Query psy12682
Match_columns 755
No_of_seqs 213 out of 1165
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 16:55:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 100.0 6E-101 1E-105 914.4 37.3 474 265-750 4-605 (707)
2 KOG3595|consensus 100.0 7.5E-36 1.6E-40 373.7 23.8 226 1-230 1170-1395(1395)
3 COG5245 DYN1 Dynein, heavy cha 100.0 3.8E-33 8.3E-38 322.2 31.1 520 3-600 2548-3097(3164)
4 PF12781 AAA_9: ATP-binding dy 100.0 1.9E-33 4.1E-38 288.0 10.9 129 2-132 100-228 (228)
5 COG5271 MDN1 AAA ATPase contai 97.1 0.004 8.7E-08 77.0 12.3 169 374-559 1541-1744(4600)
6 PF12781 AAA_9: ATP-binding dy 96.8 0.0028 6.1E-08 65.6 7.3 130 364-504 21-163 (228)
7 TIGR02640 gas_vesic_GvpN gas v 96.5 0.024 5.1E-07 60.1 11.6 116 376-494 21-186 (262)
8 PHA02244 ATPase-like protein 95.1 0.16 3.4E-06 56.0 11.0 117 376-495 119-263 (383)
9 COG5271 MDN1 AAA ATPase contai 92.5 0.36 7.9E-06 61.0 8.3 101 371-474 883-1009(4600)
10 PF12774 AAA_6: Hydrolytic ATP 92.5 0.76 1.6E-05 47.7 9.7 112 380-494 36-168 (231)
11 PF07728 AAA_5: AAA domain (dy 92.4 0.1 2.2E-06 49.2 3.0 104 378-484 1-138 (139)
12 TIGR01650 PD_CobS cobaltochela 86.3 3.2 7E-05 45.2 8.9 113 376-491 64-218 (327)
13 KOG1808|consensus 79.7 3.7 8E-05 53.7 7.0 100 372-474 436-561 (1856)
14 PRK07003 DNA polymerase III su 77.6 35 0.00076 41.5 13.7 123 378-505 40-192 (830)
15 PHA02544 44 clamp loader, smal 72.9 37 0.0008 36.6 11.8 109 378-494 45-161 (316)
16 PF13177 DNA_pol3_delta2: DNA 70.6 45 0.00098 32.4 10.7 110 379-493 22-161 (162)
17 PRK07003 DNA polymerase III su 67.5 1E+02 0.0022 37.6 14.4 66 21-87 145-210 (830)
18 PRK12323 DNA polymerase III su 64.3 77 0.0017 38.0 12.5 122 378-504 40-196 (700)
19 PF14532 Sigma54_activ_2: Sigm 63.8 31 0.00066 32.3 7.8 90 375-474 20-110 (138)
20 PRK14958 DNA polymerase III su 63.3 88 0.0019 36.5 12.8 134 367-505 29-192 (509)
21 PRK14960 DNA polymerase III su 54.8 1.5E+02 0.0033 35.7 12.8 133 367-504 28-190 (702)
22 KOG1899|consensus 54.3 31 0.00067 40.1 6.7 45 50-100 153-197 (861)
23 cd00009 AAA The AAA+ (ATPases 54.2 1.6E+02 0.0035 26.3 11.0 110 376-485 19-143 (151)
24 PRK05707 DNA polymerase III su 53.0 91 0.002 34.2 10.2 72 418-494 89-166 (328)
25 PRK08451 DNA polymerase III su 52.1 1.8E+02 0.0038 34.3 12.7 111 379-494 39-177 (535)
26 PRK05563 DNA polymerase III su 52.0 2E+02 0.0043 34.1 13.4 112 378-494 40-179 (559)
27 PF00004 AAA: ATPase family as 51.5 1.5E+02 0.0032 26.6 10.0 106 379-487 1-126 (132)
28 PRK08058 DNA polymerase III su 51.5 1.6E+02 0.0035 32.1 11.9 111 379-495 31-171 (329)
29 PF13173 AAA_14: AAA domain 50.7 1E+02 0.0022 28.3 8.8 89 379-474 5-99 (128)
30 PLN03025 replication factor C 48.9 1.7E+02 0.0036 31.8 11.4 120 379-503 37-170 (319)
31 PF03028 Dynein_heavy: Dynein 46.6 28 0.0006 42.4 5.4 55 21-77 199-253 (707)
32 PRK13342 recombination factor 45.6 2.6E+02 0.0057 31.5 12.8 108 377-494 37-152 (413)
33 KOG2264|consensus 45.5 76 0.0017 36.6 7.9 45 59-103 81-126 (907)
34 PRK14964 DNA polymerase III su 45.4 1.7E+02 0.0038 33.9 11.3 123 378-505 37-189 (491)
35 PRK14949 DNA polymerase III su 45.1 2.7E+02 0.0058 34.9 13.1 121 379-504 41-191 (944)
36 KOG0978|consensus 45.0 1.3E+02 0.0028 36.1 10.2 92 67-158 500-595 (698)
37 PF03961 DUF342: Protein of un 44.9 1.3E+02 0.0028 34.6 10.1 78 71-149 328-405 (451)
38 TIGR00678 holB DNA polymerase 44.1 3.2E+02 0.0069 26.8 12.0 111 379-494 17-156 (188)
39 PRK07994 DNA polymerase III su 43.6 2.1E+02 0.0045 34.5 11.8 121 379-504 41-191 (647)
40 PF07106 TBPIP: Tat binding pr 43.5 1.3E+02 0.0027 29.5 8.6 76 73-153 75-155 (169)
41 TIGR00635 ruvB Holliday juncti 41.0 2.6E+02 0.0056 29.8 11.4 114 377-494 31-160 (305)
42 PRK14956 DNA polymerase III su 41.0 2.4E+02 0.0052 32.7 11.3 122 378-504 42-193 (484)
43 PRK06871 DNA polymerase III su 40.9 45 0.00097 36.5 5.4 56 434-494 111-167 (325)
44 PF09403 FadA: Adhesion protei 39.8 1.9E+02 0.0042 27.1 8.5 93 47-166 12-105 (126)
45 PRK14951 DNA polymerase III su 39.7 2.5E+02 0.0055 33.6 11.7 122 379-505 41-197 (618)
46 PRK05564 DNA polymerase III su 39.3 3.5E+02 0.0075 29.1 12.1 112 378-494 28-153 (313)
47 cd04192 GT_2_like_e Subfamily 39.3 1.3E+02 0.0029 29.7 8.4 71 379-451 31-105 (229)
48 cd02510 pp-GalNAc-T pp-GalNAc- 38.8 1.5E+02 0.0033 31.4 9.1 73 378-454 32-109 (299)
49 PRK07764 DNA polymerase III su 38.7 4.3E+02 0.0093 32.9 13.8 123 378-505 39-193 (824)
50 PF03962 Mnd1: Mnd1 family; I 38.1 2.4E+02 0.0053 28.2 9.7 64 74-138 66-129 (188)
51 cd01452 VWA_26S_proteasome_sub 37.8 59 0.0013 32.6 5.2 40 378-417 110-149 (187)
52 PRK00080 ruvB Holliday junctio 37.4 2.8E+02 0.0061 30.1 11.0 125 376-503 51-192 (328)
53 PF12774 AAA_6: Hydrolytic ATP 36.9 3.3E+02 0.0071 28.2 10.8 105 8-191 117-224 (231)
54 PRK14969 DNA polymerase III su 36.8 2.8E+02 0.0061 32.6 11.4 123 378-505 40-192 (527)
55 PF07989 Microtub_assoc: Micro 36.5 2.6E+02 0.0057 23.6 8.8 67 73-145 3-69 (75)
56 PRK08485 DNA polymerase III su 36.4 3.1E+02 0.0067 28.0 10.0 95 387-489 11-109 (206)
57 PRK00440 rfc replication facto 35.1 3.7E+02 0.008 28.6 11.5 112 378-494 40-162 (319)
58 PRK04132 replication factor C 35.0 2.2E+02 0.0047 35.4 10.4 111 389-504 579-702 (846)
59 PF02403 Seryl_tRNA_N: Seryl-t 35.0 3.3E+02 0.0071 24.3 9.5 58 73-134 32-89 (108)
60 PRK04195 replication factor C 34.6 3.9E+02 0.0085 30.8 12.1 109 376-494 39-161 (482)
61 PF09602 PhaP_Bmeg: Polyhydrox 34.6 2.5E+02 0.0053 27.6 8.6 54 56-110 28-81 (165)
62 PRK14961 DNA polymerase III su 34.5 4E+02 0.0087 29.4 11.8 112 378-494 40-179 (363)
63 cd04196 GT_2_like_d Subfamily 34.2 2.1E+02 0.0046 27.9 8.8 70 378-452 29-103 (214)
64 PRK03992 proteasome-activating 34.0 3.2E+02 0.007 30.6 11.0 125 377-504 166-314 (389)
65 PRK08691 DNA polymerase III su 33.8 3.4E+02 0.0073 33.0 11.4 123 378-505 40-192 (709)
66 PRK07764 DNA polymerase III su 33.7 4.5E+02 0.0097 32.8 12.8 62 22-85 147-209 (824)
67 PRK14952 DNA polymerase III su 33.5 5.7E+02 0.012 30.4 13.3 121 379-504 38-190 (584)
68 COG0598 CorA Mg2+ and Co2+ tra 32.7 5.5E+02 0.012 27.9 12.3 49 29-77 109-158 (322)
69 PRK06645 DNA polymerase III su 31.8 4.4E+02 0.0095 30.8 11.8 122 378-504 45-200 (507)
70 PF05524 PEP-utilisers_N: PEP- 31.7 2.4E+02 0.0052 25.8 8.0 50 74-123 32-88 (123)
71 PHA02244 ATPase-like protein 29.5 95 0.0021 34.7 5.6 52 12-64 208-269 (383)
72 PF09789 DUF2353: Uncharacteri 29.5 2.9E+02 0.0062 30.2 9.0 48 112-159 126-173 (319)
73 PRK07940 DNA polymerase III su 29.4 5.2E+02 0.011 29.1 11.6 111 379-494 39-177 (394)
74 KOG0250|consensus 29.4 1.2E+03 0.027 29.6 15.2 121 46-167 651-786 (1074)
75 PRK14971 DNA polymerase III su 29.0 5.1E+02 0.011 31.1 12.0 82 418-504 104-193 (614)
76 PRK06090 DNA polymerase III su 28.5 1.5E+02 0.0032 32.5 6.8 58 432-494 110-168 (319)
77 PRK14965 DNA polymerase III su 28.5 7E+02 0.015 29.6 13.0 121 379-504 41-191 (576)
78 cd02520 Glucosylceramide_synth 28.5 2.9E+02 0.0063 27.0 8.6 70 377-450 31-108 (196)
79 PF12325 TMF_TATA_bd: TATA ele 28.3 4.9E+02 0.011 24.2 9.2 81 73-157 26-117 (120)
80 PRK08769 DNA polymerase III su 28.1 1.6E+02 0.0035 32.2 7.0 59 432-495 115-174 (319)
81 PRK14963 DNA polymerase III su 27.8 6E+02 0.013 29.7 12.1 122 379-504 39-188 (504)
82 cd06435 CESA_NdvC_like NdvC_li 27.7 2.6E+02 0.0056 28.1 8.3 72 378-452 30-108 (236)
83 PRK10884 SH3 domain-containing 27.4 1.4E+02 0.003 30.5 5.9 35 70-104 93-127 (206)
84 PF00535 Glycos_transf_2: Glyc 26.7 3.1E+02 0.0067 25.0 8.1 71 379-455 30-105 (169)
85 PRK09111 DNA polymerase III su 25.7 5.9E+02 0.013 30.4 11.7 122 378-504 48-204 (598)
86 PF07851 TMPIT: TMPIT-like pro 25.4 1.5E+02 0.0033 32.4 6.2 30 69-98 3-32 (330)
87 PF04156 IncA: IncA protein; 25.0 5.6E+02 0.012 25.3 9.9 7 147-153 162-168 (191)
88 TIGR02397 dnaX_nterm DNA polym 24.6 6.9E+02 0.015 27.0 11.5 113 378-495 38-178 (355)
89 PRK12402 replication factor C 24.2 6.4E+02 0.014 27.0 11.1 112 378-494 38-185 (337)
90 PRK07133 DNA polymerase III su 24.2 6.4E+02 0.014 30.9 11.6 120 379-503 43-189 (725)
91 PF05546 She9_MDM33: She9 / Md 23.9 7.3E+02 0.016 25.3 10.1 94 92-189 6-100 (207)
92 PF05266 DUF724: Protein of un 23.8 6.4E+02 0.014 25.3 9.9 29 129-157 159-187 (190)
93 KOG3769|consensus 23.7 9.5E+02 0.021 26.0 15.3 85 326-429 188-295 (333)
94 PRK14957 DNA polymerase III su 23.5 7.7E+02 0.017 29.1 11.9 123 378-505 40-192 (546)
95 PRK14962 DNA polymerase III su 23.4 7.4E+02 0.016 28.7 11.6 122 379-504 39-189 (472)
96 PF09340 NuA4: Histone acetylt 23.4 1.4E+02 0.003 25.6 4.3 40 73-113 5-44 (80)
97 PRK11608 pspF phage shock prot 23.3 6.2E+02 0.013 27.5 10.6 99 375-473 28-150 (326)
98 PRK00409 recombination and DNA 23.2 4.5E+02 0.0098 32.5 10.4 15 121-135 579-593 (782)
99 cd06439 CESA_like_1 CESA_like_ 23.0 3.8E+02 0.0083 27.1 8.6 66 379-452 63-133 (251)
100 TIGR02974 phageshock_pspF psp 22.9 6.7E+02 0.015 27.3 10.8 96 375-473 21-143 (329)
101 cd04184 GT2_RfbC_Mx_like Myxoc 22.6 5.3E+02 0.012 24.8 9.3 70 378-453 33-108 (202)
102 TIGR02902 spore_lonB ATP-depen 22.4 3.6E+02 0.0078 31.6 9.0 33 22-54 230-262 (531)
103 PRK05431 seryl-tRNA synthetase 22.3 4.1E+02 0.009 30.2 9.2 63 74-147 32-94 (425)
104 cd04187 DPM1_like_bac Bacteria 22.2 4.3E+02 0.0093 25.1 8.4 67 378-449 31-101 (181)
105 cd04185 GT_2_like_b Subfamily 22.1 4.2E+02 0.0092 25.7 8.4 73 378-454 28-105 (202)
106 PRK11637 AmiB activator; Provi 22.1 6.3E+02 0.014 28.6 10.8 21 74-94 44-64 (428)
107 cd04195 GT2_AmsE_like GT2_AmsE 21.8 5.3E+02 0.012 24.8 9.1 65 378-449 31-101 (201)
108 PRK05022 anaerobic nitric oxid 21.6 6.6E+02 0.014 29.2 11.0 101 373-473 207-331 (509)
109 PF04011 LemA: LemA family; I 21.6 2.1E+02 0.0045 28.5 6.0 82 76-157 43-146 (186)
110 PRK05917 DNA polymerase III su 21.4 2.4E+02 0.0053 30.4 6.7 57 433-494 98-155 (290)
111 PHA02562 46 endonuclease subun 21.4 9.7E+02 0.021 27.9 12.6 50 119-168 299-348 (562)
112 PF04568 IATP: Mitochondrial A 20.8 1.6E+02 0.0036 26.4 4.4 34 67-100 66-99 (100)
113 PHA00097 K protein K 20.4 49 0.0011 25.3 0.8 33 76-108 18-50 (56)
114 TIGR02640 gas_vesic_GvpN gas v 20.2 2.8E+02 0.006 29.1 6.9 49 17-65 143-195 (262)
115 KOG3091|consensus 20.1 5.4E+02 0.012 29.7 9.2 143 55-215 347-489 (508)
116 PF14712 Snapin_Pallidin: Snap 20.0 5.7E+02 0.012 22.0 9.0 77 67-143 8-88 (92)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=6.1e-101 Score=914.42 Aligned_cols=474 Identities=42% Similarity=0.814 Sum_probs=351.1
Q ss_pred CCCCCC-CCCHHhHHHHHhhhcCcchhchhHHHhhCHHhHHHhhcCCCCCCCCCCCchhhhhhHHHHHHHHHhhccccch
Q psy12682 265 HKNPTT-WMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVV 343 (755)
Q Consensus 265 ~~~p~~-wl~~~~w~~i~~L~~l~~f~~l~~~i~~~~~~W~~~~~~~~p~~~~lP~~~~~~l~~fqklllir~lRpdrl~ 343 (755)
.+||.+ ||++++|.+|+.|+++|.|.+|.++|..+.++|++|+++..||..++|..|...+++|||+||+||+||||+.
