575
+ + L A + + ES P ++HY+++ R+ +R + +L ++
Sbjct: 1473 MK---LLPNLRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQ 1528
Query: 1576 EAI-ESLLSMKRLWVHEVLRVYYDRLVDSDDRLWLFNTLKYTVEKFLQEDMNQLFANLKE 1634
+L + RLW HE LR++ DRLV+++++ W + K
Sbjct: 1529 TMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNL-------- 1580
Query: 1635 ANSTEPVGEYELRNLIYCDFANPKADQRNYMEVTNLEDLRTIVERYLTEFNNMSKKPMNL 1694
+ R ++Y ++ N DLR V+ L F + + L
Sbjct: 1581 --------DALKRPILYSNWLTKDYQPVNR------SDLREYVKARLKVFYE-EELDVPL 1625
Query: 1695 VLFR 1698
VLF
Sbjct: 1626 VLFN 1629
Score = 297 bits (763), Expect = 1e-80
Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 1/294 (0%)
Query: 2268 KKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIA 2327
+ L + N + +++ + + ++D V+ E + V A
Sbjct: 1940 QVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKA 1999
Query: 2328 ICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKEL 2387
+K A+ GP +E + Q E E +++ + + +E
Sbjct: 2000 YADLEK-AEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058
Query: 2388 KDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDVLIAAGVVAYLG 2447
+ ++ E K R+ L+ L E+ RW ++ N + + GDV++A+ +AY+G
Sbjct: 2059 EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIG 2118
Query: 2448 PFTVAFRQQQVSTWVKEVAACNIVCTKDFQLGAVMGNPVEIRAWNIFGLPCDSFSIDNGI 2507
F FR + W+ + + I D + + + P E W+ LP D I+N I
Sbjct: 2119 FFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAI 2178
Query: 2508 IIKNSRRWPLMIDPQEQANKWIKNMEKANGLNVIRLSNTDYMRILEGAIGFGFP 2561
++K R+PL+IDP QA +++ N + ++ +M+ LE A+ FG P
Sbjct: 2179 MLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCP 2232
Score = 267 bits (683), Expect = 2e-71
Identities = 71/145 (48%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 1 MGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDE 60
MGG P GPAGTGKTET K L + + +VF C + D + + F GL GAW CFDE
Sbjct: 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDE 664
Query: 61 FNRIDVEVLSVVAQQILTIQRGVTLGEEEI-LFEGTILKLDRTCSVFITMNPGYAGRSEL 119
FNR++ +LS V+QQI TIQ + +E+ L G + L + +F+TMNPGYAGRS L
Sbjct: 665 FNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNL 724
Query: 120 PDNLKSLFRTVAMMVPDYALISEII 144
PDNLK LFR++AM+ PD +I++++
Sbjct: 725 PDNLKKLFRSMAMIKPDREMIAQVM 749
Score = 241 bits (616), Expect = 1e-63
Identities = 86/356 (24%), Positives = 157/356 (44%), Gaps = 23/356 (6%)
Query: 1763 SFSKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAY 1822
L K ++E+ ++ +L ++EKI Q+++++ + G M+VG S GKT ++
Sbjct: 864 QLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW 923
Query: 1823 RMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFA 1882
+ EA++ ++ K E V++PK+IT QL+G D + EW+DG+ + R+
Sbjct: 924 EVYLEAIE------QVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRII 977
Query: 1883 ---MSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDL 1939
++ R W+IFDG VD W+EN+NS+LDDNK L L +GE +AL ++FE QDL
Sbjct: 978 DNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDL 1037
Query: 1940 EVASPATITDESMVEDLSNLLNSGEVPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTMM 1999
+ A+ ATI+ MV +L + + + E + ++K Q
Sbjct: 1038 KYATLATISRCGMVWFSEEILTTQMIFQNYLDTLSNEPFD-------PQEKEQQKRNENA 1090
Query: 2000 ALFKFFVDTPWPPDALLAVATRFLNEVELSEAERQISIDMCQNF-------HVSTQNLSD 2052
L + T P T + S + Q + L
Sbjct: 1091 QLQQQQQTTITSPILTSPPTTSSSSRSTTSTTSMIPAGLKVQKECAAIISQYFEPGGLVH 1150
Query: 2053 EFLVKTSRHVYVTPTSYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQI 2108
+ L + ++ + L ++++F L+ V+ ++ + ++ I
Sbjct: 1151 KVLEDAGQRPHIMDFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYI 1206
Score = 235 bits (600), Expect = 1e-61
Identities = 64/441 (14%), Positives = 130/441 (29%), Gaps = 103/441 (23%)
Query: 1905 NMNSVLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATITDESMVEDLSNLLNSGE 1964
+ DD + L +G + E + + S +E ++ LL GE
Sbjct: 1684 KSSDFDDDLRMLLKRAG--CKEEKICFIFDESN---------VLESSFLERMNTLLAGGE 1732
Query: 1965 VPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTMMALFKFFVD----------------- 2007
VP +F +E + + ++ + L+K+F
Sbjct: 1733 VPGLFEGEEFTALMHACKETAQ---RNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASP 1789
Query: 2008 ---------------------TPWPPDALLAVATRFLNEVELSEAE-------------- 2032
W P+AL V + F ++L +
Sbjct: 1790 DFHNRSATSPALFNRCVLDWFGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIM 1849
Query: 2033 -----------RQISIDMCQNFHVSTQNLSDEFLVKTSRHVYVTPTSYLELISTFKQLLK 2081
R + H + + L + R YVTP YL+ I+ L+
Sbjct: 1850 GNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLIN 1909
Query: 2082 VKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESA 2141
K++++ + +GL+KL +Q+ ++ + L V + + + ++
Sbjct: 1910 EKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969
Query: 2142 EAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQALAAQAMKSECEEILSE 2201
A I + ++ + + + K A D E A +
Sbjct: 1970 AAEIKQKDARELQVQLDVRNKEIAVQKVKAY---ADLEKAEPTGPLREE----------- 2015
Query: 2202 AIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLVE 2261
+E E A N L +V T+ + + + L + +
Sbjct: 2016 ----VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQ--------IKT 2063
Query: 2262 DYWGPSKKLLGDIKFLEGLTN 2282
+ K+ I L+ L +
Sbjct: 2064 ESSKVKNKVDRSIALLDNLNS 2084
Score = 195 bits (498), Expect = 9e-50
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 888 LSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRR----KGVYGPP-LGKRCVVFVDDVNM 942
+ ++ + +NFS+ T+ + +R + V P LGK VVF D++N+
Sbjct: 1326 RAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINL 1385
Query: 943 PLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTG--NTVTPRFS 1000
P +++G Q I +RQ ++ ++ D +KL +IQ + A PP+ +T RF
Sbjct: 1386 PSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFL 1445
Query: 1001 RHFNQIVINKFDDDTMVTIFSKILLWHLD 1029
RH ++++ ++ I+ +
Sbjct: 1446 RHAPILLVDFPSTSSLTQIYGTFNRALMK 1474
Score = 135 bits (341), Expect = 2e-31
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 20/144 (13%)
Query: 1168 KMVDDAMEAYKK------KKREEWVMDWPGQTVLCVGSAYWTADVHKAIANH-------P 1214
++ ++++ + + K EWV ++P Q VL W+ V +A+
Sbjct: 420 TLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQ 479
Query: 1215 KGLSHYRDVCNAQINKIVEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVSVP-VSDEN 1273
+ L +N + + V L Q R L+ VH RDVV L ++
Sbjct: 480 EQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNK 539
Query: 1274 DFQWLCQLRYYAEGKGRWKPWSDD 1297
DF WL +RYY + ++
Sbjct: 540 DFDWLYHMRYY------YDATQEN 557
Score = 121 bits (305), Expect = 3e-27
Identities = 23/83 (27%), Positives = 49/83 (59%)
Query: 1036 KGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIV 1095
+ + D+FPG +L L K ++E+ ++ +L ++EKI Q+++++ + G M+V
Sbjct: 853 QSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMV 912
Query: 1096 GLSFAGKTCAYRMLSEALQLIEE 1118
G S GKT ++ + EA++ ++
Sbjct: 913 GPSGGGKTTSWEVYLEAIEQVDN 935
Score = 116 bits (292), Expect = 1e-25
Identities = 15/151 (9%), Positives = 49/151 (32%), Gaps = 10/151 (6%)
Query: 125 SLFRTVAMMVPDYALISEIIVKKLAPYKQLYDNCIEYQEKHKMWAESIVGTFDPEQIEEE 184
++ + +++ K ++ ++ E+ P ++ +
Sbjct: 12 GDYK---DDDDKGGGKVPVE-EEIQDLKAVWVELSNTWQEIDSLKETAWSAIIPRKVRKS 67
Query: 185 TNEFYKNIYKLKLQFSHLPGPYGIASKVLDQVQEFKEHMPIIQTLGNPGLQLRHWEKISE 244
+ + + L + Y + ++ + + II L + ++ RHW+ + +
Sbjct: 68 LEDTLQKLKNLPNRIR----QYSAFDHAQNLIKIYLKGNAIITDLHSEAIKDRHWKILKK 123
Query: 245 VVGFPLSPEMEDFTLQRIFNYGLEEYVPKFE 275
+ + TL I++ L +
Sbjct: 124 RLNTNWII--TELTLGSIWDSDLARNENIYR 152
Score = 98.0 bits (244), Expect = 4e-20
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 1106 YRMLSEALQLIEEWSNQGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGK 1165
Y L++AL+ GG P GPAGTGKTET K L + + +VF C + D + +
Sbjct: 594 YLTLTQALES-----RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSR 648
Query: 1166 FFK 1168
F
Sbjct: 649 IFV 651
Score = 61.5 bits (149), Expect = 5e-09
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 1697 FRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQ 1747
+ L A + + ES P ++HY+++ R+ +R +
Sbjct: 1472 LMKLLPNLRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDR 1521
Score = 44.5 bits (105), Expect = 6e-04
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 275 EIWKDIMKTVAADPRVMSVVEIPKLKENLQKCNGLLDM 312
+ I+K V+ P ++ V+ I ++++ +++ + LL
Sbjct: 278 SEFIAILKKVSGAPLILEVLAIERIQQTMERLSDLLGK 315
Score = 40.3 bits (94), Expect = 0.010
Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 32/188 (17%)
Query: 7 GPAGTGKTETTKDLAKAVAK-LCIVFNCS-------------DSMDYI--GLGKFFKGLI 50
GP G+GKT T +A + N S +Y G+
Sbjct: 1311 GPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPT 1370
Query: 51 ATGAWACF--DEFNRIDVEVLSVVAQQILTIQRGVTLGEEEILF---EGTILKLDRTCSV 105
G W DE N + Q+++T R + E+ + + T +KLD+ V
Sbjct: 1371 QLGKWLVVFCDEINLPSTDKYG--TQRVITFIR--QMVEKGGFWRTSDHTWIKLDKIQFV 1426
Query: 106 FITMNPGYAGRSELPDNLKSLFRTVAMMVPDYALISEIIVKKLAPYKQLYDNCIEYQEKH 165
P AGR +L + + P + +++I Y ++
Sbjct: 1427 GACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQI-------YGTFNRALMKLLPNL 1479
Query: 166 KMWAESIV 173
+ +A+++
Sbjct: 1480 RSFADNLT 1487
Score = 30.6 bits (69), Expect = 8.7
Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 24/156 (15%)
Query: 2275 KFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKY--D 2332
+F L N + V + + + P + + V++ Y
Sbjct: 1824 EFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDA----------VVSSLVYIHQ 1873
Query: 2333 KVAKIVGPKKEALRQAE--------EKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKK 2384
+ + + + + + + ++EK++Q Q L L +
Sbjct: 1874 TIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTE 1933
Query: 2385 KELKDLQDELDLC----VKKKQRAEDLIGKLGGEKE 2416
++KDLQ L K ++A + ++ +++
Sbjct: 1934 AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD,
antiparallel coil, motor protein, DSH; NMR {Chlamydomonas
reinhardtii}
Length = 155
Score = 226 bits (579), Expect = 1e-68
Identities = 79/155 (50%), Positives = 108/155 (69%), Gaps = 2/155 (1%)
Query: 2195 CEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPD 2254
+ L+EA+P+LEAA AL+TL DIT VK MKSPP V+ V++A+CI+KGVK RV D
Sbjct: 2 SQADLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKD 61
Query: 2255 -AGGQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKK 2313
A G++V+DYW SKK+L + FL+ L F+KD++P VI ++ F +F P+V++K
Sbjct: 62 TASGRMVDDYWEASKKMLMEFDFLDSLRKFDKDHIPPEVIVKIR-PFAQDPEFQPKVIEK 120
Query: 2314 SSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQA 2348
S A GLC WVIA+ KYDKV K V PK++ LR+A
Sbjct: 121 QSVACAGLCSWVIALEKYDKVIKEVEPKRQKLREA 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 95.3 bits (236), Expect = 2e-19
Identities = 105/810 (12%), Positives = 232/810 (28%), Gaps = 281/810 (34%)
Query: 965 MWYDRKDVVAVKLIEI--QLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSK 1022
Y KD+++V C + ++ + I+++K D +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMSK-DAVSGT----L 65
Query: 1023 ILLWHLDTRHESCKGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQI 1082
L W L ++ E F E+ +Y L ++ + ++ T ++E+ ++
Sbjct: 66 RLFWTLLSKQEE----MVQKFVE-EVLRINYKFLMSPIKTEQRQPSMM-TRMYIEQRDRL 119
Query: 1083 YEMMIVRWGFMIVGLSFAGKTCAYRM-----LSEALQLIEEWSNQGGAPEGPAGTGKTET 1137
Y FA K R+ L +AL + + +G G+GKT
Sbjct: 120 YN----------DNQVFA-KYNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSGKTW- 165
Query: 1138 TKDLAKAVA---KLCIVFNCSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMDWPGQTV 1194
+A V K+ + + ++ L E V++ Q
Sbjct: 166 ---VALDVCLSYKVQCKMD--FKIFWLNLKN--------------CNSPETVLE-MLQK- 204
Query: 1195 LCVGSAYWTADVHKAIANHPKGLSHYRDVCNAQINKIVEIVRGKLPPQTRITLGALVVID 1254
L + + S+ + ++ ++ +++ K L+V+
Sbjct: 205 LLY-------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN------CLLVLL 251
Query: 1255 VHARDVVVHLVSVPVSDENDFQWLCQLRYYAEGKGRWKPWSDDLASAPAIPRDMPVN-QI 1313
+V ++ +I
Sbjct: 252 ----NV------------------------------QNAK---------AWNAFNLSCKI 268
Query: 1314 IVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLL 1373
++TT R + L + +I++ +
Sbjct: 269 LLTT----RFKQVTDFL-------------SAATTTHISLD--------HHSMTLTPDEV 303
Query: 1374 KELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLK 1433
K L + ++ ++ Q + P +++
Sbjct: 304 KSL-LLKY----LDCRPQDLPREVLTTN--------------PRR---------LSI--- 332
Query: 1434 EEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPR-FSRHFN 1492
+R L W + K V KL I N + P + + F+
