Query psy12681
Match_columns 168
No_of_seqs 110 out of 299
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:54:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdp_B Sodium/potassium-transp 100.0 2.1E-43 7.1E-48 299.1 8.0 141 1-150 32-188 (286)
2 2zxe_B Na+,K+-ATPase beta subu 100.0 1.3E-42 4.3E-47 296.5 9.4 147 1-166 50-213 (305)
3 3ixz_B Potassium-transporting 100.0 1.1E-40 3.9E-45 282.8 11.8 129 1-136 54-195 (290)
4 3sjd_D Golgi to ER traffic pro 22.6 7.1 0.00024 23.8 -1.8 7 124-130 40-46 (46)
5 2ge7_A Nucleocapsid protein; N 16.8 1E+02 0.0036 21.9 3.0 31 40-70 69-105 (108)
6 3ffv_A Protein SYD; membrane, 13.2 79 0.0027 24.5 1.6 28 113-140 34-61 (181)
7 2fcg_F Cationic, antibacterial 12.4 1.9E+02 0.0065 15.4 2.5 20 51-70 3-22 (26)
8 1qqh_A Papillomavirus transcri 12.0 91 0.0031 23.3 1.6 41 2-47 6-57 (144)
9 1sg7_A Putative cation transpo 12.0 81 0.0028 22.0 1.2 20 134-153 22-45 (96)
10 1k8v_A Neuropeptide F; moniezi 11.8 1.8E+02 0.0063 17.0 2.6 22 48-69 15-36 (40)
No 1
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=100.00 E-value=2.1e-43 Score=299.12 Aligned_cols=141 Identities=26% Similarity=0.545 Sum_probs=119.8
Q ss_pred ChhhhHHHhhhhccc---ccCCCcccCCCcceeeCCCCCCCCcceEEEEe-cCCccHHHHHHHHHHHHHHhcccCCCCC-
Q psy12681 1 MQAQCRQKNFVSLRQ---EFNPGLPVCKPSLGFRPMPPESHVDSTLIWFK-QDPNNYKYWTNELDNFLEKYRDVTKRPG- 75 (168)
Q Consensus 1 ~f~~~~~~~~~tl~~---~~~~s~~~~~PGL~~rP~~~~~~~~~~~I~f~-~~~~s~~~yv~~L~~FL~~Y~~~~~~~~- 75 (168)
|||+|||+||+||++ ++.++ +++|||++||++. +++|+|+ +++++|+.|+++|++||++|++..|...
T Consensus 32 lFa~~m~v~l~TLd~~~Pkyqd~--~~~PGL~~~P~~~-----~~eI~f~~sd~~s~~~yv~~L~~FL~~Y~~~~q~~~~ 104 (286)
T 3kdp_B 32 IFIGTIQVMLLTISEFKPTYQDR--VAPPGLTQIPQSQ-----KTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDM 104 (286)
T ss_dssp HHHHHHHGGGSCSCSSSCSCCTT--TCSCCCCBSSCCS-----SSEEECCSSCTTTTHHHHHHHHHHHTTCCTTTSCSTT
T ss_pred HHHHHHHHHHHhCcccCCcccCC--CCCCcceeccCCC-----ceEEEEECCChhhHHHHHHHHHHHHHHhcchhhcccc
Confidence 699999999999996 44444 6999999999984 5789999 9999999999999999999998765310
Q ss_pred --------CCCCccCCCCCCCCCCCCceeeccCCccCCC--CCCCCccCCCCceEEEEecccCCeeeeecCCCCCCCCCC
Q psy12681 76 --------QGQNIVKCDYGVPRPPGKVCDIDMNRFGPCK--KENSYSYGKGTPCIFLKLNKIFNWQPEFYNDTNKLPEKM 145 (168)
Q Consensus 76 --------~~~~~~~C~~~~~~~~~~~C~F~~~~lg~Cs--~d~~yGY~~g~PCI~lKLNrI~gw~P~~y~~~~~lP~~m 145 (168)
.|.-...|++++.+.+++||+|++++||+|+ .|++|||++|+|||||||||||||+|++| .++.|++|
T Consensus 105 ~~~~C~~~~~~~~~~~~~~~~~~~~~~C~F~~~~lg~Csg~~d~~fGY~~g~PCI~lKlNRIig~~P~~~--~~~~~~~~ 182 (286)
T 3kdp_B 105 IFEDCGNVPSELKERGEYNNERGERKVCRSRLEWLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPP--KNESLETY 182 (286)
