RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12681
         (168 letters)



>gnl|CDD|215838 pfam00287, Na_K-ATPase, Sodium / potassium ATPase beta chain. 
          Length = 289

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 14/123 (11%)

Query: 26  PSLGFRPMPPESHVDSTLIWF-KQDPNNYKYWTNELDNFLEKYRDVTKRPGQGQN----- 79
           P L  RP           I F   DP +++ + + L+ FLE Y D +K+ G  +N     
Sbjct: 80  PGLMIRPKV----YKGLEISFNVSDPKSWQEYVHTLNEFLEPYND-SKQSGNFENCTPGK 134

Query: 80  -IVKCDYGVPRPPGKVCDIDMNRFGPCKKEN--SYSYGKGTPCIFLKLNKIFNWQPEFYN 136
              +  +G P    K C  +    G C   N  ++ Y +G PC+ +K+N+I  ++PE   
Sbjct: 135 YFDQGPFGAPNGEKKACQFNREWLGNCSGLNDPTFGYSEGKPCVLIKMNRIIGFKPEPPK 194

Query: 137 DTN 139
           + N
Sbjct: 195 NYN 197


>gnl|CDD|162204 TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPase beta subunit.
           This model describes the Na+/K+ ATPase beta subunit in
           eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium
           pump) is intimately associated with the plasma membrane.
           It couples the energy released by the hydrolysis of ATP
           to extrude 3 Na+ ions, with the concomitant uptake of
           2K+ ions, against their ionic gradients [Transport and
           binding proteins, Cations and iron carrying compounds].
          Length = 289

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 15/96 (15%)

Query: 49  DPNNYKYWTNELDNFLEKYRDVTKRPGQGQNIVKC----------DYGVPRPPGKVCDID 98
           DP++Y+ +   L  FL+ Y D  +   + +N+  C           +  P    K C   
Sbjct: 98  DPSSYEGYVQNLHKFLKPYNDSAQ---EDKNLFDCGDGAEYEQRGPFNAPYGTKKACQFK 154

Query: 99  MNRFGPCK--KENSYSYGKGTPCIFLKLNKIFNWQP 132
            +  G C    + ++ Y +G PCI +K+N+I  ++P
Sbjct: 155 RDWLGNCSGLNDPTFGYSEGKPCIIIKMNRIIGFKP 190


>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
           modified GGDEF domain and a DHH domain [Signal
           transduction mechanisms].
          Length = 655

 Score = 29.2 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 124 LNKIFNWQPEFYNDTNKLPEKMPNDLKNDIKQSISQNAATYLIYF 168
            +KIFN      + +  +PE +    +ND KQ I  N   Y +YF
Sbjct: 104 ASKIFNKNEIGESLSELIPEILKQLARNDEKQYIKINEKKYDVYF 148


>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family.  This model
           describes the MGT (macroside glycosyltransferase)
           subfamily of the UDP-glucuronosyltransferase family.
           Members include a number of glucosyl transferases for
           macrolide antibiotic inactivation, but also include
           transferases of glucose-related sugars for macrolide
           antibiotic production [Cellular processes, Toxin
           production and resistance].
          Length = 392

 Score = 27.7 bits (62), Expect = 3.3
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 73  RPGQGQNIVKCDYGVPR---PPGKVCDIDMNRF-GPC---KKENS--YSYGKGTPCIFLK 123
            P +  N+V      P+   P G+  D D   F GPC   +KE+      G G P + + 
Sbjct: 177 APRRDLNLVYT----PKAFQPAGETFD-DSFTFVGPCIGDRKEDGSWERPGDGRPVVLIS 231

Query: 124 LNKIFNWQPEFYN 136
           L  +FN QP FY 
Sbjct: 232 LGTVFNNQPSFYR 244


>gnl|CDD|223384 COG0307, RibC, Riboflavin synthase alpha chain [Coenzyme
           metabolism].
          Length = 204

 Score = 27.2 bits (61), Expect = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 38  HVDST--LIWFKQDPNNYKYWTNELDNFLEKY 67
           HVD T  ++  ++D N  ++W       L KY
Sbjct: 99  HVDGTGEIVKIEKDGNAVRFWFKAPPEELAKY 130


>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
           dual-specificity MAP kinase kinases.  Protein kinases
           (PKs), MAP kinase kinase(MAPKK) subfamily, fungal
           Pek1-like proteins, catalytic (c) domain. PKs catalyze
           the transfer of the gamma-phosphoryl group from ATP to
           serine/threonine or tyrosine residues on protein
           substrates. The MAPKK subfamily is part of a larger
           superfamily that includes the catalytic domains of other
           protein serine/threonine kinases, protein tyrosine
           kinases, RIO kinases, aminoglycoside phosphotransferase,
           choline kinase, and phosphoinositide 3-kinase. The
           mitogen-activated protein (MAP) kinase signaling
           pathways are important mediators of cellular responses
           to extracellular signals. The pathways involve a triple
           kinase core cascade comprising of the MAP kinase (MAPK),
           which is phosphorylated and activated by a MAPK kinase
           (MAPKK or MKK), which itself is phosphorylated and
           activated by a MAPK kinase kinase (MAPKKK or MKKK).
           Members of this group include the MAPKKs Pek1/Skh1 from
           Schizosaccharomyces pombe and MKK2 from Saccharomyces
           cerevisiae, and related proteins. Both fission yeast
           Pek1 and baker's yeast MKK2 are components of the cell
           integrity MAPK pathway. In fission yeast, Pek1
           phosphorylates and activates the MAPK Pmk1/Spm1 and is
           regulated by the MAPKKK Mkh1. In baker's yeast, the
           pathway involves the MAPK Slt2, the MAPKKs MKK1 and
           MKK2, and the MAPKKK Bck1. The cell integrity MAPK
           cascade is activated by multiple stress conditions, and
           is essential  in cell wall construction, morphogenesis,
           cytokinesis, and ion homeostasis.
          Length = 287

 Score = 26.6 bits (59), Expect = 6.7
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 47  KQDPNNYKYWTNELDNFLEK--YRDVTKRPG 75
           K +P N   W+ E  +F+++   +D T+RP 
Sbjct: 229 KDEPGNGIKWSEEFKDFIKQCLEKDPTRRPT 259


>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional.
          Length = 420

 Score = 26.7 bits (59), Expect = 7.2
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 58  NELDNFLEKYRDVTKRPGQGQNIVKCDYGVPRPPGKVCDIDMNRFGPCKKENSYSYG 114
           NEL+NF +KY++    P + + I+    G          ID  R      E  Y   
Sbjct: 202 NELNNFFDKYKEHLYPPLKYRRILIESLGD--------GIDTARVQCKVCEREYGSN 250


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,548,102
Number of extensions: 749815
Number of successful extensions: 586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 583
Number of HSP's successfully gapped: 13
Length of query: 168
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 78
Effective length of database: 6,945,742
Effective search space: 541767876
Effective search space used: 541767876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)