Sbjct: 333 --IAES-----IRDGLATWDNW--KHVNCDKLTTIIESSL-------NVLEPAEYRKMFD 376
Query: 1493 QIVINKFDDDTMVTIFSKIL--LWHLDTRGFSKEFDPCIEQLVQATLHIFKESLLNLLPT 1550
++ + F I + +L +W + D +V LH K SL+ P
Sbjct: 377 RLSV--FPPS--AHIPTILLSLIW-----FDVIKSDV---MVVVNKLH--KYSLVEKQPK 422
Query: 1551 PTKSHYLFNLRDFARVIQGVLLSVPEAIESLLSMKRLWVHEVLRVYY---------DRLV 1601
+ I + L + +E+ ++ H + +Y D +
Sbjct: 423 ESTIS-----------IPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIP 466
Query: 1602 DSDDRLWLFNTLKYTVEKFLQEDMNQLFANLKEANSTEPVGEYELRNLIYCDFANPKADQ 1661
D+ + ++ + + +LK E L +++ DF
Sbjct: 467 PYLDQYF-YSHIGH---------------HLKNIEHPE---RMTLFRMVFLDF------- 500
Query: 1662 RNYMEVTNLEDLRTIVERYLTEFNNMSKKPMNLVL----FRGFSKEFDPCIEQLVQATLH 1717
++E + I R+ + N S +N + ++ + + DP E+LV
Sbjct: 501 -RFLE-------QKI--RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV----- 545
Query: 1718 IFKESLLNLLPTPTKSHYLFNLRDFARVIQ 1747
++L+ LP L + +++
Sbjct: 546 ---NAILDFLPKI--EENLIC-SKYTDLLR 569
Score = 74.1 bits (181), Expect = 6e-13
Identities = 92/646 (14%), Positives = 170/646 (26%), Gaps = 224/646 (34%)
Query: 161 YQEKHKMWAESIVGTFDPEQIEEE-----TNEFYKNIYKLKLQFSHLPGPYGIASKVLDQ 215
Y++ ++ ++ V FD + +++ + E +I K + G + +L +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK---DAVSGTLRLFWTLLSK 74
Query: 216 ----VQEFKEHMPIIQTLGNPGLQLRH---WEKISEVVGFPLSPEMEDFTLQRIFNYGLE 268
VQ+F E L++ + I P S + QR Y
Sbjct: 75 QEEMVQKFVEE----------VLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDN 123
Query: 269 EYVPKFEIWKDIMKTVAADPRVMSVVEIPKLKENLQKCNGLLDMGITSDLFPGIELPETD 328
+ K+ + R + L++ LL EL
Sbjct: 124 QVFAKYNV-----------SR-------LQPYLKLRQA--LL------------ELRPAK 151
Query: 329 YTILN------KAV--REVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTC 380
+++ K +VC +Q F +I+ W L+
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-----KIF------W------LNL-KNCN 193
Query: 381 AYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQ 440
+ + E LQ +L Q D SD + R
Sbjct: 194 SPETVLEMLQ--------------------------KLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 441 FAMSQNENRKWLIFDGPVDAIWIENMNS--VLDD--NKKL-------C--LMSGEIIALA 487
++ R N VL + N K C L+
Sbjct: 228 HSIQAELRRLLKSKPYE---------NCLLVLLNVQNAKAWNAFNLSCKILL-------- 270
Query: 488 PTTSLIFEPQDLEVASPATVSRCGMIYMEPATLGW-----ECLVDSWLNT----LPPKVS 538
TT + +V + + I ++ ++ + L+ +L+ LP +V
Sbjct: 271 -TT------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 539 R-----CGMIYMEPATL-GWECLVDSWLNTLPPKVQEGHRDSLRQLIMRFCPTIL--YFL 590
+I ++ D+W + K+ SL L P F
Sbjct: 324 TTNPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFD 376
Query: 591 RRTPFARMVDDA------MEAYKKKKREEWEMFPTQDSNLI------RSLLNLFDTFLDD 638
R + A + W D ++ SL+
Sbjct: 377 R---LSVFPPSAHIPTILLSLI-------WFDVIKSDVMVVVNKLHKYSLVEK------Q 420
Query: 639 FNDEKYY------ETHPSLDIRSQLEGIFFFSCIWSMGACLTFETKPHFSNLLYGLMEKE 692
+ E L+ L P+ Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY------ 474
Query: 693 FPASLRESLGLPVELCQPPAKPYLFTVPPQGTVY-DYRFIKEGKGR 737
+G ++ + P + LF V+ D+RF+ E K R
Sbjct: 475 ------SHIGHHLKNIEHPERMTLFR-----MVFLDFRFL-EQKIR 508
Score = 65.6 bits (159), Expect = 2e-10
Identities = 99/696 (14%), Positives = 187/696 (26%), Gaps = 208/696 (29%)
Query: 1499 FDDDTMVTIFSKILLWHLDTRGFSKEFDPC--IEQLVQATL------HIFKESLLNLLPT 1550
F+ + IL D F FD C ++ + ++ L HI
Sbjct: 9 FETGEHQYQYKDILSVFEDA--FVDNFD-CKDVQDMPKSILSKEEIDHIIMS------KD 59
Query: 1551 P-TKSHYLFNLRDFARVIQGVLLSVPEAI-----ESLLSMKRLWVHEVLRVYY------- 1597
+ + LF LLS E + E +L + ++ ++
Sbjct: 60 AVSGTLRLF----------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 1598 DRLVDSDDRLWLFNTL--KYTVEKFLQEDMNQLFANLKEANSTEPVGEY----------- 1644
++ DRL+ N + KY V + + +L L E + V
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 1645 --ELRNL-IYCDFANPKADQRNYMEVTNLEDLRTIVERYLTEFNNMSKKPMNLVLFRGFS 1701
+ + C ++ + N T++E M L
Sbjct: 168 LDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVLE-------------MLQKLLYQID 210
Query: 1702 KEFDPCIEQLVQATLHI--FKESLLNLLPTPTKSHYLFNLRDF--ARVIQYLTVTGRVGP 1757
+ + L I + L LL + + L L + A+ ++
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS----- 265
Query: 1758 GPPENSFSKTDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAG 1817
K T K QVT F +
Sbjct: 266 -------CKILLTTRFK-----------QVTDFLSAATTTHISLDHHSMTLT-------- 299
Query: 1818 KTCAYRMLSEALQLIEEWGELGEHKV--EIIVINPKSITM-GQLYGQFDAVSHEWS---- 1870
E L+ ++ + + E++ NP+ +++ + A W
Sbjct: 300 -------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 1871 ---DGILAVSYRQFAMSQNENRKWL----IFDGPVDAIWIENMNSVLDDNKKLCLMSGEI 1923
I+ S E RK +F P A I L L+ ++
Sbjct: 353 DKLTTIIESSLNVL--EPAEYRKMFDRLSVF--PPSA-HIPT--------ILLSLIWFDV 399
Query: 1924 IALAPTTSLIFEPQDLEVASPATITDESMVEDLSN--LLNSGEVPNIFASDEKAEICEKM 1981
I +V L L+ +
Sbjct: 400 I---------------------KSDVMVVVNKLHKYSLVEKQPKESTI------------ 426
Query: 1982 GVIDRQKDKSMQTDGTMMALFKFFVDT-----PWPPDALLAVATR--FLNEV--ELSEAE 2032
+ + ++ + AL + VD + D L+ F + + L E
Sbjct: 427 SIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 2033 RQISIDMCQNFHVSTQNLSDEFLVKTSRHVYVTPTSYLELISTFKQLLKVKQ-------- 2084
+ + + L FL + RH + +++T +QL K
Sbjct: 486 HPERMTLFRMVF-----LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 2085 -EEVLNGKNRYTVGLEK---LDKAAS--QIAVMREE 2114
E ++N + +E+ K +IA+M E+
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Score = 63.3 bits (153), Expect = 1e-09
Identities = 94/650 (14%), Positives = 175/650 (26%), Gaps = 222/650 (34%)
Query: 813 SGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENN 872
+G + K++ + ++ F QD+ S L KEEI I+ + +
Sbjct: 11 TGEHQYQYKDI-LSVFED---AFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSG 63
Query: 873 NSRL--------RSGFQHF-----------LLKELSIEQWQPLIM--NFSAQTSANQTQD 911
RL Q F L+ + EQ QP +M + Q +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 912 IIMSKLDKRRK-------------------GVYGPP-LGKRCVVFVDDVNMPLKEEFGAQ 951
+ +K + R + G GK V +++ L + +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA----LDVCLSYKVQCK 179
Query: 952 PPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMC-------------AMGPPSTGNTVTPR 998
+I W+ + L +Q + + +++
Sbjct: 180 MDFKI------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 999 FSRHF----------------NQIVINKFDDDTMVTIFSKILLWHLDTRHESCKGITSDL 1042
R N N F+ + KIL L TR K +T L
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFN------LSCKIL---LTTRF---KQVTDFL 281
Query: 1043 -------------FPGIELPETDYTILNKAV--------REVCEKANLQVTPFFLEKIQQ 1081
+ E ++L K + REV P L I +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVL-----TTNPRRLSIIAE 335
Query: 1082 IYEMMIVRWGF----------MIVGLSFAG------KTCAYRMLS----------EALQL 1115
+ W I+ S + + LS L L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSL 394
Query: 1116 IEEWSNQGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDY----IGLGKFFKMVD 1171
I W + + + K +V I L K+ +
Sbjct: 395 I--WFD-----------VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 1172 DA------MEAYKKKKREEWVMDWPGQTVLCVGSAYWTADVHKAIANHPKGLSHYRDVCN 1225
+ ++ Y K D + Y+ + I +H K + H +
Sbjct: 442 EYALHRSIVDHYNIPKT----FDSDDLIPPYL-DQYF----YSHIGHHLKNIEHPERM-- 490
Query: 1226 AQINKI---VEIVRGKLPPQTRITLGALVVIDVHARDVVVHLVSVPVSDENDFQWLCQLR 1282
+ + K+ R A + S N Q QL+
Sbjct: 491 TLFRMVFLDFRFLEQKI----RHDSTAW---------------NASGSILNTLQ---QLK 528
Query: 1283 YY----AEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEET-LRNIALM 1327
+Y + +++ + + +P+ + + ++ ++ T L IALM
Sbjct: 529 FYKPYICDNDPKYERLVNAILD--FLPK---IEENLICSKYTDLLRIALM 573
Score = 62.2 bits (150), Expect = 2e-09
Identities = 84/605 (13%), Positives = 170/605 (28%), Gaps = 198/605 (32%)
Query: 567 VQEGHRDS-LRQLIMRFCPTILYFLRRTPFARMVDDAMEA-YKKKKREEWEMFPTQDSNL 624
+ S +L L + + V++ + Y ++ M P +
Sbjct: 55 IMSKDAVSGTLRLF-----WTLLSKQEEMVQKFVEEVLRINY------KFLMSPIKTEQR 103
Query: 625 IRSLL-NLFDTFLDD-FND----EKYYET--HPSLDIRSQLE--------------GI-- 660
S++ ++ D +ND KY + P L +R L G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 661 ----------------FFFSCIW-SMGACLTFETKPHFSNLLYGLMEKEFPASLRESLGL 703
F W ++ C + ET L ++ + + S +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 704 PVELCQPPAKPYLFTVPPQGTVYDYRFIKEGKGRWKPWS----DDLASAPAIPRDMPVN- 758
+ + + L R +K + ++ +A A ++
Sbjct: 224 KLRIHS--IQAEL-----------RRLLKS---KPYENCLLVLLNVQNAKAW-NAFNLSC 266
Query: 759 QIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHF 818
+I++TT R + L + +I++
Sbjct: 267 KILLTT----RFKQVTDFL-------------SAATTTHISLD--------HHSMTLTPD 301
Query: 819 LLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSRLRS 878
+K L + ++ ++ Q + + +S I + +R
Sbjct: 302 EVKSL-LLKY----LDCRPQDLPREVLTT--NPR------RLSIIAE---------SIRD 339
Query: 879 GFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLD----KRRKGVYGPPLGKRCV 934
G + + W+ + ++ II S L+ + ++ R
Sbjct: 340 GLATW-------DNWK--------HVNCDKLTTIIESSLNVLEPAEYRKMF-----DRLS 379
Query: 935 VFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPST--- 991
VF ++P + ++ W D + VV KL + L+ ST
Sbjct: 380 VFPPSAHIPTIL-------LSLI--WFD--VIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 992 -------GNTVTPRFSRHFNQIV-----INKFDDDTMVT------IFSKILLWHLDTRHE 1033
+ ++ H IV FD D ++ +S I HL
Sbjct: 429 PSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GHHLKNIEH 486
Query: 1034 SCKGITSDLFPGIELPETDYTILNKAVREVCEKAN--------LQVTPFFLEKIQQ---I 1082
+ LF + L D+ L + +R N LQ F+ I
Sbjct: 487 PER---MTLFRMVFL---DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 1083 YEMMI 1087
YE ++
Sbjct: 541 YERLV 545
Score = 62.2 bits (150), Expect = 2e-09
Identities = 87/701 (12%), Positives = 189/701 (26%), Gaps = 226/701 (32%)
Query: 253 EMEDFTLQRIFNYGLEEYVPKFEIW--KDIMKTVAADPRVMSVVEIPKLKENLQKCNGLL 310
E + + I + + +V F+ +D+ K++ + + ++ + L
Sbjct: 13 EH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 311 DMGITS--DLFPGIELPETDYTILNKAVREVCEKANLQ-----------------VTPFF 351
F E+ +Y L ++ + ++ +
Sbjct: 72 LSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 352 LEKIQQIYEM----MIVRWGFMIV--GLSFAGKTCAYRMLSEALQ--LIEE-------WG 396
+ ++Q ++ + +R ++ G+ +GKT + + ++ W
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWL 187
Query: 397 ELGE-HKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQNENRKWLIFD 455
L + E ++ + +L Q D SD + R ++ R
Sbjct: 188 NLKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 456 GPVDAIWIENMNS--VLDD--NKKL-------C--LMSGEIIALAPTTSLIFEPQDLEVA 502
N VL + N K C L+ TT + +V
Sbjct: 243 YE---------NCLLVLLNVQNAKAWNAFNLSCKILL---------TT------RFKQVT 278
Query: 503 SPATVSRCGMIYMEPATLGWECLVDSWLNTLPPKVSRCGMIYMEPATLGWECLVDSWLNT 562
+ + I ++ ++ L+ +L+
Sbjct: 279 DFLSAATTTHISLDHHSMTLT----------------------PDEVKS---LLLKYLDC 313
Query: 563 ----LPPKVQEGHRDSLRQLIMRFCPTILYFLRRTPFARMVDDAMEAYKKKKREEWEMFP 618
LP +V + P L + A + D W+ +
Sbjct: 314 RPQDLPREVLTTN------------PRRL-----SIIAESIRD--------GLATWDNWK 348
Query: 619 TQDSNLIRSLLNLFDTFLDDFNDEKYYET----HPSLDIRSQLEGIFFFSCIWSMGACLT 674
+ + + +++ L+ K ++ PS I + L S IW +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-----LSLIWFD---VI 400
Query: 675 FETKPHFSNLL--YGLMEKEFPASLRESLGLPVEL-CQPPAKPYLFTVPPQGTVYDYRFI 731
N L Y L+EK+ S + +EL + + L + V Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH----RSIVDHYNIP 456
Query: 732 K--EGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGP 789
K + P+ D
Sbjct: 457 KTFDSDDLIPPYLDQ--------------------------------------------- 471
Query: 790 TGTGKSCYITVSI---LFIKNNSRLRSGFQHFLLKELS-IEQWQPLIMNFSAQTSANQTQ 845
Y I L + + F+ L + +EQ + + +A ++
Sbjct: 472 -------YFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQ--KIRHDSTAWNASGSIL 521
Query: 846 DIIMSKLDKRRKEEISTIVDIGNEENNNSRLRSGFQHFLLK 886
+ + +L + I + + RL + FL K
Sbjct: 522 NTL-QQLKFYKPY-------ICDNDPKYERLVNAILDFLPK 554
Score = 59.9 bits (144), Expect = 1e-08
Identities = 83/671 (12%), Positives = 183/671 (27%), Gaps = 226/671 (33%)
Query: 59 DEFNRIDVEVLSVVAQQILTIQRGVTLGEE--EILFEGTILKLDRTCSVFITMNPGYAGR 116
D F + + + + + + + EE I+ + T +F T+
Sbjct: 27 DAFVD-NFDC-----KDVQDMPKSILSKEEIDHIIMSKD--AVSGTLRLFWTL------L 72
Query: 117 SELPDNLKSLFRTVAMMVPDYALISEIIVKKLAPYKQLYDNCIEYQEKH-KMWAESIVGT 175
S+ + + F ++ +Y + I + +Q Y E+ +++ ++ V
Sbjct: 73 SK-QEEMVQKF-VEEVLRINYKFLMSPIKTE---QRQPSMMTRMYIEQRDRLYNDNQV-- 125
Query: 176 FDPEQI--EEETNEFYKNIYKLKLQFSHLPGPY-------GI-----ASKVLDQVQEFKE 221
F + + + + + +L+ P G A V + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLS-YKVQC 178
Query: 222 HMP-----IIQTLGN---PGLQLRHWEKISEVVGFPLSPEMEDFTLQRIFNYGLEEYVPK 273