T ss_dssp TEECCCSSCCCCCCCCCSSSSSSSCCEECCCGGGSTTSCCCCSSSCCCCSSSCCBCBCCCCCBTCCCCCC--CSSSCSSC
T ss_pred cccccccCcccceeccccccCCCCCceeEeccccccCCCCCCCCCCCcCCCCCeEEEEeccccceeeccc--CCCCcccc
Confidence 0122456677777788999999999999999 79999999999999999999999999998 34457899
Q ss_pred CH-HHH
Q psy12681 146 PN-DLK 150 (168)
Q Consensus 146 P~-~Lk 150 (168)
|+ +|+
T Consensus 183 p~~~l~ 188 (286)
T 3kdp_B 183 PVMKYN 188 (286)
T ss_dssp SSSCCT
T ss_pred cchhcc
Confidence 99 777
No 2
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=100.00 E-value=1.3e-42 Score=296.48 Aligned_cols=147 Identities=20% Similarity=0.398 Sum_probs=116.5
Q ss_pred ChhhhHHHhhhhccc-ccCCCcccCCCcceeeCCCCCCCCcceEEEEe-cCCccHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy12681 1 MQAQCRQKNFVSLRQ-EFNPGLPVCKPSLGFRPMPPESHVDSTLIWFK-QDPNNYKYWTNELDNFLEKYRDVTKRPGQGQ 78 (168)
Q Consensus 1 ~f~~~~~~~~~tl~~-~~~~s~~~~~PGL~~rP~~~~~~~~~~~I~f~-~~~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~ 78 (168)
|||+|||+||+||++ +...+.++++|||++||+++ +++|+|+ +++++|+.|+++|++||++|+++.| +.
T Consensus 50 lF~~~m~v~l~tl~~~~Pk~q~~i~~PGL~~~P~~~-----~~~I~f~~~~~~s~~~yv~~l~~FL~~Y~~~~q----~~ 120 (305)
T 2zxe_B 50 IFIGTIQVLLLTLSDFEPKYQDRVAPPGLSHAPYAI-----KTEISFSISNPKSYESFVKSMHKLMDLYNESSQ----AG 120 (305)
T ss_dssp HHHHHHHHHHHTSCSSSCSCCTTTCSCCBCCSSCCS-----SSEEEECTTCGGGTHHHHHHHHHHHGGGCGGGS----CS
T ss_pred HHHHHHHHHHHHccccCCccccCCCCCeeeEecCCC-----CeEEEEeCCChhhHHHHHHHHHHHHHHhcchhh----cc
Confidence 599999999999996 22233346999999999974 7999999 9999999999999999999999865 34
Q ss_pred C--ccCCCC-----------CCCCCCCCceeeccCCccCCCC--CCCCccCCCCceEEEEecccCCeeeeecCCCCCCCC
Q psy12681 79 N--IVKCDY-----------GVPRPPGKVCDIDMNRFGPCKK--ENSYSYGKGTPCIFLKLNKIFNWQPEFYNDTNKLPE 143 (168)
Q Consensus 79 ~--~~~C~~-----------~~~~~~~~~C~F~~~~lg~Cs~--d~~yGY~~g~PCI~lKLNrI~gw~P~~y~~~~~lP~ 143 (168)
+ ..+|+. ...+.+++||+|++++||+|++ |++|||++|+||||||||||+||+|++|++ ++||+
T Consensus 121 ~~~~~~C~~~~~~~~~~g~~~~~~~~~~~C~F~~~~Lg~Cs~~~d~~fGY~~g~PCI~lKlNrI~g~~P~~~~~-~~lP~ 199 (305)
T 2zxe_B 121 NSPFEDCSDTPADYIKRGDLDDSQGQKKACRFSRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYPKPLKN-TTDLP 199 (305)
T ss_dssp TTTEECCCSSCCCCCCCSSSCSSSSSCCEECCCGGGSTTC--------CCCSSSCCCEEEBCCCBTCCCCCCCT-TSCCT
T ss_pred ccccccCCCcccccccccccccCCCCCceeEeechhccCCCCCCCCCCCcCCCCCeEEEEecceecccccCCcc-ccccH
Confidence 4 789984 2345678999999999999997 445999999999999999999999998765 56555
Q ss_pred CCCHHHHHHHhhhccCCCceEEE
Q psy12681 144 KMPNDLKNDIKQSISQNAATYLI 166 (168)
Q Consensus 144 ~mP~~Lk~~i~~~~~~~~~~~~~ 166 (168)
++ |+++++ .+.|||
T Consensus 200 ~~---l~~~~~------~~~I~v 213 (305)
T 2zxe_B 200 EE---LQANYN------QYVLPL 213 (305)
