BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12681
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N23|B Chain B, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|D Chain D, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|B Chain B, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|D Chain D, Crystal Structure Of The Sodium-Potassium Pump
Length = 277
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 5 CRQKNFVSLRQEFNPGLPVCKPSLGFRPMPPES----HVDSTLIWFK-QDPNNYKYWTNE 59
C F+ Q + KP+ R PP T I F+ DP +Y+ +
Sbjct: 19 CLAGIFIGTIQVMLLTISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVS 78
Query: 60 LDNFLEKYRDVTKR-----------PGQGQNIVKCDYGVPRPPGKVCDIDMNRFGPCKKE 108
+ FLEKY+D+ ++ P + + + +Y R KVC + G C
Sbjct: 79 IVRFLEKYKDLAQKDDMIFEDCGNVPSELKE--RGEYNNERGERKVCRFRLEWLGNCSGL 136
Query: 109 N--SYSYGKGTPCIFLKLNKIFNWQPE 133
N +Y Y G PC+ +KLN++ ++P+
Sbjct: 137 NDETYGYKDGKPCVIIKLNRVLGFKPK 163
>pdb|3KDP|B Chain B, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|D Chain D, Crystal Structure Of The Sodium-potassium Pump
Length = 286
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 5 CRQKNFVSLRQEFNPGLPVCKPSLGFRPMPPES----HVDSTLIWFK-QDPNNYKYWTNE 59
C F+ Q + KP+ R PP T I F+ DP +Y+ +
Sbjct: 28 CLAGIFIGTIQVMLLTISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVS 87
Query: 60 LDNFLEKYRDVTKR-----------PGQGQNIVKCDYGVPRPPGKVCDIDMNRFGPCKKE 108
+ FLEKY+D+ ++ P + + + +Y R KVC + G C
Sbjct: 88 IVRFLEKYKDLAQKDDMIFEDCGNVPSELKE--RGEYNNERGERKVCRSRLEWLGNCSGL 145
Query: 109 N--SYSYGKGTPCIFLKLNKIFNWQPE 133
N +Y Y G PC+ +KLN++ ++P+
Sbjct: 146 NDETYGYKDGKPCVIIKLNRVLGFKPK 172
>pdb|3A3Y|B Chain B, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 305
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 15/134 (11%)
Query: 23 VCKPSLGFRPMPPESHVDSTLIWFKQDPNNYKYWTNELDNFLEKYRDVTKRPGQ------ 76
V P L P ++ + ++ +P +Y+ + + ++ Y + ++
Sbjct: 73 VAPPGLSHAPYAIKTEISFSI----SNPKSYESFVKSMHKLMDLYNESSQAGNSPFEDCS 128
Query: 77 ---GQNIVKCDYGVPRPPGKVCDIDMNRFGPCK--KENSYSYGKGTPCIFLKLNKIFNWQ 131
I + D + K C C + +Y Y +G PC+ KLN+I +
Sbjct: 129 DTPADYIKRGDLDDSQGQKKACRFSRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFY 188
Query: 132 PEFYNDTNKLPEKM 145
P+ +T LPE++
Sbjct: 189 PKPLKNTTDLPEQL 202
>pdb|2ZXE|B Chain B, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
Length = 305
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 15/134 (11%)
Query: 23 VCKPSLGFRPMPPESHVDSTLIWFKQDPNNYKYWTNELDNFLEKYRDVTKRPGQ------ 76
V P L P ++ + ++ +P +Y+ + + ++ Y + ++
Sbjct: 73 VAPPGLSHAPYAIKTEISFSI----SNPKSYESFVKSMHKLMDLYNESSQAGNSPFEDCS 128
Query: 77 ---GQNIVKCDYGVPRPPGKVCDIDMNRFGPCK--KENSYSYGKGTPCIFLKLNKIFNWQ 131
I + D + K C C + +Y Y +G PC+ KLN+I +
Sbjct: 129 DTPADYIKRGDLDDSQGQKKACRFSRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFY 188
Query: 132 PEFYNDTNKLPEKM 145
P+ +T LPE++
Sbjct: 189 PKPLKNTTDLPEEL 202
>pdb|4HPQ|C Chain C, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
pdb|4HPQ|F Chain F, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
Length = 413
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 51 NNYKYWTNELDNFLEKYRDVTKRPGQGQNIVKCDYGVPRPPGKVCDIDMNRFGPCKKE 108
N+ K+W NE+ + K ++T Q N D+ + R + D +N +K+
Sbjct: 90 NDMKFWQNEITKMMNKLDNITNEIDQQHNSKLGDF-ISRDSSHILDSKLNEIPTIRKQ 146
>pdb|3U1B|A Chain A, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3U1B|B Chain B, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 34/134 (25%)
Query: 22 PVCKPSLG-FRPMPPESH--VDSTLIWFKQDPNNYK---YWTNELDNFLEKYRDVTKRP- 74
P PS G F P +++ TL+ + P N K +W++E N+ EK ++ RP
Sbjct: 136 PALVPSFGEFEPFVDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTKEKELRPN 195
Query: 75 ---------------GQGQNIVKCDYGVPRPP----GKVCDIDMNRFGPCKKENSYSYGK 115
G N ++ +G P P G + I+ +R E S+S
Sbjct: 196 NWISVTNGQATGRVIGGNLNTIQGIWGSPYMPCIQEGDILFIEDSRKDAATIERSFS--- 252
Query: 116 GTPCIFLKLNKIFN 129
FLK+N +F+
Sbjct: 253 -----FLKINGVFD 261
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 56/160 (35%), Gaps = 22/160 (13%)
Query: 20 GLPVCKPSLGFRPMPPESHVDSTLIWFKQDPN-------NYKYWTNE---LDNFLEK--- 66
GL + + F +PP H+ L+ F DP N ++ E LD FL+K
Sbjct: 178 GLQEAEKGVKFLTLPPVLHL--QLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDP 235