M + L N P L +K+ + + + + ++ + ++ + +
Sbjct: 179 KMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 274 FEIWKD------IMKTVAADPRVMSVVEIPKLKENLQKCNGLL---DMGITSDL------ 318
K ++ V + + + + C LL +T L
Sbjct: 237 LLKSKPYENCLLVLLNVQ-NAKAWNAFNL--------SCKILLTTRFKQVTDFLSAATTT 287
Query: 319 -------FPGIELPETDYTILNKAV--------REVCEKANLQVTPFFLEKIQQIYEMMI 363
+ E ++L K + REV P L I + +
Sbjct: 288 HISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVL-----TTNPRRLSIIAESIRDGL 341
Query: 364 VRWGF----------MIVGLSFAG------KTCAYRMLS----------EALQLIEEWGE 397
W I+ S + + LS L LI W +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLI--WFD 398
Query: 398 LGEHKVEIIV----------INPKSITMGQLYG-QFDAVSHEWSDGILAVSYRQFAMSQN 446
+ + V ++V PK T+ + + ++ L +R N
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYAL---HRSIVDHYN 454
Query: 447 ENRKWLIFDGPVDAIWIENMNSVLDDN---------KKLCLMSGEIIALAPTTSLIFEPQ 497
+ + D D K + +F
Sbjct: 455 IPKTFDSDDLIPPY----------LDQYFYSHIGHHLKNIEHPERM--------TLFR-- 494
Query: 498 DLEVASPATVSRCGMIYMEPATLGWECLVDSWLNTLPPKVSRCGMIYMEPATLGWECLVD 557
M++++ + L K+ + ++
Sbjct: 495 --------------MVFLD---FRF----------LEQKIRHDSTAWNASGSI------- 520
Query: 558 SWLNTLPP--------KVQEGHRDSLRQLIMRFCPTILYFLRRTPFARMVDDAM------ 603
LNTL + + L I+ F P I L + + ++ A+
Sbjct: 521 --LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 604 ---EAYKKKKR 611
EA+K+ +R
Sbjct: 579 IFEEAHKQVQR 589
Score = 57.6 bits (138), Expect = 7e-08
Identities = 74/537 (13%), Positives = 149/537 (27%), Gaps = 204/537 (37%)
Query: 6 EGPAGTGKT----------------------------ETTKDLAKAVAKLCIVFNC---- 33
+G G+GKT + + + + + KL +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 34 -SDSMDYI---------GLGKFFKG-------LIATGAW--ACFDEFN---RI-----DV 66
SD I L + K L+ ++ FN +I
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 67 EVLSVVAQQILT------IQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELP 120
+V ++ T +T E + L ++ P +LP
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----------LKYLDCRP-----QDLP 319
Query: 121 DNLKSLF-RTVAM---MVPDYAL------------ISEII---VKKLAP--YKQLYDNC- 158
+ + R +++ + D ++ II + L P Y++++D
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 159 -------IEYQEKHKMWAESIVGTFDPEQIEEETNEFYKNIYKLKLQFSHLPGPYGIASK 211
I +W + I D + N+ +K Y L ++ I
Sbjct: 380 VFPPSAHIPTILLSLIWFDVI--KSDVMVV---VNKLHK--YSL-VEKQPKESTISI--- 428
Query: 212 VLDQVQEFKEHMPIIQTLGNPGLQLRHWEKISEVVGFPLSPEMEDFTLQRIFNYGLEEYV 271
E K + L H I + P + + +D + Y
Sbjct: 429 -PSIYLELKVKLENEYAL--------H-RSIVDHYNIPKTFDSDDLIPPYLDQY------ 472
Query: 272 PKFEIWKDI---MKTVAADPRVMSVVEIPKLKENLQKCNGLLDMGITSDLFPGIELPETD 328
+ I +K + E+ ++ LF + L D
Sbjct: 473 ----FYSHIGHHLKNI----------------EHPER----------MTLFRMVFL---D 499
Query: 329 YTILNKAVREVCEKANLQVTPFFLEKIQQI--YEMMIVRWGFMIVGLSFAGKTCAY-RML 385
+ L + +R + L +QQ+ Y+ I Y R++
Sbjct: 500 FRFLEQKIRHDS--TAWNASGSILNTLQQLKFYKPYICD------------NDPKYERLV 545
Query: 386 SEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFA 442
+ L + K+E +I K + ++ A+ E + I +++Q
Sbjct: 546 NAILDFL--------PKIEENLICSKYTDLLRI-----ALMAE-DEAIFEEAHKQVQ 588
Score = 57.2 bits (137), Expect = 8e-08
Identities = 82/590 (13%), Positives = 160/590 (27%), Gaps = 214/590 (36%)
Query: 323 ELPETDYTILNKAVREVCEKA-----NLQVTPFFL------EKIQQIYEM--MIVRWGFM 369
E E Y K + V E A + + E+I I + +
Sbjct: 10 ETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 370 IVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEW 429
L + + + E L++ ++ L ++ P +T ++Y + +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKF--LMS-PIKTEQRQPSMMT--RMY--IEQRDRLY 120
Query: 430 SDGILAVSY---RQFAMSQNENRKWLIFDGPVDAIWIENM---------NSVLDDNKKLC 477
+D + Y R + R+ L+ P + I+ + V K C
Sbjct: 121 NDNQVFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 478 LMSGEIIALAPTTSLIFEPQDLEVASPATVSRCGMIYMEPATLGWECLVDSWLNTLPPKV 537
M + IF WLN +
Sbjct: 179 KMDFK----------IF----------------------------------WLN-----L 189
Query: 538 SRCGMIYMEPATLGWECLVDSWLNTLPPKVQEGHRDSLRQLIMRFCPTILYFLRRTPFAR 597
C P T+ E L P D + +R
Sbjct: 190 KNCN----SPETV-LEMLQKLLYQIDPNWTSRS--DHSSNIKLRI--------------- 227
Query: 598 MVDDAMEAYKKKKRE--EWEMFPTQDSNLIRSLLNLFDTFLDDFNDEKYYETHPSLDIRS 655
+ + + R + + + LL L + + K + + ++
Sbjct: 228 ------HSIQAELRRLLKSKPYE-------NCLL-----VLLNVQNAKAWN---AFNLSC 266
Query: 656 QL------EGIFFFSCIWSMGACLTFETKPHFS--NLLYGLMEKEFPASLRESLG----- 702
++ + + F L+ T H S + L E + L + L
Sbjct: 267 KILLTTRFKQVTDF---------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 703 LPVELCQPPAKPYLFTVPPQGTVYDYRFIKEGKGRWKPWSDDLASAPAIPRDMPVNQIIV 762
LP E+ P ++ I++G W W VN
Sbjct: 318 LPREVLT--TNPRRLSIIA-------ESIRDGLATWDNWKH-------------VNC--- 352
Query: 763 TTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKE 822
+ L I ++ + +P + + + +S+ F + H
Sbjct: 353 ---DKLTTI--IESSLNVLEPAEY-------RKMFDRLSV-FPPS--------AHIPTIL 391
Query: 823 LSIEQWQPLIMNFSAQTSANQTQDIIMSKL------DKRRKEEISTIVDI 866
LS+ W +I ++++KL +K+ KE +I I
Sbjct: 392 LSL-IWFDVI---------KSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Score = 54.9 bits (131), Expect = 4e-07
Identities = 95/672 (14%), Positives = 199/672 (29%), Gaps = 219/672 (32%)
Query: 1793 EKIQQIYEM--MIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINP 1850
E+I I + + L + + + E L++ ++ L ++ P
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF--LMS-PIKTEQRQP 105
Query: 1851 KSITMGQLYGQFDAVSHEWSDGILAVSY---RQFAMSQNENRKWLIFDGPVDAIWIENM- 1906
+T ++Y + ++D + Y R + R+ L+ P + I+ +
Sbjct: 106 SMMT--RMY--IEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVL 159
Query: 1907 --------NSVLDDNKKLCLMSGEI--IALAPTTSLIFEPQDLEVASPATITDESMVEDL 1956
V K C M +I + L S E+++E L
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-----------------PETVLEML 202
Query: 1957 SNLLNSGEVPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTMMALFKFFVDTPWPPDALL 2016
LL + PN + D + ++ L + P+ + LL
Sbjct: 203 QKLLYQID-PNWTSR------------SDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLL 248
Query: 2017 AVATRFLNEVELSEAERQISIDMCQNFHVSTQNLS--DEFLVKTSRHVYV-------TPT 2067
L V+ ++A ++ C+ ++T+ D T+ H+ + TP
Sbjct: 249 -----VLLNVQNAKAWNAFNLS-CKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 2068 SYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQI---------AVMREEIEYL 2118
L LLK L+ + + L + +R+ +
Sbjct: 302 EVKSL------LLK-----YLDCR------PQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 2119 QPFLMVSAANIKELMVTVEK-----ESAEA-------AIVAEGVKKDEEVANEQALAAQA 2166
+ V N +L +E E AE ++ +
Sbjct: 345 DNWKHV---NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----------IPTIL 391
Query: 2167 MKSV-AEGVKKD-EEVANE---QALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDI 2221
+ + + +K D V N+ +L + K +T++ I
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE--------------------STISIPSI 431
Query: 2222 TVVKTMKSPPDIV--KLVMKAVCILKGVKSERVPDAGGQLVEDYW-----------GPSK 2268
+ +K + + ++ I K S+ D ++ Y+ +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 2269 K------LLGDIKFLEGLTNFNK-------DNVPAAVIKRLEDEFLSREDFDPEVVKKSS 2315
+ + D +FLE K N +++ L+ + +
Sbjct: 489 RMTLFRMVFLDFRFLE-----QKIRHDSTAWNASGSILNTLQQ-LKFYKPY--------- 533
Query: 2316 TAAEGLCKWVIAICKYD-KVAKIVGPKKEALRQAEEKL---------QLAMSALHEKQEQ 2365
IC D K ++V + L + EE L ++A+ E
Sbjct: 534 ------------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM-----AED 576
Query: 2366 NRIVQEKLQKLQ 2377
I +E +++Q
Sbjct: 577 EAIFEEAHKQVQ 588
Score = 49.1 bits (116), Expect = 2e-05
Identities = 66/425 (15%), Positives = 120/425 (28%), Gaps = 133/425 (31%)
Query: 2194 ECEEILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVP 2253
+C+++ IL E + I + S + + +L K E +
Sbjct: 34 DCKDVQDMPKSILSKEEI-------DHI-----IMSKDAVSGTLRLFWTLLS--KQEEMV 79
Query: 2254 DA--GGQLVEDY-W----------GPSKKLLGDIKFLEGLTN----FNKDNVPAAVIKRL 2296
L +Y + PS I+ + L N F K NV RL
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RL 134
Query: 2297 ED-----EFLSREDFDPEVVKKSSTAAEGL--C-KWVIAICKYDKVAKIVGPKKEALRQA 2348
+ + L V+ +G+ K +A+ +
Sbjct: 135 QPYLKLRQALLELRPAKNVL------IDGVLGSGKTWVAL--------------DVCL-- 172
Query: 2349 EEKLQLAMS------ALHEKQEQNRIVQEKLQKLQNTLDAKKKELKD-----------LQ 2391
K+Q M L ++ E LQKL +D D +Q
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 2392 DELDLCVKKKQRAEDLIGKLGGEKERWSSTA--------KMLNEKYYQLTGDVLIAAGVV 2443
EL +K K L+ L ++ A K+L T + +
Sbjct: 232 AELRRLLKSKPYENCLL-VL---LNVQNAKAWNAFNLSCKIL-----LTTRFKQVTDFLS 282
Query: 2444 AY------LGPFTVAFRQQQVSTWVKEVAACNIVCTKDFQLGAVMGNPVEIRAWNIFGLP 2497
A L ++ + VK + + + L P E+ P
Sbjct: 283 AATTTHISLDHHSMTLTPDE----VKSLLL-KYLDCRPQDL------PREVLT----TNP 327
Query: 2498 CDSFSIDNGIIIKNSRRWPLMIDPQEQANKWIKNMEKANGLNVIRLSNTDYMRILEG-AI 2556
+ II ++ R D + N + ++ L +Y ++ + ++
Sbjct: 328 ---RRL--SIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 2557 GFGFP 2561
FP
Sbjct: 381 ---FP 382
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.5 bits (180), Expect = 1e-12
Identities = 106/610 (17%), Positives = 183/610 (30%), Gaps = 186/610 (30%)
Query: 1432 LKEEFGA--QPPIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSR 1489
L+E+F P E D + +L+ +F
Sbjct: 33 LQEQFNKILPEPTEGF--------AADDEPTTPAELVG------------------KFLG 66
Query: 1490 HFNQIVINKFDDDTMVTIFSKILLWHLDTRGFSKEFDPCIEQLVQATLHIFKESLLNLLP 1549
+ ++ + + V F ++L L F + L +H LL
Sbjct: 67 Y-----VSSLVEPSKVGQFDQVLNLCLTE--FENCY------LEGNDIHALAAKLLQEND 113
Query: 1550 TP-TKSHYLFNLRDF--ARVIQGVLLSVPEAIESLLSMK------RL------------W 1588
T K+ L ++++ AR++ + S L +L +
Sbjct: 114 TTLVKTKEL--IKNYITARIMAKR--PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 1589 VHEVLR-VY--YDRLVD-----SDDRLWLFNTLKYTVEKFLQEDMNQLFANLKEANSTEP 1640
E LR +Y Y LV S + L EK + +N + L+ ++T P
Sbjct: 170 FEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNT-P 226
Query: 1641 VGEYELRNLIYCDFANP--KADQ-RNYM---EVTNL--EDLRTIVERYLT---------- 1682
+Y L+ + P Q +Y+ ++ +LR+ ++
Sbjct: 227 DKDY----LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 1683 --------EFNNMSKKPMNLVLFRGF-SKEFDPCIEQLVQATLHIFKESLLNLLPTPTKS 1733
F +K + ++ F G E P I ++SL N P+
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS----LPPSILEDSLENNEGVPS-- 336
Query: 1734 HYLFNLRDFAR--VIQYLTVTGRVGP-------------------GPPENSFSKTDYTIL 1772
+ ++ + + V Y+ T P GPP+ L
Sbjct: 337 -PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ------SLYGL 389
Query: 1773 NKAVREVCEKANL-QV-TPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQ 1830
N +R+ + L Q PF K+ F+ V F L A
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKL-------KFSNRFLPVASPF---HSHL--LVPASD 437
Query: 1831 LIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQNENRK 1890
LI + +L ++ V N K I + +Y FD SD R + S +E
Sbjct: 438 LINK--DLVKNNVS---FNAKDIQI-PVYDTFD-----GSD------LRVLSGSISERIV 480
Query: 1891 WLIFDGPVDAIWIENMNS----VLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPAT 1946
I PV W +LD G L T + + V T
Sbjct: 481 DCIIRLPVK--WETTTQFKATHILD------FGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Query: 1947 ITDESMVEDL 1956
+ D + +D
Sbjct: 533 L-DINPDDDY 541
Score = 67.8 bits (165), Expect = 6e-11
Identities = 101/598 (16%), Positives = 181/598 (30%), Gaps = 188/598 (31%)
Query: 2017 AVATRFLNEVELSEAERQISIDMCQNFHVSTQNLSDEFLVKTSRHVYVT------PTSYL 2070
A +TR L LS + + + L ++F K PT+
Sbjct: 3 AYSTRPLT---LSHGSLEHVLLVPTASFFIASQLQEQFN-KILPEPTEGFAADDEPTTPA 58
Query: 2071 ELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMRE-EIEYLQP----FLMVS 2125
EL+ F + E + ++ L + E E YL+ L
Sbjct: 59 ELVGKFLGYVSSLVEP--SKVGQFDQVLN---------LCLTEFENCYLEGNDIHALAAK 107
Query: 2126 AANIKELMVTVEKESAEAAIVAEGV-KKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQ 2184
+ + KE + I A + K+ + + AL ++V EG +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FRAVGEGNAQ-------- 155
Query: 2185 ALAA----QAMKSEC-EEILSE--------AIPILEAAEAALNTLTSNDITVVKTMKSPP 2231
L A Q + EE L + +++ + L+ L + K
Sbjct: 156 -LVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 2232 DIVKLVMKAVCILKGVKSERVPDAG------------G--QLVEDYWGPSKKL---LGDI 2274
+I++ L+ PD G QL Y +K L G++
Sbjct: 214 NILEW-------LEN--PSNTPDKDYLLSIPISCPLIGVIQLAH-YVVTAKLLGFTPGEL 263
Query: 2275 -KFLEGLTNFNKDNVPAAVI--------------KRLEDEFL---------SREDFDPEV 2310
+L+G T ++ V A I K + F P +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 2311 VKKSSTAAEG---------------LCKWVIAICKY---DKVAKI---------V--GP- 2340
++ S EG + +V + K +I V GP