T Consensus 4 ~~~p~~~wl~~~~w~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~~~~pe~~~~P~~~~~~l~~fqklllir~lRpDrl~ 83 (707)
T PF03028_consen 4 IPNPIPSWLSDEQWQNICALSKLPSFKGLCESIESNPEEWKQWFESDSPEEEPLPSPWEENLTPFQKLLLIRALRPDRLI 83 (707)
T ss_dssp -GGGTTTS-HHHHHHHHHHHHC-GGGSSHHHHHHHTHHHHHHHC-SS-SS-----HHHHHHHHHHHHHHHHHHH-CCCHH
T ss_pred CCCCCcCcCCHHHHHHHHHHhCCcchHHHHHHHHhCHHHHHHHHcCCCcccccCChhhhhcccHHHHHHHHHHhCccHhH
Confidence 457765 9999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHhCCCccCCCccchhhhhccCCCCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHH
Q psy12682 344 PAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKL 423 (755)
Q Consensus 344 ~a~~~~v~~~lG~~f~~~~~~~l~~~~~~s~~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~ 423 (755)
.++++||..+||..|++++++|++++|.+|++++|+||+++||+||+..|.++|+++++.++++.+||||+||+..|+++
T Consensus 84 ~~~~~~v~~~lg~~~~~~~~~~l~~~~~~s~~~~Pil~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~~~~a~~~ 163 (707)
T PF03028_consen 84 AAMRKFVSSVLGSRFVEPPPFDLESIYEESSPTTPILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQGPEAEKA 163 (707)
T ss_dssp HHHHHHHHHHH-TTTTS-----HHHHHHCTTTTC-EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHHHHHHHHH
T ss_pred HHHHHHHHHHcCchhhcCCCCCHHHHHHhcCCCCceEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999984346899999999999999999
Q ss_pred HHHHHhcCCeEEecccccccchhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCccchHHHHHHH
Q psy12682 424 INDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRS 503 (755)
Q Consensus 424 I~~a~~~G~WVlLqN~HL~~swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~glk~nl~~~ 503 (755)
|++|+++|+||+||||||+++||+.|+++++.+.. +.|++|||||||+|++.||++|||+|+|+++|||+|+|+||.++
T Consensus 164 l~~a~~~G~Wv~L~N~HL~~~wl~~Le~~l~~~~~-~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~E~p~gik~~l~~~ 242 (707)
T PF03028_consen 164 LKEAAKEGHWVLLQNCHLAPSWLPQLEKKLESLSP-EIHPNFRLFLTSEPSPSFPISLLQSSIKVTYEPPPGIKANLLRT 242 (707)
T ss_dssp HHHHHHHTSEEEEETGGGGCCCHHCHHHHHHC-SS-TTSTT-EEEEEEESSTTS-HHHHHCSEEEEE---SSHHHHHHHH
T ss_pred HHHHhcCCeEEEcccchhHHHHHHHHHHHHhcccc-ccccceEEEEEecCcccCCHHHHHcccceeeCChhHHHHHHHHH
Confidence 99999999999999999999999999999998865 78999999999999999999999999999999999999999999
Q ss_pred hcCCCCCChhhhhhcCChhhHHHHHHHHHHHHHhHHHHhhhCCCccccccccChhhHHHHHHHHHHHHhhc--cCC----
Q psy12682 504 YLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQY--SEA---- 577 (755)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~k~l~f~L~~fHavl~eR~~fgplGwn~~Y~Fn~sDl~~s~~~l~~~l~~~--~~i---- 577 (755)
|.+ +. ++.++.|.++.+|++++|+||||||||+||++|||+|||++||||++||.+|++++.++++.. +.|
T Consensus 243 ~~~--~~-~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~~~ipw~~ 319 (707)
T PF03028_consen 243 YNS--IS-QDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESSPESIPWDA 319 (707)
T ss_dssp HCC-----SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCSCCCTTHHH
T ss_pred HHh--hh-hhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHHHHHHhhccccCCcHHH
Confidence 986 33 356777778889999999999999999999999999999999999999999999999999986 333
Q ss_pred ----------C---------------------------------------------------------------------
Q psy12682 578 ----------G--------------------------------------------------------------------- 578 (755)
Q Consensus 578 ----------G--------------------------------------------------------------------- 578 (755)
|
T Consensus 320 l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~~i~~lp~~~~p~~~GL~~ 399 (707)
T PF03028_consen 320 LRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQLSPDSGSYSIPDSNSLEDYIEWIEQLPDEDPPEWFGLPP 399 (707)
T ss_dssp HHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-EEET-TTTEE----SSHHHHHHHHCTS-SS--CCCCTS-T
T ss_pred HHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhhcccCCCCccCCccccHHHHHHHHHhCCCCCCccccCCCc
Confidence 2
Q ss_pred -------------------------CC--CCCCCChHHHHHHHHHHHHHhCCCCCChHHHhhhCC-CCccchhHHHHHHH
Q psy12682 579 -------------------------GS--AGDAKSTEDLIIRVTSDILQKLPPNFNTVQALEKYP-TMYSQSMNTVLVQE 630 (755)
Q Consensus 579 -------------------------~~--~~~~~~~~~~v~~~~~~il~~lP~~~~~~~~~~~~~-~~~~~~l~~vl~qE 630 (755)
.. ++.+.+.++.+.+++.++++++|..++.+.+..+++ ....+|+++|+.||
T Consensus 400 na~~~~~~~~s~~ll~~l~~l~~~~~~~~~~~~~s~~~~~~~~i~~l~~~lp~~~~~~~~~~~~~~~~~~~Pl~~fl~qE 479 (707)
T PF03028_consen 400 NAEISLQQQESRELLSSLLSLQPRESSSSGGSSKSREEQVLSLIKELLEKLPQLFPIEEVKSKRPAENSNDPLNRFLEQE 479 (707)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCCTTT----------HHHHCT-----------------------------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhcccccccccccccccchhHHHHHHHHHHHHhhccCCHHHHhccCCccccCCceeeeeHHH
Confidence 01 122344677888999999999999999988877664 45688999999999
Q ss_pred HHHHHHHHHHHhhh----------hccccHhHHHHHHhhhcCCCCcccccccCCCCCChHHHHHHHHHHHHHHhHhHhhh
Q psy12682 631 MGRFNVLLTTIRNS----------LIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVII 700 (755)
Q Consensus 631 ~~r~n~ll~~i~~s----------~~~ms~~le~~~~~l~~~~VP~~W~~~~y~s~k~L~sw~~dl~~R~~~~~~W~~~~ 700 (755)
+++||+||+.||+| .++||+++++++++|..|+||..|.+.+|||.++|++|++||.+|++|+++|
T Consensus 480 ~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~Rv~~l~~w---- 555 (707)
T PF03028_consen 480 IERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSYPSPKPLSSWLQDLIKRVEQLQRW---- 555 (707)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S---SS--HHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCCCCCCCHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999 7799999999999999999999999999999999999999999999999999
Q ss_pred hccC-CCCccccceecCcccchhHHHHHHHHhhhhh---ccccceEEeeeceee
Q psy12682 701 TYQS-GSPEFDVKTHQSGQWFTKHIEVVITDPMSTH---LISRLCIQRDIGYYD 750 (755)
Q Consensus 701 ~~~~-g~P~~~~~~wl~gff~Pq~flta~~Q~~ar~---~ld~~~l~~~~~~~~ 750 (755)
... |.|.+ |||||||||+|||||++|++||+ |+|++.+.++++..+
T Consensus 556 -~~~~~~p~~---~wLs~ff~P~aFLtAlrQ~~AR~~~~~ld~L~l~~~v~~~~ 605 (707)
T PF03028_consen 556 -ASNSGQPKS---FWLSGFFNPQAFLTALRQEYARKNKIPLDQLTLSFEVTSSE 605 (707)
T ss_dssp -HH----------B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE-----
T ss_pred -HhccCCceE---EecccccChHHHHHHHHHHHHHhcCcCchhcceeEEEEecc
Confidence 887 99999 99999999999999999999995 999999999998644
No 2
>KOG3595|consensus
Probab=100.00 E-value=7.5e-36 Score=373.74 Aligned_cols=226 Identities=57% Similarity=0.920 Sum_probs=221.9
Q ss_pred CCceEeeCCeEEEEeCCeeeeeCCCceEEEEeCCCCCCCChhhhhceEEEEeEeChhhHHHHHHHHHHhhhcccHHHHHH
Q psy12682 1 MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKN 80 (755)
Q Consensus 1 ~k~~~~~gg~~~I~igd~~id~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~~r~ 80 (755)
.|++++.||+..+++||++++++++||+|++|+++||||.|++++++++|||++|.+++++|+|+.++..|+|+++++|.
T Consensus 1170 ~~~~~~~g~~~~~~~gd~~~~~~~~f~~~~~t~~~~~~~~p~~~~~~~~v~f~~t~~~l~~qll~~v~~~e~~~~~~~~~ 1249 (1395)
T KOG3595|consen 1170 LKETFKQGGRVLIKLGDKEIDLNPDFRLYITTKLRNPHYLPELSARVTLVNFTVTPSGLEDQLLGSVVAIERPDLEEERS 1249 (1395)
T ss_pred ccceeeccCeEeeecCceeeecCCCeeEEEeecccCcccChhhhhceeEEEeEechhHHHHHHHHHHHHHhcchHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHh
Q psy12682 81 QLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHST 160 (755)
Q Consensus 81 ~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~s 160 (755)
.++++.++.+.+++++|+.+|+.|+.++|++++|++++.+|+++|.++. |++|+.+++.++.+|+++|+.|+|+|.|++
T Consensus 1250 ~l~~~~~~~~~~lk~le~~lL~~l~~s~~~~l~~~~~~~~l~~~K~~~~-i~~k~~e~~~~e~~i~~~r~~y~p~a~~~~ 1328 (1395)
T KOG3595|consen 1250 DLIKLQAEIKRQLKELEDRLLERLSSSEGNILEDDELIVTLESSKVEAA-IKEKLEEAEETEKEIDAAREQYRPLAIHSS 1328 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHhHh
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccccHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q psy12682 161 VLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLL 230 (755)
Q Consensus 161 ~lyf~l~~L~~i~~mYqfSL~~f~~lf~~~i~~~~~~~~~~~r~~~L~~~~t~~vy~~vsrsLf~~~kll 230 (755)
.+||.+++|+.++||||||+++|+.+|..++.. .++..+|+..|++++|+.+|+++|||||++||++
T Consensus 1329 ~l~~~~~~l~~i~~myq~sl~~f~~~f~~~~~~---~~~~~~r~~~l~~~~~~~v~~~~~r~l~e~dkl~ 1395 (1395)
T KOG3595|consen 1329 ILYFSISDLANIHPMYQYSLKWFLNLFHVVIER---SESLSKRLANLIDSLTYSVYCNVSRGLFEKDKLL 1395 (1395)
T ss_pred hhheehhhccccChHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHhHHHHHHHHHHHhhhhcccC
Confidence 999999999999999999999999999999998 6788999999999999999999999999999974
No 3
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.8e-33 Score=322.19 Aligned_cols=520 Identities=14% Similarity=0.083 Sum_probs=370.9
Q ss_pred ceEeeCCeEEEEeCCeeeeeCCCceEEEEeCCCCCCCChhhhhceEEEEeEeChhhHHHHHHHHHHhhhcccHHHHHHHH
Q psy12682 3 QIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQL 82 (755)
Q Consensus 3 ~~~~~gg~~~I~igd~~id~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~~r~~L 82 (755)
+++..+|+..+.||+.+|+.+-.|++|.++..+.-..+.-...++.+|||+....|+|.|+++.+++.+.|++..++..|
T Consensus 2548 ef~s~~~eV~v~i~~~eI~~S~~~~vf~~se~~Sgdm~~~~~k~l~~v~Fvs~v~~~ET~i~d~~~~~~~~~lf~~~~~l 2627 (3164)
T COG5245 2548 EFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQLIQVMFVSKVLGCETEIPDALEKLVSGPLFVHEKAL 2627 (3164)
T ss_pred HHhcCCceEEEEECCCeeEEecceeEEEEeecCCCchhHHHHHHhHhhheehhhhhhhhhhhHHHHhhhccchhhhHHHH
Confidence 44577899999999999999999999999999987777778899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhHH
Q psy12682 83 IVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVL 162 (755)
Q Consensus 83 ~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~s~l 162 (755)
....+.++.+|+.|+..+|+.|.++.||++++|++.-+|.++|+.+.+|+++..|+++...++++..++|....+|.-.+
T Consensus 2628 ~~lk~~~~l~L~~L~~~ll~~L~~s~~nm~~tDEI~vll~NlKk~~~~Ie~~~sEs~ei~~riD~L~~eY~~svk~~~sI 2707 (3164)
T COG5245 2628 NALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEEESESMEIEDRIDALKSEYNASVKRLESI 2707 (3164)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcccccHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHhh
Q psy12682 163 FFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFK 242 (755)
Q Consensus 163 yf~l~~L~~i~~mYqfSL~~f~~lf~~~i~~~~~~~~~~~r~~~L~~~~t~~vy~~vsrsLf~~~kllf~fll~~~i~~~ 242 (755)
+-.++.....++||.+|..+|...|.+.... +...-.-.+.....+-.-||.+|+-.|.+.+-+.....
T Consensus 2708 ~v~~~~F~~~~~~y~~si~~~~s~f~k~~~~-----------KS~~~~a~R~~l~~~~w~L~~edr~~F~~~ld~~f~~~ 2776 (3164)
T COG5245 2708 RVEIAMFDEKALMYNKSICELSSEFEKWRRM-----------KSKYLCAIRYMLMSSEWILDHEDRSGFIHRLDVSFLLR 2776 (3164)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhheeecchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998744 22223333444445555677777777777766543211
Q ss_pred c---------CCCCHHHHH-HHhhcCCCCCCCCCCCCCCCCHHhHHHHHhhhcCcchhchhHHHhhCHHhHHHhhcCCCC
Q psy12682 243 A---------ETISMENWM-FLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQP 312 (755)
Q Consensus 243 ~---------g~i~~~e~~-~ll~g~~~~~~~~~~p~~wl~~~~w~~i~~L~~l~~f~~l~~~i~~~~~~W~~~~~~~~p 312 (755)
. -.....++. .-+.|...+..+... .+-.......++..+..|.-...
T Consensus 2777 ~~~~~~~ll~~~~~~~~l~~~~l~~~~v~s~s~dr----~~~~~~~~~~h~~~~~~~~t~~t------------------ 2834 (3164)
T COG5245 2777 TKRFVSTLLEDKNYRQVLSSCSLYGNDVISHSCDR----FDRDVYRALKHQMDNRTHSTILT------------------ 2834 (3164)
T ss_pred HHHHHHHHHhcccHhHhhhhhhhcccccccccccc----ccHHHHHHhhhhhhhhhheeeeh------------------
Confidence 0 000001110 111221111111100 00000000000000000000000
Q ss_pred CCCCCCCchhhhhhHHHHHHHHHhhccccchHHHHHHHHHHhCCCccCCCccchhhhhc-cCCCCccEEEecCCCCChHH
Q psy12682 313 QDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYN-DSVCTVPLIFLLTPGADPTA 391 (755)
Q Consensus 313 ~~~~lP~~~~~~l~~fqklllir~lRpdrl~~a~~~~v~~~lG~~f~~~~~~~l~~~~~-~s~~~tPii~ils~g~DP~~ 391 (755)
+...+++|.--... |-. ...|..+.-|. .+++..+.. ++..+.|+|.
T Consensus 2835 --------~nS~~n~~k~~~~~-----d~w---~~af~Ve~s~~------~y~f~~~~~~~i~g~~plI~---------- 2882 (3164)
T COG5245 2835 --------SNSKTNPYKEYTYN-----DSW---AEAFEVEDSGD------LYKFEEGLLELIVGHAPLIY---------- 2882 (3164)
T ss_pred --------hhcccChHHHHHHH-----HHH---hhhhhhcCCcc------hHHHHHHHHHhhhccchHHH----------
Confidence 00111111100000 000 01111111111 223444432 3444555432
Q ss_pred HHHHHHHhcCCCCCCceEEe-cCCCc-hHHHHHHHHHHHhcCCeEEecccccccchhHH-HHHHHhhhCCCCCCCCceEE
Q psy12682 392 VLLKFADDMGFGGSKFSALS-LGQGQ-GPIAVKLINDGLKKGDWVLLQNCHLAKSWMPV-LEKMCESLSPETTHPDFRLW 468 (755)
Q Consensus 392 ~i~~lA~~~~~~~~~l~~iS-LG~gq-~~~A~~~I~~a~~~G~WVlLqN~HL~~swl~~-Le~ile~l~~~~~h~~FRLw 468 (755)
++++.. .....|. +|+.+ +..|...+..+..+|.|++++|+||+.+|..+ +++.++...+.+.|.+|+-+
T Consensus 2883 ----~~k~s~---E~~~~v~~lgS~Ene~ya~~~~~~S~~e~~w~~v~nI~lS~~w~k~y~~~~v~~~kaS~~~~k~k~~ 2955 (3164)
T COG5245 2883 ----AHKKSL---ENERNVDRLGSKENEVYAVLNSLFSRKEKSWFEVYNISLSFGWFKRYVEDVVYPIKASRVCGKVKNM 2955 (3164)
T ss_pred ----HHHhhh---hhhhhhhhhcchhhhHHHHHHHHhhccCCceEEEEeeEeecHHHHhhhHhhcchhHHHHHHhhhhhe
Confidence 232221 1333455 88875 46999999999999999999999999999988 56777766666777777666
Q ss_pred EEe-CCCCCCcHHHHhhceEeccCCccchHHHHHHHhcCCCCCChhhhhhcCChhhHHHHHHHHHHHHHhHHHHhhhCCC
Q psy12682 469 LTS-YPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPL 547 (755)
Q Consensus 469 Lts-~p~~~fP~~lLq~s~Kv~~Epp~glk~nl~~~~~~~~~~~~~~~~~~~~~~~~k~l~f~L~~fHavl~eR~~fgpl 547 (755)
+|| ...+.+|+.+|+.+-.++++.-+|++.++..++..++.. ....+..--++.|.|+|+||.+.+|-.+||.
T Consensus 2956 ~t~~~~~d~lp~qlL~~~dsfv~~~~p~~~~~~~dL~e~~~~~------~~~t~v~~~~~~f~Lsw~ha~va~v~~~~p~ 3029 (3164)
T COG5245 2956 WTSMVDADMLPIQLLIAIDSFVSSTYPETGCGYADLVEIDRYP------FDYTLVIACDDAFYLSWEHAAVASVISAGPK 3029 (3164)
T ss_pred eeeeeccccccHHHHHHhhhhhhccCCcccccHHHHHhcCccc------ccceeeeeehhHHHHHHHHHHHHHHhhcccc
Confidence 666 677789999999999999999999999999998653322 1112222336889999999999999999999
Q ss_pred ccccccccChhhHHHHHHHHHHHHhhc--cCC--C---------CCCCCC--CChHHHHHHHHHHHHH
Q psy12682 548 GWNIQYQFNETDLKISLVQLKMFLDQY--SEA--G---------GSAGDA--KSTEDLIIRVTSDILQ 600 (755)
Q Consensus 548 Gwn~~Y~Fn~sDl~~s~~~l~~~l~~~--~~i--G---------~~~~~~--~~~~~~v~~~~~~il~ 600 (755)
|||.+|.|+|+||..+...|.+.+-.+ +++ | .+|+.. .++-.+|.++|+.+..
T Consensus 3030 ~~~e~~Yf~D~df~f~T~~L~NIl~~nhln~~~wg~~rDlI~tIvyG~K~s~~~D~~vvdK~c~~~~a 3097 (3164)
T COG5245 3030 ENNEEIYFGDKDFEFKTHLLKNILFLNHLNARKWGNNRDLIFTIVYGKKHSLMEDSKVVDKYCRGYGA 3097 (3164)
T ss_pred cCCCceeeCcchHHHHHHHHHHHHhccccccccccchhhheeEeeecCccchhhhHHHHHHHHHHhcc
Confidence 999999999999999999999887654 333 4 567763 3455677777776653
No 4
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=1.9e-33 Score=288.03 Aligned_cols=129 Identities=56% Similarity=0.871 Sum_probs=116.7
Q ss_pred CceEeeCCeEEEEeCCeeeeeCCCceEEEEeCCCCCCCChhhhhceEEEEeEeChhhHHHHHHHHHHhhhcccHHHHHHH
Q psy12682 2 KQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQ 81 (755)
Q Consensus 2 k~~~~~gg~~~I~igd~~id~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~~r~~ 81 (755)
|+++++| .+|++||+.|||||+|||||+|+++||||+|+++++||+||||+|++|||+|+|+.+|+.|+|+||++|.+
T Consensus 100 k~~~~~g--~~i~igd~~v~~~~~FrL~L~T~~~~p~~~pe~~s~vtviNFtvt~~gLe~qll~~vv~~e~PeLe~~r~~ 177 (228)
T PF12781_consen 100 KNIIKSG--KFIKIGDKEVDYNPNFRLYLTTKLPNPHYPPEVSSKVTVINFTVTQEGLEDQLLSIVVKHERPELEEQRNE 177 (228)
T ss_dssp TT-EE-S--SEEESSSSEEE--SS-EEEEEESSTTSHHHHHHHHCSEEEE----CHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chhccCC--ceEEecCeEEEeeccceEEEeecCCCCCCChhhhceeeEEEEEecHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 6777766 48999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHH
Q psy12682 82 LIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQ 132 (755)
Q Consensus 82 L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~ 132 (755)
|+++.++++.+|+++|++||+.|++++|+||||++||++|+.+|++|.+|+
T Consensus 178 L~~~~~~~k~~L~~lEd~lL~~Ls~s~g~iLed~~Li~~L~~sK~~a~~Ie 228 (228)
T PF12781_consen 178 LLKEIAENKIQLKELEDQLLELLSNSEGNILEDEELIETLESSKKTAAEIE 228 (228)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHCCCTSSCCCCHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999985
No 5
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.09 E-value=0.004 Score=77.03 Aligned_cols=169 Identities=22% Similarity=0.394 Sum_probs=113.1
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCC-------------c--hH--HHHHHHHHHHhcCCeEEe
Q psy12682 374 VCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQG-------------Q--GP--IAVKLINDGLKKGDWVLL 436 (755)
Q Consensus 374 ~~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~g-------------q--~~--~A~~~I~~a~~~G~WVlL 436 (755)
.-..|+++=-|||+--|+.|..+|++.| +++..|-|..- + |+ .-+.-.-.||++|+||+|
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG---~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlL 1617 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTG---KKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLL 1617 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhc---CceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEe
Confidence 3457999999999999999999999997 47877766431 1 22 224556789999999999
Q ss_pred cccccccch-hHHHHHHHhhhC---------CCCCCCCceEEEEeCCCC------CCcHHHHhhceEeccCC--ccchHH
Q psy12682 437 QNCHLAKSW-MPVLEKMCESLS---------PETTHPDFRLWLTSYPSN------LFPVSVLQNGVKITNEP--PKGLRA 498 (755)
Q Consensus 437 qN~HL~~sw-l~~Le~ile~l~---------~~~~h~~FRLwLts~p~~------~fP~~lLq~s~Kv~~Ep--p~glk~ 498 (755)
.-..||..- +..|...+..-. .-..|||||+|-+-.|.. .+|-+.+.+=..|..+. ...+-.