T ss_dssp TT---TTTCCT------TTEEEE
T ss_pred HH---Hhhhhc------cCCCce
Confidence 55 366654 257776
No 3
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=100.00 E-value=1.1e-40 Score=282.83 Aligned_cols=129 Identities=17% Similarity=0.375 Sum_probs=112.3
Q ss_pred ChhhhHHHhhhhccc-ccCCCcccCCCcceeeCCCCCCCCcceEEEEe-cCCccHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy12681 1 MQAQCRQKNFVSLRQ-EFNPGLPVCKPSLGFRPMPPESHVDSTLIWFK-QDPNNYKYWTNELDNFLEKYRDVTKRPGQGQ 78 (168)
Q Consensus 1 ~f~~~~~~~~~tl~~-~~~~s~~~~~PGL~~rP~~~~~~~~~~~I~f~-~~~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~ 78 (168)
|||+|||+||+||++ +...+.++++|||++||++. ++++++|+|+ +++++|+.|+++|++||++|++..| +
T Consensus 54 lFa~~m~v~l~Tld~~~Pkyqd~~~~PGL~~~P~~~--~~~~~~I~f~~sd~~s~~~yv~~l~~FL~~Y~~~~q-----~ 126 (290)
T 3ixz_B 54 IFALCIYVLMRTIDPYTPDYQDQLKSPGVTLRPDVY--GEKGLDISYNVSDSTTWAGLAHTLHRFLAGYSPAAQ-----E 126 (290)
T ss_pred HHHHHHHHHHHhCCCCCCCcccccCCCcceecCCCC--CCcceEEEEeCCCchHHHHHHHHHHHHHHHhCchhc-----c
Confidence 699999999999997 33344458999999999985 5678999999 9999999999999999999999765 3
Q ss_pred CccCCCCCC---------CCCCCCceeeccCCccCCCC--CCCCccCCCCceEEEEecccCCeeeeecC
Q psy12681 79 NIVKCDYGV---------PRPPGKVCDIDMNRFGPCKK--ENSYSYGKGTPCIFLKLNKIFNWQPEFYN 136 (168)
Q Consensus 79 ~~~~C~~~~---------~~~~~~~C~F~~~~lg~Cs~--d~~yGY~~g~PCI~lKLNrI~gw~P~~y~ 136 (168)
+..+|+.++ ++..++||+|++++||+|++ |++|||++|+|||||||||||||+|+.++
T Consensus 127 ~~~~C~~~~~~~q~~~~~~~~~~~~C~F~~~~lg~Csg~~d~~fGY~~g~PCI~iKlNrIig~~P~~~~ 195 (290)
T 3ixz_B 127 GSINCTSEKYFFQESFLAPNHTKFSCKFTADMLQNCSGRPDPTFGFAEGKPCFIIKMNRIVKFLPGNST 195 (290)
T ss_pred CcccCCCccccccccccCCCCCCceeeccccccCcCCCCCCCCCCcCCCCceEEEEeceEEeeecCCCC
Confidence 467898654 22446799999999999997 89999999999999999999999999875
No 4
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=22.62 E-value=7.1 Score=23.82 Aligned_cols=7 Identities=71% Similarity=1.303 Sum_probs=2.9
Q ss_pred ecccCCe
Q psy12681 124 LNKIFNW 130 (168)
Q Consensus 124 LNrI~gw 130 (168)
||+|.||
T Consensus 40 LNkItg~ 46 (46)
T 3sjd_D 40 LNKITGW 46 (46)
T ss_dssp HHHHC--
T ss_pred HHHHhcC
Confidence 5556555
No 5
>2ge7_A Nucleocapsid protein; N protein, coronavirus, IBV N protein, dimerization domain, virus/viral protein/RNA binding protein complex; 2.00A {Infectious bronchitis virus} SCOP: d.254.1.2 PDB: 2ge8_A 2ca1_A
Probab=16.85 E-value=1e+02 Score=21.91 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=23.8
Q ss_pred cceEEEEe------cCCccHHHHHHHHHHHHHHhccc
Q psy12681 40 DSTLIWFK------QDPNNYKYWTNELDNFLEKYRDV 70 (168)
Q Consensus 40 ~~~~I~f~------~~~~s~~~yv~~L~~FL~~Y~~~ 70 (168)
+..+|.|+ .+...+..|++.|++.|.-|.+.