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 2341 -----------KKEA---LRQA-----EEKLQ-----LAMSA-LHEK--QEQNRIVQEKL 2373
K +A L Q+ E KL+ L +++ H + ++ + L
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 2374 QKLQNTLDAKKKELK----DLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKY 2429
K N + K+++ D D DL V +E ++ + +W +T +
Sbjct: 444 VK--NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF----- 496
Query: 2430 YQLTGDVLIAAGVVAYLGPFTVAFRQQQVSTWVKEVAACNIVCTKDFQLGAVMGNPVE 2487
+ T + G + LG T + T V+ + A G + NP +
Sbjct: 497 -KATHILDFGPGGASGLGVLTHRNKD---GTGVRVIVA-----------GTLDINPDD 539
Score = 65.1 bits (158), Expect = 3e-10
Identities = 100/586 (17%), Positives = 174/586 (29%), Gaps = 186/586 (31%)
Query: 15 ETTKDLA-----KAVAKLCIVFNCSDSMDYIG-------LGKFFKGLIATGAWACFDEFN 62
E T+ A A+L F + Y+ +G+F + L C EF
Sbjct: 43 EPTEGFAADDEPTTPAELVGKF-----LGYVSSLVEPSKVGQFDQVLNL-----CLTEFE 92
Query: 63 R-----IDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRS 117
D+ ++ A L +E + T++K + R
Sbjct: 93 NCYLEGNDIH--ALAA----------KLLQEN---DTTLVKTKELIKNY------ITARI 131
Query: 118 ELPDNLKS-----LFRTV-AMMVPDYAL-----ISEIIVKKLAPYKQLYDNCIEYQEKHK 166
LFR V A+ ++ ++L + LY Y
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL---RDLYQ---TYHVLVG 185
Query: 167 MWAESIVGTFDPE-QIEEETNEFYKNIYKLK--LQF-SHLPG-PYGIASKVLDQVQEFKE 221
+ T + + + + + L+ S+ P Y ++ +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI--------- 236
Query: 222 HMPIIQTLGNPGL-QLRHWEKISEVVGF-P------------------------LSPEME 255
P+I G+ QL H+ ++++GF P + E
Sbjct: 237 SCPLI------GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 256 DF------TLQRIFNYGLE--EYVPKFEIWKDIMKTVAAD----PRVM-SVVEIPK--LK 300
F + +F G+ E P + I++ + P M S+ + + ++
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 301 ENLQKCNGLLDMGITSDLFPGIEL------------PETDYTILNKAVREVCEKANL-QV 347
+ + K N L G + I L P++ Y LN +R+ + L Q
Sbjct: 351 DYVNKTNSHLPAG--KQVE--ISLVNGAKNLVVSGPPQSLYG-LNLTLRKAKAPSGLDQS 405
Query: 348 -TPFFLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEII 406
PF K+ F+ V F L A LI + +L ++ V
Sbjct: 406 RIPFSERKL-------KFSNRFLPVASPF---HSHL--LVPASDLINK--DLVKNNVS-- 449
Query: 407 VINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQFAMSQNENRKWLIFDGPVDAIWIENM 466
N K I + +Y FD SD R + S +E I PV W
Sbjct: 450 -FNAKDIQI-PVYDTFD-----GSD------LRVLSGSISERIVDCIIRLPVK--WETTT 494
Query: 467 NS----VLDDNKKLCLMSGEIIALAPTTSLIFEPQDLEVASPATVS 508
+LD G L T + + V T+
Sbjct: 495 QFKATHILD------FGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Score = 59.7 bits (144), Expect = 2e-08
Identities = 48/282 (17%), Positives = 97/282 (34%), Gaps = 80/282 (28%)
Query: 266 GLEEY----VPKFEIWKD------------IMKTVAADPRVMSVVEIP----KLKENLQK 305
G++ Y + ++W I+ V +P +++ +++EN
Sbjct: 1632 GMDLYKTSKAAQ-DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 306 --CNGLLDMGITSD-LFPGIELPETDYTILNKAVREVCEK-ANLQVTPFFLEKIQQIYEM 361
++D + ++ +F I T YT ++ + + Q +EK +E
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTF--RSEKGLLSATQFTQPALTLMEKA--AFED 1746
Query: 362 MIVRWGFMIVGLSFAG----------------------KTCAYRMLSEALQLIEEWGELG 399
+ G + +FAG + YR +Q+ ELG
Sbjct: 1747 LK-SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR--GMTMQVAVPRDELG 1803
Query: 400 EHKVEIIVINPKSITMG----QLYGQFDAVSHEWSDGIL-AVSY----RQFAMSQNENRK 450
+I INP + L + V + ++ V+Y +Q+ +
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKR-TGWLVEIVNYNVENQQYVAA------ 1856
Query: 451 WLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTSL 492
G + A ++ + +VL+ K L +II L + SL
Sbjct: 1857 -----GDLRA--LDTVTNVLNFIK---LQKIDIIELQKSLSL 1888
Score = 57.4 bits (138), Expect = 8e-08
Identities = 94/625 (15%), Positives = 179/625 (28%), Gaps = 246/625 (39%)
Query: 944 LKEEFGA---QP------------PIEILRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGP 988
L+E+F +P P E++ ++L + V+ L+E P
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY---------VS-SLVE--------P 74
Query: 989 PSTG------NTVTPRFSRHF---NQI--VINKF--DDDTMVTIFSKILLWHLDTRHESC 1035
G N F + N I + K ++DT + +++ ++ R +
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 1036 KGIT----SDLFPGIELPETDYTILNKAVREVCEKANL------Q--VTPFF--LEKIQQ 1081
+ S LF +AV E A L Q +F L + Q
Sbjct: 135 RPFDKKSNSALF--------------RAVGE--GNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 1082 IYEMMIVRWGFMIVGLSFAGKTC---------AYRMLSEALQLIEEW-SNQGGAPEGP-- 1129
Y +++ + F+ +T A ++ ++ L I EW N P+
Sbjct: 179 TYHVLVGDL------IKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYL 231
Query: 1130 ------------------------AG----------TGKTETTKDL--AKAVAKLCIVFN 1153
G G T ++ L A A+A+
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE------ 285
Query: 1154 CSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMDWPG-QTVLCVGSAYWTADVHKAIAN 1212
+DS + FF V A+ V+ + G + + + +
Sbjct: 286 -TDSWE-----SFFVSVRKAIT----------VLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 1213 HPKGLSHY----RDVCNAQINKIVEIVRGKLPPQTRITLGALV------VIDVHARD--- 1259
+ +G+ ++ Q+ V LP ++ + +LV V+ +
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYG 388
Query: 1260 VVVHLVSVPVSDENDFQWLCQLRYYAEGKGRWKPW-------------SDDLASA-PAIP 1305
+ + L D Q R R K S L A I
Sbjct: 389 LNLTLRKAKAPSGLD-----QSR--IPFSER-KLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 1306 RDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSR-L 1364
+D+ N + ++ +++ V T G + R L
Sbjct: 441 KDLVKNNVSFNAKD-------IQIPVYD---------TFDGS-------------DLRVL 471
Query: 1365 RSGFQHFLLKELSIEQ--WQPLIMNFSAQTSANQTQDII---------MSKLDKR-RKGV 1412
++ + W F A T I+ + L R + G
Sbjct: 472 SGSISERIVDCIIRLPVKW-ETTTQFKA-TH------ILDFGPGGASGLGVLTHRNKDG- 522
Query: 1413 YGPPLGKRCVVFVDDVNMPLKEEFG 1437
G R V+ +++ +++G
Sbjct: 523 ----TGVR-VIVAGTLDINPDDDYG 542
Score = 55.4 bits (133), Expect = 3e-07
Identities = 93/570 (16%), Positives = 178/570 (31%), Gaps = 181/570 (31%)
Query: 1548 LPTPTKSHYLFN-LRD-FARVIQGVLLSVPEAIESL------LSMKRLWVHEVLRVYYDR 1599
L PT S ++ + L++ F + +PE E + L L Y
Sbjct: 20 LLVPTASFFIASQLQEQFNK-------ILPEPTEGFAADDEPTTPAELVGK-FLG-YVSS 70
Query: 1600 LVDSD-----DRLWLFNTLKYTVEKFLQ-EDMNQLFANLKEANSTEPVGEYE-LRNLIY- 1651
LV+ D++ L L +L+ D++ L A L + N T V E ++N Y
Sbjct: 71 LVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN--YI 127
Query: 1652 --CDFANPKADQRNY---MEVTNLEDLRTIV--------ERYLTEFNNMSKKPMNLVLFR 1698
A D+++ + + + + Y E R
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-------------R 174
Query: 1699 GFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYLFN--------LRDFARV--IQY 1748
+ + + L++ + E+L L+ T + +F L + + Y
Sbjct: 175 DLYQTYHVLVGDLIKFS----AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 1749 LT------------------VTGRVGPGPPENSFSKTD-YTILNKAVREVCEKANLQVTP 1789
L VT ++ P S T ++ + VT
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL----------VTA 280
Query: 1790 F----------FLEKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLIEEWGELG 1839
F +++ ++ F I G+ AY S ++E+ E
Sbjct: 281 VAIAETDSWESFFVSVRKAITVL-----FFI-GVRC---YEAYPNTSLPPSILEDSLENN 331
Query: 1840 EHKVEIIVINP------KSITMGQLYGQFDAV-SHEWSDGILAVS----YRQFAMSQNEN 1888
E P ++T Q+ + SH + + +S + +S
Sbjct: 332 EGV-------PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---- 380
Query: 1889 RKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEIIALAPTTS--LIFEPQDLEVASP-- 1944
GP +++ +N L +K SG + P + L F + L VASP
Sbjct: 381 -------GPPQSLY--GLNLTL---RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 1945 ------ATITDESMVEDLSN---LLNSGE--VPNIFASDEKAEICEKMGVIDRQKDKSMQ 1993
A+ + + +DL N+ + +P ++ + + G D +
Sbjct: 429 SHLLVPAS---DLINKDLVKNNVSFNAKDIQIP-VYDTFD--------GS-DLRVLSGSI 475
Query: 1994 TDGTMMALFKFFVDTPWPPDALLAVATRFL 2023
++ + + + V W AT L
Sbjct: 476 SERIVDCIIRLPVK--W-ETTTQFKATHIL 502
Score = 55.1 bits (132), Expect = 3e-07
Identities = 96/631 (15%), Positives = 168/631 (26%), Gaps = 239/631 (37%)
Query: 547 PATLGWEC--LVDSWLNTLPPKVQEGHRD----SLRQLIMRFCPTILYFLRRTPFARMVD 600
P + L + + LP + D + +L+ +F L ++ + +V+
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF----LGYV-----SSLVE 73
Query: 601 DAMEAYKKKKREEWEMFPTQDSNLIRSLLNLFD-TFLDDFND------------------ 641
+ Q ++ L F+ +L+ ND
Sbjct: 74 PSKVG--------------QFDQVLNLCLTEFENCYLEG-NDIHALAAKLLQENDTTLVK 118
Query: 642 -----EKYYE-----------THPSLDIRSQLEG------IF--------FFS---CIWS 668
+ Y S R+ EG IF +F ++
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 669 MGACLTFETKPHFSNLLYGLMEKEFPASLRESLGLPVE--LCQP---PAKPYLFTVP--- 720
L + + L L+ A + GL + L P P K YL ++P
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 721 PQGTVYD---YRFIKEGKGRWKP--WSDDLASAPAIPRDMPVNQII--VTTEETLRNIAL 773
P V Y + G + P L A + + I + E+
Sbjct: 239 PLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 774 --MKLLV-----THQK-PVMFIGPT--------GTGKSCYITVSILFIKNNSRLRSGFQH 817
+ +L ++ P + P+ G +L I N
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP----MLSISN---------- 343
Query: 818 FLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSR-- 875
L+ EQ Q + N L ++ EIS + N
Sbjct: 344 -----LTQEQVQDYV------NKTNSH-------LPAGKQVEISLV---------NGAKN 376
Query: 876 ---------LRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYG 926
L G L K A + +Q++ I S+ RK
Sbjct: 377 LVVSGPPQSLY-GLNLTLRKA-------------KAPSGLDQSR-IPFSE----RK---- 413
Query: 927 PPLGKRCVVFVDDVNMP-----LKEEFGAQPPIEILRQWL--DHWMWYDRKDVVAVKLIE 979
R F+ V P L P +++ + L ++ + + KD
Sbjct: 414 LKFSNR---FL-PVASPFHSHLLV------PASDLINKDLVKNNVSF-NAKD-------- 454
Query: 980 IQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKILLW----HLDTRHESC 1035
+ + G+ + R + + + D I + W H
Sbjct: 455 --IQIPVYDTFDGSDL-----RVLSGSISERIVDC----IIRLPVKWETTTQFKATH--- 500
Query: 1036 KGITSDLFPGIELPETDYTILNKA---VREV 1063
I D PG T NK VR +
Sbjct: 501 --IL-DFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 55.1 bits (132), Expect = 4e-07
Identities = 50/312 (16%), Positives = 96/312 (30%), Gaps = 115/312 (36%)
Query: 1993 QTDGTM-MALFKFFVDTPWPPDALLAVATRFLNEVELSEAERQ-ISI-DMCQNFHVSTQN 2049
Q G M M L+K A N + + SI D+ N + N
Sbjct: 1627 QEQG-MGMDLYKTS-----------KAAQDVWNRADNHFKDTYGFSILDIVIN---NPVN 1671
Query: 2050 LSDEFLVKTSRHVYVTPTSYLELISTFKQLL--KVKQEEVLNGKNRYTVGL------EKL 2101
L+ F + + + Y + F+ ++ K+K E++ N ++ L
Sbjct: 1672 LTIHFGGEKGKRIREN---YSAM--IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 2102 DKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVKKDE------- 2154
++ QP A + +EK +A + ++G+ +
Sbjct: 1727 SAT-----------QFTQP------A-----LTLMEK-AAFEDLKSKGLIPADATFAGHS 1763
Query: 2155 --EVANEQALAAQA--M-------------KSVAEGVKKDEEVANEQALAA--------- 2188
E A ALA+ A M ++ V +DE + + A
Sbjct: 1764 LGEYA---ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 2189 ---QAMKSECEEILSEAIPILEAA---------------EA------ALNTLTSNDITVV 2224
+A++ E + ++E A LN + I ++
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 2225 KTMKSPP-DIVK 2235
+ KS + V+
Sbjct: 1881 ELQKSLSLEEVE 1892
Score = 50.8 bits (121), Expect = 6e-06
Identities = 58/320 (18%), Positives = 100/320 (31%), Gaps = 124/320 (38%)
Query: 1658 KADQRNYMEVTNLEDLRTIVERYLTEFNNMSKKPMNL-VLFRGFS----KE------FDP 1706
+AD + + T + IV NN P+NL + F G +E F+
Sbjct: 1648 RADN--HFKDTYGFSILDIVI------NN----PVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 1707 CIEQLVQATLHIFKESLLNLLPTPTKSHYLFNLRDFARVIQYLTVTGRVGPGPPENSFSK 1766
++ ++ T IFKE + Y F + S
Sbjct: 1696 IVDGKLK-TEKIFKEI------NEHSTSYTFR--------------------SEKGLLSA 1728
Query: 1767 TDYT---ILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIVGLSFAG------ 1817
T +T + + EKA +E + G + +FAG
Sbjct: 1729 TQFTQPALT------LMEKA--------------AFEDLK-SKGLIPADATFAGHSLGEY 1767
Query: 1818 ----------------KTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMG----Q 1857
+ YR +Q+ ELG +I INP +
Sbjct: 1768 AALASLADVMSIESLVEVVFYR--GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 1858 LYGQFDAVSHEWSDGIL-AVSY----RQFAMSQNENRKWLIFDGPVDAIWIENMNSVLDD 1912
L + V + ++ V+Y +Q+ + G + A ++ + +VL+
Sbjct: 1826 LQYVVERVGKR-TGWLVEIVNYNVENQQYVAA-----------GDLRA--LDTVTNVLNF 1871
Query: 1913 NKKLCLMSGEIIALAPTTSL 1932
K L +II L + SL
Sbjct: 1872 IK---LQKIDIIELQKSLSL 1888
Score = 49.3 bits (117), Expect = 2e-05
Identities = 43/288 (14%), Positives = 97/288 (33%), Gaps = 87/288 (30%)
Query: 1809 MIVGLSFAGKTCAYRML-SEALQLIEEWGELGEHKVEIIVINPKSITM------GQ-LYG 1860
M G+ + A + + + A ++ G ++I++ NP ++T+ G+ +