T Consensus 1618 DEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~ 1697 (4600)
T COG5271 1618 DEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITH 1697 (4600)
T ss_pred ehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchHHH
Confidence 999999753 333444443211 124699999999987754 39999998877777664 334444
Q ss_pred HHHHHhcCCCCCChhhhhhcCChhhHHHHHHHHHHHHHhHHHHhhhCCCccccccccChhh
Q psy12682 499 NINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETD 559 (755)
Q Consensus 499 nl~~~~~~~~~~~~~~~~~~~~~~~~k~l~f~L~~fHavl~eR~~fgplGwn~~Y~Fn~sD 559 (755)
.....|.+ + ++++. -++.=..+-+.-=+..|..||..| .|++||-.|
T Consensus 1698 Ia~~~yp~--v-~~d~~---------~kiik~ms~lqd~i~k~~~~g~~g--sPwefnlrd 1744 (4600)
T COG5271 1698 IANKMYPQ--V-NEDWR---------LKIIKFMSRLQDNIEKDISFGSFG--SPWEFNLRD 1744 (4600)
T ss_pred HHHhhCCc--c-ChHHH---------HHHHHHHHHHHHhhhhhhcccCCC--CCeEEehHH
Confidence 44444543 2 22221 122222334455677888999877 488888755
No 6
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.83 E-value=0.0028 Score=65.56 Aligned_cols=130 Identities=22% Similarity=0.341 Sum_probs=81.4
Q ss_pred cchhhhh-ccCCCCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHHhcCCeEEeccc--c
Q psy12682 364 FDIVSSY-NDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNC--H 440 (755)
Q Consensus 364 ~~l~~~~-~~s~~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~~~G~WVlLqN~--H 440 (755)
+.++.+. ...+...|+ +| ||.....++.++.. .+++.++++++.. -.+.|+.|++.|.-|+++|+ +
T Consensus 21 ~siENa~i~~~~~r~PL-iI-----DPq~qa~~wi~~~~--~~~l~v~~~~~~~---~~~~le~air~G~~llIe~v~e~ 89 (228)
T PF12781_consen 21 LSIENAIILKNSRRWPL-II-----DPQGQANKWIKNMY--KNDLEVTSFSDSN---FLKQLENAIRFGKPLLIENVGES 89 (228)
T ss_dssp HHHHHHHHCCC-SSEEE-EE-----STTTCHHHHHHHHC--CCCEEEEETTSTC---HHHHHHHHHHCT-EEEEC-GCSC
T ss_pred hHHhhHHHHhhcCCCce-EE-----CCchHHHHHHHHhh--hhcccccccchHh---HHHHHHHHHHcCCeeeecccccc
Confidence 4455544 234457886 33 89888888887763 3578999998653 35689999999999999998 4
Q ss_pred cccchhHHHHHHHhh------hCC--CCCCCCceEEEEe-CCCCCCcHHHHhhceEeccCC-ccchHHHHHHHh
Q psy12682 441 LAKSWMPVLEKMCES------LSP--ETTHPDFRLWLTS-YPSNLFPVSVLQNGVKITNEP-PKGLRANINRSY 504 (755)
Q Consensus 441 L~~swl~~Le~ile~------l~~--~~~h~~FRLwLts-~p~~~fP~~lLq~s~Kv~~Ep-p~glk~nl~~~~ 504 (755)
+.|...|-|.+-+.. +.. -..||+|||||++ .+.+.+|..+..+...|-|-. +.|+-.-++...
T Consensus 90 ~dp~l~plL~k~~~~~g~~i~igd~~v~~~~~FrL~L~T~~~~p~~~pe~~s~vtviNFtvt~~gLe~qll~~v 163 (228)
T PF12781_consen 90 LDPILDPLLRKNIIKSGKFIKIGDKEVDYNPNFRLYLTTKLPNPHYPPEVSSKVTVINFTVTQEGLEDQLLSIV 163 (228)
T ss_dssp HHCTCHHHHTTT-EE-SSEEESSSSEEE--SS-EEEEEESSTTSHHHHHHHHCSEEEE----CHHHHHHHHHHH
T ss_pred cChhhhhhhcchhccCCceEEecCeEEEeeccceEEEeecCCCCCCChhhhceeeEEEEEecHHHHHHHHHHHH
Confidence 555544444432211 110 1358999999998 567778888877666665554 677777776443
No 7
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.47 E-value=0.024 Score=60.07 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=82.1
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCch--H------------H-------------------HHH
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQG--P------------I-------------------AVK 422 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~--~------------~-------------------A~~ 422 (755)
..|+++.-+||+==|.....+|+..|. ++..+....... . . ...
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCc
Confidence 468999999999989889999987764 555554332211 0 0 012
Q ss_pred HHHHHHhcCCeEEeccccccc-chhHHHHHHHhhh----CC-------CCCCCCceEEEEeCCCC-----CCcHHHHhhc
Q psy12682 423 LINDGLKKGDWVLLQNCHLAK-SWMPVLEKMCESL----SP-------ETTHPDFRLWLTSYPSN-----LFPVSVLQNG 485 (755)
Q Consensus 423 ~I~~a~~~G~WVlLqN~HL~~-swl~~Le~ile~l----~~-------~~~h~~FRLwLts~p~~-----~fP~~lLq~s 485 (755)
.+..|+++|+||+|..++-++ +....|-.++++- .. -..|++||++.|+.|.. .+|..++.++
T Consensus 98 ~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~ 177 (262)
T TIGR02640 98 RLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRL 177 (262)
T ss_pred hHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhc
Confidence 456788999999999999765 4444565555431 10 02789999999998763 5799999999
Q ss_pred eEeccCCcc
Q psy12682 486 VKITNEPPK 494 (755)
Q Consensus 486 ~Kv~~Epp~ 494 (755)
..+..+.|.
T Consensus 178 ~~i~i~~P~ 186 (262)
T TIGR02640 178 ITIFMDYPD 186 (262)
T ss_pred EEEECCCCC
Confidence 999988875
No 8
>PHA02244 ATPase-like protein
Probab=95.12 E-value=0.16 Score=56.03 Aligned_cols=117 Identities=14% Similarity=0.225 Sum_probs=81.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecC----------CCchHHHHHHHHHHHhcCCeEEecccccccc-
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLG----------QGQGPIAVKLINDGLKKGDWVLLQNCHLAKS- 444 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG----------~gq~~~A~~~I~~a~~~G~WVlLqN~HL~~s- 444 (755)
..|+++.-++|+==+..+..+|...+. .+..++-- .+.+.....-+-.|+++|+|++|..++.++.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~---pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDL---DFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC---CEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 468999999999888889999988764 55554411 1122223345667889999999999997753
Q ss_pred hhHHHHHHHhh----hCC--CCCCCCceEEEEeCC-----------CCCCcHHHHhhceEeccCCccc
Q psy12682 445 WMPVLEKMCES----LSP--ETTHPDFRLWLTSYP-----------SNLFPVSVLQNGVKITNEPPKG 495 (755)
Q Consensus 445 wl~~Le~ile~----l~~--~~~h~~FRLwLts~p-----------~~~fP~~lLq~s~Kv~~Epp~g 495 (755)
=+..|...++. +.. -..|++||++.|+.+ ...++.+++++-+.+.++.|..
T Consensus 196 vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 196 ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 22334444432 111 135999999999987 2568999999999998888863
No 9
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=92.55 E-value=0.36 Score=61.01 Aligned_cols=101 Identities=25% Similarity=0.512 Sum_probs=71.8
Q ss_pred ccCCCCccEEEecCCCCChHHHHHHHHHhcCCCCCCceE----------------EecCCCchHHHHHHHHHHHhcCCeE
Q psy12682 371 NDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSA----------------LSLGQGQGPIAVKLINDGLKKGDWV 434 (755)
Q Consensus 371 ~~s~~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~----------------iSLG~gq~~~A~~~I~~a~~~G~WV 434 (755)
+.|...-|+++--+..+--|+.|.=+|++.|. ++.. ++=..|.-..-+-++-+|+++|.||
T Consensus 883 a~s~~~fP~LiQGpTSSGKTSMI~yla~~tgh---kfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWI 959 (4600)
T COG5271 883 AASLSNFPLLIQGPTSSGKTSMILYLARETGH---KFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWI 959 (4600)
T ss_pred HHhhcCCcEEEecCCCCCcchHHHHHHHHhCc---cEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEE
Confidence 35677889988777667778899999999874 3322 3333343344567888999999999
Q ss_pred Eecccccccc-hhHHHHHHHhhhC----C-----CCCCCCceEEEEeCCC
Q psy12682 435 LLQNCHLAKS-WMPVLEKMCESLS----P-----ETTHPDFRLWLTSYPS 474 (755)
Q Consensus 435 lLqN~HL~~s-wl~~Le~ile~l~----~-----~~~h~~FRLwLts~p~ 474 (755)
+|.-..|||+ -+..|.+++..-. + ..+||+||||-|-.|.
T Consensus 960 VLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNpp 1009 (4600)
T COG5271 960 VLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPP 1009 (4600)
T ss_pred EeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCC
Confidence 9999999996 4445666664311 1 1479999999997653
No 10
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=92.46 E-value=0.76 Score=47.72 Aligned_cols=112 Identities=12% Similarity=0.209 Sum_probs=72.2
Q ss_pred EEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchH-HHHHHHHHHHhcCCeEEeccccccc-chhHHHHHHHhhh-
Q psy12682 380 IFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGP-IAVKLINDGLKKGDWVLLQNCHLAK-SWMPVLEKMCESL- 456 (755)
Q Consensus 380 i~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~-~A~~~I~~a~~~G~WVlLqN~HL~~-swl~~Le~ile~l- 456 (755)
.+.-++|+=-+..+..||+..|. .+.++.-..+-+. .-.+.+.-+++.|.|+++.|+|-.. +=|..+.+.+..+
T Consensus 36 ~~~GpagtGKtetik~La~~lG~---~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i~ 112 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGR---FVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVLSVISQQIQSIQ 112 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT-----EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCC---eEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45667788899999999999984 6777777776554 5578888888999999999999443 5555544433332
Q ss_pred ---CC-----------CCCCCCceEEEEeCCC----CCCcHHHHhhceEeccCCcc
Q psy12682 457 ---SP-----------ETTHPDFRLWLTSYPS----NLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 457 ---~~-----------~~~h~~FRLwLts~p~----~~fP~~lLq~s~Kv~~Epp~ 494 (755)
.. -.+++++++|+|..|. ..+|.+|...-..++.-.|.
T Consensus 113 ~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD 168 (231)
T PF12774_consen 113 DALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPD 168 (231)
T ss_dssp HHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--
T ss_pred HhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCC
Confidence 11 1358899999999754 46999998888888887765
No 11
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.43 E-value=0.1 Score=49.24 Aligned_cols=104 Identities=17% Similarity=0.283 Sum_probs=66.6
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchH---------------HHHHHHHHHHhcCCeEEecccccc
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGP---------------IAVKLINDGLKKGDWVLLQNCHLA 442 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~---------------~A~~~I~~a~~~G~WVlLqN~HL~ 442 (755)
|++++-+||+==+..+..+|+..+. ++..+++.++-.. .....+-+|+++|.|++|.+++.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~---~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR---PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC---EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc---ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC
Confidence 6888888998888889999988864 7777777775221 112233457779999999999998
Q ss_pred cchh-HHHHHHHhhh----CCC----C------CCCCceEEEEeCCCC----CCcHHHHhh
Q psy12682 443 KSWM-PVLEKMCESL----SPE----T------THPDFRLWLTSYPSN----LFPVSVLQN 484 (755)
Q Consensus 443 ~swl-~~Le~ile~l----~~~----~------~h~~FRLwLts~p~~----~fP~~lLq~ 484 (755)
+..+ ..|-.+++.- ... . .|++||++.|+.|.. .++..++.+
T Consensus 78 ~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~R 138 (139)
T PF07728_consen 78 PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDR 138 (139)
T ss_dssp -HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT
T ss_pred CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhh
Confidence 8533 3355555431 000 1 233699999998877 677777654
No 12
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=86.33 E-value=3.2 Score=45.19 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=78.8
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEec----------CC-------Cc--hHHHHHHHHHHHhcCCeEEe
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSL----------GQ-------GQ--GPIAVKLINDGLKKGDWVLL 436 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSL----------G~-------gq--~~~A~~~I~~a~~~G~WVlL 436 (755)
..|+++.-+||.==|..+..+|+..|. .+..|.+ |. |. ...-+..+-.|+++|.|+++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~---~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illl 140 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNW---PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCF 140 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCC---CeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEe
Confidence 358999999999999999999999875 3443332 22 11 11123457789999999999
Q ss_pred cccccccc-hhHHHHHHHhh-----hCC----CCCCCCceEEEEeCCCC------------CCcHHHHhhce-EeccC
Q psy12682 437 QNCHLAKS-WMPVLEKMCES-----LSP----ETTHPDFRLWLTSYPSN------------LFPVSVLQNGV-KITNE 491 (755)
Q Consensus 437 qN~HL~~s-wl~~Le~ile~-----l~~----~~~h~~FRLwLts~p~~------------~fP~~lLq~s~-Kv~~E 491 (755)
.-+..++. =+..|..++|. +.. -..||+||++.|+.|.. .+|.+.+.+=. ++..+
T Consensus 141 DEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 141 DEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred chhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 98888764 44456667763 111 14799999999998843 37999999884 44444
No 13
>KOG1808|consensus
Probab=79.71 E-value=3.7 Score=53.74 Aligned_cols=100 Identities=22% Similarity=0.440 Sum_probs=70.4
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCC----------------CchHHHHHHHHHHHhcCCeEE
Q psy12682 372 DSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQ----------------GQGPIAVKLINDGLKKGDWVL 435 (755)
Q Consensus 372 ~s~~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~----------------gq~~~A~~~I~~a~~~G~WVl 435 (755)
-+...-|+++....++==++.+..+|++.|. ++..|..-+ |.-..=+..+-.|+.+|.|++
T Consensus 436 ~~~~~~pillqG~tssGKtsii~~la~~~g~---~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~v 512 (1856)
T KOG1808|consen 436 ISSGKFPILLQGPTSSGKTSIIKELARATGK---NIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIV 512 (1856)
T ss_pred HhcCCCCeEEecCcCcCchhHHHHHHHHhcc---CceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEE
Confidence 4556679999999988889999999999874 443333222 211222455668999999999
Q ss_pred ecccccccc-hhHHHHHHHhh---h-CC-----CCCCCCceEEEEeCCC
Q psy12682 436 LQNCHLAKS-WMPVLEKMCES---L-SP-----ETTHPDFRLWLTSYPS 474 (755)
Q Consensus 436 LqN~HL~~s-wl~~Le~ile~---l-~~-----~~~h~~FRLwLts~p~ 474 (755)
|--+||+++ =+..|.+++.. + .+ -..|++|+||.|-.|.
T Consensus 513 lD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~ 561 (1856)
T KOG1808|consen 513 LDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP 561 (1856)
T ss_pred eccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence 999999996 34445555543 1 11 1469999999998764
No 14
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=77.59 E-value=35 Score=41.48 Aligned_cols=123 Identities=15% Similarity=0.238 Sum_probs=81.1
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCC-------------------CCCceEEecCCC--ch-HHHHHHHHHHHh-----c
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFG-------------------GSKFSALSLGQG--QG-PIAVKLINDGLK-----K 430 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~-------------------~~~l~~iSLG~g--q~-~~A~~~I~~a~~-----~ 430 (755)
.+||.-++|+==|.....||+..+.. +.....+-+... .+ ...+.+|+.+.. +
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr 119 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDAR 119 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCC
Confidence 46777788888888888888876421 011234444332 12 234566666542 2
Q ss_pred CCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCc--cchHHHHHHHhc
Q psy12682 431 GDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPP--KGLRANINRSYL 505 (755)
Q Consensus 431 G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp--~glk~nl~~~~~ 505 (755)
...++|..+|.... =.+.|-+++| +.+++.+++|+|....++|..|+.+|.++.+.+. .-+...|.+...
T Consensus 120 ~KVIIIDEah~LT~~A~NALLKtLE-----EPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~ 192 (830)
T PRK07003 120 FKVYMIDEVHMLTNHAFNAMLKTLE-----EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILG 192 (830)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHHH-----hcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHH
Confidence 35688999997764 2244556665 3567899999998888999999999999999874 345555555543
No 15
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=72.88 E-value=37 Score=36.58 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=72.8
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHH------hcCCeEEecccccc-c-chhHHH
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGL------KKGDWVLLQNCHLA-K-SWMPVL 449 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~------~~G~WVlLqN~HL~-~-swl~~L 449 (755)
++++.-+||+==+..+..+|++.+. .+..+..+.+.-......+.... ..+.=|++.++|.. . ..-..|
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~---~~~~i~~~~~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L 121 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGA---EVLFVNGSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHL 121 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCc---cceEeccCcccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHH
Confidence 4555678898888888889988753 55566655533122223333222 24567899999965 2 333445
Q ss_pred HHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 450 EKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 450 e~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
..+++. ..++.++.+||...+.++..|..+|..+.+.+|.
T Consensus 122 ~~~le~-----~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~ 161 (316)
T PHA02544 122 RSFMEA-----YSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPT 161 (316)
T ss_pred HHHHHh-----cCCCceEEEEcCChhhchHHHHhhceEEEeCCCC
Confidence 555553 3467899999988788999999999998886665
No 16
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=70.64 E-value=45 Score=32.38 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=70.6
Q ss_pred EEEecCCCCChHHHHHHHHHhcCC--------------------CCCCceEEecCCC--c--hHHHHHHHHHHHhcC---
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGF--------------------GGSKFSALSLGQG--Q--GPIAVKLINDGLKKG--- 431 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~--------------------~~~~l~~iSLG~g--q--~~~A~~~I~~a~~~G--- 431 (755)
+||.-++|..-......||+..-- ....+..+.-... + -+.++.+++.+....
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~ 101 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEG 101 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHHhcC
Confidence 577777788878888888876311 1234555544433 1 245566666554332
Q ss_pred --CeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCc
Q psy12682 432 --DWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPP 493 (755)
Q Consensus 432 --~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp 493 (755)
.=+++.|+|.+.. --..|-+.+| +..++-+++|+|.....++..|..+|..+.+.|.
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LE-----epp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLE-----EPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHH-----STTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhc-----CCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 3467799996553 3345777777 4668999999999999999999999999998764
No 17
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=67.47 E-value=1e+02 Score=37.63 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=48.8
Q ss_pred eeCCCceEEEEeCCCCCCCChhhhhceEEEEeEeChhhHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Q psy12682 21 EYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGA 87 (755)
Q Consensus 21 d~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~~r~~L~~~~~ 87 (755)
+..++.+++|+|..+ ..+++-|.+||..++|.--...--.+.|..++..|.-+++++--+++...+
T Consensus 145 EPP~~v~FILaTtd~-~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 145 EPPPHVKFILATTDP-QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210 (830)
T ss_pred hcCCCeEEEEEECCh-hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 345688999999765 456788999999999987655555666677788888777776666665543
No 18
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.34 E-value=77 Score=38.05 Aligned_cols=122 Identities=14% Similarity=0.266 Sum_probs=77.1
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC------------------------CCceEEecCC--Cch-HHHHHHHHHHH--
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG------------------------SKFSALSLGQ--GQG-PIAVKLINDGL-- 428 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~------------------------~~l~~iSLG~--gq~-~~A~~~I~~a~-- 428 (755)
-+||.-++|.-=+.....||+..+..+ .....+-+.. ..+ ...+++++...
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~ 119 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYA 119 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhc
Confidence 367777888888888888888764310 0112222222 122 33455665543
Q ss_pred -hcCCe--EEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHH
Q psy12682 429 -KKGDW--VLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINR 502 (755)
Q Consensus 429 -~~G~W--VlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~ 502 (755)
..|+| +++..+|.... =.+.|-|.+| +..++.+++|+|....++|..|+.+|..+.+.+++ -+...+.+
T Consensus 120 P~~gr~KViIIDEah~Ls~~AaNALLKTLE-----EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 120 PTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-----EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred hhcCCceEEEEEChHhcCHHHHHHHHHhhc-----cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHH
Confidence 35554 67799997753 3344545554 45677888999988889999999999999998864 34455544
Q ss_pred Hh
Q psy12682 503 SY 504 (755)
Q Consensus 503 ~~ 504 (755)
..
T Consensus 195 Il 196 (700)
T PRK12323 195 IL 196 (700)
T ss_pred HH
Confidence 44
No 19
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=63.78 E-value=31 Score=32.35 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=52.7
Q ss_pred CCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHHhcCCeEEecccccccchh-HHHHHHH
Q psy12682 375 CTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWM-PVLEKMC 453 (755)
Q Consensus 375 ~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~~~G~WVlLqN~HL~~swl-~~Le~il 453 (755)
...|+++.-.+|+--......+....+.....+..+..+.-. .+.++.+ .|++++|+|++..+.-. ..|...+
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----~~~l~~a--~~gtL~l~~i~~L~~~~Q~~L~~~l 93 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----AELLEQA--KGGTLYLKNIDRLSPEAQRRLLDLL 93 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----HHHHHHC--TTSEEEEECGCCS-HHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----HHHHHHc--CCCEEEECChHHCCHHHHHHHHHHH
Confidence 457999999999876554333333332212234443333322 3355554 89999999999666533 4466665
Q ss_pred hhhCCCCCCCCceEEEEeCCC
Q psy12682 454 ESLSPETTHPDFRLWLTSYPS 474 (755)
Q Consensus 454 e~l~~~~~h~~FRLwLts~p~ 474 (755)
... + ..++|+..||...
