RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12680
(2567 letters)
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin
zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Length = 273
Score = 35.3 bits (80), Expect = 0.085
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 7/87 (8%)
Query: 1109 LSEALQLIEEWSNQGGAPE-----GPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIG- 1162
L++ L+ + + +P G G+GKT + + IV +
Sbjct: 15 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN 74
Query: 1163 -LGKFFKMVDDAMEAYKKKKREEWVMD 1188
D ++
Sbjct: 75 FDELVKLYEKDVVKHVTPYSNRMTEAI 101
Score = 30.7 bits (68), Expect = 2.0
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 7 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSM----DYIGLGKFFKGLIATGAWACFDEFN 62
G G+GKT + + IV + ++ L K ++ + +
Sbjct: 39 GQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMT 98
Query: 63 RIDVE 67
+
Sbjct: 99 EAIIS 103
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain
{Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 33.9 bits (77), Expect = 0.25
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 4/66 (6%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFK----MVDDAMEAYKKKKRE 1183
GP +GKT L + + N LG + +D + +
Sbjct: 161 GPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDL 220
Query: 1184 EWVMDW 1189
Sbjct: 221 PSGQGI 226
Score = 32.7 bits (74), Expect = 0.58
Identities = 9/45 (20%), Positives = 13/45 (28%)
Query: 7 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIA 51
GP +GKT L + + N LG +
Sbjct: 161 GPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLV 205
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 32.6 bits (73), Expect = 0.34
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 5/115 (4%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVM 1187
G G+GK+ + LAK L +VF SD + + + + +++E+ +
Sbjct: 7 GFMGSGKSTLARALAK---DLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMA 63
Query: 1188 DWPGQTVLCVGSAYWTADVHKAIANHPKGLSHYRDVCNAQINKIVEIVRGKLPPQ 1242
D+ + + G Y + K ++ P
Sbjct: 64 DFFSSCEKACIATGGGFVNVSNLEKA--GFCIYLKADFEYLKKRLDKDEISKRPL 116
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 300
Score = 32.8 bits (74), Expect = 0.56
Identities = 32/270 (11%), Positives = 78/270 (28%), Gaps = 19/270 (7%)
Query: 1951 SMVEDLSNLLNSGEVPNIFASDEKAEICEKMGVIDRQKDKSMQTDGTMMALFKFFVDTPW 2010
S+V N ++SG++P + + E + + Q M + ++
Sbjct: 12 SLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQ---QMGQKVQLPTES-- 66
Query: 2011 PPDALLAVATRFLNEVELSEAERQISIDMCQNF----HVSTQNLSDEFLVKTSRHVYVTP 2066
LL + E D+ F + D+F +
Sbjct: 67 -LQELLDLHRDSEREAIEVFIRSSFK-DVDHLFQKELAAQLEKKRDDFCKQNQEA----- 119
Query: 2067 TSYLELISTFKQLLKVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSA 2126
S + + +EEV G G + + E
Sbjct: 120 -SSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEIL 178
Query: 2127 ANIKELMVTVEKE--SAEAAIVAEGVKKDEEVANEQALAAQAMKSVAEGVKKDEEVANEQ 2184
+ ++ + + + + + E ++ A A K ++ + ++
Sbjct: 179 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE 238
Query: 2185 ALAAQAMKSECEEILSEAIPILEAAEAALN 2214
+ +K E++ ++ + +L+ E L
Sbjct: 239 RSYQEHLKQLTEKMENDRVQLLKEQERTLA 268
Score = 30.5 bits (68), Expect = 2.9
Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 10/166 (6%)
Query: 2229 SPPDIVKLVMKAVCILKGVKSERVPDAGGQLVEDYWGPSKKLLGDIKFLEGLTNFNKDNV 2288
S P +L ++ + LK K P G Q E K + +
Sbjct: 145 SKPGGYRLFVQKLQDLK-KKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKE 203
Query: 2289 PAAVIKRLEDEFLSREDFDPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQA 2348
++R++ E +++ + + K+ + + L++
Sbjct: 204 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 263
Query: 2349 EEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDEL 2394
E L + QEQ ++++E QK K E++DLQ ++
Sbjct: 264 ERTLA------LKLQEQEQLLKEGFQKES---RIMKNEIQDLQTKM 300
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 32.5 bits (73), Expect = 0.82
Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 21/137 (15%)
Query: 2268 KKLLGDIKFLEGL-------TNFNKDNVPAAVIKRLEDEF-----LSREDFDPEVVKKSS 2315
+K +KF++ + TN ++ + + F + E+ ++ +
Sbjct: 603 EKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQIN 662
Query: 2316 TAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQK 2375
++ ++ +E E L + + + +E+ QK
Sbjct: 663 DVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIW---------SLTKERYQK 713
Query: 2376 LQNTLDAKKKELKDLQD 2392
L K+ EL++L
Sbjct: 714 LLKQKQEKETELENLLK 730
>d1j5ua_ d.208.1.1 (A:) Hypothetical protein TM1083 {Thermotoga
maritima [TaxId: 2336]}
Length = 127
Score = 30.6 bits (69), Expect = 0.84
Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 382 YRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQF 441
+ +++ + I + +++ +L F + + I A++Y
Sbjct: 61 FDTVNDWILEISK--GWAPWRIKR--------EGNELKVTFRKIRKKEGTEIKALTYHLL 110
Query: 442 AMSQNENRKWL--IFD 455
++ + +FD
Sbjct: 111 KFERDGDVLKTKVVFD 126
Score = 30.6 bits (69), Expect = 0.84
Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 1822 YRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHEWSDGILAVSYRQF 1881
+ +++ + I + +++ +L F + + I A++Y
Sbjct: 61 FDTVNDWILEISK--GWAPWRIKR--------EGNELKVTFRKIRKKEGTEIKALTYHLL 110
Query: 1882 AMSQNENRKWL--IFD 1895
++ + +FD
Sbjct: 111 KFERDGDVLKTKVVFD 126
>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 30.5 bits (69), Expect = 0.86
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 768 LRN-IALMKLLVTHQKPVMFIGPTGTGKSCYITVSI 802
LRN A MK V + F+G +G GKS +T+++
Sbjct: 68 LRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITV 103
Score = 30.5 bits (69), Expect = 0.86
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 1321 LRN-IALMKLLVTHQKPVMFIGPTGTGKSCYITVSI 1355
LRN A MK V + F+G +G GKS +T+++
Sbjct: 68 LRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITV 103
>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 29.8 bits (67), Expect = 0.99
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 2361 EKQEQNRI-VQEKLQKLQNTLDAKKKELKDLQDELDLCVKKKQRAEDLI 2408
++ E+ R EK +++Q L A EL + +DE K+ A D+I
Sbjct: 15 DRSEEERTTEAEKNERVQKHLKALTSELANARDE------SKKTANDMI 57
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
Length = 166
Score = 30.6 bits (69), Expect = 1.5
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 2342 KEALRQAEEKLQLAMSALHE-----KQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELD 2395
KEAL QA + ++ L + ++E N + +Q T+ +K K++ ++
Sbjct: 73 KEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNME 131