Sbjct: 1631 M--GMDLYKTSKAAQDVWNRADNHFKD--TYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 1861 QFDAVSHEWSDGILAVSYRQFAMSQNENRKWLIFDGPVD-----------------AIWI 1903
+ A+ E + + F NE+ F A +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFK-EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF- 1744
Query: 1904 ENMNS--VLDDNKKLC---LMSGEIIAL-APTTSLIFEPQD-----------LEVASPAT 1946
E++ S ++ + L GE AL + + E ++VA P
Sbjct: 1745 EDLKSKGLIPADATFAGHSL--GEYAALASLADVMSIE--SLVEVVFYRGMTMQVAVPRD 1800
Query: 1947 ---ITDESMVEDLSNLLNSGEVPNIFASDEKAEICEKMGVIDRQKDK----------SMQ 1993
++ M+ +N G V F+ + + E+ + ++ + Q
Sbjct: 1801 ELGRSNYGMIA-----INPGRVAASFSQEALQYVVER---VGKRTGWLVEIVNYNVENQQ 1852
Query: 1994 T--DGTMMALFKFFVDTPWPPDALLAVATRF-LNEVELSEAERQISID 2038
G + AL D + V L ++++ E ++ +S++
Sbjct: 1853 YVAAGDLRAL-----------DTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Score = 40.8 bits (95), Expect = 0.008
Identities = 45/256 (17%), Positives = 82/256 (32%), Gaps = 64/256 (25%)
Query: 966 WYDRKDVVAVKL--IEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTIFSKI 1023
W +R D I + P + T+ HF + ++ IF I
Sbjct: 1646 W-NRADNHFKDTYGFSILDIVINNPVNL--TI------HFGGEKGKRIRENYSAMIFETI 1696
Query: 1024 LLWHLDTRHESCKGITSDLFPGIELPETDYTILNKAVREVCEK-ANLQVTPFFLEKIQQI 1082
+ D + ++ K +F I T YT ++ + + Q +EK
Sbjct: 1697 V----DGKLKTEK-----IFKEINEHSTSYTF--RSEKGLLSATQFTQPALTLMEKA--A 1743
Query: 1083 YEMMIVRWGFMIVGLSFAG----------------------KTCAYR--MLSEALQLIEE 1118
+E + G + +FAG + YR + A+ E
Sbjct: 1744 FEDLK-SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 1119 -WSNQGGA---PEGPAGTGKTETTKDLAKAVAK-----LCIV-FNCSDSMDYIGLGKFFK 1168
SN G P A + E + + + V K + IV +N + Y+ G +
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ-YVAAGD-LR 1860
Query: 1169 MVDDAMEA--YKKKKR 1182
+D + K ++
Sbjct: 1861 ALDTVTNVLNFIKLQK 1876
Score = 36.6 bits (84), Expect = 0.14
Identities = 29/213 (13%), Positives = 60/213 (28%), Gaps = 77/213 (36%)
Query: 1165 KFFKMVDDAMEAYKKKKREEWVMDWPGQT------VLCVGSAYWTA-------DVHKAIA 1211
K FK +++ +Y + + ++ T + + A + A
Sbjct: 1705 KIFKEINEHSTSYTFRSEKG-LLS---ATQFTQPALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 1212 NHPKG----LSHYRDVCNAQINKI---VEIV--RGKL----PPQTRITLGALVVIDVHAR 1258
H G L A + I VE+V RG P+ + +I ++
Sbjct: 1761 GHSLGEYAAL-----ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 1259 DVVVHLVSVPVSDENDFQWLCQLRYYAEGKGRWKPWSDDLASAPAIPRDMPVN------Q 1312
V + Q++ + + G L VN Q
Sbjct: 1816 RVAASF------SQEALQYVVER--VGKRTG-------WLVE--------IVNYNVENQQ 1852
Query: 1313 IIV--TTE--ETL---------RNIALMKLLVT 1332
+ +T+ + I +++L +
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 48.8 bits (116), Expect = 2e-06
Identities = 19/106 (17%), Positives = 43/106 (40%)
Query: 2327 AICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKE 2386
+ K + V K+ L +AEE+ +L+ E +E+ + V L+ L+ + ++
Sbjct: 12 LLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK 71
Query: 2387 LKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQL 2432
++E+ + K + AE + + L ++ Y
Sbjct: 72 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117
Score = 35.0 bits (80), Expect = 0.11
Identities = 13/70 (18%), Positives = 38/70 (54%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKK 2401
+ L++AE + + A ++ + ++ ++++L + A +E+K L+D+++ + K
Sbjct: 83 SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKN 142
Query: 2402 QRAEDLIGKL 2411
E+ + +L
Sbjct: 143 YHLENEVARL 152
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 48.5 bits (115), Expect = 1e-05
Identities = 20/92 (21%), Positives = 40/92 (43%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKK 2401
+ +AE + A + +++ +Q+KL+ ++ LD + LKD Q++L+L KK
Sbjct: 19 LDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA 78
Query: 2402 QRAEDLIGKLGGEKERWSSTAKMLNEKYYQLT 2433
AE + L + + E+
Sbjct: 79 TDAEADVASLNRRIQLFEEELDRAQERLATAL 110
Score = 40.0 bits (93), Expect = 0.006
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 2330 KYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQ----------NT 2379
KY++VA+ + + L +AEE+ +L+ E +E+ + V L+ L+ +
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDK 220
Query: 2380 LDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDV 2436
+ + K L D E + + + AE + KL + KY ++ ++
Sbjct: 221 YEEEIKVLSDKLKEAE---TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274
Score = 38.9 bits (90), Expect = 0.018
Identities = 44/290 (15%), Positives = 107/290 (36%), Gaps = 20/290 (6%)
Query: 2148 EGVKKDEEVANEQALAAQAMKSVAEGVKKDEE----VANEQALAAQAMKSECEEILSEAI 2203
+ +K D+E A ++A A+A K AE K E ++ A + + E L +A
Sbjct: 9 QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ 68
Query: 2204 PILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLVEDY 2263
LE AE ++ ++ + ++ + + + + K E A +
Sbjct: 69 EKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQ-KLEEAEKAADESERGM 127
Query: 2264 WGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCK 2323
+ D + +E K+ + + + ++ + A E
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEA--KHIAEDADRKYEEVARKLVIIESDLERAEERAEL 185
Query: 2324 WVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAK 2383
+ ++ K V ++L EK + +E+ +++ +KL++ + +
Sbjct: 186 SEGKCAELEEEIKTVTNNLKSLEAQAEKYS---QKEDKYEEEIKVLSDKLKEAETRAEFA 242
Query: 2384 KKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLT 2433
++ + L+ +D DL +L +K ++ + ++ L+ +T
Sbjct: 243 ERSVTKLEKSID----------DLEDELYAQKLKYKAISEELDHALNDMT 282
Score = 33.9 bits (77), Expect = 0.59
Identities = 41/318 (12%), Positives = 111/318 (34%), Gaps = 41/318 (12%)
Query: 2077 KQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTV 2136
K+ +++ + + N +R A + + +E+ LQ + +
Sbjct: 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQ-----------KKLKAT 53
Query: 2137 EKESAEAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQALAAQAMKSECE 2196
E E + + + ++ E+A ++A A+A + + E E+ AQ +
Sbjct: 54 EDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFE---EELDRAQERLATAL 110
Query: 2197 EILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAG 2256
+ L EA + +E + + S + M+ + +A I + +
Sbjct: 111 QKLEEAEKAADESERGMKVIESRAQKDEEKME---IQEIQLKEAKHIAEDADRKY----- 162
Query: 2257 GQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSST 2316
+++ + +E +R E + + E+ ++
Sbjct: 163 -----------EEVARKLVIIESDL--------ERAEERAELSEGKCAELEEEIKTVTNN 203
Query: 2317 AAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKL 2376
+ K DK + + + L++AE + + A ++ + ++ ++++L
Sbjct: 204 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263
Query: 2377 QNTLDAKKKELKDLQDEL 2394
+ A +EL +++
Sbjct: 264 KLKYKAISEELDHALNDM 281
Score = 32.3 bits (73), Expect = 2.1
Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 2343 EALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQ 2402
+A+++ + L+L ++ ++ + + ++ + EL LQ +L +
Sbjct: 2 DAIKKKMQMLKLDKENALDRADE---AEADKKAAEDRSKQLEDELVSLQKKLKATEDELD 58
Query: 2403 RAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDV 2436
+ + + + E A L +
Sbjct: 59 KYSEALKDAQEKLELAEKKATDAEADVASLNRRI 92
Score = 30.4 bits (68), Expect = 7.2
Identities = 5/49 (10%), Positives = 19/49 (38%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDL 2390
+ AE + ++ + +++ + K + + LD ++ +
Sbjct: 236 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 49.8 bits (119), Expect = 1e-05
Identities = 71/355 (20%), Positives = 136/355 (38%), Gaps = 43/355 (12%)
Query: 2098 LEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVKKDEEV- 2156
L K+ + ++ EE++ + + A +KEL + E ++ E ++ + E+
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 2157 --ANEQALAAQAMKSVAEGVKKDEEV----ANEQALAAQAMKSECEEILSEAIPILEAAE 2210
A E + A K E + + E E++ QA K + ++ + + LE E
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 2211 AALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKS---ERVPDAGGQLVEDYWGPS 2267
AA L +T +K D + ++ L + ERV D L E+
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE----E 1024
Query: 2268 KKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIA 2327
+K K + + + RL+ E SR++ ++K EG
Sbjct: 1025 EKAKNLTKLKNKHESMISE-----LEVRLKKEEKSRQE-----LEKIKRKLEGESS--DL 1072
Query: 2328 ICKYDKVAKIVGPKKEALRQAEEKLQLAMSAL--------------HEKQEQNRIVQEKL 2373
+ ++ + K L + EE+LQ A++ L E + +QE L
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Query: 2374 QKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEK 2428
+ + + +K+ +DL +EL+ K ED + ++E S K ++K
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELE---ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 47.9 bits (114), Expect = 5e-05
Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)
Query: 2291 AVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEE 2350
A +K LE + + + ++++ A L + K +E L + E
Sbjct: 878 AELKELEQKHTQLCE-EKNLLQEKLQAETELYAEAEEMRVRLAAKKQE--LEEILHEMEA 934
Query: 2351 KLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGK 2410
+++ + Q + + +Q+++ L+ L+ ++ + LQ E K ++ ED I
Sbjct: 935 RIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILI 994
Query: 2411 LGGEKERWSSTAKMLNEKYYQLTGDV 2436
+ + + + K+L E+ LT ++
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNL 1020
Score = 36.7 bits (85), Expect = 0.11
Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 2332 DKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQ 2391
D+ K+ +K EE++ + L E++E+ + + + K ++ + + LK +
Sbjct: 997 DQNNKLTKERKLL----EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 2392 DELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQL 2432
K K++ E L + + L + +
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 47.0 bits (112), Expect = 8e-05
Identities = 15/98 (15%), Positives = 40/98 (40%)
Query: 2335 AKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDEL 2394
A+ V K+ E K+ + E+ ++ + + EK+ L+ T + ++L+ + L
Sbjct: 913 ARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972
Query: 2395 DLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQL 2432
+ ++ + A + + L E + + +
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
Score = 40.9 bits (96), Expect = 0.006
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKK 2400
+ +E++ LH+ Q + + ++E K ++ + ELK+ L
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL------ 1035
Query: 2401 KQRAEDLIGKLGGEKERWSSTAK 2423
K E+L ++ + + + T +
Sbjct: 1036 KTEKEELNRRIHDQAKEITETME 1058
Score = 40.1 bits (94), Expect = 0.011
Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKK 2400
+ ++L + L++ S EK E+L+ + + LQ+E+ K+
Sbjct: 943 EYKSLLEKMNNLEITYSTETEKLRS---DVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999
Query: 2401 KQRAEDLIGKLGGEKERWSSTAKMLNEK 2428
+ + + +++ + L +
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Score = 40.1 bits (94), Expect = 0.012
Identities = 23/153 (15%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 2293 IKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQ----- 2347
++ L +L R + + + S + + +A Y + K + + R+
Sbjct: 845 LQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904
Query: 2348 AEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKD-------LQDELDLCVKK 2400
+KL++ ++ ++ + ++ K+ +LQ +D + KE K L+ +K
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964
Query: 2401 KQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLT 2433
+ + + E + ++ L E+ +L
Sbjct: 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997
Score = 33.9 bits (78), Expect = 0.92
Identities = 11/94 (11%), Positives = 35/94 (37%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKK 2401
+ + + ++ + + ++ + EKL+ L ++E K+ + + ++
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 2402 QRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGD 2435
+ + + EK+ A + QL +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Score = 32.8 bits (75), Expect = 2.2
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELD--LCVK 2399
++ L Q + + + +E + + ++L + L + LK ++EL+ + +
Sbjct: 997 RKELHQTQTEKK-------TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Query: 2400 KKQRAEDLIGKLGGEKERWSSTAKMLNEKY 2429
K+ E + KL E ++ +Y
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 31.6 bits (72), Expect = 4.2
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 2342 KEALRQAEEKLQLAMSAL-HEKQEQNRIVQEKLQKLQNTLDAK-KKELKDLQDELDLCVK 2399
K Q +L+ + L EK+E NR + ++ +++ T++ K +E K L+ +L+
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Query: 2400 KKQ 2402
+ Q
Sbjct: 1078 RYQ 1080
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 42.2 bits (99), Expect = 1e-04