T Consensus 94 ~~~---~-~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 94 KRQ---E-RSNVRLIASSSQD 110 (138)
T ss_dssp HHC---T-TTTSEEEEEECC-
T ss_pred Hhc---C-CCCeEEEEEeCCC
Confidence 542 2 5788999998653
No 20
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.26 E-value=88 Score=36.52 Aligned_cols=134 Identities=14% Similarity=0.154 Sum_probs=81.4
Q ss_pred hhhhccCCCCccEEEecCCCCChHHHHHHHHHhcCCCC-------------------C--CceEEecCCCch-HHHHHHH
Q psy12682 367 VSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGG-------------------S--KFSALSLGQGQG-PIAVKLI 424 (755)
Q Consensus 367 ~~~~~~s~~~tPii~ils~g~DP~~~i~~lA~~~~~~~-------------------~--~l~~iSLG~gq~-~~A~~~I 424 (755)
..++....-...+||.-++|+-=+....-+|+..+... . .+..+--++..+ +..+.++
T Consensus 29 ~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~ 108 (509)
T PRK14958 29 SNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELL 108 (509)
T ss_pred HHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHH
Confidence 33443333333578888899988888888888764210 0 122222222222 2345555
Q ss_pred HHHHh---cC--CeEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--ch
Q psy12682 425 NDGLK---KG--DWVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GL 496 (755)
Q Consensus 425 ~~a~~---~G--~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--gl 496 (755)
+.+.. .| ..+++..+|... +=...|-+.+|+ ..+..++.|++....++|..|+.+|..+.+.+++ -+
T Consensus 109 ~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-----pp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i 183 (509)
T PRK14958 109 DNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-----PPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQI 183 (509)
T ss_pred HHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----cCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHH
Confidence 54432 23 588999999765 344556666663 4456777777765567888999999999998754 34
Q ss_pred HHHHHHHhc
Q psy12682 497 RANINRSYL 505 (755)
Q Consensus 497 k~nl~~~~~ 505 (755)
...+.+...
T Consensus 184 ~~~l~~il~ 192 (509)
T PRK14958 184 AAHCQHLLK 192 (509)
T ss_pred HHHHHHHHH
Confidence 455554543
No 21
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.79 E-value=1.5e+02 Score=35.66 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=80.4
Q ss_pred hhhhccCCCCccEEEecCCCCChHHHHHHHHHhcCCC-------------------CCCceEEecCC--Cch-HHHHHHH
Q psy12682 367 VSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFG-------------------GSKFSALSLGQ--GQG-PIAVKLI 424 (755)
Q Consensus 367 ~~~~~~s~~~tPii~ils~g~DP~~~i~~lA~~~~~~-------------------~~~l~~iSLG~--gq~-~~A~~~I 424 (755)
..++........+||.-++|+-=+.....+|+..+.. +.....+-+-. ..+ ...+.++
T Consensus 28 ~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli 107 (702)
T PRK14960 28 SSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELL 107 (702)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 3444433334467888889998888888888886431 00111221111 112 2344555
Q ss_pred HHHH---hcC--CeEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--ch
Q psy12682 425 NDGL---KKG--DWVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GL 496 (755)
Q Consensus 425 ~~a~---~~G--~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--gl 496 (755)
+.+. ..| .=+++.++|... .-...|-+.+|+ ..+.-+++|++....++|..++.+|..+.+.+++ -+
T Consensus 108 ~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----PP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI 182 (702)
T PRK14960 108 DNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEI 182 (702)
T ss_pred HHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----CCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHH
Confidence 5442 223 457779999765 444556666653 3456688888876778999999999999998864 34
Q ss_pred HHHHHHHh
Q psy12682 497 RANINRSY 504 (755)
Q Consensus 497 k~nl~~~~ 504 (755)
...+.+..
T Consensus 183 ~k~L~~Il 190 (702)
T PRK14960 183 TKHLGAIL 190 (702)
T ss_pred HHHHHHHH
Confidence 44444443
No 22
>KOG1899|consensus
Probab=54.26 E-value=31 Score=40.10 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=38.3
Q ss_pred EEeEeChhhHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12682 50 LNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKI 100 (755)
Q Consensus 50 INFtvT~~gLe~qlL~~vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~L 100 (755)
.+.+.|.+-|++++++. -+||.|+-+|+.++.+.|.++..+|..=
T Consensus 153 ~kLnatEEmLQqellsr------tsLETqKlDLmaevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 153 NKLNATEEMLQQELLSR------TSLETQKLDLMAEVSELKLKLTALEKEQ 197 (861)
T ss_pred hhhchHHHHHHHHHHhh------hhHHHHHhHHHHHHHHhHHHHHHHHHHh
Confidence 46677888888888877 6899999999999999999999998543
No 23
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=54.20 E-value=1.6e+02 Score=26.31 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=65.1
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHH-HHH----------HHHHHhcCCeEEecccccccc
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIA-VKL----------INDGLKKGDWVLLQNCHLAKS 444 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A-~~~----------I~~a~~~G~WVlLqN~HL~~s 444 (755)
..++++.-+||+=-|..+..+++.......++..+...+...... ... .......+..+++.++|....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 446777878899888888888877521123555665554432211 111 112234678899999997643
Q ss_pred hh-HHHHHHHhhhCCC-CCCCCceEEEEeCCCC--CCcHHHHhhc
Q psy12682 445 WM-PVLEKMCESLSPE-TTHPDFRLWLTSYPSN--LFPVSVLQNG 485 (755)
Q Consensus 445 wl-~~Le~ile~l~~~-~~h~~FRLwLts~p~~--~fP~~lLq~s 485 (755)
+. ..+...++..... ..+.++++++++.+.. .++..+..++
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~ 143 (151)
T cd00009 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRL 143 (151)
T ss_pred HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhh
Confidence 32 3455555543210 1257899999987766 5666666555
No 24
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=53.02 E-value=91 Score=34.15 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHh---cCCe--EEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccC
Q psy12682 418 PIAVKLINDGLK---KGDW--VLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNE 491 (755)
Q Consensus 418 ~~A~~~I~~a~~---~G~W--VlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~E 491 (755)
+.++.+++.+.. .|+| +++.++|-+. .-.+.|=|.+| ++.++..++|+|.....+|..|..+|.++.+-
T Consensus 89 d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LE-----EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 89 DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLE-----EPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred HHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHh-----CCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 455666666553 3444 7789999544 45556667776 34577888899988888999999999999998
Q ss_pred Ccc
Q psy12682 492 PPK 494 (755)
Q Consensus 492 pp~ 494 (755)
||+
T Consensus 164 ~~~ 166 (328)
T PRK05707 164 LPS 166 (328)
T ss_pred CcC
Confidence 875
No 25
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=52.13 E-value=1.8e+02 Score=34.26 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=72.3
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCC-------------------CCCceEEecCCCc--h-HHHHHHHHHHHh---cCCe
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFG-------------------GSKFSALSLGQGQ--G-PIAVKLINDGLK---KGDW 433 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~-------------------~~~l~~iSLG~gq--~-~~A~~~I~~a~~---~G~W 433 (755)
.||.-++|+-=+.....||+...-. +.+...+-++... + ...+..++.+.. .|.|
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~ 118 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARF 118 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCe
Confidence 4777788888888888888775210 0234455554332 1 345555554321 2444
Q ss_pred --EEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 434 --VLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 434 --VlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
|++.++|.... =...|-+.+| +.++..+++|++....++|..|.++|..+.+.|++
T Consensus 119 KVvIIDEad~Lt~~A~NALLK~LE-----Epp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls 177 (535)
T PRK08451 119 KIFIIDEVHMLTKEAFNALLKTLE-----EPPSYVKFILATTDPLKLPATILSRTQHFRFKQIP 177 (535)
T ss_pred EEEEEECcccCCHHHHHHHHHHHh-----hcCCceEEEEEECChhhCchHHHhhceeEEcCCCC
Confidence 77899997764 3334555555 34567788888855588999999999999999865
No 26
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=52.02 E-value=2e+02 Score=34.07 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=70.0
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCC---------------------CCCceEEecCCCch-HHHHHHHHHHH-----hc
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFG---------------------GSKFSALSLGQGQG-PIAVKLINDGL-----KK 430 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~---------------------~~~l~~iSLG~gq~-~~A~~~I~~a~-----~~ 430 (755)
-+||.-++|.==+.....||+..+-. ..++..+.-.++.+ ...+.+++.+. ..
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~ 119 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAK 119 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCC
Confidence 46777778877777777777765320 01222232222223 23445555543 23
Q ss_pred CCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 431 GDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 431 G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
...+++.++|.... =...|-+.+| ++.++..+.+++....++|..|+.+|..+.+.+|+
T Consensus 120 ~kViIIDE~~~Lt~~a~naLLKtLE-----epp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~ 179 (559)
T PRK05563 120 YKVYIIDEVHMLSTGAFNALLKTLE-----EPPAHVIFILATTEPHKIPATILSRCQRFDFKRIS 179 (559)
T ss_pred eEEEEEECcccCCHHHHHHHHHHhc-----CCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCC
Confidence 46889999997753 2334545444 44567777877765678999999999999998865
No 27
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=51.53 E-value=1.5e+02 Score=26.64 Aligned_cols=106 Identities=11% Similarity=0.124 Sum_probs=70.6
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCc------h-HHHHHHHHHHHhcC--CeEEecccccccchh---
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQ------G-PIAVKLINDGLKKG--DWVLLQNCHLAKSWM--- 446 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq------~-~~A~~~I~~a~~~G--~WVlLqN~HL~~swl--- 446 (755)
+++.-+||.-=|..+..+|+..+. ++..++.+.-. . ....+.+++|.+.+ .=+++.|+|....--
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~---~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF---PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS---EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc---ccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc
Confidence 466777899999999999999875 56556554432 2 35678888887776 677889999665543
Q ss_pred -----HH-HHHHHhhhCC-CCCCCCceEEEEeCCCCCCcHHHH-hhceE
Q psy12682 447 -----PV-LEKMCESLSP-ETTHPDFRLWLTSYPSNLFPVSVL-QNGVK 487 (755)
Q Consensus 447 -----~~-Le~ile~l~~-~~~h~~FRLwLts~p~~~fP~~lL-q~s~K 487 (755)
.. +..++..+.. ...+.+..+..||.....++..++ .+.-+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~ 126 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDR 126 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEE
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcE
Confidence 11 2333333321 122456888899988888888888 54433
No 28
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=51.49 E-value=1.6e+02 Score=32.13 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=71.2
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCC---------------------CCCceEEecCCCch---HHHHHHHHHHH---hcC
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFG---------------------GSKFSALSLGQGQG---PIAVKLINDGL---KKG 431 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~---------------------~~~l~~iSLG~gq~---~~A~~~I~~a~---~~G 431 (755)
.+|.-++|.--+.....+|+..--. ...+..+... |.. +.++..++... ..|
T Consensus 31 ~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~-~~~i~id~ir~l~~~~~~~~~~~ 109 (329)
T PRK08058 31 YLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD-GQSIKKDQIRYLKEEFSKSGVES 109 (329)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc-cccCCHHHHHHHHHHHhhCCccc
Confidence 4566666666566666666653110 1134444332 321 34555665544 233
Q ss_pred --CeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCccc
Q psy12682 432 --DWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKG 495 (755)
Q Consensus 432 --~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~g 495 (755)
..|++.++|-... =...|-+.+| +++++-.++|++.....++..|..+|..+.+.||+.
T Consensus 110 ~~kvviI~~a~~~~~~a~NaLLK~LE-----EPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~ 171 (329)
T PRK08058 110 NKKVYIIEHADKMTASAANSLLKFLE-----EPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPP 171 (329)
T ss_pred CceEEEeehHhhhCHHHHHHHHHHhc-----CCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCH
Confidence 4788899986654 3344656665 567888899998777789999999999999999875
No 29
>PF13173 AAA_14: AAA domain
Probab=50.69 E-value=1e+02 Score=28.31 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=59.9
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchH-HH-----HHHHHHHHhcCCeEEecccccccchhHHHHHH
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGP-IA-----VKLINDGLKKGDWVLLQNCHLAKSWMPVLEKM 452 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~-~A-----~~~I~~a~~~G~WVlLqN~HL~~swl~~Le~i 452 (755)
+++.-..|+==|..+.++|++.. ..+++..+++-..... .+ +...+.....+..|+|.++|.++.|...+..+
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l 83 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFL 83 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHHHHH
Confidence 34444457777888889998764 1346777887765432 11 12222212357899999999999999998887
Q ss_pred HhhhCCCCCCCCceEEEEeCCC
Q psy12682 453 CESLSPETTHPDFRLWLTSYPS 474 (755)
Q Consensus 453 le~l~~~~~h~~FRLwLts~p~ 474 (755)
++. .++.++++|+...
T Consensus 84 ~d~------~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 84 VDN------GPNIKIILTGSSS 99 (128)
T ss_pred HHh------ccCceEEEEccch
Confidence 752 2788999997653
No 30
>PLN03025 replication factor C subunit; Provisional
Probab=48.92 E-value=1.7e+02 Score=31.78 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=75.8
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCc--h-HHHHHHHHHHHhc------C--CeEEecccccccchh-
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQ--G-PIAVKLINDGLKK------G--DWVLLQNCHLAKSWM- 446 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq--~-~~A~~~I~~a~~~------G--~WVlLqN~HL~~swl- 446 (755)
++|.-+||.==+..+..+|++..-....-..+.+..+. + ...+..|+...+. | .-|+|.++|....-.
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq 116 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ 116 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH
Confidence 77888889888888898998752101112234444332 2 2344455443221 3 467889999776533
Q ss_pred HHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHH
Q psy12682 447 PVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRS 503 (755)
Q Consensus 447 ~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~ 503 (755)
..|.+.+|. ..+.-|++++|...+.+...|..+|..+.+.+|+ .++.-+.+.
T Consensus 117 ~aL~~~lE~-----~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i 170 (319)
T PLN03025 117 QALRRTMEI-----YSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKV 170 (319)
T ss_pred HHHHHHHhc-----ccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHH
Confidence 235555553 3455688999988888888999999999998874 334444433
No 31
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=46.65 E-value=28 Score=42.38 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=37.5
Q ss_pred eeCCCceEEEEeCCCCCCCChhhhhceEEEEeEeChhhHHHHHHHHHHhhhcccHHH
Q psy12682 21 EYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEA 77 (755)
Q Consensus 21 d~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~ 77 (755)
+.|++||||||| .++|.||+.+..+...|-|. .+.|+..-|+...-....+.++.
T Consensus 199 ~~h~~FRL~lt~-~~~~~~P~~lL~~s~kv~~E-~p~gik~~l~~~~~~~~~~~~~~ 253 (707)
T PF03028_consen 199 EIHPNFRLFLTS-EPSPSFPISLLQSSIKVTYE-PPPGIKANLLRTYNSISQDFFEM 253 (707)
T ss_dssp TTSTT-EEEEEE-ESSTTS-HHHHHCSEEEEE----SSHHHHHHHHHCC--SCCHHH
T ss_pred ccccceEEEEEe-cCcccCCHHHHHcccceeeC-ChhHHHHHHHHHHHhhhhhhhhc
Confidence 569999999988 77899999998887777776 56788777777666655555544
No 32
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.63 E-value=2.6e+02 Score=31.52 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=68.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHH---h--cCCeEEecccccccc-hhHHHH
Q psy12682 377 VPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGL---K--KGDWVLLQNCHLAKS-WMPVLE 450 (755)
Q Consensus 377 tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~---~--~G~WVlLqN~HL~~s-wl~~Le 450 (755)
.+++|.-+||+==|.....+|+..+. .+..++-...........++.+. . ++.-|+|.++|-... ....|-
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~---~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL 113 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDA---PFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALL 113 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHH
Confidence 36888888999889889999988763 55555544332233455565553 2 556788999996543 222333
Q ss_pred HHHhhhCCCCCCCCceEEEEe--CCCCCCcHHHHhhceEeccCCcc
Q psy12682 451 KMCESLSPETTHPDFRLWLTS--YPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 451 ~ile~l~~~~~h~~FRLwLts--~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
..++. ..+.++.++ .|...++..|+.+|..+.+.|++
T Consensus 114 ~~le~-------~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls 152 (413)
T PRK13342 114 PHVED-------GTITLIGATTENPSFEVNPALLSRAQVFELKPLS 152 (413)
T ss_pred HHhhc-------CcEEEEEeCCCChhhhccHHHhccceeeEeCCCC
Confidence 33331 235555444 33346888999999999998865
No 33
>KOG2264|consensus
Probab=45.46 E-value=76 Score=36.62 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=37.1
Q ss_pred HHHHH-HHHHHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy12682 59 LADQL-LGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQI 103 (755)
Q Consensus 59 Le~ql-L~~vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~ 103 (755)
+++|. +...|+.|--|+|.+|++|..+++++..++.++...|++.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~ 126 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK 126 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 44443 4677888999999999999999999999998888877653
No 34
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.43 E-value=1.7e+02 Score=33.90 Aligned_cols=123 Identities=10% Similarity=0.120 Sum_probs=78.4
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCC----C-----------------CCCceEEecCCCch-HHHHHHHHHHH-----hc
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGF----G-----------------GSKFSALSLGQGQG-PIAVKLINDGL-----KK 430 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~----~-----------------~~~l~~iSLG~gq~-~~A~~~I~~a~-----~~ 430 (755)
.+||.-++|.-=+....-+|+..+. + ...+..+.-.+..+ ...+.+++.+. .+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~ 116 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSK 116 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCC
Confidence 4888888888777777777775321 0 11222222222223 34566666653 23
Q ss_pred CCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHhc
Q psy12682 431 GDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSYL 505 (755)
Q Consensus 431 G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~~ 505 (755)
..-+++.++|.... =...|-+.+| +..+.-++++++....++|..|+.+|..+-+.+++ .+...+.+...
T Consensus 117 ~KVvIIDEah~Ls~~A~NaLLK~LE-----ePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~ 189 (491)
T PRK14964 117 FKVYIIDEVHMLSNSAFNALLKTLE-----EPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAK 189 (491)
T ss_pred ceEEEEeChHhCCHHHHHHHHHHHh-----CCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHH
Confidence 46889999997654 2344555555 34566788888877778999999999999998754 45556655543
No 35
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.06 E-value=2.7e+02 Score=34.87 Aligned_cols=121 Identities=16% Similarity=0.235 Sum_probs=76.9
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCCC-------------------CceEEecCCC--ch-HHHHHHHHHHH---hcCC-
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGGS-------------------KFSALSLGQG--QG-PIAVKLINDGL---KKGD- 432 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~~-------------------~l~~iSLG~g--q~-~~A~~~I~~a~---~~G~- 432 (755)
+||.-++|+==+.....||+..+.... ....+-+-.. .+ ...+.+++... ..|.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~ 120 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRF 120 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCc
Confidence 578888898888888889988653100 1111222111 11 23445554433 2354
Q ss_pred -eEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCc--cchHHHHHHHh
Q psy12682 433 -WVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPP--KGLRANINRSY 504 (755)
Q Consensus 433 -WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp--~glk~nl~~~~ 504 (755)
=++|.++|.... =+..|-+++| +..++.|++++|....++|..|+.+|..+.+.|. .-++.-+.+..
T Consensus 121 KViIIDEAh~LT~eAqNALLKtLE-----EPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 121 KVYLIDEVHMLSRSSFNALLKTLE-----EPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred EEEEEechHhcCHHHHHHHHHHHh-----ccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 456799997753 4455656665 4567889998887777899999999999999886 34555555544
No 36
>KOG0978|consensus
Probab=45.03 E-value=1.3e+02 Score=36.15 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=58.2
Q ss_pred HHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHH----HHHHH
Q psy12682 67 VVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAV----AEVTE 142 (755)
Q Consensus 67 vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e----~~~~~ 142 (755)
.+..++-.|+++-..+-.........+..+|+++=..=++..|.+.+...+-..++..|.++.++.+.++. .+..+
T Consensus 500 ~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~ 579 (698)
T KOG0978|consen 500 LLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSE 579 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555556666666554444445577888899999999999999999886654 34444
Q ss_pred HHHHHHHhhchHHHHH
Q psy12682 143 KSIDAARLEYTPIAAH 158 (755)
Q Consensus 143 ~~i~~~r~~Y~pvA~~ 158 (755)
+++......|...+..
T Consensus 580 ~~le~i~~~~~e~~~e 595 (698)
T KOG0978|consen 580 AKLEQIQEQYAELELE 595 (698)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555556555543
No 37
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.90 E-value=1.3e+02 Score=34.56 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=49.1
Q ss_pred hcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy12682 71 DRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAAR 149 (755)
Q Consensus 71 E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r 149 (755)
..|++.++.++|..+..+.+.++.+++..| ..|......--.+.+....++..+....+..+++++.++...++.+..