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 31.3 bits (69), Expect = 1.6
Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 9/231 (3%)
Query: 753 RDMPVNQIIVTTEETLRNIALMKLLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLR 812
R+ + Q+ + LRN H +G GTGK+ + K+ + R
Sbjct: 21 REQQLQQLDILLGNWLRNPG------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTAR 74
Query: 813 SGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKEEISTIVDIGNEENN 872
+ + + + + + L E + + ++
Sbjct: 75 FVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAF 134
Query: 873 NSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGK- 931
N L + + + I + ++ S K V
Sbjct: 135 NLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTK 194
Query: 932 --RCVVFVDDVNMPLKEEFGAQPPIEILRQWLDHWMWYDRKDVVAVKLIEI 980
+ +D L E ++ ++++ D A I+I
Sbjct: 195 DQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 245
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 30.9 bits (69), Expect = 2.0
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLCIV-FNCSDSMDYIGLG----KFFKMVDDAMEAYKKKKR 1182
GP G GKTE +A+ +AKL F ++ + +G + ++ D ++ K R
Sbjct: 56 GPTGVGKTE----IARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVR 111
Query: 1183 EEW 1185
++
Sbjct: 112 QQE 114
Score = 29.7 bits (66), Expect = 5.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 7 GPAGTGKTETTKDLAKAVAKLCIV 30
GP G GKTE +A+ +AKL
Sbjct: 56 GPTGVGKTE----IARRLAKLANA 75
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 30.7 bits (68), Expect = 2.1
Identities = 26/180 (14%), Positives = 45/180 (25%), Gaps = 15/180 (8%)
Query: 1131 GTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMDWP 1190
G+G E A+ + S + ++ + +V +
Sbjct: 41 GSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 100
Query: 1191 GQTVLCVGSAYWTADVHKAIAN-----HPKGLSHYRDVCNAQINKIVEIVRGKL--PPQT 1243
CVG+ + A P G+ + Q+ EI +
Sbjct: 101 CDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSD 160
Query: 1244 RITLGALVVIDVHARDVVVHLVSVPVSDENDFQWLCQLRYYAEGKGRWKPWSDDLASAPA 1303
+TL LV VV +V RY A + W +
Sbjct: 161 FLTLPGLVGAFDDLGYDVVEMVLADQEG--------WDRYEAAKWLTMRRWLEANPDDDF 212
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 30.6 bits (69), Expect = 2.2
Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 20/159 (12%)
Query: 784 VMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLI---MNFSAQTS 840
V +G +G+GKS I I + L+E ++ + + +
Sbjct: 44 VALVGRSGSGKST-IASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 102
Query: 841 ANQTQDIIMSKLDKRRKEEISTIVDIGNEENNNSRLRSGFQHFLLK---ELSIEQWQ--- 894
+I ++ ++ +E+I + + +++ +G + + LS Q Q
Sbjct: 103 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 162
Query: 895 --------PLIMNFSAQTSA--NQTQDIIMSKLDKRRKG 923
I+ TSA +++ I + LD+ +K
Sbjct: 163 IARALLRDSPILILDEATSALDTESERAIQAALDELQKN 201
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 30.5 bits (68), Expect = 2.4
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 23/140 (16%)
Query: 1096 GLSFAGKTCAYRMLSEALQLIEEWSNQGGAPEGPAGTGKTETTKDLAKAVAKLCIVFNCS 1155
GKT A I+ N G T L K AK+ V +
Sbjct: 26 WGGIEGKTVA----------IQGMGNVGRW-----------TAYWLEKMGAKVIAV-SDI 63
Query: 1156 DSMDYIGLGKFFKMVDDAMEAYKKKKREEWVMDWPGQTVLCVGSAYWTADVHKAIANHPK 1215