Query: 67 -------YRDVTKRPGQGQNIVKCDYGVPRPPGKVCDIDMNRFGPCKKENSYSYGKGTPC 119
V G Y P+ GK C D + C KE + + G
Sbjct: 236 KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHD 295
Query: 120 IFLKLNKIFNWQPEFYNDTNKLPEKMPNDLKNDIKQSISQ 159
L + N Y +KL E + +DI Q + +
Sbjct: 296 DDLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVE 335
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 22/79 (27%)
Query: 57 TNELDNFLEKYRD-VTKRPGQGQNIVKCDYGVPRPP---------------------GKV 94
T L F+ RD + + PG G +V C GV R G V
Sbjct: 198 TQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAV 257
Query: 95 CDIDMNRFGPCKKENSYSY 113
D+ ++R + E Y Y
Sbjct: 258 HDLRLHRVHMVQTECQYVY 276
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 56/160 (35%), Gaps = 22/160 (13%)
Query: 20 GLPVCKPSLGFRPMPPESHVDSTLIWFKQDPN-------NYKYWTNE---LDNFLEK--- 66
GL + + F +PP H+ L+ F DP N ++ E LD FL+K
Sbjct: 347 GLQEAEKGVKFLTLPPVLHL--QLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDP 404
Query: 67 -------YRDVTKRPGQGQNIVKCDYGVPRPPGKVCDIDMNRFGPCKKENSYSYGKGTPC 119
V G Y P+ GK C D + C KE + + G
Sbjct: 405 KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHD 464
Query: 120 IFLKLNKIFNWQPEFYNDTNKLPEKMPNDLKNDIKQSISQ 159
L + N Y +KL E + +DI Q + +
Sbjct: 465 DDLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVE 504
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 22/79 (27%)
Query: 57 TNELDNFLEKYRD-VTKRPGQGQNIVKCDYGVPRPP---------------------GKV 94
T L F+ RD + + PG G +V C GV R G V
Sbjct: 217 TQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAV 276
Query: 95 CDIDMNRFGPCKKENSYSY 113
D+ ++R + E Y Y
Sbjct: 277 HDLRLHRVHMVQTECQYVY 295
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 22/79 (27%)
Query: 57 TNELDNFLEKYRD-VTKRPGQGQNIVKCDYGVPRPP---------------------GKV 94
T L F+ RD + + PG G +V C GV R G V
Sbjct: 201 TQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAV 260
Query: 95 CDIDMNRFGPCKKENSYSY 113
D+ ++R + E Y Y
Sbjct: 261 HDLRLHRVHMVQTECQYVY 279
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 55/160 (34%), Gaps = 22/160 (13%)
Query: 20 GLPVCKPSLGFRPMPPESHVDSTLIWFKQDPN-------NYKYWTNE---LDNFLEK--- 66
GL + + F +PP H+ L F DP N ++ E LD FL+K
Sbjct: 178 GLQEAEKGVKFLTLPPVLHL--QLXRFXYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDP 235
Query: 67 -------YRDVTKRPGQGQNIVKCDYGVPRPPGKVCDIDMNRFGPCKKENSYSYGKGTPC 119
V G Y P+ GK C D + C KE + + G
Sbjct: 236 KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHD 295
Query: 120 IFLKLNKIFNWQPEFYNDTNKLPEKMPNDLKNDIKQSISQ 159
L + N Y +KL E + +DI Q + +
Sbjct: 296 DDLSVRHCTNAYXLVYIRESKLSEVLQAVTDHDIPQQLVE 335
>pdb|3KZS|A Chain A, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.10 A Resolution
pdb|3KZS|B Chain B, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.10 A Resolution
pdb|3KZS|C Chain C, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.10 A Resolution
pdb|3KZS|D Chain D, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.10 A Resolution
Length = 463
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 10 FVSLRQEFNPGLPVCKPSLGFRPMPPESHVDSTLIWFKQDPNNYKYWTNELDNFLEKY 67
FV P PV + +P H ++ L+W D Y YW+ +F Y
Sbjct: 247 FVERSXAXKPXKPVIDGEPIYEEIPHGLHDENELLWKDYDVRRYAYWSVFAGSFGHTY 304
>pdb|3GJZ|A Chain A, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
pdb|3GJZ|B Chain B, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
Length = 336
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 34/134 (25%)
Query: 22 PVCKPSLG-FRPMPPESH--VDSTLIWFKQDPNNYK---YWTNELDNFLEKYRDVTKRP- 74
P PS G F P +++ TL+ + P N K +W++E N+ EK ++ RP
Sbjct: 136 PALVPSFGEFEPFVDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTKEKELRPN 195
Query: 75 ---------------GQGQNIVKCDYGVPRPP----GKVCDIDMNRFGPCKKENSYSYGK 115
G N ++ +G P P G + I+ + E S+S
Sbjct: 196 NWISVTNGQATGRVIGGNLNTIQGIWGSPYXPCIQEGDILFIEDSSKDAATIERSFS--- 252
Query: 116 GTPCIFLKLNKIFN 129
FLK+N +F+
Sbjct: 253 -----FLKINGVFD 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,017,079
Number of Sequences: 62578
Number of extensions: 278672
Number of successful extensions: 791
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 27
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)