T Consensus 328 ~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l-~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 328 DRPELKEKLEELEEELEELKEELEKLKKNL-KKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888888888888888999999998884 444432212223445556666666666666666655555554444433
No 38
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=44.09 E-value=3.2e+02 Score=26.76 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=67.8
Q ss_pred EEEecCCCCChHHHHHHHHHhcCC---------------------CCCCceEEecCCCc-h-HHHHHHHHHHHh---cC-
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGF---------------------GGSKFSALSLGQGQ-G-PIAVKLINDGLK---KG- 431 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~---------------------~~~~l~~iSLG~gq-~-~~A~~~I~~a~~---~G- 431 (755)
++|.-++|.-=+.....+|+...- ....+..+....+. + +.++..++.+.. .|
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 96 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESG 96 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcccCC
Confidence 666777888877778888877421 01123444433222 2 355555666544 23
Q ss_pred -CeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 432 -DWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 432 -~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
.=|++.|+|-... -...|-+.++ +..++-.+.+++.....++..+..+|..+.+.||+
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le-----~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLE-----EPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhc-----CCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 3567799986543 2233444443 34456667777755578888999999999998876
No 39
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=43.64 E-value=2.1e+02 Score=34.51 Aligned_cols=121 Identities=14% Similarity=0.240 Sum_probs=76.4
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCC-------------------CCceEEecCCC--ch-HHHHHHHHHHH---hcCCe
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGG-------------------SKFSALSLGQG--QG-PIAVKLINDGL---KKGDW 433 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~-------------------~~l~~iSLG~g--q~-~~A~~~I~~a~---~~G~W 433 (755)
+||.-++|+-=+.....||+..+... .....+-+... .+ ...+.+++.+. ..|.|
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~ 120 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRF 120 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCC
Confidence 57777888887877777887754210 01111222211 12 34555665544 34554
Q ss_pred --EEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHh
Q psy12682 434 --VLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSY 504 (755)
Q Consensus 434 --VlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~ 504 (755)
+++.++|.... =.+.|=+.+| +..++.+++|+|....++|..|+.+|..+.+.+++ -+..-+.+..
T Consensus 121 KV~IIDEah~Ls~~a~NALLKtLE-----EPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 121 KVYLIDEVHMLSRHSFNALLKTLE-----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred EEEEEechHhCCHHHHHHHHHHHH-----cCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 56799997663 4445556665 45677888888877778999999999999999874 3445555444
No 40
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.55 E-value=1.3e+02 Score=29.51 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHH-----HHHHHHH
Q psy12682 73 PDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEV-----TEKSIDA 147 (755)
Q Consensus 73 PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~-----~~~~i~~ 147 (755)
.+++.+..+|..+..+.+...+.++..|=.+.+ -+-+++|...+++.+.+-.++..+++..+. +.++++.
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~-----~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~ 149 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSS-----EPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEK 149 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 456666677777777777777777755444332 246788999999999999899888887665 2345555
Q ss_pred HHhhch
Q psy12682 148 ARLEYT 153 (755)
Q Consensus 148 ~r~~Y~ 153 (755)
+...|.
T Consensus 150 ~~~~~~ 155 (169)
T PF07106_consen 150 LEKEYK 155 (169)
T ss_pred HHHHHH
Confidence 544443
No 41
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=41.05 E-value=2.6e+02 Score=29.77 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=69.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCch-HHHHHHHHHHHhcCCeEEecccccccchhH-HHHHHHh
Q psy12682 377 VPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQG-PIAVKLINDGLKKGDWVLLQNCHLAKSWMP-VLEKMCE 454 (755)
Q Consensus 377 tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~-~~A~~~I~~a~~~G~WVlLqN~HL~~swl~-~Le~ile 454 (755)
.+++|.-+||+==|.....+|.+.+. ++..+....... ..-...+ .+...|..+++..+|..+.-.. .|-..++
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~---~~~~~~~~~~~~~~~l~~~l-~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~ 106 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGV---NLKITSGPALEKPGDLAAIL-TNLEEGDVLFIDEIHRLSPAVEELLYPAME 106 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeccchhcCchhHHHHH-HhcccCCEEEEehHhhhCHHHHHHhhHHHh
Confidence 35888888999989999999998874 454443221111 1112222 3456789999999997665322 2322222
Q ss_pred hhC------CC-------CCCCCceEEEEeCCCCCCcHHHHhhc-eEeccCCcc
Q psy12682 455 SLS------PE-------TTHPDFRLWLTSYPSNLFPVSVLQNG-VKITNEPPK 494 (755)
Q Consensus 455 ~l~------~~-------~~h~~FRLwLts~p~~~fP~~lLq~s-~Kv~~Epp~ 494 (755)
... .. ...+.|.++.++.....++..+..++ ..+.++|+.
T Consensus 107 ~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~ 160 (305)
T TIGR00635 107 DFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYT 160 (305)
T ss_pred hhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCC
Confidence 211 00 12355888887766677888888877 445666653
No 42
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.04 E-value=2.4e+02 Score=32.69 Aligned_cols=122 Identities=14% Similarity=0.155 Sum_probs=74.7
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC---------------------CCceEEecCCCch-HHHHHHHHHHH---hcCC
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG---------------------SKFSALSLGQGQG-PIAVKLINDGL---KKGD 432 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~---------------------~~l~~iSLG~gq~-~~A~~~I~~a~---~~G~ 432 (755)
.+||.-++|+-=|.....+|+..+... ..+..+.=.+..+ ..++.+++.+. ..|.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~ 121 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGK 121 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCC
Confidence 378888899988888888888765310 0111121111122 23334443332 3444
Q ss_pred --eEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHh
Q psy12682 433 --WVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSY 504 (755)
Q Consensus 433 --WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~ 504 (755)
=+++..+|.... -...|=+.+| +...+.++++++.....+|..|+.+|..+.+.+++ .++.-+.+..
T Consensus 122 ~KV~IIDEah~Ls~~A~NALLKtLE-----EPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 122 YKVYIIDEVHMLTDQSFNALLKTLE-----EPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred CEEEEEechhhcCHHHHHHHHHHhh-----cCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 467799997764 2334444443 44567788888877778999999999999888864 3455555443
No 43
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=40.88 E-value=45 Score=36.53 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=43.6
Q ss_pred EEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 434 VLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 434 VlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
+++.++|-+.. =-+.|=|.+| ++.++-.++|+|.....+|..|..+|..+.+.||+
T Consensus 111 ~iI~~a~~m~~~AaNaLLKtLE-----EPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~ 167 (325)
T PRK06871 111 VYIQGAERLTEAAANALLKTLE-----EPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPE 167 (325)
T ss_pred EEEechhhhCHHHHHHHHHHhc-----CCCCCeEEEEEECChHhCchHHHhhceEEeCCCCC
Confidence 66788886653 3345666666 46677788889888888999999999999999975
No 44
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=39.77 E-value=1.9e+02 Score=27.07 Aligned_cols=93 Identities=22% Similarity=0.202 Sum_probs=44.3
Q ss_pred eEEEEeEeCh-hhHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhh
Q psy12682 47 VTLLNFMITP-VGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSK 125 (755)
Q Consensus 47 vtvINFtvT~-~gLe~qlL~~vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K 125 (755)
++.+.|+.|. .+++.+ --.||.+.+.|.....+-..+.+..-+ .+-.+|.+.+
T Consensus 12 lss~sfaA~~~~~v~~~---------l~~LEae~q~L~~kE~~r~~~~k~~ae-----------------~a~~~L~~~~ 65 (126)
T PF09403_consen 12 LSSISFAATATASVESE---------LNQLEAEYQQLEQKEEARYNEEKQEAE-----------------AAEAELAELK 65 (126)
T ss_dssp -----------HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred HHHHHHHcccchHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 4455666555 333333 345666666666555554444444333 2334455555
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhHHHHHH
Q psy12682 126 VLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCI 166 (755)
Q Consensus 126 ~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~s~lyf~l 166 (755)
....+|.++++..+.. .++-=.++.|+.+++....++.-+
T Consensus 66 ~~~~~i~e~~~kl~~~-~~~r~yk~eYk~llk~y~~~~~~L 105 (126)
T PF09403_consen 66 ELYAEIEEKIEKLKQD-SKVRWYKDEYKELLKKYKDLLNKL 105 (126)
T ss_dssp HHHHHHHHHHHHHHHH-GGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 5555666655555443 334445677777777766555443
No 45
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.69 E-value=2.5e+02 Score=33.61 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=73.3
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCC------------------------CCCceEEecCC--Cch-HHHHHHHHHHHh--
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFG------------------------GSKFSALSLGQ--GQG-PIAVKLINDGLK-- 429 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~------------------------~~~l~~iSLG~--gq~-~~A~~~I~~a~~-- 429 (755)
+||.-++|+==+....-||+..+.. +.+...+-+.. ..+ ...+.+++.+..
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p 120 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKP 120 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCc
Confidence 5677777777777777777765420 01122233322 122 245666665442
Q ss_pred ---cCCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHH
Q psy12682 430 ---KGDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRS 503 (755)
Q Consensus 430 ---~G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~ 503 (755)
....++|.++|.... =.+.|-+.+|+ ..+..+++|++.-..++|..++.+|..+.+.+++ .+..-+.+.
T Consensus 121 ~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-----PP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i 195 (618)
T PRK14951 121 VQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-----PPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQV 195 (618)
T ss_pred ccCCceEEEEEChhhCCHHHHHHHHHhccc-----CCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHH
Confidence 235889999997654 33445555543 3455566667655556888899999999998854 455555555
Q ss_pred hc
Q psy12682 504 YL 505 (755)
Q Consensus 504 ~~ 505 (755)
..
T Consensus 196 ~~ 197 (618)
T PRK14951 196 LA 197 (618)
T ss_pred HH
Confidence 43
No 46
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=39.28 E-value=3.5e+02 Score=29.14 Aligned_cols=112 Identities=10% Similarity=-0.023 Sum_probs=68.6
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCC---C--CCCceEEec--CCCch-HHHHHHHHHHHh---cC--CeEEecccccccc
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGF---G--GSKFSALSL--GQGQG-PIAVKLINDGLK---KG--DWVLLQNCHLAKS 444 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~---~--~~~l~~iSL--G~gq~-~~A~~~I~~a~~---~G--~WVlLqN~HL~~s 444 (755)
..+|.-++|.-=+.....+|+...- . ...+..+.- |..-+ +.++.+++.+.. .| .-|++.++|-...
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~ 107 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE 107 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH
Confidence 4567777777777777888875311 0 113333322 22222 345556653332 22 4677899886543
Q ss_pred -hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 445 -WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 445 -wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
=.+.|-+.+| ++.++-.++|+|.....++..|..+|..+.+.+|+
T Consensus 108 ~a~naLLK~LE-----epp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~ 153 (313)
T PRK05564 108 QAQNAFLKTIE-----EPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLS 153 (313)
T ss_pred HHHHHHHHHhc-----CCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcC
Confidence 3344556655 34566778888866678888999999999998864
No 47
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.27 E-value=1.3e+02 Score=29.71 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=39.0
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHH--hcCCeEEec--ccccccchhHHHHH
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGL--KKGDWVLLQ--NCHLAKSWMPVLEK 451 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~--~~G~WVlLq--N~HL~~swl~~Le~ 451 (755)
+|++-....|.+..+.+++.... ..++..+....+...-....+..|+ ..|.||++= ++++.+.|+..+-.
T Consensus 31 iivvdd~s~d~t~~~~~~~~~~~--~~~v~~~~~~~~~~~g~~~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 31 VILVDDHSTDGTVQILEFAAAKP--NFQLKILNNSRVSISGKKNALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred EEEEcCCCCcChHHHHHHHHhCC--CcceEEeeccCcccchhHHHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHH
Confidence 55555555677777766333322 2356666555321111112233332 369999995 57888888876544
No 48
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=38.80 E-value=1.5e+02 Score=31.40 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=43.2
Q ss_pred cEEEecCCCCChHHHHHHH-HHhcCCCCCCceEEecCCCchH-HHH-HHHHHHHhcCCeEEecccc--cccchhHHHHHH
Q psy12682 378 PLIFLLTPGADPTAVLLKF-ADDMGFGGSKFSALSLGQGQGP-IAV-KLINDGLKKGDWVLLQNCH--LAKSWMPVLEKM 452 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~l-A~~~~~~~~~l~~iSLG~gq~~-~A~-~~I~~a~~~G~WVlLqN~H--L~~swl~~Le~i 452 (755)
-+|+|=....|++..+..- ..... ...++.|......|. .|. ..++ ..+|.||++=|.| +.+.|+..|-..
T Consensus 32 EIIvVDd~S~d~t~~~~~~~~~~~~--~~~v~vi~~~~n~G~~~a~N~g~~--~A~gd~i~fLD~D~~~~~~wL~~ll~~ 107 (299)
T cd02510 32 EIILVDDFSDKPELKLLLEEYYKKY--LPKVKVLRLKKREGLIRARIAGAR--AATGDVLVFLDSHCEVNVGWLEPLLAR 107 (299)
T ss_pred EEEEEECCCCchHHHHHHHHHHhhc--CCcEEEEEcCCCCCHHHHHHHHHH--HccCCEEEEEeCCcccCccHHHHHHHH
Confidence 4666666566777665422 11221 136777777666664 332 2233 3479999998877 566788776544
Q ss_pred Hh
Q psy12682 453 CE 454 (755)
Q Consensus 453 le 454 (755)
++
T Consensus 108 l~ 109 (299)
T cd02510 108 IA 109 (299)
T ss_pred HH
Confidence 43
No 49
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=38.71 E-value=4.3e+02 Score=32.91 Aligned_cols=123 Identities=11% Similarity=0.138 Sum_probs=74.4
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC---------------------CCceEEecCCCc--h-HHHHHHHHHHH---hc
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG---------------------SKFSALSLGQGQ--G-PIAVKLINDGL---KK 430 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~---------------------~~l~~iSLG~gq--~-~~A~~~I~~a~---~~ 430 (755)
-+||.-.+|.==+....-||+..+... ..+.++-+..+. + ..++++++.+. ..
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~ 118 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAE 118 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhc
Confidence 467777777766667777777653200 122233232211 2 34455555443 22
Q ss_pred C--CeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCc--cchHHHHHHHhc
Q psy12682 431 G--DWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPP--KGLRANINRSYL 505 (755)
Q Consensus 431 G--~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp--~glk~nl~~~~~ 505 (755)
| .=++|.++|.... =.+.|-+++| +..++..++|++....+++..|..+|..+.+.++ ..|..-|.+.+.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LE-----EpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVE-----EPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHh-----CCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH
Confidence 3 3578899997764 3344666666 3456777777776566788899999999999875 445555555553
No 50
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.06 E-value=2.4e+02 Score=28.22 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHH
Q psy12682 74 DLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVA 138 (755)
Q Consensus 74 eLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~ 138 (755)
.++.+...|..++.+.+.++.+++++|-..-..- ++=-+-..++..|++++.+-.++.+.++..
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-EESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777788888888888877774433 222455567788888777777777766643
No 51
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=37.77 E-value=59 Score=32.64 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=24.1
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCch
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQG 417 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~ 417 (755)
=++|+.|++.|=-..+.+.|++....+-++.+|++|....
T Consensus 110 ivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~ 149 (187)
T cd01452 110 IVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDD 149 (187)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 3888888854433335444443221123899999998854
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=37.36 E-value=2.8e+02 Score=30.10 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=75.4
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHHhcCCeEEecccccccchhHH-HHHHHh
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPV-LEKMCE 454 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~~~G~WVlLqN~HL~~swl~~-Le~ile 454 (755)
..+++|.-+||+==|.....+|++.+. ++..++-..-+.......+-.....|.-+++..+|..+.-..+ |-..++
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~---~~~~~~~~~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e 127 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGV---NIRITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAME 127 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCC---CeEEEecccccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHH
Confidence 346888888999889899999999874 4544443222221111222334567999999999976643222 222233
Q ss_pred hhC------C----CC---CCCCceEEEEeCCCCCCcHHHHhhc-eEeccCCcc--chHHHHHHH
Q psy12682 455 SLS------P----ET---THPDFRLWLTSYPSNLFPVSVLQNG-VKITNEPPK--GLRANINRS 503 (755)
Q Consensus 455 ~l~------~----~~---~h~~FRLwLts~p~~~fP~~lLq~s-~Kv~~Epp~--glk~nl~~~ 503 (755)
... . .. .-+.|.++.++.....++..|..++ ..+.+++|+ .++.-+.+.
T Consensus 128 ~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~ 192 (328)
T PRK00080 128 DFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRS 192 (328)
T ss_pred hcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 210 0 00 1256999999988888998887775 455666543 344444433
No 53
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=36.86 E-value=3.3e+02 Score=28.24 Aligned_cols=105 Identities=23% Similarity=0.245 Sum_probs=62.1
Q ss_pred CCeEEEEeCCeeeeeCCCceEEEEeCC---CCCCCChhhhhceEEEEeEeChhhHHHHHHHHHHhhhcccHHHHHHHHHH
Q psy12682 8 GAGWSIKLGDTVIEYNDNFKFYITTKL---RNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIV 84 (755)
Q Consensus 8 gg~~~I~igd~~id~~p~FrL~L~Tk~---~np~~~pei~~~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~~r~~L~~ 84 (755)
++...+.+.|++|.++|++.+|+|..- .+.++|+.+.+....|.+. .||++
T Consensus 117 ~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~------------------~PD~~-------- 170 (231)
T PF12774_consen 117 AKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMM------------------VPDLS-------- 170 (231)
T ss_dssp CTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--------------------S--HH--------
T ss_pred ccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEe------------------CCCHH--------
Confidence 455678889999999999999998742 1345567788888888875 45543
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhHHHH
Q psy12682 85 QGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFF 164 (755)
Q Consensus 85 ~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~s~lyf 164 (755)
.|.+.+--+.|-. ..+.+|++...+|.
T Consensus 171 --------------~I~ei~L~s~GF~---------------------------------------~a~~La~kl~~l~~ 197 (231)
T PF12774_consen 171 --------------LIAEILLLSQGFK---------------------------------------DAKSLAKKLVSLFQ 197 (231)
T ss_dssp --------------HHHHHHHHCCCTS---------------------------------------SHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHcCch---------------------------------------hHHHHHHHHHHHHH
Confidence 2233333455531 11346777777888
Q ss_pred HHHHhhcCCCcccccHHHHHHHHHHHh
Q psy12682 165 CIANLGNIDPMYQYSLVWFDNLYRMAI 191 (755)
Q Consensus 165 ~l~~L~~i~~mYqfSL~~f~~lf~~~i 191 (755)
.+.++-+-.+-|.|.|.....++..+-
T Consensus 198 l~~~~lS~q~hydfgLRalk~vl~~a~ 224 (231)
T PF12774_consen 198 LCKEQLSKQDHYDFGLRALKSVLRMAG 224 (231)
T ss_dssp HHHHCS-SSTT---SHHHHHHHHHHHH
T ss_pred HHHHhhccCccccccHHHHHHHHHHHH
Confidence 888866667789999999988877653
No 54
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.82 E-value=2.8e+02 Score=32.56 Aligned_cols=123 Identities=13% Similarity=0.188 Sum_probs=77.0
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC-------------------C--CceEEecCCC-chHHHHHHHHHHHh---cCC
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG-------------------S--KFSALSLGQG-QGPIAVKLINDGLK---KGD 432 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~-------------------~--~l~~iSLG~g-q~~~A~~~I~~a~~---~G~ 432 (755)
.+||.-++|+-=+.....||+..+... . .+..+--+.. .-...+++++.+.. .|.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~ 119 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGR 119 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCC
Confidence 467888889888888888888764210 0 1111211111 12345666666643 233
Q ss_pred --eEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHhc
Q psy12682 433 --WVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSYL 505 (755)
Q Consensus 433 --WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~~ 505 (755)
=+++.++|.... =.+.|-+.+| +..++.+++|.+....++|..|+.+|..+.+.+++ .+..-+.+.+.
T Consensus 120 ~kVvIIDEad~ls~~a~naLLK~LE-----epp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 120 FKVYIIDEVHMLSKSAFNAMLKTLE-----EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred ceEEEEcCcccCCHHHHHHHHHHHh-----CCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 467799997654 2334545554 34567788888866677888899999999999874 45555655553
No 55
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.55 E-value=2.6e+02 Score=23.62 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q psy12682 73 PDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSI 145 (755)
Q Consensus 73 PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i 145 (755)
.|.|++-.+|.+.+-..|.++..||+++-+.-.. ..++++..--++|.+-.+....+++.+....+.
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~------~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPE------SIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999999999998832211 344555555556665555555444444444333
No 56
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=36.43 E-value=3.1e+02 Score=27.98 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHH---hcCCeEEeccccccc-chhHHHHHHHhhhCCCCCC
Q psy12682 387 ADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGL---KKGDWVLLQNCHLAK-SWMPVLEKMCESLSPETTH 462 (755)
Q Consensus 387 ~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~---~~G~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h 462 (755)
.|+-....++....+. +++..+.=+.-.-+.++.+++.+. ..|. +++.++|... .-.+.|=+++| ++.