+ + Y G +++ E + + V A + DV + +
Sbjct: 64 NGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFV-KNPDAIFKLDVDIFVPAAIE 122
Query: 1216 GLSHYRDVCNAQINKIVEIV 1235
+ + + +VE
Sbjct: 123 NVIRGDNAGLVKARLVVEGA 142
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 28.7 bits (64), Expect = 2.5
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 2352 LQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQ 2391
L+ A + + Q + + + + L+ + K +L+ L
Sbjct: 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 29.4 bits (66), Expect = 2.6
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 2156 VANEQALAAQAMKSVAEGVKKDEEV--ANEQALAAQAMKSECEEILSEAIPILEAAEAAL 2213
+ A+ + +K + +KK +++ A A+++E S + PI E A+
Sbjct: 72 RDQDSAVVSSNIKKIVADLKKGKDLSPAINYTKLKNAVQNE-----SVSSPI-ELNFDAV 125
Query: 2214 NTLTSNDITVV 2224
V
Sbjct: 126 KDFKLGKFNYV 136
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.9 bits (66), Expect = 2.7
Identities = 18/165 (10%), Positives = 36/165 (21%), Gaps = 9/165 (5%)
Query: 7 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKGLIATGAWACFDEFNRIDV 66
+GTGKT L K + + ++ +
Sbjct: 9 AWSGTGKT----TLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 67 EVLSVVAQQILTIQRGVTLGEEEILFEGTILKLDRTCSVFITMNPGYAGRSELPDNLKSL 126
+ L + + KLD
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRP 124
Query: 127 FR-----TVAMMVPDYALISEIIVKKLAPYKQLYDNCIEYQEKHK 166
V + D L ++ + + + L D +E+ +K
Sbjct: 125 EELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQN 169
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 28.7 bits (64), Expect = 3.2
Identities = 13/89 (14%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 2307 DPEVVKKSSTAAEGLCKWVIAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQN 2366
+PEV ++ +G+ + A+ D+ + + + + ++ E+ Q+A E+
Sbjct: 10 EPEVFHRA-IREKGVALDLEALLALDREVQELKKRLQEVQT--ERNQVAKRVPKAPPEEK 66
Query: 2367 RIVQEKLQKLQNTLDAKKKELKDLQDELD 2395
+ + + L ++ L++ + L+
Sbjct: 67 EALIARGKALGEEAKRLEEALREKEARLE 95
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach
(Spinacia oleracea) [TaxId: 3562]}
Length = 112
Score = 28.6 bits (64), Expect = 3.8
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 2342 KEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKDLQDELDLCVKKK 2401
++A + L+L S L + + ++ K + + +L +L D LD K K
Sbjct: 31 RKAWPSLQNDLRLRASYL--RYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIK 88
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 29.2 bits (65), Expect = 3.9
Identities = 16/82 (19%), Positives = 28/82 (34%)
Query: 2326 IAICKYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKK 2385
IAI + + V K E + + S L + + +KLQ ++ D K
Sbjct: 6 IAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKL 65
Query: 2386 ELKDLQDELDLCVKKKQRAEDL 2407
E + K + +D
Sbjct: 66 EKDVMAQRQTFAQKAQAFEQDR 87
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.4 bits (65), Expect = 4.9
Identities = 30/221 (13%), Positives = 63/221 (28%), Gaps = 27/221 (12%)
Query: 1329 LLVTHQKP--VMFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIM 1386
++ + P +M +G GTGK+ F K + + ++EQ Q L
Sbjct: 5 KVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQ 64
Query: 1387 NFSAQTSANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEILR 1446