T Consensus 69 d~~~lty~y~~~vpk~dPn~~~~~~~l~~~~~ay~~~ 105 (108)
T 2ge7_A 69 DGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTR 105 (108)
T ss_dssp TEEEEEEEEEEEEETTSTTHHHHHHHHHHHBTCTTCC
T ss_pred CcEEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhhcC
Confidence 45666655 34568999999999999999764
No 6
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=13.20 E-value=79 Score=24.48 Aligned_cols=28 Identities=29% Similarity=0.741 Sum_probs=20.8
Q ss_pred cCCCCceEEEEecccCCeeeeecCCCCC
Q psy12681 113 YGKGTPCIFLKLNKIFNWQPEFYNDTNK 140 (168)
Q Consensus 113 Y~~g~PCI~lKLNrI~gw~P~~y~~~~~ 140 (168)
|.-.+|||.=...-.+-|+|...+...+
T Consensus 34 ~~~~SpC~~~~~d~~V~W~P~~r~~~~~ 61 (181)
T 3ffv_A 34 YGVPSPCIISTTEDAVYWQPQPFTGEQN 61 (181)
T ss_dssp TTSCCTTEEEECSSCEEECCEECCSCSS
T ss_pred cCCCCccEeccCCCcEEEeccccCCccc
Confidence 3446899998777777799998766543
No 7
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=12.39 E-value=1.9e+02 Score=15.41 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHHHHHhccc
Q psy12681 51 NNYKYWTNELDNFLEKYRDV 70 (168)
Q Consensus 51 ~s~~~yv~~L~~FL~~Y~~~ 70 (168)
...+...++|.+|+.+....
T Consensus 3 ~~~kkIgQkIkdFf~~l~pr 22 (26)
T 2fcg_F 3 KEFKRIVQRIKDFLRNLVPR 22 (26)
T ss_dssp CSHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHhcCcc
Confidence 34677889999999876543
No 8
>1qqh_A Papillomavirus transcription factor E2; amphipathic helix, cashew/kidney shape, viral protein; 2.10A {Human papillomavirus type 18} SCOP: b.91.1.1
Probab=11.99 E-value=91 Score=23.27 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=26.0
Q ss_pred hhhhHHHhhhhccc--------ccCCCc---ccCCCcceeeCCCCCCCCcceEEEEe
Q psy12681 2 QAQCRQKNFVSLRQ--------EFNPGL---PVCKPSLGFRPMPPESHVDSTLIWFK 47 (168)
Q Consensus 2 f~~~~~~~~~tl~~--------~~~~s~---~~~~PGL~~rP~~~~~~~~~~~I~f~ 47 (168)
.||-|+.+|++|.+ ||.+.- ..+.|-=.|.=.+ ...++.|+
T Consensus 6 ~AIeM~L~L~SL~~S~y~~E~WTL~dtS~E~~~t~P~~cfKK~g-----~tVeV~fD 57 (144)
T 1qqh_A 6 KAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGG-----QTVQVYFD 57 (144)
T ss_dssp HHHHHHHHHHHHHHSTTTTSCCCTTTTSHHHHTSSSTTSEEEEE-----EEEEEEET
T ss_pred HHHHHHHHHHHHccCcccCCCcchhhCCHHHHcCCCCCCEeeCC-----EEEEEEEC
Confidence 48999999999975 555432 2566654554333 23567777
No 9
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=11.98 E-value=81 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=13.4
Q ss_pred ecCCCCCCCCC----CCHHHHHHH
Q psy12681 134 FYNDTNKLPEK----MPNDLKNDI 153 (168)
Q Consensus 134 ~y~~~~~lP~~----mP~~Lk~~i 153 (168)
+|++.++||+. +|+.-|+..
T Consensus 22 pY~s~~dLP~sVr~~LP~hAQ~Iy 45 (96)
T 1sg7_A 22 PYKTKSDLPESVKHVLPSHAQDIY 45 (96)
T ss_dssp CCSSSTTSCHHHHTTCCSHHHHHH
T ss_pred CCCChhhCCHHHHHhCCHHHHHHH
Confidence 48888887754 666666544
No 10
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=11.79 E-value=1.8e+02 Score=17.03 Aligned_cols=22 Identities=0% Similarity=0.237 Sum_probs=18.1
Q ss_pred cCCccHHHHHHHHHHHHHHhcc
Q psy12681 48 QDPNNYKYWTNELDNFLEKYRD 69 (168)
Q Consensus 48 ~~~~s~~~yv~~L~~FL~~Y~~ 69 (168)
+++.....|++.|+++..-+..
T Consensus 15 ~s~~~l~~YL~~LneYyai~GR 36 (40)
T 1k8v_A 15 DNKAALRDYLRQINEYFAIIGR 36 (40)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhcC
Confidence 4567889999999999887664
Done!