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 2347 QAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAED 2406
QAE + A + +E+ + +Q+KL+ ++ ++ + +K+ Q++L+ KK AE
Sbjct: 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86
Query: 2407 LIGKL 2411
+ L
Sbjct: 87 EVASL 91
Score = 32.2 bits (73), Expect = 0.43
Identities = 13/66 (19%), Positives = 31/66 (46%)
Query: 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKK 2400
++ +Q EE+ Q L +++ E +++ Q L+ +K+ D + E+ ++
Sbjct: 35 AEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRR 94
Query: 2401 KQRAED 2406
Q E+
Sbjct: 95 IQLVEE 100
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 42.6 bits (100), Expect = 2e-04
Identities = 20/104 (19%), Positives = 44/104 (42%)
Query: 2333 KVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQD 2392
+ K + KE + +E L+ + + E +E+ + ++ LQ + A++ L D ++
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69
Query: 2393 ELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDV 2436
D +K K + E + ++ E L K +L +
Sbjct: 70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113
Score = 35.6 bits (82), Expect = 0.057
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 2347 QAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDEL 2394
Q E K++ L +++E N + K +KL++ K+++ DL+ L
Sbjct: 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127
Score = 31.8 bits (72), Expect = 1.1
Identities = 10/57 (17%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 2360 HEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKE 2416
E++++ ++E+ +L+ L+ + K+L++++ +++K DL ++ E++
Sbjct: 9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKN---DLQLQVQAEQD 62
Score = 30.6 bits (69), Expect = 2.9
Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 21/116 (18%)
Query: 2103 KAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQAL 2162
+ ++A M+EE L+ L S A KEL E +++ E +V EQ
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKEL------EEKMVSLLQEKNDLQLQVQAEQDN 63
Query: 2163 AAQAMKSVAEGVKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTS 2218
A A E+ K + E + E LE E LT+
Sbjct: 64 LADAE---------------ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA 104
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 41.0 bits (96), Expect = 3e-04
Identities = 13/65 (20%), Positives = 30/65 (46%)
Query: 2347 QAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAED 2406
QAE + A + ++ ++++L+ +++ D +EL +D L + +AE
Sbjct: 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86
Query: 2407 LIGKL 2411
+ L
Sbjct: 87 EVASL 91
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 0.001
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 27/105 (25%)
Query: 2291 AVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEE 2350
A RL E PE ++K W + K + + +A
Sbjct: 75 AQADRLTQE--------PESIRK----------WRE---EQRKRLQ----ELDA-ASKVM 108
Query: 2351 KLQLAMSALHEKQEQNRIVQEKLQKLQ-NTLDAKKKELKDLQDEL 2394
+ + A + +E N+ E+++K + N A K + ++
Sbjct: 109 EQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 32.8 bits (74), Expect = 0.81
Identities = 14/98 (14%), Positives = 39/98 (39%), Gaps = 31/98 (31%)
Query: 2343 EALR--QAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKK 2400
E++R + E++ +L E ++ Q + KK+L++
Sbjct: 85 ESIRKWREEQRKRLQ-----ELDAASK------VMEQEWREKAKKDLEEWN--------- 124
Query: 2401 KQRAEDLIGKLGGEKERWSSTAKMLNEKYY-QLTGDVL 2437
++++E + E+ ++ ++ +Y Q D++
Sbjct: 125 QRQSE--------QVEKNKINNRIADKAFYQQPDADII 154
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 40.4 bits (95), Expect = 0.007
Identities = 40/235 (17%), Positives = 82/235 (34%), Gaps = 54/235 (22%)
Query: 2161 ALAAQAMKSVAEGVKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSND 2220
AL +A+ +V E + K +EV ++ ++ + E L + P + A+ A+ ++
Sbjct: 24 ALDLEALLAVDEQLHKQQEVIADKQMSVK-------EDLDKVEPAVIEAQNAVKSIKKQH 76
Query: 2221 ITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQLVEDYWGPSKKLLGDIKFLEGL 2280
+ V++M +PP VKL ++++ +L + D K +
Sbjct: 77 LVEVRSMANPPAAVKLALESIALL----------------------LGESTTDWKQI--- 111
Query: 2281 TNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGP 2340
+ RE+F P +V S+ K K
Sbjct: 112 -----------------RSIIMRENFIPTIVNFSAEEIS-----DAIREKMKKNYMSNPS 149
Query: 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELD 2395
+ M Q + ++++ L+N L + + KD Q +L+
Sbjct: 150 YNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLE 204
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE;
2.33A {Homo sapiens}
Length = 168
Score = 38.9 bits (90), Expect = 0.007
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKK 2400
LR++ ++ ++S L + NR +QE+ + L+N+ K+ LQ L+ +
Sbjct: 28 TAVRLRKSHTEMSKSISQL---ESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD 84
Query: 2401 KQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGD 2435
+ ++IG L K L ++ G+
Sbjct: 85 RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE 119
Score = 32.4 bits (73), Expect = 0.93
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 2341 KKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKK 2400
+ L ++ + L E R + ++ L + + LQ+E+
Sbjct: 56 RNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDL---QARITSLQEEVKHLKHN 112
Query: 2401 KQRAEDLIGKLGGEKER 2417
++ E +
Sbjct: 113 LEKVEGERKEAQDMLNH 129
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine,
axial stagger, radius, SIDE-chain packing, crystal
packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 37.4 bits (86), Expect = 0.020
Identities = 18/91 (19%), Positives = 44/91 (48%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKK 2401
+E L A +KL+ A A E + ++++ + QK + ++ ++ +LK+ + + +K
Sbjct: 16 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY 75
Query: 2402 QRAEDLIGKLGGEKERWSSTAKMLNEKYYQL 2432
+ + + + ER A++ K +L
Sbjct: 76 EEVARKLVIIESDLERAEERAELSEGKCAEL 106
Score = 33.9 bits (77), Expect = 0.22
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 2330 KYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTL-------DA 2382
KY++VA+ + + L +AEE+ +L+ E +E+ + V L+ L++ +
Sbjct: 74 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYH 133
Query: 2383 KKKELKDLQDEL 2394
+ E+ L+ +
Sbjct: 134 LENEVARLKKLV 145
Score = 32.4 bits (73), Expect = 0.99
Identities = 13/86 (15%), Positives = 35/86 (40%)
Query: 2343 EALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQ 2402
L++A+ + A E + I++ L++ + + + + +L++EL +
Sbjct: 59 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLK 118
Query: 2403 RAEDLIGKLGGEKERWSSTAKMLNEK 2428
ED + +L + + L +
Sbjct: 119 SLEDKVEELLSKNYHLENEVARLKKL 144
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 36.6 bits (84), Expect = 0.044
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKK 2401
KE + ++ Q A L E QE +R ++ +L+ + + ++L+ L K
Sbjct: 16 KELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRL------K 69
Query: 2402 QRAEDLIGKLGGEKERWSSTAKMLNEKYYQL 2432
E L KL + + +L + Q
Sbjct: 70 YEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 100
Score = 33.2 bits (75), Expect = 0.66
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 2343 EALRQAEEKLQLAMSALHEKQEQNRIVQEKLQ---KLQNTLDAKKKELKDLQDELDLCVK 2399
A R L+ L++ E+N ++ +L L ++ K E +DL+ EL + +
Sbjct: 123 RAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRER 182
Query: 2400 KKQRAE 2405
+++
Sbjct: 183 QQEVTR 188
Score = 30.9 bits (69), Expect = 3.4
Identities = 9/89 (10%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 2345 LRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRA 2404
+E+ + ++ + +++L + Q + EL+ + + ++ +
Sbjct: 5 FSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAE---QRNRDL 61
Query: 2405 EDLIGKLGGEKERWSSTAKMLNEKYYQLT 2433
+ +L E E + + Y+
Sbjct: 62 QADNQRLKYEVEALKEKLEHQYAQSYKQV 90
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled
post-transcriptional, gene regulation, chaperone; HET:
EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 36.6 bits (84), Expect = 0.070
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDA--KKKELKDLQDELDLCVK 2399
+A+ EE+ + + ++ + K+ +Q + ++EL+ L E D+ +
Sbjct: 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKE 104
Query: 2400 KKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGDV 2436
+ +A I L E +R S + L ++ +L
Sbjct: 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141
Score = 30.9 bits (69), Expect = 4.6
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 2349 EEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLI 2408
L+ L E + +++ L+ + K+K+L ++ + K E+
Sbjct: 4 NTHLK----QLIEISH----LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEK 55
Query: 2409 GKLGGEKERWSSTAKMLNEK 2428
L + + T + N K
Sbjct: 56 LALKLQVSKNEQTLQDTNAK 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.083
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 1288 KGRWKPWSDDLASAPAIPRDMPVNQIIVTTE 1318
+ K ++DD SAPA + + T E
Sbjct: 26 QASLKLYADD--SAPA----LAIK---ATME 47
Score = 34.2 bits (77), Expect = 0.21
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 731 IKEGKGRWKPWSDDLASAPAIPRDMPVNQIIVTTE 765
+K+ + K ++DD A PA + + T E
Sbjct: 22 LKKLQASLKLYADDSA--PA----LAIK---ATME 47
Score = 33.8 bits (76), Expect = 0.32
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 2268 KKLLGDIKFLEGLTNFNKDNVPAAVIK-RLE 2297
KKL +K + D+ PA IK +E
Sbjct: 23 KKLQASLKL------YADDSAPALAIKATME 47
Score = 31.1 bits (69), Expect = 2.4
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 643 KYY--ETHPSLDIRSQLE 658
K Y ++ P+L I++ +E
Sbjct: 30 KLYADDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 3.4
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 8/20 (40%)
Query: 2361 EKQEQNRIVQEKLQKLQNTL 2380
EKQ L+KLQ +L
Sbjct: 18 EKQA--------LKKLQASL 29
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor,
S active protein, toxin; 3.04A {Streptococcus pyogenes
serotype M1} PDB: 2xny_M
Length = 155
Score = 35.4 bits (80), Expect = 0.100
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 2342 KEALRQAEEKLQLAMSAL-HEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKK 2400
+ L++ ++ LA + ++Q + ++EK + L+ +D ++ +K
Sbjct: 70 ETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEK 129
Query: 2401 KQRAEDLIGKLGGEKERWSSTAKML 2425
K+ E I + + R + K L
Sbjct: 130 KKALELAIDQASQDYNRANVLEKEL 154
Score = 29.6 bits (65), Expect = 8.2
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 2346 RQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAE 2405
++AEE + + ++++ ++E Q ++ + + L+ EL+ +KK+ E
Sbjct: 50 KRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELE---EKKEALE 106
Query: 2406 DLIGKLGGEKERWSSTAKMLNEKYYQL 2432
I + + R ++ K L EK L
Sbjct: 107 LAIDQASRDYHRATALEKELEEKKKAL 133
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle,
protein transport, transport, vacuole; 2.80A
{Saccharomyces cerevisiae}
Length = 152
Score = 34.9 bits (79), Expect = 0.14
Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 2336 KIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELD 2395
G + ++ L ++ L ++ + +++++L+ + K K + L L
Sbjct: 50 DNSGAIGGNIVSHDDALLNTLAILQKELKSKE---QEIRRLKEVIALKNKNTERLNAALI 106
Query: 2396 LCVKKKQRAEDLIGKLGGE----KERW----SSTAKMLNE 2427
+ + + L E RW + +N
Sbjct: 107 SGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNS 146
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break
repair, V(D)J recombination, protein-protein complex,
coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP:
b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Length = 213
Score = 34.4 bits (78), Expect = 0.29
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 2345 LRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRA 2404
L + E ++ + + Q K + LQ + ++ D+Q + V K+
Sbjct: 113 LEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEAL 172
Query: 2405 E-DLIGKLGGEKERWSSTAKMLNEK 2428
E DL + +LNEK
Sbjct: 173 ETDLYKRF----------ILVLNEK 187
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor,
phosphoprotein, UBL conjugation, DNA-binding,
polymorphism; HET: DNA; 3.30A {Homo sapiens}
Length = 209
Score = 34.3 bits (77), Expect = 0.32
Identities = 29/173 (16%), Positives = 71/173 (41%), Gaps = 11/173 (6%)
Query: 2265 GPSKKLLGDIKFLEGLTNFNKDNVPAAVI--KRLEDEFLSREDFDPEVVKKSSTAAEGLC 2322
++ L I+ + ++N +A + ++ ++ L+ P V+ S+ + L
Sbjct: 20 SVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTSTTSSPGVIVPESSENKNLG 79
Query: 2323 KWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDA 2382