+ ++ ++GV K ++ VD G E
Sbjct: 65 QIGVPVYGEPGEKDVV---GIAKRGVEKFLSEKMEIIIVDTA--------GRHGYGEEAA 113
Query: 1447 QWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMV- 1505
+ + + + + + ++G + + I+I K D
Sbjct: 114 LLEEMKNI---YEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGG 170
Query: 1506 TIFSKILLWHLDTRGFS--------KEFDPCIEQLVQATLH 1538
S + + + F+P + V H
Sbjct: 171 GALSAVAATGATIKFIGTGEKIDELEVFNP--RRFVARLHH 209
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 4.9
Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 5/113 (4%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLC--IVFNCSDSMDYIG---LGKFFKMVDDAMEAYKKKKR 1182
G G+GKT T LA + +D+ L + V + +
Sbjct: 17 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGES 76
Query: 1183 EEWVMDWPGQTVLCVGSAYWTADVHKAIANHPKGLSHYRDVCNAQINKIVEIV 1235
E + + D + + + V +V
Sbjct: 77 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLV 129
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 28.9 bits (63), Expect = 5.4
Identities = 12/76 (15%), Positives = 28/76 (36%)
Query: 2330 KYDKVAKIVGPKKEALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQNTLDAKKKELKD 2389
+ K+ +A ++A + L++ + V EK + ++ K+
Sbjct: 110 VLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDK 169
Query: 2390 LQDELDLCVKKKQRAE 2405
L+ K+KQ +
Sbjct: 170 YTKVLNKVQKEKQDVD 185
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 427
Score = 29.7 bits (65), Expect = 5.4
Identities = 38/340 (11%), Positives = 83/340 (24%), Gaps = 24/340 (7%)
Query: 785 MFIGPTGTGKSCYIT-VSILFIKNNSRLRSGFQHFLLKELSIEQWQPLIMNFSAQTSANQ 843
IGP G+GKS + +S + ++ LRS + LI +
Sbjct: 29 SIIGPNGSGKSNMMDAISFVLGVRSNHLRS------------NILKDLIYRGVLNDENSD 76
Query: 844 TQDIIMSKLDKRRKEEISTIVDIGNEENNNSRLRSGFQHFLL----KELSIEQWQPLIMN 899
D + + + GN+ R+ S K +S + + + N
Sbjct: 77 DYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLEN 136
Query: 900 FSAQT---SANQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGAQPPIEI 956
+ + Q + + + + LKE+
Sbjct: 137 ENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSAT 196
Query: 957 LRQWLDHWMWYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTM 1016
+ + K + L + + Q+ +
Sbjct: 197 ESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQ 256
Query: 1017 VTIFSKILLWHLDTRHESCKGITSDLFPGIELPETDYTILNKAVREVCEKANLQVTPFFL 1076
K + + ++ + T N + ++
Sbjct: 257 FLKIKKKRKELFEKTFDYVSDHLDAIYREL----TKNPNSNVELAGGNASLTIEDEDEPF 312
Query: 1077 EKIQQIYEMMIVRWGFMIVGLSFAGKTCAYRMLSEALQLI 1116
+ + ++ + LS KT A L A+
Sbjct: 313 NAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSY 352
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 28.3 bits (63), Expect = 5.9
Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 28/118 (23%)
Query: 2343 EALRQAEEKLQLAMSALHEKQEQNRIVQEKLQKLQN------------------TLDAKK 2384
+ E +Q M A+ + I+++ L +Q L
Sbjct: 11 NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTS 70
Query: 2385 KEL----------KDLQDELDLCVKKKQRAEDLIGKLGGEKERWSSTAKMLNEKYYQL 2432
+ + K+ +D ++ +K E + K+G + L+ + +L
Sbjct: 71 EVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 29.4 bits (65), Expect = 6.0
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 1604 DDRLWLFNTLKYTVEKFLQEDMNQLFANLKEANSTEPVGEYELRNLIYCDFANPKADQRN 1663
