RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12681
         (168 letters)



>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
           C virus (HCV), different isolates [TaxId: 11103]}
          Length = 299

 Score = 28.3 bits (63), Expect = 0.45
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 10/54 (18%)

Query: 11  VSLRQEFN-PGLPVCKPSLGFRP------MPPESHVDSTLIWFKQDPNNYKYWT 57
           V LR   N PGLPVC+  L F           ++H    L   KQ   N+ Y  
Sbjct: 186 VRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHF---LSQTKQSGENFPYLV 236


>d2atra1 d.108.1.1 (A:1-137) Probable acetyltransferase SP0256
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 137

 Score = 24.7 bits (53), Expect = 4.3
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 2/49 (4%)

Query: 1   MQAQCRQKNFVSLRQEFNPGLPVCKPSLGFRPMPPESHVDSTLIWFKQD 49
                ++   V L  E          S+GF  +         +IW  ++
Sbjct: 91  ALGNFKEAYQVQLATEETEKNVGFYRSMGFEILSTYDCT--GMIWINRE 137


>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 861

 Score = 25.2 bits (53), Expect = 5.5
 Identities = 6/38 (15%), Positives = 14/38 (36%)

Query: 120 IFLKLNKIFNWQPEFYNDTNKLPEKMPNDLKNDIKQSI 157
           + LK   +     +      +   ++  + KN IK + 
Sbjct: 63  LTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNA 100


>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 876

 Score = 25.1 bits (53), Expect = 5.9
 Identities = 4/38 (10%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 120 IFLKLNKIFNWQPEFYNDTNKLPEKMPNDLKNDIKQSI 157
           + +K N + +  P+      +    +  + + ++K  +
Sbjct: 59  LQIK-NSLTSKDPDIKAQYQQRWLAIDANARREVKNYV 95


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
            chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 24.4 bits (52), Expect = 8.8
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 15   QEFNPGLPVCKPSLGFRPMPP 35
            ++F   L V +P +  R +  
Sbjct: 1052 RDFGESLLVYRPPIDTRSVKE 1072


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 682,411
Number of extensions: 32907
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 17
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)