Query psy12681
Match_columns 168
No_of_seqs 110 out of 299
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 16:54:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12681.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12681hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c9wa1 a.271.1.1 (A:149-198) 23.6 18 0.0013 20.9 1.7 20 137-158 29-48 (50)
2 d1mnta_ a.43.1.1 (A:) Mnt repr 17.5 17 0.0012 22.3 0.6 17 145-161 11-27 (66)
3 d2ge7a1 d.254.1.2 (A:8-114) Co 15.8 57 0.0041 21.6 3.1 23 48-70 83-105 (107)
4 d2fiua1 d.58.4.16 (A:1-95) Hyp 13.7 72 0.0052 19.7 3.1 28 43-70 7-35 (95)
5 d2izva1 a.271.1.1 (A:386-429) 13.0 32 0.0024 19.2 1.0 17 145-161 26-42 (44)
6 d1l6ja3 g.14.1.2 (A:216-274) G 12.2 21 0.0015 21.2 -0.1 11 111-121 7-17 (59)
7 d1u5da1 b.55.1.1 (A:108-213) S 11.6 77 0.0056 18.7 2.7 25 43-67 80-105 (106)
8 d1m2da_ c.47.1.11 (A:) Thiored 11.6 27 0.002 22.2 0.3 38 116-161 59-96 (101)
9 d1e8ra_ g.29.1.1 (A:) Endo-1;4 11.1 25 0.0018 20.3 0.1 17 104-120 15-32 (50)
10 d1eaka3 g.14.1.2 (A:217-277) G 10.6 20 0.0015 21.4 -0.6 11 111-121 9-19 (61)
No 1
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.63 E-value=18 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=15.0
Q ss_pred CCCCCCCCCCHHHHHHHhhhcc
Q psy12681 137 DTNKLPEKMPNDLKNDIKQSIS 158 (168)
Q Consensus 137 ~~~~lP~~mP~~Lk~~i~~~~~ 158 (168)
..+.|| +|..||+|+++...
T Consensus 29 ~i~~LP--LP~~Lk~YL~eY~y 48 (50)
T d2c9wa1 29 AIWGLP--LPTRLKDYLEEYKF 48 (50)
T ss_dssp CGGGSS--SCHHHHHHHHTCCC
T ss_pred CcccCC--CCHHHHHHHHHcCC
Confidence 334444 89999999998764
No 2
>d1mnta_ a.43.1.1 (A:) Mnt repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=17.54 E-value=17 Score=22.32 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=14.4
Q ss_pred CCHHHHHHHhhhccCCC
Q psy12681 145 MPNDLKNDIKQSISQNA 161 (168)
Q Consensus 145 mP~~Lk~~i~~~~~~~~ 161 (168)
||++|++.|++.+..|.
T Consensus 11 ~P~~lr~~I~~~Ak~Ng 27 (66)
T d1mnta_ 11 MPMEVREKLKFRAEANG 27 (66)
T ss_dssp CCHHHHHHHHHTHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 89999999999876553
No 3
>d2ge7a1 d.254.1.2 (A:8-114) Coronavirus nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=15.84 E-value=57 Score=21.56 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=19.3
Q ss_pred cCCccHHHHHHHHHHHHHHhccc
Q psy12681 48 QDPNNYKYWTNELDNFLEKYRDV 70 (168)
Q Consensus 48 ~~~~s~~~yv~~L~~FL~~Y~~~ 70 (168)
.+...|..|++.|++.|..|.+.
T Consensus 83 k~dP~~~~~~k~l~~~~d~~~t~ 105 (107)
T d2ge7a1 83 RDDPQFDNYVKICDQCVDGVGTR 105 (107)
T ss_dssp TTSTTHHHHHHHHHHHBTCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhhhccC
Confidence 44578999999999999988764
No 4
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=13.69 E-value=72 Score=19.70 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=24.6
Q ss_pred EEEEe-cCCccHHHHHHHHHHHHHHhccc
Q psy12681 43 LIWFK-QDPNNYKYWTNELDNFLEKYRDV 70 (168)
Q Consensus 43 ~I~f~-~~~~s~~~yv~~L~~FL~~Y~~~ 70 (168)
.+..+ .|+..|+.|.+.....|++|+-.
