Query psy12681
Match_columns 168
No_of_seqs 110 out of 299
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 16:54:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00287 Na_K-ATPase: Sodium / 100.0 4.2E-39 9.1E-44 274.4 10.1 126 1-134 54-192 (289)
2 TIGR01107 Na_K_ATPase_bet Sodi 100.0 4.1E-38 8.8E-43 267.9 10.2 125 1-133 53-191 (289)
3 KOG3927|consensus 100.0 8.2E-37 1.8E-41 260.5 12.6 135 1-139 61-201 (300)
4 PF12487 DUF3703: Protein of u 29.9 42 0.0009 25.2 2.0 29 126-154 80-112 (112)
5 KOG3927|consensus 26.8 51 0.0011 28.8 2.3 43 105-148 138-182 (300)
6 PRK04968 SecY interacting prot 25.7 46 0.00099 27.0 1.7 55 57-139 4-58 (181)
7 cd03475 Rieske_SoxF_SoxL SoxF 23.9 59 0.0013 26.1 2.0 18 111-128 27-45 (171)
8 KOG3222|consensus 23.7 56 0.0012 26.7 1.9 88 40-153 69-173 (195)
9 PF13989 YejG: YejG-like prote 23.2 51 0.0011 24.5 1.4 51 16-66 8-64 (106)
10 PF08109 Antimicrobial14: Lact 22.5 32 0.0007 19.6 0.2 16 55-70 4-19 (31)
11 PF15473 PCNP: PEST, proteolyt 22.2 60 0.0013 25.6 1.7 22 136-157 98-119 (150)
12 PF08458 PH_2: Plant pleckstri 21.6 1.2E+02 0.0027 22.6 3.2 25 42-66 80-105 (110)
13 PF08357 SEFIR: SEFIR domain; 21.2 1.3E+02 0.0028 22.3 3.4 27 41-67 2-28 (150)
14 cd03742 SOCS_Rab40 SOCS (suppr 20.8 79 0.0017 19.7 1.7 15 145-159 28-42 (43)
No 1
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=100.00 E-value=4.2e-39 Score=274.40 Aligned_cols=126 Identities=40% Similarity=0.808 Sum_probs=77.6
Q ss_pred ChhhhHHHhhhhccc-ccCCCcccCCCcceeeCCCCCCCCcceEEEEe-cCCccHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy12681 1 MQAQCRQKNFVSLRQ-EFNPGLPVCKPSLGFRPMPPESHVDSTLIWFK-QDPNNYKYWTNELDNFLEKYRDVTKRPGQGQ 78 (168)
Q Consensus 1 ~f~~~~~~~~~tl~~-~~~~s~~~~~PGL~~rP~~~~~~~~~~~I~f~-~~~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~ 78 (168)
|||+|||+||+||++ +...+.++++|||++||++. . ++++|+|+ +++++|+.|+++|++||++|++..+ .
T Consensus 54 lfa~~m~v~l~tld~~~Pk~~~~~~~PGL~~rP~~~--~-~s~~I~f~~s~~~s~~~yv~~L~~FL~~Y~~~~~-----~ 125 (289)
T PF00287_consen 54 LFAICMWVFLQTLDPDVPKYQDRGSNPGLGFRPNPD--T-ESTLISFNASDPSSYQPYVDRLDEFLKPYNDSSQ-----K 125 (289)
T ss_dssp HHHHHHHHHHHTSSSSS-S-STTS-S--EEESS--T--T---SEEEE-TT-SGGGHHHHHHHHHHHHCC-TTTS------
T ss_pred HHHHHHHHHHHHCCCCCCceecccccceeeecCCCC--c-CcceEEEECCCchhHHHHHHHHHHHHHHhccccc-----c
Confidence 599999999999996 22233348999999999996 2 78999999 9999999999999999999999876 3
Q ss_pred CccCCCCC---------CCCCCCCceeeccCCccCCCC--CCCCccCCCCceEEEEecccCCeeeee
Q psy12681 79 NIVKCDYG---------VPRPPGKVCDIDMNRFGPCKK--ENSYSYGKGTPCIFLKLNKIFNWQPEF 134 (168)
Q Consensus 79 ~~~~C~~~---------~~~~~~~~C~F~~~~lg~Cs~--d~~yGY~~g~PCI~lKLNrI~gw~P~~ 134 (168)
...+|+.+ ....+++||+|++++||+|++ |+.|||++|+|||||||||||||+|++
T Consensus 126 ~~~~C~~g~~~~~~~~~~~~~~~~~C~F~~~~lg~Cs~~~d~~~GY~~g~PCI~lKlNri~gw~P~~ 192 (289)
T PF00287_consen 126 NNENCDPGQYFEQPDFGSPNPPKKACQFDRSWLGPCSGENDPTFGYSSGKPCIFLKLNRIIGWKPEP 192 (289)
T ss_dssp SEE---S-S----SSSSSSSSS--EE---GGGSTTS----SSS----SSS-EEEEEE---BT---S-
T ss_pred ccccCCCcceeecCccccCCCCCcEeEEechhhccCCCCCCCCccccCCCceEEEEcccccCccccc
Confidence 37788743 234678999999999999998 455999999999999999999999997
No 2
>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit. This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.