R+ L E+ L E L K +TE V A
Sbjct: 193 PIRVELTALSAADFERILTEPHASLTEQYKALMATEGV-NIAFTTDAVKKIAEAAFRVNE 251
Query: 1664 YMEVTNLEDLRTIVERYLTEF 1684
E L T++ER + +
Sbjct: 252 KTENIGARRLHTVMERLMDKI 272
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
{Vibrio cholerae [TaxId: 666]}
Length = 340
Score = 29.2 bits (65), Expect = 6.0
Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 24/192 (12%)
Query: 1618 EKFLQEDMNQLFANLKEANSTEPVGEYELRNLIYCDFANPKADQRNYMEVTNLEDLRT-I 1676
+F+++++N+LF + STE L+ L+ FAN R ++ DL I
Sbjct: 103 VRFIEQNLNRLFDDKPHTPSTELAIADNLKVLLRQFFANTDEHSRWHL------DLHCAI 156
Query: 1677 VERYLTEFNNMSKKPMNLVLFRGFSKEFDPCIEQLVQATLHIFKESLLNLLPTPTKSHYL 1736
F K + Q ++ HI + +L+ P+ T S Y
Sbjct: 157 RGSKHYSFAVSPKARHP---------VRSRSLMQFIEQ-AHI-EAVMLSNAPSSTFSWYS 205
Query: 1737 FNLRDFARVIQYLTVTGRVGPGPPENSFSKTDYTILNKAVREVCEKANLQVTPFFLEKIQ 1796
A +T +G + A+R++ + + P +
Sbjct: 206 ------AEHYAAQALTLELGQVARLGENLLDRLLAFDLAMRDLISRHKPEHLPRKSVMYR 259
Query: 1797 QIYEMMIVRWGF 1808
++ + F
Sbjct: 260 VSRTIVRLHDDF 271
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 28.7 bits (63), Expect = 6.5
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 6/121 (4%)
Query: 1128 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSM---DYIGLGKFFKMVDDAMEAYKKKKREE 1184
GP G GK LA+ KL I + + + K ++A +
Sbjct: 7 GPPGAGKGTQAVKLAE---KLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63
Query: 1185 WVMDWPGQTVLCVGSAYWTADVHKAIANHPKGLSHYRDVCNAQINKIVEIVRGKLPPQTR 1244
+ + + D + K L + I+ ++E + R
Sbjct: 64 TNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLER 123
Query: 1245 I 1245
+
Sbjct: 124 L 124
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.8 bits (64), Expect = 6.5
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 776 LLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRS 813
L+ + V+ G +G GKS ++ IK RL +
Sbjct: 10 LVDVYGVGVLITGDSGIGKS---ETALELIKRGHRLVA 44
Score = 28.8 bits (64), Expect = 6.5
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 1329 LLVTHQKPVMFIGPTGTGKSCYITVSILFIKNNSRLRS 1366
L+ + V+ G +G GKS ++ IK RL +
Sbjct: 10 LVDVYGVGVLITGDSGIGKS---ETALELIKRGHRLVA 44
>d1l8wa_ a.154.1.1 (A:) Variable surface antigen VlsE {Lyme disease
spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 291
Score = 29.0 bits (65), Expect = 7.0
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 15/105 (14%)
Query: 2081 KVKQEEVLNGKNRYTVGLEKLDKAASQIAVMREEIEYLQPFLMVSAANIKELMVTVEKES 2140
K + K+ + K D S + I+ + EL+ + K
Sbjct: 34 KTDLNSLPKEKSDISSTTGKPDSTGSVGTAVEGAIK-----------EVSELLDKLVKAV 82
Query: 2141 AEAAIVAEGVKKDEEVANEQALAAQA----MKSVAEGVKKDEEVA 2181
A + G EV + A A +K +A+G+K+ E A
Sbjct: 83 KTAEGASSGTAAIGEVVADADAAKVADKASVKGIAKGIKEIVEAA 127
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 28.1 bits (62), Expect = 7.2
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 12/87 (13%)
Query: 369 MIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHE 428
+I+G F+GK+ +E ++ + + +VI T
Sbjct: 6 VILGPMFSGKS------TELMRRVRRFQIAQYK---CLVIKYAKDTRYSSSFCT---HDR 53
Query: 429 WSDGILAVSYRQFAMSQNENRKWLIFD 455
+ L + + + D
Sbjct: 54 NTMEALPACLLRDVAQEALGVAVIGID 80
Score = 28.1 bits (62), Expect = 7.2
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 12/87 (13%)
