RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12681
(168 letters)
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_B* 3b8e_B*
Length = 305
Score = 112 bits (281), Expect = 7e-31
Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 17/140 (12%)
Query: 26 PSLGFRPMPPESHVDSTLIWFK-QDPNNYKYWTNELDNFLEKYRDVTKRPGQ-------- 76
P L P T I F +P +Y+ + + ++ Y + ++
Sbjct: 76 PGLSHAPYA-----IKTEISFSISNPKSYESFVKSMHKLMDLYNESSQAGNSPFEDCSDT 130
Query: 77 -GQNIVKCDYGVPRPPGKVCDIDMNRFGPCK--KENSYSYGKGTPCIFLKLNKIFNWQPE 133
I + D + K C C + +Y Y +G PC+ KLN+I + P+
Sbjct: 131 PADYIKRGDLDDSQGQKKACRFSRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYPK 190
Query: 134 FYNDTNKLPEKMPNDLKNDI 153
+T LPE++ + +
Sbjct: 191 PLKNTTDLPEELQANYNQYV 210
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB:
2xzb_B
Length = 290
Score = 103 bits (257), Expect = 2e-27
Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 7/151 (4%)
Query: 10 FVSLRQEFNPGLPVCKPSLGFRPMPPESHVDSTLIWFK-QDPNNYKYWTNELDNFLEKYR 68
+ + P S G P I + D + + L FL Y
Sbjct: 62 LMRTIDPYTPDYQDQLKSPGVTLRPDVYGEKGLDISYNVSDSTTWAGLAHTLHRFLAGYS 121
Query: 69 DVTKRP----GQGQNIVKCDYGVPRPPGKVCDIDMNRFGPCK--KENSYSYGKGTPCIFL 122
+ + + + P C + C + ++ + +G PC +
Sbjct: 122 PAAQEGSINCTSEKYFFQESFLAPNHTKFSCKFTADMLQNCSGRPDPTFGFAEGKPCFII 181
Query: 123 KLNKIFNWQPEFYNDTNKLPEKMPNDLKNDI 153
K+N+I + P +
Sbjct: 182 KMNRIVKFLPGNSTAPRVDCAFLDQPRDGPP 212
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical,
heterotrimeric membrane protein complex, ATP- hydrolase,
ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa}
PDB: 3n2f_B* 3n23_B*
Length = 286
Score = 101 bits (253), Expect = 5e-27
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 26 PSLGFRPMPPESHVDSTLIWFK-QDPNNYKYWTNELDNFLEKYRDVTKRPG--------- 75
P L P T I F+ DP +Y+ + + FLEKY+D+ ++
Sbjct: 58 PGLTQIPQS-----QKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNV 112
Query: 76 QGQNIVKCDYGVPRPPGKVCDIDMNRFGPC--KKENSYSYGKGTPCIFLKLNKIFNWQPE 133
+ + +Y R KVC + G C + +Y Y G PC+ +KLN++ ++P+
Sbjct: 113 PSELKERGEYNNERGERKVCRSRLEWLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPK 172
Query: 134 FYNDTNKLPEKMPNDLKNDI 153
+ + + +
Sbjct: 173 PPKNESLETYPVMKYNPYVL 192
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima} SCOP:
d.143.1.1
Length = 230
Score = 27.2 bits (61), Expect = 2.7
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 40 DSTLIWFKQDPNNYKYWTNELDNFLEKYRDVTKRPGQ 76
D+ + K + + + +L + L+KYR+V +
Sbjct: 190 DTFRLRKKGEIFDKDVYRRDLGDPLKKYREVLELCRS 226
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 27.1 bits (59), Expect = 3.6
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 119 CIFLKLNKIFNWQPEFYNDTNKLPEKMPNDLKNDIKQSI 157
+ LK + + + ++ + KN IK +
Sbjct: 62 ALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNA 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 3.7
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 63/163 (38%)
Query: 13 LRQEFNPGLPVCKPSLGF----RPM-PPE------SHVDSTLIWFKQDPNNYKYWTN--- 58
L+++FN LP +P+ GF P P E +V S + +P+ +
Sbjct: 33 LQEQFNKILP--EPTEGFAADDEPTTPAELVGKFLGYVSSLV-----EPSKVGQFDQVLN 85
Query: 59 -ELDNFLEKY---RDV-----------TKRPGQGQNIVKCDYG----VPRPPGKVCDIDM 99
L F Y D+ + + ++K RP K + +
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 100 NR------------FGPCKKENSYSYGKGTPCIFLK-LNKIFN 129
R FG G+G + + L ++
Sbjct: 146 FRAVGEGNAQLVAIFG----------GQGNTDDYFEELRDLYQ 178
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein;
2.50A {Mus musculus} SCOP: h.4.16.1
Length = 96
Score = 25.8 bits (56), Expect = 4.3
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 51 NNYKYWTNELDNFLEKY 67
N +EL+NF +++
Sbjct: 78 NKAVQLESELENFSKQF 94
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Length = 799
Score = 25.9 bits (56), Expect = 9.1
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 52 NYKYWTNELDNFLEKYR 68
N +WTNEL N L +
Sbjct: 1 NVNHWTNELKNCL-HFD 16
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.451
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,599,092
Number of extensions: 142405
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 11
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)