Probab=100.00 E-value=4.1e-38 Score=267.95 Aligned_cols=125 Identities=26% Similarity=0.552 Sum_probs=104.9
Q ss_pred ChhhhHHHhhhhccc-ccCCCcccCCCcceeeCCCCCCCCcceEEEEe-cCCccHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy12681 1 MQAQCRQKNFVSLRQ-EFNPGLPVCKPSLGFRPMPPESHVDSTLIWFK-QDPNNYKYWTNELDNFLEKYRDVTKRPGQGQ 78 (168)
Q Consensus 1 ~f~~~~~~~~~tl~~-~~~~s~~~~~PGL~~rP~~~~~~~~~~~I~f~-~~~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~ 78 (168)
|||+|||+||+||++ +...+.++++|||++||.. +.++|+|+ +++++|+.|+++|++||++|++..|. ..
T Consensus 53 ~F~~~m~v~l~Tl~~~~Pk~q~~~~~PGL~~rP~~-----~~~eI~f~~~~~~s~~~yv~~l~~FL~~Y~~~~q~---~~ 124 (289)
T TIGR01107 53 IFIGTIQVMLQTISDFTPKYQDRVASPGLTQRPKV-----QKLEISFNVSDPSSYEGYVQNLHKFLKPYNDSAQE---DK 124 (289)
T ss_pred HHHHHHHHHHHHcCCCCCCCCcCCCCCceeeccCC-----CceEEEEeCCChHHHHHHHHHHHHHHHhhchhhcc---cc
Confidence 699999999999996 3344555789999999965 35789999 99999999999999999999986541 22
Q ss_pred CccCCCC----CC------CCCCCCceeeccCCccCCCC--CCCCccCCCCceEEEEecccCCeeee
Q psy12681 79 NIVKCDY----GV------PRPPGKVCDIDMNRFGPCKK--ENSYSYGKGTPCIFLKLNKIFNWQPE 133 (168)
Q Consensus 79 ~~~~C~~----~~------~~~~~~~C~F~~~~lg~Cs~--d~~yGY~~g~PCI~lKLNrI~gw~P~ 133 (168)
+..+|.. .. ...+++||+|++++||+||+ |++|||++|+|||||||||||||+|+
T Consensus 125 ~~~~C~~~~~~~~~~~~~~~~~~~~~C~F~~~~Lg~Cs~~~D~~fGY~~GkPCI~iKLNrIig~~P~ 191 (289)
T TIGR01107 125 NLFDCGDGAEYEQRGPFNAPYGTKKACQFKRDWLGNCSGLNDPTFGYSEGKPCIIIKMNRIIGFKPK 191 (289)
T ss_pred ccccCCccccccccCCccccccccccceecHHhccCCCCCCCCCcCcCCCCCeEEEEeeeeeCcccC
Confidence 3478943 21 22456899999999999998 56699999999999999999999999
No 3
>KOG3927|consensus
Probab=100.00 E-value=8.2e-37 Score=260.49 Aligned_cols=135 Identities=40% Similarity=0.865 Sum_probs=120.8
Q ss_pred ChhhhHHHhhhhccc---ccCCCcccCCCcceeeCCCCCCCCcceEEEEe-cCCccHHHHHHHHHHHHHHhcccCCCCCC
Q psy12681 1 MQAQCRQKNFVSLRQ---EFNPGLPVCKPSLGFRPMPPESHVDSTLIWFK-QDPNNYKYWTNELDNFLEKYRDVTKRPGQ 76 (168)
Q Consensus 1 ~f~~~~~~~~~tl~~---~~~~s~~~~~PGL~~rP~~~~~~~~~~~I~f~-~~~~s~~~yv~~L~~FL~~Y~~~~~~~~~ 76 (168)
+||+|||+||+||++ ++.+| +++|||||||.+.. . ++++|+|+ +++++|++|+++|++||++|++..+.+..