+ +D + K P + ++ EK + A L+E ++N + +++++ N +
Sbjct: 80 G--VTQESFDLMIK-ENPSSQYWKEVAEKRRKA---LYEALKENEKLHKEIEQKDNEIAR 133
Query: 2383 KKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLTGD 2435
KKE K+L + + + AE + G + + S + + D
Sbjct: 134 LKKENKELAEVAE---HVQYMAELIERLNGEPLDNFESLDNQEFDSEEETVED 183
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell
junction, cytoplasm, membrane, postsynaptic cell
membrane, synapse; 1.75A {Rattus norvegicus}
Length = 72
Score = 31.9 bits (72), Expect = 0.35
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 2346 RQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDEL 2394
+ E +L L + Q + + L+ L LD K EL +L+D L
Sbjct: 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer,
AT-rich interaction domain, NESG, ARID, cytopla binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 145
Score = 33.2 bits (75), Expect = 0.38
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 182 EEETNEFYKNIYK-LKLQFSHLPGPYGIASKVLDQVQEFKEHMPIIQTLG--NPGLQLRH 238
+ + EF +++ ++ + + + +A +VLD + + G + +
Sbjct: 32 DPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVL----VTEKGGLVEVINKKL 87
Query: 239 WEKISEVVGFPLSPEMEDFTLQRIFNYGLEEY 270
W +I++ + P S FTL+ + L Y
Sbjct: 88 WREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119
>2q0t_A Putative gamma-carboxymuconolactone decarboxylase; AHPD-like fold,
structural genomics, joint center for struct genomics,
JCSG; 1.70A {Burkholderia xenovorans} SCOP: a.152.1.1
Length = 263
Score = 33.9 bits (77), Expect = 0.57
Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 14/113 (12%)
Query: 1160 YIGLGKFFKMVDDAMEAYKKKKREEWVMDWPG-----QTVLCVGSAYWTADVHKAIANHP 1214
IG+ V +E +++ + + YW + P
Sbjct: 106 TIGIHTSNVGVPVLLEVLEEEGLRKGAPPLDERRQKLKAEFETNRGYWHPTWEGLLELDP 165
Query: 1215 KGLSHYRDVCNAQINKIVEIVRGKLPPQTR--ITLGALVVIDVHARD-VVVHL 1264
Y + + G L P+ + + + +H+
Sbjct: 166 DLFEAYVEFSSVPWR------TGVLSPKIKEFMYCAFDASATHLYVPGLKLHI 212
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 34.4 bits (78), Expect = 0.60
Identities = 21/147 (14%), Positives = 41/147 (27%), Gaps = 9/147 (6%)
Query: 2075 TFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVM-----REEIEYLQPFLMVSAANI 2129
TF K + + + + + + + S +
Sbjct: 587 TFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPV 646
Query: 2130 KELMVTVEKESAEAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQA---- 2185
+ + S + AI ++ +E Q + E K ++ E+A
Sbjct: 647 DQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKEL 706
Query: 2186 LAAQAMKSECEEILSEAIPILEAAEAA 2212
L +AM E + AEAA
Sbjct: 707 LELEAMSMAVESTGNAKAEAESRAEAA 733
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain
binding, HIP1 coiled-coil domain, endocytosis, clathrin
SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Length = 107
Score = 31.8 bits (71), Expect = 0.67
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIV--------QEKLQKLQNTLDAKKKELKDLQDE 2393
RQA+ L+ L + E+ E L+ L+ L ++EL+ LQ
Sbjct: 17 VSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGS 76
Query: 2394 LDLCVKKKQRAEDLIGKLGGEKERWSSTA 2422
L+ + + +L E++ S A
Sbjct: 77 LETSAQSEANWAAEFAELEKERDSLVSGA 105
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing,
cell junction, cytoplasm, membrane, phosphoprotein,
polymorphism; 2.90A {Homo sapiens}
Length = 79
Score = 30.7 bits (69), Expect = 0.94
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 2349 EEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDEL 2394
E +L+ +L E + + + ++ + LD EL +L++ L
Sbjct: 26 EHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis,
GDP, GMP, dynamin related, large GTPase family. GMPPNP,
GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1
c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Length = 592
Score = 33.8 bits (76), Expect = 1.0
Identities = 36/268 (13%), Positives = 83/268 (30%), Gaps = 18/268 (6%)
Query: 1950 ESMVEDLSNLLNSGEVPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTMMALFKFFVDTP 2009
ES+V N ++SG++P + + E + + Q M + ++
Sbjct: 294 ESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQ---QMGQKVQLPTESL 350
Query: 2010 WPPDALLAVATRFLNEVELSEAERQISIDMCQNFHVSTQNLSDEFLVKTSRHVYVTPTSY 2069
L + R EV + + + + + + D+F + S
Sbjct: 351 QELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEA------SS 404
Query: 2070 LELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEI--------EYLQPF 2121
+ + +EEV G G + + E E LQ +
Sbjct: 405 DRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTY 464
Query: 2122 LMVSAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVA 2181
L + ++ T + + + + K E + + + + +++ E
Sbjct: 465 LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSY 524
Query: 2182 NEQ-ALAAQAMKSECEEILSEAIPILEA 2208
E + M+++ ++L E L
Sbjct: 525 QEHLKQLTEKMENDRVQLLKEQERTLAL 552
Score = 33.0 bits (74), Expect = 1.7
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 2327 AICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQ--------EQNRIVQEKLQKLQN 2378
AI + D+ + E R E Q + LHE Q ++ R QE L++L
Sbjct: 474 AILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 533
Query: 2379 TLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQL 2432
++ + +L Q+ K Q E L+ KE + ++++ + L
Sbjct: 534 KMENDRVQLLKEQERTLA--LKLQEQEQLL------KEGFQKESRIMKNEIQDL 579
Score = 30.7 bits (68), Expect = 7.7
Identities = 59/391 (15%), Positives = 130/391 (33%), Gaps = 59/391 (15%)
Query: 2024 NEVELSEAERQISIDMCQNFHVSTQNLSDEFL----VKTSRH-VYVTPTSYLELISTFKQ 2078
+ +L++ E+ ++ F + KT + V L+ T+
Sbjct: 243 HRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVN 302
Query: 2079 LLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEK 2138
+ + +E IA +++ S + +L E+
Sbjct: 303 AISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSER 362
Query: 2139 ESAEAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQALAAQAMKSECEEI 2198
E+ E + KD + ++ LAAQ K + K+++E A C +
Sbjct: 363 EAIE--VFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQE----------ASSDRCSGL 410
Query: 2199 LSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAGGQ 2258
L I E + S P +L ++ +
Sbjct: 411 LQV---IFSPLEEEVKAGI----------YSKPGGYRLFVQKLQ---------------D 442
Query: 2259 LVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDEFLSREDFDPEVVKKSSTAA 2318
L + Y+ +K I+ E L + K D+ L+ ++ + EV + + +A
Sbjct: 443 LKKKYYEEPRK---GIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESA 499
Query: 2319 EGLCKWVIAICKYDK--VAKIVGPKKEALRQAEEKL---------QLAMSALHEKQEQNR 2367
+ K + + + ++ + + +E L+Q EK+ + + + QEQ +
Sbjct: 500 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 559
Query: 2368 IVQEKLQKLQNTLDAKKKELKDLQDELDLCV 2398
+++E QK + + ++L+ C
Sbjct: 560 LLKEGFQKESRIMKNEIQDLQTKMRRRKACT 590
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil,
alanine, symmetry, axial stagger, BEND, contractIle
protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 30.6 bits (69), Expect = 1.3
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 2343 EALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKK 2400
+ QAE + A + +++ +Q+KL+ ++ LD + LKD Q++L+L KK
Sbjct: 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 32.4 bits (74), Expect = 1.5
Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 57/199 (28%)
Query: 749 PAIPRDMPVNQIIVTTEETLRNIALMKLLV------THQKPVMFIGPTGTGKSCYITVSI 802
P ++ + + + ++ I + V K + G G GK+ Y+ +I
Sbjct: 16 PREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKT-YLLAAI 74
Query: 803 LFIKNNSRLRSG----FQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKE 858
N + + P + ++ S D+ E
Sbjct: 75 A----NELAKRNVSSLIVYV-----------PELFR-----------ELKHSLQDQTMNE 108
Query: 859 EISTIV--------DIGNEENN------------NSRLRSGFQHFLLKELSIEQWQPLIM 898
++ I D+G E + R+ F ++Q +
Sbjct: 109 KLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLT 168
Query: 899 NFSAQTSANQTQDIIMSKL 917
IM ++
Sbjct: 169 YSQRGEEEKVKAARIMERI 187
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 33.1 bits (76), Expect = 1.5
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 2330 KYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKD 2389
+ K+A ++ L++ E L + + I +Q L+A E +
Sbjct: 880 RQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSI--TAVQAKLKNLEAFDGECQS 937
Query: 2390 LQDEL--DLCVKKKQRAEDLIGKLGGEKER 2417
L+ + DL Q E + ER
Sbjct: 938 LEGQSNSDLLSILAQLTELNYNGVPELTER 967
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 32.2 bits (74), Expect = 1.7
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 1111 EALQLIEEWSNQGGAP----EGPAGTGKTETTKDLAKAV-----AKLCIVFNCSD 1156
E +Q ++ + + P GP GTGKT T LA+ + I N SD
Sbjct: 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78
Score = 31.0 bits (71), Expect = 4.3
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 7 GPAGTGKTETTKDLAKAV-----AKLCIVFNCSD 35
GP GTGKT T LA+ + I N SD
Sbjct: 45 GPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 32.4 bits (74), Expect = 1.8
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 1127 EGPAGTGKTETTKDLAKAVAKLC----IVFNCSDSMD-YIGLGKFFKMVDDAMEAYKK 1179
EGP +GKT LA +A+ I D M + K M +AYK
Sbjct: 70 EGPPHSGKTA----LAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKS 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 32.5 bits (73), Expect = 2.1
Identities = 19/174 (10%), Positives = 47/174 (27%), Gaps = 21/174 (12%)
Query: 7 GPAGTGKTETTKDLAKAVAKLC----IVFNCSDSMD----YIGLGKFFKGLIATGAWACF 58
G GTGKT T + L + + N + + + +
Sbjct: 51 GRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRD 110
Query: 59 DEFNRI------DVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPG 112
+ + + +V + + + E L R V + N
Sbjct: 111 EFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170
Query: 113 YAGRSELPDNLKSLFRTVAMMVPDYAL--ISEIIVKKLA---PYKQLYDNCIEY 161
+ L + + + + Y I +I++ + ++ ++
Sbjct: 171 V--LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQM 222
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo
sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Length = 121
Score = 30.6 bits (68), Expect = 2.2
Identities = 12/83 (14%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 2342 KEALRQAEEKL----QLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLC 2397
++ + E + M+ + + Q+K+++L+ + +L+D E++
Sbjct: 38 QKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE-- 95
Query: 2398 VKKKQRAEDLIGKLGGEKERWSS 2420
+ ++ + L ++ +K SS
Sbjct: 96 -RLRRENQVLSVRIADKKYYPSS 117
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 32.2 bits (73), Expect = 2.4
Identities = 27/185 (14%), Positives = 65/185 (35%), Gaps = 33/185 (17%)
Query: 2077 KQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTV 2136
++ + +E+ N + Q ++ + + L ++ L +
Sbjct: 117 DKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATAL 176
Query: 2137 EKESAEAAIVAEGVKKDEEVANEQAL---AAQAMKSVAEGVKKDEEVANEQALAAQA-MK 2192
+KE E E + + ++ ++ + + E+A+ A M
Sbjct: 177 QKEIGERT------------HAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMT 224
Query: 2193 SECEEILSEAIPILEAAEAA-----------------LNTLTSNDITVVKTMKSPPDIVK 2235
++ E SE +P++ A A +N L+ D+T ++T K P +V
Sbjct: 225 ADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVS 284
Query: 2236 LVMKA 2240
+++
Sbjct: 285 TILEY 289
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid
hormone receptor...; GPCR, extracellular domain, PTHRP,
PTH, PThr1, sugar transpo transport, membrane protein;
HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Length = 539
Score = 32.2 bits (73), Expect = 2.4
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDL----QDELDLC 2397
EAL+ A+ + K+EQ ++ + + L + + +
Sbjct: 360 DEALKDAQTNAAAEFDDVMTKEEQIFLLHRAQAQCEKRLKEVLQRPASIMESDKGWTSAS 419
Query: 2398 VKKKQRAEDLIGKLGGEKE 2416
K R + GKL E E
Sbjct: 420 TSGKPRKDKASGKLYPESE 438
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein,
CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger,
metal-binding; 1.40A {Rattus norvegicus}
Length = 63
Score = 29.3 bits (65), Expect = 2.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQN 2378
K+AL +E K+Q M ++ R +Q ++ KLQ
Sbjct: 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt links;
2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A
3bat_A
Length = 89
Score = 29.5 bits (66), Expect = 2.8
Identities = 12/70 (17%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 2341 KKEALRQAEEKLQLAMSALHEKQEQN-RIVQEKLQKLQNTLDAKKKELKDLQDELDLCVK 2399
+ + + + +E L E +EQN ++++K L ++ + ++++L +