Query: 1809 MIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIVINPKSITMGQLYGQFDAVSHE 1868
+I+G F+GK+ +E ++ + + +VI T
Sbjct: 6 VILGPMFSGKS------TELMRRVRRFQIAQYK---CLVIKYAKDTRYSSSFCT---HDR 53
Query: 1869 WSDGILAVSYRQFAMSQNENRKWLIFD 1895
+ L + + + D
Sbjct: 54 NTMEALPACLLRDVAQEALGVAVIGID 80
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.9 bits (63), Expect = 7.9
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 12/120 (10%)
Query: 1127 EGPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLGKFFKMV-DDAMEAYKKKKREEW 1185
+GP+G GK K +A+ L + G ++++ A+ + E+
Sbjct: 9 DGPSGAGKGTLCKAMAE---AL--------QWHLLDSGAIYRVLALAALHHHVDVASEDA 57
Query: 1186 VMDWPGQTVLCVGSAYWTADVHKAIANHPKGLSHYRDVCNAQINKIVEIVRGKLPPQTRI 1245
++ + S +V + + A VR L + R
Sbjct: 58 LVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRA 117
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 28.9 bits (65), Expect = 8.2
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 23/95 (24%)
Query: 7 GPAGTGKTETTKDLAKAVAKLCIVFNCSDSMDYIGLG-------KFFKGLIATGAWACFD 59
G AG GKT +L VAK + G+G + +I +G D
Sbjct: 75 GGAGVGKTVLIMELINNVAK-----AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKD 129
Query: 60 EFNRIDVEVLSVVAQ-------QILTIQRGVTLGE 87
+++ + V Q + G+T+ E
Sbjct: 130 ATSKVAL----VYGQMNEPPGARARVALTGLTVAE 160
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae
[TaxId: 2188]}
Length = 190
Score = 28.4 bits (62), Expect = 9.0
Identities = 15/150 (10%), Positives = 40/150 (26%), Gaps = 11/150 (7%)
Query: 1809 MIVGLSFAGKTCAYRMLSEALQLIEEWGELGEHKVEIIV---INPKSITMGQLYGQFDAV 1865
++ G+ G T + ++ + L+ +++ + + L D +
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKE-------GVNYKMVSFGSVMFEVAKEENLVSDRDQM 57
Query: 1866 SH-EWSDGILAVSYRQFAMSQNENRKWLIFDGPVDAIWIENMNSVLDDNKKLCLMSGEII 1924
+ +++ + D + L L II
Sbjct: 58 RKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLII 117
Query: 1925 ALAPTTSLIFEPQDLEVASPATITDESMVE 1954
+ T I + + + S +E
Sbjct: 118 VVETTGDEILMRRMSDETRVRDLDTASTIE 147
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 28.6 bits (63), Expect = 9.3
Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 13/174 (7%)
Query: 1338 MFIGPTGTGKSCYITVSILFIKNNSRLRSGFQHFLLKELSIEQWQP---LIMNFSAQTSA 1394
+F G G GK+ + + + + + IEQ + + ++ +++T
Sbjct: 38 LFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKV 97
Query: 1395 NQTQDIIMSKLDKRRKGVYGPPLGKRCVVFVDDVNMPLKEEFGA-QPPIEILRQWLDHWM 1453
T+D++ Y P G+ V +D+V+M + F A +E + + +
Sbjct: 98 EDTRDLL-------DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 150
Query: 1454 WYDRKDVVAVKLIEIQLMCAMGPPSTGNTVTPRFSRHFNQIVINKFDDDTMVTI 1507
+ V ++ L + H + + +
Sbjct: 151 ATTDPQKLPVTILSRCLQFHLKALD--VEQIRHQLEHILNEEHIAHEPRALQLL 202
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 9,866,281
Number of extensions: 494713
Number of successful extensions: 2489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2476
Number of HSP's successfully gapped: 91
Length of query: 2567
Length of database: 2,407,596
Length adjustment: 101
Effective length of query: 2466
Effective length of database: 1,020,866
Effective search space: 2517455556
Effective search space used: 2517455556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.5 bits)