T Consensus 61 lf~~~~~~~~~tidp~~P~~~~~--~~~PGl~~~P~~~~-~-~~~~i~~~~~~~~~~~~~~~~i~~fL~kY~d~~~~~~~ 136 (300)
T KOG3927|consen 61 LFAGCMWFMLQTIDPKVPKYKDS--GANPGLSFRPNPPR-T-DSTLISFNPSDPKSYANYVDRIDDFLKKYNDNGQEPRM 136 (300)
T ss_pred HHHHHHHHHHHhcCCCCCccccc--CCCCceeecCCCCc-C-cceeEEEeCCChhhHHHHHHHHHHHHHhhCcccccccc
Confidence 589999999999997 44455 99999999999973 3 99999999 99999999999999999999998776555
Q ss_pred CCCccCCCCCCCCCCCCceeeccCCccCCC--CCCCCccCCCCceEEEEecccCCeeeeecCCCC
Q psy12681 77 GQNIVKCDYGVPRPPGKVCDIDMNRFGPCK--KENSYSYGKGTPCIFLKLNKIFNWQPEFYNDTN 139 (168)
Q Consensus 77 ~~~~~~C~~~~~~~~~~~C~F~~~~lg~Cs--~d~~yGY~~g~PCI~lKLNrI~gw~P~~y~~~~ 139 (168)
+.+..+|.+.++..+..+|+|+++.|++|+ .+++|||++|+||||||||||+||+|+.|+...
T Consensus 137 ~~~~~~~~~~q~~~~~~~ckfd~~~f~~cs~~~d~~~Gy~~g~Pci~iklNri~G~~Pe~~~~~n 201 (300)
T KOG3927|consen 137 GVNIDNCWFYQPGTPTVACKFDLDGFGNCSGSNDDNFGYSKGQPCIFLKLNRILGWKPELYNRPN 201 (300)
T ss_pred cccCcccccccCCCCCceEEecHHHcCcCccccCCCccccCCCceEEEEeeeecCCccccCCCcC
Confidence 667778888888888889999999999995 578899999999999999999999999998855
No 4
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=29.88 E-value=42 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=21.1
Q ss_pred ccCCeeeeecCCCCCCCC----CCCHHHHHHHh
Q psy12681 126 KIFNWQPEFYNDTNKLPE----KMPNDLKNDIK 154 (168)
Q Consensus 126 rI~gw~P~~y~~~~~lP~----~mP~~Lk~~i~ 154 (168)
-.+||.|..=+...+.|. .+|+||++.++
T Consensus 80 s~~G~~P~GNtG~anV~~f~pmpip~dl~~~l~ 112 (112)
T PF12487_consen 80 SLVGRVPVGNTGGANVSPFKPMPIPEDLQALLK 112 (112)
T ss_pred HHhccCCCCCCCCCCCCCCCCCCCCHHHHHHhC
Confidence 357899998776655544 38899998774
No 5
>KOG3927|consensus
Probab=26.80 E-value=51 Score=28.79 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCCCCCCccCCCCceEEEEecccCCeeeeecCCCC--CCCCCCCHH
Q psy12681 105 CKKENSYSYGKGTPCIFLKLNKIFNWQPEFYNDTN--KLPEKMPND 148 (168)
Q Consensus 105 Cs~d~~yGY~~g~PCI~lKLNrI~gw~P~~y~~~~--~lP~~mP~~ 148 (168)
|..++.|+|..+.||+..|.+ +.+|.+....+.. -.++..|-.