T Consensus 7 i~~~~i~d~e~~~~Y~~~~~~~~~~~GG~ 35 (95)
T d2fiua1 7 IAQVDVRDSERYKDYVSTAKPAFERFGAN 35 (95)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHcCCE
Confidence 45567 89999999999999999999975
No 5
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.99 E-value=32 Score=19.24 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=13.7
Q ss_pred CCHHHHHHHhhhccCCC
Q psy12681 145 MPNDLKNDIKQSISQNA 161 (168)
Q Consensus 145 mP~~Lk~~i~~~~~~~~ 161 (168)
+|..||+|+++...+.|
T Consensus 26 LP~~Lk~yLkeyhYkq~ 42 (44)
T d2izva1 26 IPSSMKLYLKEYHYKSK 42 (44)
T ss_dssp SCHHHHHHHTSSEEEEC
T ss_pred CCHHHHHHHHhcccccc
Confidence 89999999998765543
No 6
>d1l6ja3 g.14.1.2 (A:216-274) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.20 E-value=21 Score=21.21 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=8.5
Q ss_pred CccCCCCceEE
Q psy12681 111 YSYGKGTPCIF 121 (168)
Q Consensus 111 yGY~~g~PCI~ 121 (168)
.|=+.|.||||
T Consensus 7 ~Gns~G~~C~F 17 (59)
T d1l6ja3 7 FGNADGAACHF 17 (59)
T ss_dssp SSSSTTCBCCS
T ss_pred cCcCCCCceEC
Confidence 56677899995
No 7
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.62 E-value=77 Score=18.73 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEe-cCCccHHHHHHHHHHHHHHh
Q psy12681 43 LIWFK-QDPNNYKYWTNELDNFLEKY 67 (168)
Q Consensus 43 ~I~f~-~~~~s~~~yv~~L~~FL~~Y 67 (168)
.+.|. .+..+...|++.|...++..
T Consensus 80 ~~~f~a~s~~e~~~W~~ai~~~i~~l 105 (106)
T d1u5da1 80 TYEFTATSPAEARDWVDQISFLLKDL 105 (106)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 46788 88899999999999998764
No 8
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=11.60 E-value=27 Score=22.15 Aligned_cols=38 Identities=13% Similarity=0.283 Sum_probs=25.3
Q ss_pred CCceEEEEecccCCeeeeecCCCCCCCCCCCHHHHHHHhhhccCCC
Q psy12681 116 GTPCIFLKLNKIFNWQPEFYNDTNKLPEKMPNDLKNDIKQSISQNA 161 (168)
Q Consensus 116 g~PCI~lKLNrI~gw~P~~y~~~~~lP~~mP~~Lk~~i~~~~~~~~ 161 (168)
..|-|.|--+. ..|...+ |+++++.|.+||.+....++
T Consensus 59 ~gP~v~i~P~~------~~Y~~v~--~e~v~~Iv~~hl~~g~~ve~ 96 (101)
T d1m2da_ 59 MGPVVVVYPDG------VWYGQVK--PEDVDEIVEKHLKGGEPVER 96 (101)
T ss_dssp GCSCEEEETTT------EEECSCC--GGGHHHHHHHTTTTSCCCGG
T ss_pred CCceEEEcCCc------cEEecCC--HHHHHHHHHHHHHCCcCchH
Confidence 33777773222 2576665 78899999999888665443
No 9
>d1e8ra_ g.29.1.1 (A:) Endo-1;4-beta-xylanase A CBDX {Pseudomonas fluorescens, subsp. cellulosa [TaxId: 294]}
Probab=11.12 E-value=25 Score=20.26 Aligned_cols=17 Identities=24% Similarity=0.681 Sum_probs=14.1
Q ss_pred CCCC-CCCCccCCCCceE
Q psy12681 104 PCKK-ENSYSYGKGTPCI 120 (168)
Q Consensus 104 ~Cs~-d~~yGY~~g~PCI 120 (168)
-|.. +..||+..++-||
T Consensus 15 lC~n~~sGWGwEN~qSCI 32 (50)
T d1e8ra_ 15 LCVTTTNGWGWEDQRSCI 32 (50)
T ss_dssp BCSTTCSSEEEETTEEEE
T ss_pred eeccCCCccccccCCcee
Confidence 3875 5679999999998
No 10
>d1eaka3 g.14.1.2 (A:217-277) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.58 E-value=20 Score=21.43 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=8.7
Q ss_pred CccCCCCceEE
Q psy12681 111 YSYGKGTPCIF 121 (168)
Q Consensus 111 yGY~~g~PCI~ 121 (168)
+|=+.|.||||
T Consensus 9 ~GNs~G~~C~F 19 (61)
T d1eaka3 9 YGNADGEYCKF 19 (61)
T ss_dssp SGGGTTSBCCS
T ss_pred cccCCCCceEC
Confidence 56678999995
Done!