T Consensus 11 ~d~e~~~~~l~~~~~~--~~~~~f~~~~i~Vd~iReii~~~~~~~~~~k-~iI~~a~~l~~~A~NaLLK~LE-----EPp 82 (206)
T PRK08485 11 SDFEESKEELINEFGK--KNLRFFIKEEFKIEDAKEVIAEAYIAESEEK-IIVIAAPSYGIEAQNALLKILE-----EPP 82 (206)
T ss_pred CCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHhhCCCCcE-EEEEchHhhCHHHHHHHHHHhc-----CCC
Confidence 5888888888888774 566666444333356677777654 3444 4566788554 33345666666 344
Q ss_pred CCceEEEEeCCCCCCcHHHHhhceEec
Q psy12682 463 PDFRLWLTSYPSNLFPVSVLQNGVKIT 489 (755)
Q Consensus 463 ~~FRLwLts~p~~~fP~~lLq~s~Kv~ 489 (755)
++--.+|.|.....+|..|..+|..+.
T Consensus 83 ~~~~fiL~t~~~~~llpTI~SRc~~~~ 109 (206)
T PRK08485 83 KNICFIIVAKSKNLLLPTIRSRLIIEK 109 (206)
T ss_pred CCeEEEEEeCChHhCchHHHhhheecc
Confidence 556667777777789999999998754
No 57
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=35.13 E-value=3.7e+02 Score=28.55 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=67.7
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecC--CCch-HHHHHHHHHHHh-------cCCeEEecccccccc-hh
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLG--QGQG-PIAVKLINDGLK-------KGDWVLLQNCHLAKS-WM 446 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG--~gq~-~~A~~~I~~a~~-------~G~WVlLqN~HL~~s-wl 446 (755)
+++|.-+||+==+..+..+|++..-.......+.+. .+.+ ......+..... ....|++.++|.... ..
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~ 119 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQ 119 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHH
Confidence 477777788887888888888753111122334442 2222 223333333322 234899999986543 33
Q ss_pred HHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 447 PVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 447 ~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
..|.++++. ..++-++.+++.....+...+..+|..+.+.|++
T Consensus 120 ~~L~~~le~-----~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~ 162 (319)
T PRK00440 120 QALRRTMEM-----YSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK 162 (319)
T ss_pred HHHHHHHhc-----CCCCCeEEEEeCCccccchhHHHHhheeeeCCCC
Confidence 445555543 3345678888876677777888899888888764
No 58
>PRK04132 replication factor C small subunit; Provisional
Probab=35.03 E-value=2.2e+02 Score=35.42 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhcCCCCCCceEEecCCCc--h-HHHHHHHHHHHhc----C---CeEEecccccccc-hhHHHHHHHhhhC
Q psy12682 389 PTAVLLKFADDMGFGGSKFSALSLGQGQ--G-PIAVKLINDGLKK----G---DWVLLQNCHLAKS-WMPVLEKMCESLS 457 (755)
Q Consensus 389 P~~~i~~lA~~~~~~~~~l~~iSLG~gq--~-~~A~~~I~~a~~~----G---~WVlLqN~HL~~s-wl~~Le~ile~l~ 457 (755)
=|..+..+|++....+-+...+-|.... + ...++.|+.+... | .=|+|.+||-... =-..|-+++|
T Consensus 579 KTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lE--- 655 (846)
T PRK04132 579 NTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME--- 655 (846)
T ss_pred HHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhh---
Confidence 4667788888862100122344444443 3 4566777665432 2 4788999997764 2234556665
Q ss_pred CCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHh
Q psy12682 458 PETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSY 504 (755)
Q Consensus 458 ~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~ 504 (755)
+..++-+++|+|.+...++.+|..+|..+.+.||+ .+...+.+..
T Consensus 656 --ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 656 --MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred --CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999999999999986 4555555443
No 59
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.01 E-value=3.3e+02 Score=24.26 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHH
Q psy12682 73 PDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEK 134 (755)
Q Consensus 73 PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~k 134 (755)
-+++++|.++.....+.+.+...+-..|=+.-.+. -+-++++......|....++..+
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888777777654444333 23445555444444444443333
No 60
>PRK04195 replication factor C large subunit; Provisional
Probab=34.62 E-value=3.9e+02 Score=30.85 Aligned_cols=109 Identities=12% Similarity=0.174 Sum_probs=72.5
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCc-hHHHHHHHHHHHh-------cCCeEEecccccccc---
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQ-GPIAVKLINDGLK-------KGDWVLLQNCHLAKS--- 444 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq-~~~A~~~I~~a~~-------~G~WVlLqN~HL~~s--- 444 (755)
..++++.-+||+==|..+..+|++.+. .+..+.-+... .......+..+.. .+.-|+|.++|....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~---~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d 115 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW---EVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED 115 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC---CEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc
Confidence 457888888999989999999999875 44444433322 2344555555543 356889999886543
Q ss_pred --hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcH-HHHhhceEeccCCcc
Q psy12682 445 --WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPV-SVLQNGVKITNEPPK 494 (755)
Q Consensus 445 --wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~-~lLq~s~Kv~~Epp~ 494 (755)
.+..|.++++ .++-.+.|+|.....++. .|...|..+.+.+|+
T Consensus 116 ~~~~~aL~~~l~-------~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~ 161 (482)
T PRK04195 116 RGGARAILELIK-------KAKQPIILTANDPYDPSLRELRNACLMIEFKRLS 161 (482)
T ss_pred hhHHHHHHHHHH-------cCCCCEEEeccCccccchhhHhccceEEEecCCC
Confidence 3444545443 234467888865555665 788889999998875
No 61
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=34.60 E-value=2.5e+02 Score=27.57 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCC
Q psy12682 56 PVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGN 110 (755)
Q Consensus 56 ~~gLe~qlL~~vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ 110 (755)
..++|++.|.. ++...--+-+.-.+|-....+.+....++..++.+.|+++.|+
T Consensus 28 ~kqve~~~l~~-lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~ 81 (165)
T PF09602_consen 28 MKQVEQQTLKK-LKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGN 81 (165)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777766 4444444556666666666677777777777777777666655
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.53 E-value=4e+02 Score=29.45 Aligned_cols=112 Identities=12% Similarity=0.158 Sum_probs=68.1
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCC----C---------------CCceEEecCCC--ch-HHHHHHHHHHHh---cC-
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFG----G---------------SKFSALSLGQG--QG-PIAVKLINDGLK---KG- 431 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~----~---------------~~l~~iSLG~g--q~-~~A~~~I~~a~~---~G- 431 (755)
+++|.-++|+==+.....+|+..+.. . .....+-+..+ .. ...+..++.+.. .|
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~ 119 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSR 119 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCC
Confidence 47888888988888888888876420 0 01122222211 12 223444443321 23
Q ss_pred -CeEEecccccccch-hHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 432 -DWVLLQNCHLAKSW-MPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 432 -~WVlLqN~HL~~sw-l~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
.-|++.++|....- ...|-+.+++ ..++-++++++.....++..|..+|..+.+.|++
T Consensus 120 ~kviIIDEa~~l~~~a~naLLk~lEe-----~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~ 179 (363)
T PRK14961 120 FKVYLIDEVHMLSRHSFNALLKTLEE-----PPQHIKFILATTDVEKIPKTILSRCLQFKLKIIS 179 (363)
T ss_pred ceEEEEEChhhcCHHHHHHHHHHHhc-----CCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCC
Confidence 47889999987642 2234344442 3456677888766667999999999999999875
No 63
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.24 E-value=2.1e+02 Score=27.86 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=40.2
Q ss_pred cEEEecCCCCChHHH-HHHHHHhcCCCCCCceEEecCCCchHH-HH-HHHHHHHhcCCeEEec--ccccccchhHHHHHH
Q psy12682 378 PLIFLLTPGADPTAV-LLKFADDMGFGGSKFSALSLGQGQGPI-AV-KLINDGLKKGDWVLLQ--NCHLAKSWMPVLEKM 452 (755)
Q Consensus 378 Pii~ils~g~DP~~~-i~~lA~~~~~~~~~l~~iSLG~gq~~~-A~-~~I~~a~~~G~WVlLq--N~HL~~swl~~Le~i 452 (755)
-+|++-....|.+.. +.+++.+.+ ..+..+..+.+.|.. |. ..+ ...+|.||++= .+.+.++|+..+.+.
T Consensus 29 eiiVvddgS~d~t~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~~n~g~--~~~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 29 ELIISDDGSTDGTVEIIKEYIDKDP---FIIILIRNGKNLGVARNFESLL--QAADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred EEEEEeCCCCCCcHHHHHHHHhcCC---ceEEEEeCCCCccHHHHHHHHH--HhCCCCEEEEECCCcccChhHHHHHHHH
Confidence 366665555677755 455555432 244555555555532 22 222 34579999984 566777787766544
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=34.02 E-value=3.2e+02 Score=30.59 Aligned_cols=125 Identities=11% Similarity=0.144 Sum_probs=76.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCC------Cch-HHHHHHHHHHHh-cCCeEEeccccccc-----
Q psy12682 377 VPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQ------GQG-PIAVKLINDGLK-KGDWVLLQNCHLAK----- 443 (755)
Q Consensus 377 tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~------gq~-~~A~~~I~~a~~-~G~WVlLqN~HL~~----- 443 (755)
..+++.-+||+==|.....+|.+.+. .+..++.+. |++ .....+.+.|.. .+.-|+|.+++...
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~---~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~ 242 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNA---TFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTD 242 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCC---CEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhccccc
Confidence 35888889999888888889988764 555554332 222 234455666654 34678899988531
Q ss_pred ------ch-hHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhh---ceEeccCCcc-chHHHHHHHh
Q psy12682 444 ------SW-MPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQN---GVKITNEPPK-GLRANINRSY 504 (755)
Q Consensus 444 ------sw-l~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~---s~Kv~~Epp~-glk~nl~~~~ 504 (755)
.. -..+-.++..+.......+.+++.|+.....++..+++. ..++.+.+|. .-|..+.+.+
T Consensus 243 ~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~ 314 (389)
T PRK03992 243 SGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIH 314 (389)
T ss_pred CCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHH
Confidence 11 122444444443222345788999988778899999863 3566666664 3344444444
No 65
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.83 E-value=3.4e+02 Score=33.00 Aligned_cols=123 Identities=13% Similarity=0.186 Sum_probs=77.2
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCC-------------------CCCceEEec--CCCch-HHHHHHHHHHH-----hc
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFG-------------------GSKFSALSL--GQGQG-PIAVKLINDGL-----KK 430 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~-------------------~~~l~~iSL--G~gq~-~~A~~~I~~a~-----~~ 430 (755)
-+||.-++|+-=+.....||+..+.. +.....+-+ .++-+ ...+.+++.+. .+
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk 119 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGK 119 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCC
Confidence 47888888988888888888875321 001112222 12222 24555665442 23
Q ss_pred CCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHhc
Q psy12682 431 GDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSYL 505 (755)
Q Consensus 431 G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~~ 505 (755)
..-|+|.++|.... -...|-+.++ +.+++.+++|++....++|..|+.+|..+.+.+++ -+...+.+...
T Consensus 120 ~KVIIIDEad~Ls~~A~NALLKtLE-----EPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 120 YKVYIIDEVHMLSKSAFNAMLKTLE-----EPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred cEEEEEECccccCHHHHHHHHHHHH-----hCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 46888999997553 3444556665 34567788888877778999999999998877764 44555555543
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=33.68 E-value=4.5e+02 Score=32.77 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=40.4
Q ss_pred eCCCceEEEEeCCCCCCCChhhhhceEEEEeEeC-hhhHHHHHHHHHHhhhcccHHHHHHHHHHH
Q psy12682 22 YNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMIT-PVGLADQLLGTVVAKDRPDLEAEKNQLIVQ 85 (755)
Q Consensus 22 ~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtvT-~~gLe~qlL~~vv~~E~PeLe~~r~~L~~~ 85 (755)
..++-.++|+|... ..+.+-|.+|+.++.|..- .+.+. +.|..+++.|.-.++..--.++..
T Consensus 147 pP~~~~fIl~tt~~-~kLl~TIrSRc~~v~F~~l~~~~l~-~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 147 PPEHLKFIFATTEP-DKVIGTIRSRTHHYPFRLVPPEVMR-GYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred CCCCeEEEEEeCCh-hhhhHHHHhheeEEEeeCCCHHHHH-HHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45667778888443 3566789999999999854 44444 455667777766555554444433
No 67
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.52 E-value=5.7e+02 Score=30.45 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=73.1
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCC---------------------CCCceEEecCCC--ch-HHHHHHHHHHH-----h
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFG---------------------GSKFSALSLGQG--QG-PIAVKLINDGL-----K 429 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~---------------------~~~l~~iSLG~g--q~-~~A~~~I~~a~-----~ 429 (755)
+||.-++|.==+.....||+..+-. .....++-+... .+ ...+.+++.+. .
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~ 117 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQS 117 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcC
Confidence 5677777877777777777764310 112334433221 12 23444444443 2
Q ss_pred cCCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHh
Q psy12682 430 KGDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSY 504 (755)
Q Consensus 430 ~G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~ 504 (755)
...=+++.++|+... =...|-+.+| +..++.+++|++....++|..|.++|..+.+.+++ .+..-+.+..
T Consensus 118 ~~KVvIIDEah~Lt~~A~NALLK~LE-----Epp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~ 190 (584)
T PRK14952 118 RYRIFIVDEAHMVTTAGFNALLKIVE-----EPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARIC 190 (584)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHh-----cCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHH
Confidence 345678899997764 2334555555 34567787777765578999999999999998864 3444444443
No 68
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=32.73 E-value=5.5e+02 Score=27.88 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=31.9
Q ss_pred EEEeCCCCCCCChhhhhceEE-EEeEeChhhHHHHHHHHHHhhhcccHHH
Q psy12682 29 YITTKLRNPHYLPEIAVKVTL-LNFMITPVGLADQLLGTVVAKDRPDLEA 77 (755)
Q Consensus 29 ~L~Tk~~np~~~pei~~~vtv-INFtvT~~gLe~qlL~~vv~~E~PeLe~ 77 (755)
.+|++......--++..|..- -..+.+...+--+++..++..-.|-+|+
T Consensus 109 liT~r~~~~~~~~~vr~r~~~~~~~~~~~~~l~~~lld~i~d~~~~~le~ 158 (322)
T COG0598 109 LITIRHRPLPAFDRVRERLEKGTLLTRGADELLYALLDAIVDNYFPVLEQ 158 (322)
T ss_pred EEEEecCCCccHHHHHHHHhccccccCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444333333445555554 5667788888899999999888777663
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=31.82 E-value=4.4e+02 Score=30.80 Aligned_cols=122 Identities=9% Similarity=0.093 Sum_probs=75.5
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC-----------------------CCceEEecC--CCch-HHHHHHHHHHHh--
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG-----------------------SKFSALSLG--QGQG-PIAVKLINDGLK-- 429 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~-----------------------~~l~~iSLG--~gq~-~~A~~~I~~a~~-- 429 (755)
.+||.-++|+-=|....-+|+..+... .+...+-++ +..+ ...+..++.+..
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P 124 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP 124 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc
Confidence 478888889988888888888764310 011222222 1122 344556666542
Q ss_pred ---cCCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHH
Q psy12682 430 ---KGDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRS 503 (755)
Q Consensus 430 ---~G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~ 503 (755)
+..=|++.++|.... =+..|-+.++ +..+..++++.+....++|..|.++|..+.+.+++ .+..-+.+.
T Consensus 125 ~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-----epp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 125 LQGKHKIFIIDEVHMLSKGAFNALLKTLE-----EPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred ccCCcEEEEEEChhhcCHHHHHHHHHHHh-----hcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHH
Confidence 235678899997654 2334545554 34566777777666667999999999999888754 344444444
Q ss_pred h
Q psy12682 504 Y 504 (755)
Q Consensus 504 ~ 504 (755)
.
T Consensus 200 ~ 200 (507)
T PRK06645 200 T 200 (507)
T ss_pred H
Confidence 4
No 70
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=31.72 E-value=2.4e+02 Score=25.78 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCC-------CCCCCHHHHHHHHh
Q psy12682 74 DLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEG-------NILEDESAIQVLSS 123 (755)
Q Consensus 74 eLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g-------~ILdd~~lI~tL~~ 123 (755)
+.+.+...+.+.....+.+|+++.+++=..+...+. .+|+|+++++...+
T Consensus 32 ~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~ 88 (123)
T PF05524_consen 32 DIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHH
Confidence 677778888888888888888888886666655543 46899999887665
No 71
>PHA02244 ATPase-like protein
Probab=29.53 E-value=95 Score=34.67 Aligned_cols=52 Identities=6% Similarity=0.084 Sum_probs=38.0
Q ss_pred EEEeCCeeeeeCCCceEEEEeCCCC----------CCCChhhhhceEEEEeEeChhhHHHHHH
Q psy12682 12 SIKLGDTVIEYNDNFKFYITTKLRN----------PHYLPEIAVKVTLLNFMITPVGLADQLL 64 (755)
Q Consensus 12 ~I~igd~~id~~p~FrL~L~Tk~~n----------p~~~pei~~~vtvINFtvT~~gLe~qlL 64 (755)
.+.+.+..+..||+||++.++..+. ...++.+..|..+|+|---. .+|.++.
T Consensus 208 ~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 208 FFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDE-KIEHLIS 269 (383)
T ss_pred eEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCc-HHHHHHh
Confidence 5566677899999999999996532 33477888999999987643 5555443
No 72
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.48 E-value=2.9e+02 Score=30.20 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q psy12682 112 LEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHS 159 (755)
Q Consensus 112 Ldd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~ 159 (755)
=+-+.+|..|+.++.+..++..-+....+-.+++..-|+.|+-=|.|.
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL 173 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL 173 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999999999999999989888888899999999999888775
No 73
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=29.40 E-value=5.2e+02 Score=29.10 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=69.0
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCC--------------------CCCceEEecC-CCch-HHHHHHHHHHHhcC-----
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFG--------------------GSKFSALSLG-QGQG-PIAVKLINDGLKKG----- 431 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~--------------------~~~l~~iSLG-~gq~-~~A~~~I~~a~~~G----- 431 (755)
+||.-++|.--+.....||+...-. ...+..++-. ..-+ ...+.+++.+....
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~ 118 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRW 118 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCc
Confidence 6777778888777788887754221 1123334321 1111 23456666665432
Q ss_pred CeEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 432 DWVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 432 ~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
.-+++.++|-.. .-.+.|-+.+|+ +.++=.++|++.....++..|..+|..+.+.||+
T Consensus 119 kViiIDead~m~~~aanaLLk~LEe-----p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~ 177 (394)
T PRK07940 119 RIVVIEDADRLTERAANALLKAVEE-----PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPS 177 (394)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhc-----CCCCCeEEEEECChHHChHHHHhhCeEEECCCCC
Confidence 357889999664 333445555553 3444456677766678999999999999999885
No 74
>KOG0250|consensus
Probab=29.35 E-value=1.2e+03 Score=29.61 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=59.1
Q ss_pred ceEEEEeEeChhhHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------Hhh-CCCCC
Q psy12682 46 KVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQI-------------LSS-SEGNI 111 (755)
Q Consensus 46 ~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~-------------Ls~-s~g~I 111 (755)
|-.+++|++..+-=..+....=++.+-++++.+|.+.-..+.+.+..++++...+.+. |.+ +++.-
T Consensus 651 ~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~ 730 (1074)
T KOG0250|consen 651 RPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQ 730 (1074)
T ss_pred CccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5668888765432111222222233446666666666666666665555554444322 222 22222
Q ss_pred CCCHHHHHHH-HhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhHHHHHHH
Q psy12682 112 LEDESAIQVL-SSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIA 167 (755)
Q Consensus 112 Ldd~~lI~tL-~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~s~lyf~l~ 167 (755)
+| -..++.| ...+..-.+|++.-+..+++..++......-.++-..-+..++.++
T Consensus 731 ~~-~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~ 786 (1074)
T KOG0250|consen 731 VD-ISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQ 786 (1074)
T ss_pred cc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222222 2344445566666555566666666665555555554444444443
No 75
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.02 E-value=5.1e+02 Score=31.06 Aligned_cols=82 Identities=9% Similarity=-0.008 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhc-----CCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccC
Q psy12682 418 PIAVKLINDGLKK-----GDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNE 491 (755)
Q Consensus 418 ~~A~~~I~~a~~~-----G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~E 491 (755)
...+.+++++... -..|++.++|.... =...|.+.+| ++.++.++.+++....++...|..+|..+-+.
T Consensus 104 d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LE-----epp~~tifIL~tt~~~kIl~tI~SRc~iv~f~ 178 (614)
T PRK14971 104 DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLE-----EPPSYAIFILATTEKHKILPTILSRCQIFDFN 178 (614)
T ss_pred HHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHh-----CCCCCeEEEEEeCCchhchHHHHhhhheeecC
Confidence 3456666655432 24788999997654 3345666666 34567788888866678888999999999999
Q ss_pred Ccc--chHHHHHHHh
Q psy12682 492 PPK--GLRANINRSY 504 (755)
Q Consensus 492 pp~--glk~nl~~~~ 504 (755)
+++ .++.-+.+..