T Consensus 138 ~~~~~~~~~q~~~~~~~ckfd-~~~f~~cs~~~d~~~Gy~~g~Pci 182 (300)
T KOG3927|consen 138 VNIDNCWFYQPGTPTVACKFD-LDGFGNCSGSNDDNFGYSKGQPCI 182 (300)
T ss_pred ccCcccccccCCCCCceEEec-HHHcCcCccccCCCccccCCCceE
Confidence 334667999999999999999 9999999633322 334445543
No 6
>PRK04968 SecY interacting protein Syd; Provisional
Probab=25.72 E-value=46 Score=27.02 Aligned_cols=55 Identities=27% Similarity=0.535 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCccCCCCCCCCCCCCceeeccCCccCCCCCCCCccCCCCceEEEEecccCCeeeeecC
Q psy12681 57 TNELDNFLEKYRDVTKRPGQGQNIVKCDYGVPRPPGKVCDIDMNRFGPCKKENSYSYGKGTPCIFLKLNKIFNWQPEFYN 136 (168)
Q Consensus 57 v~~L~~FL~~Y~~~~~~~~~~~~~~~C~~~~~~~~~~~C~F~~~~lg~Cs~d~~yGY~~g~PCI~lKLNrI~gw~P~~y~ 136 (168)
.++|++|.++|.+.-+. . ...-|++ + +=|.-.+|||.=...-.+-|+|....
T Consensus 4 ~~AL~~f~~ry~~~w~~----~---------------------~g~~P~s-~--~~~g~~SpCi~~~~~~~V~W~P~~~~ 55 (181)
T PRK04968 4 AQALDDFTQRYCDAWQE----E---------------------HGELPRS-E--ELYGVPSPCIIETSEDAVYWQPQPFE 55 (181)
T ss_pred HHHHHHHHHHHHHHHHH----h---------------------cCCCCCC-h--hhhCCCCCcEeccCCceEEEeccccC
Confidence 57899999999885320 0 1112333 2 33445789998888888999998876
Q ss_pred CCC
Q psy12681 137 DTN 139 (168)
Q Consensus 137 ~~~ 139 (168)
...
T Consensus 56 ~~~ 58 (181)
T PRK04968 56 PEG 58 (181)
T ss_pred Ccc
Confidence 543
No 7
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=23.87 E-value=59 Score=26.11 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=14.7
Q ss_pred CccC-CCCceEEEEecccC
Q psy12681 111 YSYG-KGTPCIFLKLNKIF 128 (168)
Q Consensus 111 yGY~-~g~PCI~lKLNrI~ 128 (168)
|-|- ++.||+||||.+-.
T Consensus 27 F~YP~~~~p~~li~lg~~~ 45 (171)
T cd03475 27 FAYPLTNEPCFLLNLGASS 45 (171)
T ss_pred EeCCCCCCCeEEEecCCcc
Confidence 5664 79999999999864
No 8
>KOG3222|consensus
Probab=23.68 E-value=56 Score=26.74 Aligned_cols=88 Identities=27% Similarity=0.526 Sum_probs=52.6
Q ss_pred cceEEEEe---cCCccHHHHHH------HHHHHHHHhcccCCCCCCCCCccCCCCCCCCCCC-CceeeccCCccCCC---
Q psy12681 40 DSTLIWFK---QDPNNYKYWTN------ELDNFLEKYRDVTKRPGQGQNIVKCDYGVPRPPG-KVCDIDMNRFGPCK--- 106 (168)
Q Consensus 40 ~~~~I~f~---~~~~s~~~yv~------~L~~FL~~Y~~~~~~~~~~~~~~~C~~~~~~~~~-~~C~F~~~~lg~Cs--- 106 (168)
|-|-+.|+ .-|.-|-+|-= .|++.|.++++... ...|.++-....+ ++=++ ..|.|.
T Consensus 69 eDT~l~f~al~GlPGpYiKwFLk~lg~egl~~~l~~~~~k~A-------~A~c~f~~~~g~g~~p~~~---F~G~~~G~I 138 (195)
T KOG3222|consen 69 EDTSLCFNALGGLPGPYIKWFLKKLGPEGLHEMLSKFENKSA-------YALCTFGYADGRGAKPVHT---FAGETEGSI 138 (195)
T ss_pred eechhhhhhccCCCcHHHHHHHHHhCcHHHHHHHHhhCCcce-------EEEEEEEEEcCCCCceeEE---EecccCceE
Confidence 34667888 44888887753 48888999988642 3456554322221 22211 124444
Q ss_pred ----CCCCCccCCCCceEEEEecccCCeeeeecCCCCCCCCCCCHHHHHHH
Q psy12681 107 ----KENSYSYGKGTPCIFLKLNKIFNWQPEFYNDTNKLPEKMPNDLKNDI 153 (168)
Q Consensus 107 ----~d~~yGY~~g~PCI~lKLNrI~gw~P~~y~~~~~lP~~mP~~Lk~~i 153 (168)
+++.||++ || |.|+.|..+- .|||.+.|..|
T Consensus 139 Vp~rG~~~fGwd---~i----------FqP~g~~~ty---aEMpk~ekN~i 173 (195)
T KOG3222|consen 139 VPPRGPTDFGWD---PI----------FQPDGYEQTY---AEMPKDEKNAI 173 (195)
T ss_pred cCCCCCCCCCCC---cc----------cCCCccccch---hhCChhHhhhh
Confidence 35667776 43 5677776553 47999888755
No 9
>PF13989 YejG: YejG-like protein
Probab=23.20 E-value=51 Score=24.48 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=29.3
Q ss_pred ccCCCcc--cCCCcceeeCCCCC-CCCcceEEEEe--cC-CccHHHHHHHHHHHHHH
Q psy12681 16 EFNPGLP--VCKPSLGFRPMPPE-SHVDSTLIWFK--QD-PNNYKYWTNELDNFLEK 66 (168)
Q Consensus 16 ~~~~s~~--~~~PGL~~rP~~~~-~~~~~~~I~f~--~~-~~s~~~yv~~L~~FL~~ 66 (168)
.|.+|.| ..--|.-+.|.+.+ .+.+..+|-++ |- -.+--.-.++|.+-|..