Sbjct: 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQK-NDLFGSMKQLEDKVEELLSKNYHLEN 77
Query: 2400 KKQRAEDLIG 2409
+ R + L+G
Sbjct: 78 EVARLKKLVG 87
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 31.9 bits (72), Expect = 3.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 1111 EALQLIEEWSNQGGAP---EGPAGTGKTETTKDLAKAVAKL 1148
A ++ + + GPAGTG T TK + +A+
Sbjct: 32 NAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST 72
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 31.4 bits (71), Expect = 4.1
Identities = 31/196 (15%), Positives = 71/196 (36%), Gaps = 25/196 (12%)
Query: 2197 EILSEAIPILEAAEAALNTLTSNDITVVKTMKSPPDIVKLVMKAVCILKGVKSERVPDAG 2256
+EAI + E A DI +++T+ + + + P G
Sbjct: 153 RTTNEAILLCEGAG--------YDIILIETVGVGQSEFAVADMVDMFVLLL----PPAGG 200
Query: 2257 GQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNVPAAVIKRLEDE----FLSR--EDFDPEV 2310
+L K+ + ++ L +T + D + A + E L + + + P+V
Sbjct: 201 DEL-----QGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKV 255
Query: 2311 VKKSSTAAEGLCKWVIAICKYDKVAKIVG--PKKEALRQAEEKLQLAMSALHEKQEQNRI 2368
++ S+ + EG+ + + + + G K +Q L ++ E +
Sbjct: 256 IRISARSGEGISEMWDKMKDFQDLMLASGELTAKRRKQQKVWMWNLIQESVLEHFRTHPT 315
Query: 2369 VQEKLQKLQNTLDAKK 2384
V+E++ L+ +
Sbjct: 316 VREQIPLLEQKVLIGA 331
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 31.2 bits (71), Expect = 4.3
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 7 GPAGTGKTETTKDLAKAVA---KLCIVFNCSDS 36
GP GTGK+ LAKAVA F+ S S
Sbjct: 52 GPPGTGKSY----LAKAVATEANNSTFFSISSS 80
Score = 31.2 bits (71), Expect = 4.3
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 1128 GPAGTGKTETTKDLAKAVA---KLCIVFNCSDS 1157
GP GTGK+ LAKAVA F+ S S
Sbjct: 52 GPPGTGKSY----LAKAVATEANNSTFFSISSS 80
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 31.1 bits (71), Expect = 4.3
Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 2125 SAANIKELMVTVEKESAEAAIVAEGVKKDEEVANEQA-LAAQAMKSVAEGVKKDEEVANE 2183
++ N++ ++ + + +A V+ + E + A A + + S+ V++ E+
Sbjct: 178 ASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQN 237
Query: 2184 QALAAQAMKSECEEILSEAIPILEAAE 2210
A A + + +EI + + AE
Sbjct: 238 IAAAIEEQTAAVDEITTAMTENAKNAE 264
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding,
kinetoch replication-replication complex; 3.05A
{Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Length = 190
Score = 30.8 bits (69), Expect = 4.4
Identities = 9/72 (12%), Positives = 26/72 (36%)
Query: 2363 QEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTA 2422
++Q + L N ++L E+ K+ + +L + + + +
Sbjct: 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71
Query: 2423 KMLNEKYYQLTG 2434
+++ + Y L
Sbjct: 72 EVIKDLYEYLCN 83
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 31.4 bits (70), Expect = 4.8
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 2341 KKEALRQAEEKLQ-----LAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELD 2395
+++ L A+ Q + + + +KQ++ ++ ++ + K L+DLQDE D
Sbjct: 112 ERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYD 171
Query: 2396 LCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLT 2433
K Q E + ++ +L + Y L
Sbjct: 172 FKCKTLQNREHETNGVAKSDQK--QEQLLLKKMYLMLD 207
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical
hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB:
2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Length = 150
Score = 30.0 bits (67), Expect = 6.0
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 16/129 (12%)
Query: 2115 IEYLQPFLMVSAANIKEL---MVTVEKESAEAAI--VAEGVKKDEEVANEQALAAQAM-- 2167
++ L + +I L MV K A A +++ + A + L A
Sbjct: 21 LKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSNPPAAWKGPLKNCAFSY 80
Query: 2168 ---------KSVAEGVKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTS 2218
+++ K D + A + + + ECEE + A A++ L+
Sbjct: 81 KVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKGSKSPFSALNIAVHELSD 140
Query: 2219 NDITVVKTM 2227
+V+ +
Sbjct: 141 VGRAIVRNL 149
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 28.7 bits (64), Expect = 6.3
Identities = 13/69 (18%), Positives = 30/69 (43%)
Query: 2343 EALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQ 2402
+ L E+ ++ L + Q + + ++ + Q K++ +L DEL + +
Sbjct: 25 QELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84
Query: 2403 RAEDLIGKL 2411
A+ + KL
Sbjct: 85 YAQMQLDKL 93
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 30.7 bits (70), Expect = 6.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 7 GPAGTGKTETTKDLAKAVAKLC--IVFNCSDS 36
GP G GKT LA+AVA C N S +
Sbjct: 61 GPPGNGKTL----LARAVATECSATFLNISAA 88
Score = 30.7 bits (70), Expect = 6.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLC--IVFNCSDS 1157
GP G GKT LA+AVA C N S +
Sbjct: 61 GPPGNGKTL----LARAVATECSATFLNISAA 88
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 30.6 bits (69), Expect = 6.8
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 1545 LNLLPTPTKSHYLFNLRDFARVIQGV---LLSVPEAIESLLSMKRLWVHEVLRVYYDRLV 1601
L T F++R + G + + +L + WV V
Sbjct: 216 DKLPEHVTMPDGDFSIRSWLEDPNGGNLFITWREDMGPALRPLISAWVDVVCTSILSLPE 275
Query: 1602 DSDDRLWLF 1610
+ RLWLF
Sbjct: 276 EPKRRLWLF 284
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 30.2 bits (69), Expect = 6.9
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 7 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD 38
G G GKT + LAK + NC +
Sbjct: 52 GTRGVGKTSIARLLAKGL-------NCETGIT 76
Score = 30.2 bits (69), Expect = 6.9
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSMD 1159
G G GKT + LAK + NC +
Sbjct: 52 GTRGVGKTSIARLLAKGL-------NCETGIT 76
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 31.0 bits (70), Expect = 6.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 7 GPAGTGKTETTKDLAKAVAKLC----IVFNCSD 35
GP G GKT T A VA+ + N SD
Sbjct: 84 GPPGIGKT-TA---AHLVAQELGYDILEQNASD 112
Score = 31.0 bits (70), Expect = 6.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLC----IVFNCSD 1156
GP G GKT T A VA+ + N SD
Sbjct: 84 GPPGIGKT-TA---AHLVAQELGYDILEQNASD 112
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 30.6 bits (69), Expect = 7.0
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 7 GPAGTGKTETTKDLAKAVAKLC--IVFNCSDS 36
GP G GKT LAKAVA FN S +
Sbjct: 155 GPPGNGKTM----LAKAVAAESNATFFNISAA 182
Score = 30.6 bits (69), Expect = 7.0
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLC--IVFNCSDS 1157
GP G GKT LAKAVA FN S +
Sbjct: 155 GPPGNGKTM----LAKAVAAESNATFFNISAA 182
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 30.7 bits (70), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 7 GPAGTGKTETTKDLAKA 23
GP G GKTE T L+KA
Sbjct: 495 GPTGVGKTEVTVQLSKA 511
Score = 30.7 bits (70), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 1128 GPAGTGKTETTKDLAKA 1144
GP G GKTE T L+KA
Sbjct: 495 GPTGVGKTEVTVQLSKA 511
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 30.4 bits (69), Expect = 8.5
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 7 GPAGTGKTETTKDLAKAV-----AKLCIVFNCSD 35
GP GTGKT T LA+ + I N SD
Sbjct: 45 GPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78
Score = 30.4 bits (69), Expect = 8.5
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 1128 GPAGTGKTETTKDLAKAV-----AKLCIVFNCSD 1156
GP GTGKT T LA+ + I N SD
Sbjct: 45 GPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle,
hypothetical protein; 2.8A {Escherichia coli}
Length = 81
Score = 28.0 bits (62), Expect = 8.5
Identities = 15/76 (19%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 2343 EALRQAEEKLQLAMSA-------LHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELD 2395
E + E K+Q A+ + E +E+N + +++Q Q+ + ++E L+++ +
Sbjct: 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65
Query: 2396 LCVKKKQRAEDLIGKL 2411
++R + L+G++
Sbjct: 66 GW---QERLQALLGRM 78
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin,
spectrin repeat, three helix bundle, ANKY binding,
disease mutation, structural protein, ZU5 sandwich; 2.75A
{Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 30.3 bits (68), Expect = 8.7
Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 2/94 (2%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELD--LCVK 2399
E L +EK + + + + +++ QD
Sbjct: 227 AEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAY 286
Query: 2400 KKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQLT 2433
++AE + K W + + QL
Sbjct: 287 AGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLV 320
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 30.6 bits (70), Expect = 8.8
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 7 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSM 37
GP G GKTE LA+A+A+ +F +SM
Sbjct: 528 GPTGVGKTE----LARALAES--IFGDEESM 552
Score = 30.6 bits (70), Expect = 8.8
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSM 1158
GP G GKTE LA+A+A+ +F +SM
Sbjct: 528 GPTGVGKTE----LARALAES--IFGDEESM 552
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 30.1 bits (67), Expect = 9.0
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 19/126 (15%)
Query: 6 EGPAGTGKTETTKDLAKAVAKLCI-----VFNCSDS----MDYIGLGKFFKGLI--ATGA 54
G GTGKT +A + +L + + + K ++ A G
Sbjct: 73 TGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGG 132
Query: 55 WACFDE----FNRIDVEVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMN 110
DE + + A +IL + ++ G +++ F N
Sbjct: 133 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMEN----FFQSN 188
Query: 111 PGYAGR 116
PG+ R
Sbjct: 189 PGFRSR 194
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural
genomics, PSI-2; HET: PG5; 1.49A {Burkholderia
thailandensis}
Length = 142
Score = 29.0 bits (66), Expect = 9.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 2343 EALRQAEEKLQLAMSA 2358
AL +EE+ QLA+S
Sbjct: 2 NALSASEERFQLAVSG 17
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 30.4 bits (69), Expect = 9.1
Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 21/150 (14%)
Query: 2117 YLQPFLMVSAANIKELMVTVEKESAEAAIVAEGVK-----------KDEEVANEQALAAQ 2165
L+PFL ++ I L+ E + E + G K D+++
Sbjct: 503 LLEPFLPDASEKIWHLLNLDEVKRWEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMA 562
Query: 2166 AMKSVAEGVKKDEEVANEQALAAQAMKSECEEILSEAIPILEAAEAALNTLTSNDITVVK 2225
+ D+ E + K E + + +
Sbjct: 563 KGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEKKEGKEMYVKF-- 620
Query: 2226 TMKSPPDIVKLVMKAVCILKGVKSERVPDA 2255
D KL ++ + K ++ + P+A
Sbjct: 621 -----DDFAKLDLR---VGKIIEVKDHPNA 642
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 30.4 bits (69), Expect = 9.2
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 2125 SAANIKELMVTVEKESA--EAAIVAEGVKKDEEVANE-------QALAAQAMKSVAEGVK 2175
+ L + + A AEGV+ E+ N LA A +
Sbjct: 152 DETGLTTLAIAGDDARALAVGVATAEGVEFARELGNLPPNYCTPAYLADTAAAFAGKFPG 211
Query: 2176 KDEEVANEQALAAQAMKS 2193
+ E+ +E + A M S
Sbjct: 212 AEAEILDEAQMEALGMGS 229
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 29.3 bits (66), Expect = 9.6
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 319 FPG--IELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIV 371
P +E ET ++ A RE+ E+ + P ++ Q + +
Sbjct: 33 QPAGHLEADET---LVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLF 84
Score = 29.3 bits (66), Expect = 9.6
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 1043 FPG--IELPETDYTILNKAVREVCEKANLQVTPFFLEKIQQIYEMMIVRWGFMIV 1095
P +E ET ++ A RE+ E+ + P ++ Q + +
Sbjct: 33 QPAGHLEADET---LVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLF 84
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 29.1 bits (65), Expect = 9.9
Identities = 16/85 (18%), Positives = 29/85 (34%)
Query: 2326 IAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKK 2385
IAI + + V K E + + S L + + +KLQ ++ D K
Sbjct: 6 IAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKL 65
Query: 2386 ELKDLQDELDLCVKKKQRAEDLIGK 2410
E + K + +D +
Sbjct: 66 EKDVMAQRQTFAQKAQAFEQDRARR 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 40,225,000
Number of extensions: 2560599
Number of successful extensions: 7649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7436
Number of HSP's successfully gapped: 240
Length of query: 2567
Length of database: 6,701,793
Length adjustment: 110
Effective length of query: 2457
Effective length of database: 3,630,483
Effective search space: 8920096731
Effective search space used: 8920096731
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (29.1 bits)