T Consensus 179 ~ls~~ei~~~L~~ia 193 (614)
T PRK14971 179 RIQVADIVNHLQYVA 193 (614)
T ss_pred CCCHHHHHHHHHHHH
Confidence 864 3455555443
No 76
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=28.51 E-value=1.5e+02 Score=32.48 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=43.9
Q ss_pred CeEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 432 DWVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 432 ~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
..+++.++|-+. .=-+.|=|.+| ++.++=.++|+|.....++..|..+|.++.+.||+
T Consensus 110 kV~iI~~ae~m~~~AaNaLLKtLE-----EPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~ 168 (319)
T PRK06090 110 RLFVIEPADAMNESASNALLKTLE-----EPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPS 168 (319)
T ss_pred eEEEecchhhhCHHHHHHHHHHhc-----CCCCCeEEEEEECChhhChHHHHhcceeEeCCCCC
Confidence 356778888655 33345666666 45677778888887788888999999999999886
No 77
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.50 E-value=7e+02 Score=29.62 Aligned_cols=121 Identities=12% Similarity=0.191 Sum_probs=73.1
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCC-------------------CCceEEec-CCC-ch-HHHHHHHHHHHh---cC--
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGG-------------------SKFSALSL-GQG-QG-PIAVKLINDGLK---KG-- 431 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~-------------------~~l~~iSL-G~g-q~-~~A~~~I~~a~~---~G-- 431 (755)
+||.-++|+==+.....||+..+-.. .....+-+ |.+ .+ ...+.+++.+.. .|
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~ 120 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRY 120 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCc
Confidence 46777788887888888887754210 01111111 111 12 234555555432 22
Q ss_pred CeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHh
Q psy12682 432 DWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSY 504 (755)
Q Consensus 432 ~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~ 504 (755)
.=+++.++|.... =...|-+.+|+ ..++.+++|++....++|..|+.+|..+-+.+++ .+...+....
T Consensus 121 KVvIIdev~~Lt~~a~naLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 121 KIFIIDEVHMLSTNAFNALLKTLEE-----PPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred eEEEEEChhhCCHHHHHHHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHH
Confidence 3578899997653 33456666663 4567788877766678999999999999998764 3444444433
No 78
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=28.49 E-value=2.9e+02 Score=27.00 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=40.0
Q ss_pred ccEEEecCCCCChHHH-HHHHHHhcCCCCCCceEEecCCCch--HHHH---HHHHHHHhcCCeEEecc--cccccchhHH
Q psy12682 377 VPLIFLLTPGADPTAV-LLKFADDMGFGGSKFSALSLGQGQG--PIAV---KLINDGLKKGDWVLLQN--CHLAKSWMPV 448 (755)
Q Consensus 377 tPii~ils~g~DP~~~-i~~lA~~~~~~~~~l~~iSLG~gq~--~~A~---~~I~~a~~~G~WVlLqN--~HL~~swl~~ 448 (755)
..+|++-....|.+.. +.++++... ..++..+.-....| ..|. ..++. .+|.|+++=| +.+.+.|+..
T Consensus 31 ~eiivVdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~n~g~~~--a~~d~i~~~D~D~~~~~~~l~~ 106 (196)
T cd02520 31 YEILFCVQDEDDPAIPVVRKLIAKYP--NVDARLLIGGEKVGINPKVNNLIKGYEE--ARYDILVISDSDISVPPDYLRR 106 (196)
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHCC--CCcEEEEecCCcCCCCHhHHHHHHHHHh--CCCCEEEEECCCceEChhHHHH
Confidence 4678887777887755 456666543 12344444433222 2222 23332 4799999955 5566778766
Q ss_pred HH
Q psy12682 449 LE 450 (755)
Q Consensus 449 Le 450 (755)
+-
T Consensus 107 l~ 108 (196)
T cd02520 107 MV 108 (196)
T ss_pred HH
Confidence 53
No 79
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.33 E-value=4.9e+02 Score=24.18 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=51.9
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHH-----------HHHHHHHH
Q psy12682 73 PDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQE-----------KQAVAEVT 141 (755)
Q Consensus 73 PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~-----------kl~e~~~~ 141 (755)
..+|.+...+..+++....+-..+.+.|+.+....+.- ......+..++....++.. |-++.++.
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 45677777777888888888888888888877665411 2222333333333333333 55677788
Q ss_pred HHHHHHHHhhchHHHH
Q psy12682 142 EKSIDAARLEYTPIAA 157 (755)
Q Consensus 142 ~~~i~~~r~~Y~pvA~ 157 (755)
+.+|...++.|+.-..
T Consensus 102 ~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 102 RADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888876443
No 80
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=28.10 E-value=1.6e+02 Score=32.18 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=44.8
Q ss_pred CeEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCccc
Q psy12682 432 DWVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKG 495 (755)
Q Consensus 432 ~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~g 495 (755)
..|++.+++-+. +=.+.|=|++| ++.++-.++|+|.....++..|..+|..+.+-+|+-
T Consensus 115 kV~iI~~ae~m~~~AaNaLLKtLE-----EPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~ 174 (319)
T PRK08769 115 QVVIVDPADAINRAACNALLKTLE-----EPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPA 174 (319)
T ss_pred EEEEeccHhhhCHHHHHHHHHHhh-----CCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCH
Confidence 466777777443 34455666666 456788899999888889999999999999998753
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.82 E-value=6e+02 Score=29.66 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=73.8
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCC--------------------CCCceEEecCCCch-HHHHHHHHHHH-----hcCC
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFG--------------------GSKFSALSLGQGQG-PIAVKLINDGL-----KKGD 432 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~--------------------~~~l~~iSLG~gq~-~~A~~~I~~a~-----~~G~ 432 (755)
+||.-+||+-=|.....+|+..... ...+..+.-....+ ...+.+++.+. ....
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~k 118 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRK 118 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCe
Confidence 5888888988888888888775320 01233333221222 23344444332 2446
Q ss_pred eEEecccccccchhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHh
Q psy12682 433 WVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSY 504 (755)
Q Consensus 433 WVlLqN~HL~~swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~ 504 (755)
.|+|.++|.... ..+..++..+. +..++.++++++.....++..+..+|..+.+.|++ .+..-+.+..
T Consensus 119 VVIIDEad~ls~--~a~naLLk~LE--ep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 119 VYILDEAHMMSK--SAFNALLKTLE--EPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred EEEEECccccCH--HHHHHHHHHHH--hCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence 889999996542 12333333332 34567788888766678999999999999999864 3455555544
No 82
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=27.73 E-value=2.6e+02 Score=28.07 Aligned_cols=72 Identities=11% Similarity=0.215 Sum_probs=40.8
Q ss_pred cEEEecCCCCChH--HHHHHHHHhcCCCCCCceEEecCCCch--HHH-HHHHHHHHhcCCeEEecccc--cccchhHHHH
Q psy12682 378 PLIFLLTPGADPT--AVLLKFADDMGFGGSKFSALSLGQGQG--PIA-VKLINDGLKKGDWVLLQNCH--LAKSWMPVLE 450 (755)
Q Consensus 378 Pii~ils~g~DP~--~~i~~lA~~~~~~~~~l~~iSLG~gq~--~~A-~~~I~~a~~~G~WVlLqN~H--L~~swl~~Le 450 (755)
-+|++-....|++ ..+.+++++.+ .++..+......| ..| ...++.|..+|.||++=|+. +.+.|+..+-
T Consensus 30 eiiVvdd~s~D~t~~~~i~~~~~~~~---~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~ 106 (236)
T cd06435 30 EVIVIDNNTKDEALWKPVEAHCAQLG---ERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVIDADYQVEPDWLKRLV 106 (236)
T ss_pred EEEEEeCCCCchhHHHHHHHHHHHhC---CcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHH
Confidence 4566655556776 35667776644 2555565543222 222 34455554458899995544 6667776654
Q ss_pred HH
Q psy12682 451 KM 452 (755)
Q Consensus 451 ~i 452 (755)
..
T Consensus 107 ~~ 108 (236)
T cd06435 107 PI 108 (236)
T ss_pred HH
Confidence 43
No 83
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.42 E-value=1.4e+02 Score=30.52 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=17.7
Q ss_pred hhcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12682 70 KDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQIL 104 (755)
Q Consensus 70 ~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~L 104 (755)
..-|+++++-.++..+.++...+..+.-..+=+.+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~ 127 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKV 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34466666666666555555444443333333333
No 84
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=26.67 E-value=3.1e+02 Score=24.98 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=41.6
Q ss_pred EEEecCCCCChHHH-HHHHHHhcCCCCCCceEEecCCCchH-HH-HHHHHHHHhcCCeEEec--ccccccchhHHHHHHH
Q psy12682 379 LIFLLTPGADPTAV-LLKFADDMGFGGSKFSALSLGQGQGP-IA-VKLINDGLKKGDWVLLQ--NCHLAKSWMPVLEKMC 453 (755)
Q Consensus 379 ii~ils~g~DP~~~-i~~lA~~~~~~~~~l~~iSLG~gq~~-~A-~~~I~~a~~~G~WVlLq--N~HL~~swl~~Le~il 453 (755)
+|++-....|.+.. +.++++ . ..+++.+......|. .| ...++.| .|.||++- ++-+.+.|+..+-+.+
T Consensus 30 iivvdd~s~d~~~~~~~~~~~-~---~~~i~~i~~~~n~g~~~~~n~~~~~a--~~~~i~~ld~D~~~~~~~l~~l~~~~ 103 (169)
T PF00535_consen 30 IIVVDDGSTDETEEILEEYAE-S---DPNIRYIRNPENLGFSAARNRGIKHA--KGEYILFLDDDDIISPDWLEELVEAL 103 (169)
T ss_dssp EEEEECS-SSSHHHHHHHHHC-C---STTEEEEEHCCCSHHHHHHHHHHHH----SSEEEEEETTEEE-TTHHHHHHHHH
T ss_pred EEEeccccccccccccccccc-c---cccccccccccccccccccccccccc--ceeEEEEeCCCceEcHHHHHHHHHHH
Confidence 55555544555544 444444 2 247888999877664 33 3455554 56699985 4557778888876666
Q ss_pred hh
Q psy12682 454 ES 455 (755)
Q Consensus 454 e~ 455 (755)
+.
T Consensus 104 ~~ 105 (169)
T PF00535_consen 104 EK 105 (169)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 85
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=25.71 E-value=5.9e+02 Score=30.43 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=74.7
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC------------------------CCceEEecC--CCch-HHHHHHHHHHHh-
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG------------------------SKFSALSLG--QGQG-PIAVKLINDGLK- 429 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~------------------------~~l~~iSLG--~gq~-~~A~~~I~~a~~- 429 (755)
.+||.-++|+==+....-+|+..+... .+..++-+. +.-+ ...+.+++.+..
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~ 127 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYR 127 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhc
Confidence 477777788877777777887654210 011111111 1111 234455555432
Q ss_pred ----cCCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHH
Q psy12682 430 ----KGDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINR 502 (755)
Q Consensus 430 ----~G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~ 502 (755)
...=|++.++|.... =...|-+.+| +..++..+++++....++|..|..+|..+.+.+++ .+..-+.+
T Consensus 128 P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-----ePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~ 202 (598)
T PRK09111 128 PVSARYKVYIIDEVHMLSTAAFNALLKTLE-----EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSR 202 (598)
T ss_pred hhcCCcEEEEEEChHhCCHHHHHHHHHHHH-----hCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHH
Confidence 234688899997763 2344555555 45677888888866667999999999999998854 45555555
Q ss_pred Hh
Q psy12682 503 SY 504 (755)
Q Consensus 503 ~~ 504 (755)
..
T Consensus 203 i~ 204 (598)
T PRK09111 203 IA 204 (598)
T ss_pred HH
Confidence 44
No 86
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.44 E-value=1.5e+02 Score=32.39 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred hhhcccHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12682 69 AKDRPDLEAEKNQLIVQGADNKRQLKEIED 98 (755)
Q Consensus 69 ~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd 98 (755)
..|--+|+++-++|.+....++.++.++++
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777778888887788877776654
No 87
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.96 E-value=5.6e+02 Score=25.26 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=2.5
Q ss_pred HHHhhch
Q psy12682 147 AARLEYT 153 (755)
Q Consensus 147 ~~r~~Y~ 153 (755)
..+..+.
T Consensus 162 ~~~~~~~ 168 (191)
T PF04156_consen 162 ELRSQLE 168 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=24.56 E-value=6.9e+02 Score=27.03 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=66.4
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCC---------------------CCCceEEecCCCch-HHHHHHHHHHHhc-----
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFG---------------------GSKFSALSLGQGQG-PIAVKLINDGLKK----- 430 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~---------------------~~~l~~iSLG~gq~-~~A~~~I~~a~~~----- 430 (755)
.+||.-+||+=-+.....+|+...-. ..++..+.=+.+.+ .....+++.+...
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~ 117 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGK 117 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCC
Confidence 36777788888888888888775310 01122222121222 2345555554332
Q ss_pred CCeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCccc
Q psy12682 431 GDWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKG 495 (755)
Q Consensus 431 G~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~g 495 (755)
...|++.++|.... =...|-+.++ +..++..+++++.....++..+..+|..+.+.||+.
T Consensus 118 ~~vviidea~~l~~~~~~~Ll~~le-----~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~ 178 (355)
T TIGR02397 118 YKVYIIDEVHMLSKSAFNALLKTLE-----EPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPL 178 (355)
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHh-----CCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCH
Confidence 24678899885532 1223333333 345678888887655667788999999988887643
No 89
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=24.23 E-value=6.4e+02 Score=26.98 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC--CCceEEec---------------------------CCCchHHHHHHHHHHH
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG--SKFSALSL---------------------------GQGQGPIAVKLINDGL 428 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~--~~l~~iSL---------------------------G~gq~~~A~~~I~~a~ 428 (755)
+++|.-+||+==+..+..+|++..-.. .++..++. +..........++...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Q ss_pred hcCCe------EEecccccc-cchhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 429 KKGDW------VLLQNCHLA-KSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 429 ~~G~W------VlLqN~HL~-~swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
..... |+|.++|.. ......|.++++ +..++.|+.+++...+.++..|..+|..+.+.||+
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-----~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~ 185 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALREDAQQALRRIME-----QYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPT 185 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-----hccCCCeEEEEeCChhhCchhhcCCceEEEecCCC
No 90
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=24.19 E-value=6.4e+02 Score=30.89 Aligned_cols=120 Identities=13% Similarity=0.192 Sum_probs=70.0
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCC----------------CCCceEEecCC-C-ch-HHHHHHHHHHHhc---CC--eE
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFG----------------GSKFSALSLGQ-G-QG-PIAVKLINDGLKK---GD--WV 434 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~----------------~~~l~~iSLG~-g-q~-~~A~~~I~~a~~~---G~--WV 434 (755)
.||.-++|+==+.....||+..... +.++..+-+.. + .+ ..++.+++.+... |. =+
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~ 122 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIY 122 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEE
Confidence 5677777776666667777654320 01222232211 1 22 2355666655532 33 46
Q ss_pred Eecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHH
Q psy12682 435 LLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRS 503 (755)
Q Consensus 435 lLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~ 503 (755)
++.++|.... =...|-+.+| ++.+...+++++.....+|..|+.+|..+.+.|++ .+..-+.+.
T Consensus 123 IIDEa~~LT~~A~NALLKtLE-----EPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~i 189 (725)
T PRK07133 123 IIDEVHMLSKSAFNALLKTLE-----EPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFI 189 (725)
T ss_pred EEEChhhCCHHHHHHHHHHhh-----cCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHH
Confidence 6799997653 2334444454 34566777777765568999999999999998863 344444443
No 91
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=23.85 E-value=7.3e+02 Score=25.34 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchH-HHHHHhHHHHHHHHhh
Q psy12682 92 QLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTP-IAAHSTVLFFCIANLG 170 (755)
Q Consensus 92 ~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~p-vA~~~s~lyf~l~~L~ 170 (755)
++...-|++-..+..+. .-|.|-+=...++.+|..-.+.+.+++ .+..++.+++..|.. ++.|++.==.+-.-|.
T Consensus 6 ~~~~~~d~lq~~i~~as-~~lNd~TGYs~Ie~LK~~i~~~E~~l~---~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLq 81 (207)
T PF05546_consen 6 KLSFYMDSLQETIFTAS-QALNDVTGYSEIEKLKKSIEELEDELE---AARQEVREAKAAYDDAIQQRSSSQREVNELLQ 81 (207)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhccChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444333331 333343446778888876666555554 455688888999955 6667665555555566
Q ss_pred cCCCcccccHHHHHHHHHH
Q psy12682 171 NIDPMYQYSLVWFDNLYRM 189 (755)
Q Consensus 171 ~i~~mYqfSL~~f~~lf~~ 189 (755)
.-+.==--.|+-|..++..
T Consensus 82 RK~sWs~~DleRFT~Lyr~ 100 (207)
T PF05546_consen 82 RKHSWSPADLERFTELYRN 100 (207)
T ss_pred cccCCChHHHHHHHHHHHh
Confidence 6555445578899988865
No 92
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.76 E-value=6.4e+02 Score=25.34 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q psy12682 129 NEIQEKQAVAEVTEKSIDAARLEYTPIAA 157 (755)
Q Consensus 129 ~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~ 157 (755)
.+|.+-...++.+.+++...+..|..+|.
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F~~~~a 187 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEFQSVAA 187 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555556777778888888888887764
No 93
>KOG3769|consensus
Probab=23.68 E-value=9.5e+02 Score=25.98 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=54.7
Q ss_pred hHHHHHH--HHHhhccccchHHHHHHHHHHhCCCccCCCccchhhhhccCCCCccEEEecCCCCChHHHHHHHHHhcCCC
Q psy12682 326 DVFQKLC--VLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFG 403 (755)
Q Consensus 326 ~~fqkll--lir~lRpdrl~~a~~~~v~~~lG~~f~~~~~~~l~~~~~~s~~~tPii~ils~g~DP~~~i~~lA~~~~~~ 403 (755)
..+.+.+ ++-..-+++....+++||..++-.+ .++..++|. -.+|+..+.++++++|.+
T Consensus 188 ess~~aI~Al~~~~~~ek~~~~v~dFI~~qi~~k-----~L~~~~m~q--------------l~~P~~~L~~lckr~~l~ 248 (333)
T KOG3769|consen 188 ESSRRAIGALLGSVGLEKGFNFVRDFINDQILSK-----DLDPREMWQ--------------LQWPRRLLSRLCKRRGLK 248 (333)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh-----ccchHhhcc--------------ccchHHHHHHHHHHcCCC
Confidence 3444443 4667789999999999999886432 133335552 368999999999988751
Q ss_pred --------------CCCceEE-------ecCCCchHHHHHHHHHHHh
Q psy12682 404 --------------GSKFSAL-------SLGQGQGPIAVKLINDGLK 429 (755)
Q Consensus 404 --------------~~~l~~i-------SLG~gq~~~A~~~I~~a~~ 429 (755)
...+.+| -+|+|+|+-..-+-++|+.
T Consensus 249 epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~ 295 (333)
T KOG3769|consen 249 EPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAAR 295 (333)
T ss_pred CchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHH
Confidence 1123333 4799988655555555554
No 94
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.48 E-value=7.7e+02 Score=29.13 Aligned_cols=123 Identities=13% Similarity=0.190 Sum_probs=72.9
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCC----C-----------------CCceEEecCCCch-HHHHHHHHHHH---hcC-
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFG----G-----------------SKFSALSLGQGQG-PIAVKLINDGL---KKG- 431 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~----~-----------------~~l~~iSLG~gq~-~~A~~~I~~a~---~~G- 431 (755)
.+||.-++|+-=+.....+|+..+.. . ..+..+.-.+.-+ ...+.+++.+. ..|
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~ 119 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGR 119 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCC
Confidence 46788888988888888888865420 0 0121221111111 23344555443 223
Q ss_pred -CeEEecccccccc-hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc--chHHHHHHHhc
Q psy12682 432 -DWVLLQNCHLAKS-WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK--GLRANINRSYL 505 (755)
Q Consensus 432 -~WVlLqN~HL~~s-wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~~ 505 (755)
.=+++.++|.... =...|-+.+|+ ..+.-++++++.-..++|..|+.+|..+.+.+++ .+..-+.+...