T Consensus 8 RLPqsYRWlsG~~G~kVEp~p~~~~~~~n~LigLkLLShdg~~aw~im~~L~~sL~e 64 (106)
T PF13989_consen 8 RLPQSYRWLSGFAGVKVEPIPLNDADEDNDLIGLKLLSHDGESAWQIMQQLSQSLAE 64 (106)
T ss_pred eCCccceeccCCcCceeeecCCcCcCcccceEEEEeeCCCChHHHHHHHHHHHHHHH
Confidence 4455554 55568888777632 34566688888 33 23333445666666643
No 10
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=22.47 E-value=32 Score=19.56 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhccc
Q psy12681 55 YWTNELDNFLEKYRDV 70 (168)
Q Consensus 55 ~yv~~L~~FL~~Y~~~ 70 (168)
.|++.|-+||+-|-..
T Consensus 4 gyiqgipdflkgylhg 19 (31)
T PF08109_consen 4 GYIQGIPDFLKGYLHG 19 (31)
T ss_pred ccccccHHHHHHHHhh
Confidence 5899999999999764
No 11
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=22.22 E-value=60 Score=25.59 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCHHHHHHHhhhc
Q psy12681 136 NDTNKLPEKMPNDLKNDIKQSI 157 (168)
Q Consensus 136 ~~~~~lP~~mP~~Lk~~i~~~~ 157 (168)
.+.++-|++||.+.+..+++..
T Consensus 98 ~d~d~e~eEmP~eakmRMrNiG 119 (150)
T PF15473_consen 98 EDDDSEPEEMPPEAKMRMRNIG 119 (150)
T ss_pred cccccChhhCCHHHHHHHHhcC
Confidence 3467789999999999998864
No 12
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=21.58 E-value=1.2e+02 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.609 Sum_probs=21.9
Q ss_pred eEEEEe-cCCccHHHHHHHHHHHHHH
Q psy12681 42 TLIWFK-QDPNNYKYWTNELDNFLEK 66 (168)
Q Consensus 42 ~~I~f~-~~~~s~~~yv~~L~~FL~~ 66 (168)
-+|.|. .+...|+.|++.|...|..
T Consensus 80 G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 80 GVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred cEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 368999 8889999999999999964
No 13
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=21.18 E-value=1.3e+02 Score=22.32 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=23.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHHHHh
Q psy12681 41 STLIWFKQDPNNYKYWTNELDNFLEKY 67 (168)
Q Consensus 41 ~~~I~f~~~~~s~~~yv~~L~~FL~~Y 67 (168)
..+|.|..|...+..+|..|.+||...
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~ 28 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQN 28 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 368999977788899999999999988
No 14
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=20.78 E-value=79 Score=19.72 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.8
Q ss_pred CCHHHHHHHhhhccC
Q psy12681 145 MPNDLKNDIKQSISQ 159 (168)
Q Consensus 145 mP~~Lk~~i~~~~~~ 159 (168)
+|..||+|+++++-.
T Consensus 28 LP~~Lk~yLkey~~~ 42 (43)
T cd03742 28 LPVSIKSHLKSFAMA 42 (43)
T ss_pred CCHHHHHHHHhcccc
Confidence 899999999988643
Done!