T Consensus 120 ~kViIIDEa~~ls~~a~naLLK~LEe-----pp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 120 YKVYLIDEVHMLSKQSFNALLKTLEE-----PPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILA 192 (546)
T ss_pred cEEEEEechhhccHHHHHHHHHHHhc-----CCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHH
Confidence 3567799996554 33445555553 3455566666655566888899999999999874 45555665543
No 95
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.40 E-value=7.4e+02 Score=28.65 Aligned_cols=122 Identities=12% Similarity=0.135 Sum_probs=72.6
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCC-------------------CCceEEecCC--Cch-HHHHHHHHHHH-----hcC
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGG-------------------SKFSALSLGQ--GQG-PIAVKLINDGL-----KKG 431 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~-------------------~~l~~iSLG~--gq~-~~A~~~I~~a~-----~~G 431 (755)
+||.-+||+==|.....+|+..+... .....+.+.. ..+ ...+++++.+. ...
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~ 118 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKY 118 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCe
Confidence 78888899988888888888754210 0112233322 222 23344444332 123
Q ss_pred CeEEecccccccchhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCc--cchHHHHHHHh
Q psy12682 432 DWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPP--KGLRANINRSY 504 (755)
Q Consensus 432 ~WVlLqN~HL~~swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp--~glk~nl~~~~ 504 (755)
.=|++.++|.... ..+..++..+. +.+++..+++++.....+|..|..+|..+.+.|+ ..++.-+.+..
T Consensus 119 kVvIIDE~h~Lt~--~a~~~LLk~LE--~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 119 KVYIIDEVHMLTK--EAFNALLKTLE--EPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred EEEEEEChHHhHH--HHHHHHHHHHH--hCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHH
Confidence 4677899996532 11223333331 3456777777765445799999999999999887 45566666554
No 96
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=23.37 E-value=1.4e+02 Score=25.63 Aligned_cols=40 Identities=28% Similarity=0.313 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCC
Q psy12682 73 PDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILE 113 (755)
Q Consensus 73 PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILd 113 (755)
.++.++|.+|-.+..+.++++-++|-.-|+ =+..-|||+.
T Consensus 5 ~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~-~~~~~GNiik 44 (80)
T PF09340_consen 5 KELLQKKKKLEKDLAALEKQIYDKETSYLE-DTSPYGNIIK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcCCCCee
Confidence 466778888888888888888888888887 1123488863
No 97
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=23.32 E-value=6.2e+02 Score=27.53 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=53.6
Q ss_pred CCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHH-----------------HHHHhcCCeEEec
Q psy12682 375 CTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLI-----------------NDGLKKGDWVLLQ 437 (755)
Q Consensus 375 ~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I-----------------~~a~~~G~WVlLq 437 (755)
...|+++.-.+|+-=......+-.........+..|..+.-.+..++..+ .-...+|+=++|.
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~ 107 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD 107 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeC
Confidence 34688888888776443222221111111246666666654433333322 0123468889999
Q ss_pred ccccccchhH-HHHHHHhhhC------CCCCCCCceEEEEeCC
Q psy12682 438 NCHLAKSWMP-VLEKMCESLS------PETTHPDFRLWLTSYP 473 (755)
Q Consensus 438 N~HL~~swl~-~Le~ile~l~------~~~~h~~FRLwLts~p 473 (755)
|++..+..+. .|-++++.-. ....+.++|+..|+..
T Consensus 108 ~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 108 ELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 9998776553 3555554311 0122357999888754
No 98
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.23 E-value=4.5e+02 Score=32.52 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=5.7
Q ss_pred HHhhhhchHHHHHHH
Q psy12682 121 LSSSKVLSNEIQEKQ 135 (755)
Q Consensus 121 L~~~K~~s~eI~~kl 135 (755)
+++.|.++.++-+++
T Consensus 579 l~~a~~~~~~~i~~l 593 (782)
T PRK00409 579 IKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333343333333333
No 99
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=22.95 E-value=3.8e+02 Score=27.07 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=37.2
Q ss_pred EEEecCCCCChHHHHH-HHHHhcCCCCCCceEEecCCCchH-HH-HHHHHHHHhcCCeEEecc--cccccchhHHHHHH
Q psy12682 379 LIFLLTPGADPTAVLL-KFADDMGFGGSKFSALSLGQGQGP-IA-VKLINDGLKKGDWVLLQN--CHLAKSWMPVLEKM 452 (755)
Q Consensus 379 ii~ils~g~DP~~~i~-~lA~~~~~~~~~l~~iSLG~gq~~-~A-~~~I~~a~~~G~WVlLqN--~HL~~swl~~Le~i 452 (755)
+|++-....|++..+. +++.+ ++..+..+...|. .| ...++. ..|.||++-+ +.+.+.|+.++-..
T Consensus 63 iivvdd~s~d~t~~~~~~~~~~------~v~~i~~~~~~g~~~a~n~gi~~--a~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 63 IIVVSDGSTDGTAEIAREYADK------GVKLLRFPERRGKAAALNRALAL--ATGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred EEEEECCCCccHHHHHHHHhhC------cEEEEEcCCCCChHHHHHHHHHH--cCCCEEEEEccccCcCHHHHHHHHHH
Confidence 5666666667776544 33322 3556666555553 33 334443 3689999955 45666676665433
No 100
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=22.90 E-value=6.7e+02 Score=27.35 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=54.7
Q ss_pred CCccEEEecCCCCChHHH---HHHHHHhcCCCCCCceEEecCCCchHHHHHHHH-----------------HHHhcCCeE
Q psy12682 375 CTVPLIFLLTPGADPTAV---LLKFADDMGFGGSKFSALSLGQGQGPIAVKLIN-----------------DGLKKGDWV 434 (755)
Q Consensus 375 ~~tPii~ils~g~DP~~~---i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~-----------------~a~~~G~WV 434 (755)
...|+++.-.+|+-=... |...+... ...+..|..+.-.+...+..+- -...+|+=+
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~---~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRW---QGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCcc---CCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEE
Confidence 356888888887653322 22222111 2467777766554444443330 113468899
Q ss_pred EecccccccchhH-HHHHHHhhhC------CCCCCCCceEEEEeCC
Q psy12682 435 LLQNCHLAKSWMP-VLEKMCESLS------PETTHPDFRLWLTSYP 473 (755)
Q Consensus 435 lLqN~HL~~swl~-~Le~ile~l~------~~~~h~~FRLwLts~p 473 (755)
+|.+++..+.-+. .|-+.++.-. ....+.++|+..++..
T Consensus 98 ~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 98 FLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred EeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 9999997765543 3555554311 1234578999998854
No 101
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=22.65 E-value=5.3e+02 Score=24.81 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=37.3
Q ss_pred cEEEecCCCCChH-HHHH-HHHHhcCCCCCCceEEecCCCchH-HHH-HHHHHHHhcCCeEEec--ccccccchhHHHHH
Q psy12682 378 PLIFLLTPGADPT-AVLL-KFADDMGFGGSKFSALSLGQGQGP-IAV-KLINDGLKKGDWVLLQ--NCHLAKSWMPVLEK 451 (755)
Q Consensus 378 Pii~ils~g~DP~-~~i~-~lA~~~~~~~~~l~~iSLG~gq~~-~A~-~~I~~a~~~G~WVlLq--N~HL~~swl~~Le~ 451 (755)
-+|++-....|++ ..+. .++.+. .++..+......+. .|. ..++. ..|.|+++- ++.+.+.|+..+.+
T Consensus 33 eiivvd~gs~d~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~a~n~g~~~--a~~d~i~~ld~D~~~~~~~l~~~~~ 106 (202)
T cd04184 33 ELCIADDASTDPEVKRVLKKYAAQD----PRIKVVFREENGGISAATNSALEL--ATGEFVALLDHDDELAPHALYEVVK 106 (202)
T ss_pred EEEEEeCCCCChHHHHHHHHHHhcC----CCEEEEEcccCCCHHHHHHHHHHh--hcCCEEEEECCCCcCChHHHHHHHH
Confidence 3555544445654 3333 333332 24555655554553 333 34443 368999985 56677788766544
Q ss_pred HH
Q psy12682 452 MC 453 (755)
Q Consensus 452 il 453 (755)
.+
T Consensus 107 ~~ 108 (202)
T cd04184 107 AL 108 (202)
T ss_pred HH
Confidence 33
No 102
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=22.36 E-value=3.6e+02 Score=31.65 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=25.3
Q ss_pred eCCCceEEEEeCCCCCCCChhhhhceEEEEeEe
Q psy12682 22 YNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMI 54 (755)
Q Consensus 22 ~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtv 54 (755)
+..+||++..|...--..+|.+.+|+..|.|..
T Consensus 230 ~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~p 262 (531)
T TIGR02902 230 LPADFRLIGATTRNPEEIPPALRSRCVEIFFRP 262 (531)
T ss_pred cccceEEEEEecCCcccCChHHhhhhheeeCCC
Confidence 567899998876533357899999998888854
No 103
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.29 E-value=4.1e+02 Score=30.21 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q psy12682 74 DLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDA 147 (755)
Q Consensus 74 eLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~ 147 (755)
+++++|.+++.+..+.+.+..++-++|=..... + +| .+..+.++.++.+++++.++..+++++
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~--~---~~------~~~l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRK--G---ED------AEALIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C---Cc------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888888888777432211 1 11 223444555566666555555555444
No 104
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=22.18 E-value=4.3e+02 Score=25.14 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=37.8
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchH-HH-HHHHHHHHhcCCeEEecccc--cccchhHHH
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGP-IA-VKLINDGLKKGDWVLLQNCH--LAKSWMPVL 449 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~-~A-~~~I~~a~~~G~WVlLqN~H--L~~swl~~L 449 (755)
-+|++-....|.+..+.+-..... .++..+..++..|. .| ...++. ..|.||++-+.+ +.+.|+..+
T Consensus 31 eiivvdd~s~d~t~~~~~~~~~~~---~~i~~i~~~~n~G~~~a~n~g~~~--a~~d~i~~~D~D~~~~~~~l~~l 101 (181)
T cd04187 31 EIIFVDDGSTDRTLEILRELAARD---PRVKVIRLSRNFGQQAALLAGLDH--ARGDAVITMDADLQDPPELIPEM 101 (181)
T ss_pred EEEEEeCCCCccHHHHHHHHHhhC---CCEEEEEecCCCCcHHHHHHHHHh--cCCCEEEEEeCCCCCCHHHHHHH
Confidence 466666555677665544333222 25666766665553 33 334443 368999996544 455666654
No 105
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.12 E-value=4.2e+02 Score=25.69 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=39.3
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchH--HHHHHHHHHH-hcCCeEEecc--cccccchhHHHHHH
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGP--IAVKLINDGL-KKGDWVLLQN--CHLAKSWMPVLEKM 452 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~--~A~~~I~~a~-~~G~WVlLqN--~HL~~swl~~Le~i 452 (755)
.+|++-....|.+..+.+ +.+. ..++..+......|. .....++.|. ..|.||++=| +-+.+.|+.++.+.
T Consensus 28 eiiivD~~s~d~t~~~~~---~~~~-~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~ 103 (202)
T cd04185 28 HIIVIDNASTDGTAEWLT---SLGD-LDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAY 103 (202)
T ss_pred eEEEEECCCCcchHHHHH---HhcC-CCceEEEECccccchhhHHHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHH
Confidence 466665555566654433 2221 112456655554442 2234455554 3688999854 44666788776655
Q ss_pred Hh
Q psy12682 453 CE 454 (755)
Q Consensus 453 le 454 (755)
++
T Consensus 104 ~~ 105 (202)
T cd04185 104 AD 105 (202)
T ss_pred Hh
Confidence 43
No 106
>PRK11637 AmiB activator; Provisional
Probab=22.11 E-value=6.3e+02 Score=28.64 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=9.8
Q ss_pred cHHHHHHHHHHHHHHhHHHHH
Q psy12682 74 DLEAEKNQLIVQGADNKRQLK 94 (755)
Q Consensus 74 eLe~~r~~L~~~~~~~k~~L~ 94 (755)
+++++..++.+++.+.+.+++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 107
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=21.77 E-value=5.3e+02 Score=24.83 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=34.5
Q ss_pred cEEEecCCC-CChHHHH-HHHHHhcCCCCCCceEEecCCCchH-HHH-HHHHHHHhcCCeEEecccc--cccchhHHH
Q psy12682 378 PLIFLLTPG-ADPTAVL-LKFADDMGFGGSKFSALSLGQGQGP-IAV-KLINDGLKKGDWVLLQNCH--LAKSWMPVL 449 (755)
Q Consensus 378 Pii~ils~g-~DP~~~i-~~lA~~~~~~~~~l~~iSLG~gq~~-~A~-~~I~~a~~~G~WVlLqN~H--L~~swl~~L 449 (755)
-+|++-... .|-+..+ .+++++. ++..+....+.|. .|. ..++. ..|.||++=|.. +.+.|+..+
T Consensus 31 eiiivdd~ss~d~t~~~~~~~~~~~-----~i~~i~~~~n~G~~~a~N~g~~~--a~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 31 EVVLVKDGPVTQSLNEVLEEFKRKL-----PLKVVPLEKNRGLGKALNEGLKH--CTYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred EEEEEECCCCchhHHHHHHHHHhcC-----CeEEEEcCccccHHHHHHHHHHh--cCCCEEEEeCCccccCcHHHHHH
Confidence 355554433 3445543 3444433 3566776665553 333 33433 379999996655 445555543
No 108
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=21.58 E-value=6.6e+02 Score=29.19 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=58.7
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHH-----------------HHHHhcCCeEE
Q psy12682 373 SVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLI-----------------NDGLKKGDWVL 435 (755)
Q Consensus 373 s~~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I-----------------~~a~~~G~WVl 435 (755)
.....|+++.-.+|+--+..-..+..........+..|..+.-.+..++..+ .-...+|+.++
T Consensus 207 a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ 286 (509)
T PRK05022 207 AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLF 286 (509)
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEE
Confidence 4456799999888887554433333322212346777766654433333221 01235789999
Q ss_pred ecccccccchhH-HHHHHHhhhC------CCCCCCCceEEEEeCC
Q psy12682 436 LQNCHLAKSWMP-VLEKMCESLS------PETTHPDFRLWLTSYP 473 (755)
Q Consensus 436 LqN~HL~~swl~-~Le~ile~l~------~~~~h~~FRLwLts~p 473 (755)
|.+++..+..+. .|-++++.-. ......++|++.++..
T Consensus 287 ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 287 LDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred ecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 999998886554 3555554311 1123458999998854
No 109
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=21.56 E-value=2.1e+02 Score=28.45 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCC--C-C----------HHHHHHHHhhhh---------chHHHHH
Q psy12682 76 EAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNIL--E-D----------ESAIQVLSSSKV---------LSNEIQE 133 (755)
Q Consensus 76 e~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~IL--d-d----------~~lI~tL~~~K~---------~s~eI~~ 133 (755)
.++|.+|+.+..+.-+...+.|.++|..+.+...... . . .++=+.|.+... ......+
T Consensus 43 l~rR~dli~~Lv~~v~~y~~~E~~~l~~v~~~R~~~~~~~~~~~~~~~~~~~~~l~~al~~l~~~~e~yP~Lka~~~~~~ 122 (186)
T PF04011_consen 43 LQRRHDLIPNLVEIVKSYAKHEKETLTKVTKARSQANNLSDSADIQEFQQAEAELSQALSRLLAVVENYPELKADENFQQ 122 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH---H--SHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 3778888888777777777788888877775432111 0 0 011111111110 1123444
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHH
Q psy12682 134 KQAVAEVTEKSIDAARLEYTPIAA 157 (755)
Q Consensus 134 kl~e~~~~~~~i~~~r~~Y~pvA~ 157 (755)
-+.+.+.++.+|..+|+.|-.-+.
T Consensus 123 l~~~l~~~E~~I~~aR~~YN~av~ 146 (186)
T PF04011_consen 123 LMAQLEETENRIAAARRAYNDAVR 146 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888865443
No 110
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=21.45 E-value=2.4e+02 Score=30.35 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=43.7
Q ss_pred eEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 433 WVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 433 WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
-+++.++|-.. +--+.|=|++| ++.++-.++|+|.....+|..|..+|..+.+-|+.
T Consensus 98 v~ii~~ad~mt~~AaNaLLK~LE-----EPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~ 155 (290)
T PRK05917 98 IYIIHEADRMTLDAISAFLKVLE-----DPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE 155 (290)
T ss_pred EEEEechhhcCHHHHHHHHHHhh-----cCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh
Confidence 45668888554 34445667776 46678888999988899999999999999998753
No 111
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.39 E-value=9.7e+02 Score=27.89 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=29.0
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHhHHHHHHHH
Q psy12682 119 QVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIAN 168 (755)
Q Consensus 119 ~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~s~lyf~l~~ 168 (755)
..+...+....+++.++++.+....+++...+.|.-+..+...+...+..
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~ 348 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556666666666666666666666666666555555444333
No 112
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.78 E-value=1.6e+02 Score=26.38 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=28.4
Q ss_pred HHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12682 67 VVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKI 100 (755)
Q Consensus 67 vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~L 100 (755)
+-+.|+-.|++-|.+|.+++...+++|.++|+.|
T Consensus 66 ~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 66 FRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778888888888888888999999999876
No 113
>PHA00097 K protein K
Probab=20.41 E-value=49 Score=25.32 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC
Q psy12682 76 EAEKNQLIVQGADNKRQLKEIEDKILQILSSSE 108 (755)
Q Consensus 76 e~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~ 108 (755)
|-.|.-|+.++.+.+-+|+++|.-+|.-|+-|.
T Consensus 18 elnrsgllveneeiqs~lk~le~lll~~lsps~ 50 (56)
T PHA00097 18 ELNRSGLLVENEEIQSQLKKLEKLLLCNLSPSS 50 (56)
T ss_pred hhccccceeccHHHHHHHHHHHHHHhhcCCCCc
Confidence 445677888888999999999999999988664
No 114
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=20.23 E-value=2.8e+02 Score=29.15 Aligned_cols=49 Identities=6% Similarity=0.123 Sum_probs=31.2
Q ss_pred CeeeeeCCCceEEEEeCCCC----CCCChhhhhceEEEEeEeChhhHHHHHHH
Q psy12682 17 DTVIEYNDNFKFYITTKLRN----PHYLPEIAVKVTLLNFMITPVGLADQLLG 65 (755)
Q Consensus 17 d~~id~~p~FrL~L~Tk~~n----p~~~pei~~~vtvINFtvT~~gLe~qlL~ 65 (755)
+..+..||+||++.|+.-.. -..++.+..|+..+.+..-...-|.+++.
T Consensus 143 ~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~ 195 (262)
T TIGR02640 143 SRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILR 195 (262)
T ss_pred CceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHH
Confidence 35678999999999884321 12256677787777776654444444443
No 115
>KOG3091|consensus
Probab=20.13 E-value=5.4e+02 Score=29.67 Aligned_cols=143 Identities=8% Similarity=0.022 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHH
Q psy12682 55 TPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEK 134 (755)
Q Consensus 55 T~~gLe~qlL~~vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~k 134 (755)
+++.-..+.-=..+..+--+|.+...+-...++++|.++.+|+.+||+++ -.++-++...-.|...
T Consensus 347 ~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~--------------ikqeilr~~G~~L~~~ 412 (508)
T KOG3091|consen 347 DQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVM--------------IKQEILRKRGYALTPD 412 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhccCCcCCcc
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHhHHHHHHHHhhcCCCcccccHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q psy12682 135 QAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYS 214 (755)
Q Consensus 135 l~e~~~~~~~i~~~r~~Y~pvA~~~s~lyf~l~~L~~i~~mYqfSL~~f~~lf~~~i~~~~~~~~~~~r~~~L~~~~t~~ 214 (755)
=++...-...|....+.--.+-.|.+.||..+..-. --.++...+..-++.-++.-+.-....+++..|++-+...
T Consensus 413 EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~----~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d 488 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQLNAPNQLKARLDELYEILRMQN----SQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGD 488 (508)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhc----chhccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred H
Q psy12682 215 L 215 (755)
Q Consensus 215 v 215 (755)
.
T Consensus 489 ~ 489 (508)
T KOG3091|consen 489 Q 489 (508)
T ss_pred H
No 116
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.01 E-value=5.7e+02 Score=21.97 Aligned_cols=77 Identities=12% Similarity=0.195 Sum_probs=44.4
Q ss_pred HHhhhcccHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q psy12682 67 VVAKDRPDLE---AEKNQLIVQGADNKRQLKEIEDKILQILS-SSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTE 142 (755)
Q Consensus 67 vv~~E~PeLe---~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls-~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~ 142 (755)
++..-.|.++ .+-.++.........++..+-.+|=+... +...+.++.+.-...|.+.|+.-..+.+++...+.-.
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556665 44455566666666666666666433333 1222244444477777787777777777666655443
Q ss_pred H
Q psy12682 143 K 143 (755)
Q Consensus 143 ~ 143 (755)
.
T Consensus 88 ~ 88 (92)
T PF14712_consen 88 D 88 (92)
T ss_pred H
Confidence 3
Done!