Query psy12682
Match_columns 755
No_of_seqs 213 out of 1165
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:56:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 2E-170 7E-175 1644.2 61.8 725 1-748 2250-3143(3245)
2 4akg_A Glutathione S-transfera 100.0 3E-119 9E-124 1166.7 52.7 529 1-600 2070-2619(2695)
3 3vkg_A Dynein heavy chain, cyt 97.6 0.0053 1.8E-07 82.2 25.9 116 373-501 2182-2313(3245)
4 4akg_A Glutathione S-transfera 90.3 1.3 4.4E-05 59.3 13.0 116 376-494 645-781 (2695)
5 3u61_B DNA polymerase accessor 82.8 3.9 0.00013 42.5 9.4 108 379-494 50-166 (324)
6 3pfi_A Holliday junction ATP-d 82.8 9.2 0.00031 39.8 12.4 115 376-494 55-185 (338)
7 1a5t_A Delta prime, HOLB; zinc 66.1 42 0.0014 35.0 12.1 112 378-494 26-168 (334)
8 1hqc_A RUVB; extended AAA-ATPa 65.8 14 0.00049 37.9 8.3 116 376-494 38-169 (324)
9 2qz4_A Paraplegin; AAA+, SPG7, 65.4 39 0.0013 33.2 11.2 115 376-493 39-177 (262)
10 2chg_A Replication factor C sm 59.5 55 0.0019 30.6 10.7 112 378-494 40-162 (226)
11 3h4m_A Proteasome-activating n 55.7 69 0.0024 32.0 11.2 117 375-494 50-189 (285)
12 1njg_A DNA polymerase III subu 54.3 76 0.0026 30.0 10.8 112 378-494 47-186 (250)
13 1sxj_B Activator 1 37 kDa subu 53.9 29 0.001 35.3 8.1 111 379-494 45-167 (323)
14 3vfd_A Spastin; ATPase, microt 52.3 1E+02 0.0034 32.7 12.3 115 375-493 147-282 (389)
15 2bjv_A PSP operon transcriptio 51.6 1E+02 0.0035 30.4 11.6 110 376-485 29-169 (265)
16 2chq_A Replication factor C sm 49.3 34 0.0012 34.7 7.7 113 378-494 40-162 (319)
17 3pvs_A Replication-associated 45.6 92 0.0031 34.0 10.8 118 377-504 51-178 (447)
18 1jbk_A CLPB protein; beta barr 43.7 92 0.0032 28.2 9.2 112 376-494 43-186 (195)
19 1jr3_A DNA polymerase III subu 40.4 1.2E+02 0.0042 31.2 10.5 112 378-494 40-179 (373)
20 1l8d_A DNA double-strand break 40.2 1.7E+02 0.0057 25.1 9.6 68 73-141 13-86 (112)
21 3t97_B Nuclear pore complex pr 39.2 53 0.0018 25.9 5.2 41 66-106 13-53 (65)
22 1iqp_A RFCS; clamp loader, ext 38.4 49 0.0017 33.6 6.8 112 378-494 48-170 (327)
23 4fcw_A Chaperone protein CLPB; 37.5 1E+02 0.0035 31.0 9.0 99 375-473 46-169 (311)
24 3bcv_A Putative glycosyltransf 35.2 1.7E+02 0.0057 27.9 9.8 70 379-455 37-111 (240)
25 3oja_A Leucine-rich immune mol 33.4 2.8E+02 0.0097 30.1 12.5 62 72-133 362-424 (487)
26 2qp9_X Vacuolar protein sortin 33.2 2.2E+02 0.0074 29.7 11.0 114 375-493 83-217 (355)
27 3vmx_A Voltage-gated hydrogen 32.7 25 0.00085 25.9 2.2 16 624-639 27-42 (48)
28 3m6a_A ATP-dependent protease 31.9 97 0.0033 34.7 8.3 116 376-494 108-254 (543)
29 1ojl_A Transcriptional regulat 31.7 4.2E+02 0.014 26.8 13.6 97 376-474 25-147 (304)
30 2x5n_A SPRPN10, 26S proteasome 31.1 34 0.0012 32.8 3.8 49 379-430 110-161 (192)
31 2gno_A DNA polymerase III, gam 29.9 2.8E+02 0.0096 28.3 10.9 109 379-494 21-140 (305)
32 3t15_A Ribulose bisphosphate c 29.5 3.1E+02 0.011 27.5 11.2 102 379-483 39-174 (293)
33 3a2a_A Voltage-gated hydrogen 29.0 27 0.00091 26.3 1.9 16 624-639 34-49 (58)
34 3teq_A Stromal interaction mol 25.2 3.1E+02 0.011 23.4 8.2 84 62-147 6-92 (101)
35 3b9p_A CG5977-PA, isoform A; A 25.2 5E+02 0.017 25.6 12.0 116 375-493 53-189 (297)
36 3qne_A Seryl-tRNA synthetase, 25.1 2.7E+02 0.0093 30.7 10.0 30 74-103 37-66 (485)
37 1ik9_A DNA repair protein XRCC 25.1 3.5E+02 0.012 26.3 9.9 65 69-146 145-210 (213)
38 3pxi_A Negative regulator of g 24.9 2.2E+02 0.0076 33.1 10.1 117 378-494 523-663 (758)
39 3ibp_A Chromosome partition pr 24.5 4E+02 0.014 27.2 10.3 43 73-115 13-64 (302)
40 2p65_A Hypothetical protein PF 24.0 1.5E+02 0.0053 26.6 7.0 112 376-494 43-187 (187)
41 2v1u_A Cell division control p 23.7 5.7E+02 0.02 25.9 12.3 73 422-494 119-202 (387)
42 1qg8_A Protein (spore coat pol 23.4 1.8E+02 0.0062 27.9 7.8 69 379-454 33-114 (255)
43 3n70_A Transport activator; si 23.1 3.3E+02 0.011 23.8 8.9 92 375-473 23-115 (145)
44 1g8p_A Magnesium-chelatase 38 23.0 4.3E+02 0.015 26.7 11.0 66 430-495 144-220 (350)
45 2dq0_A Seryl-tRNA synthetase; 22.8 3E+02 0.01 30.1 9.9 63 74-147 35-97 (455)
46 3htk_C E3 SUMO-protein ligase 22.6 3.5E+02 0.012 27.3 9.4 68 89-159 34-101 (267)
47 2d7i_A Polypeptide N-acetylgal 22.2 1.9E+02 0.0065 32.4 8.5 70 379-454 147-222 (570)
48 3j0f_I E2 envelope glycoprotei 21.9 47 0.0016 35.4 3.0 49 13-61 276-328 (423)
49 1sxj_C Activator 1 40 kDa subu 21.7 3.1E+02 0.011 28.0 9.5 111 379-494 49-170 (340)
50 2xfc_B E2 envelope glycoprotei 21.5 39 0.0013 36.0 2.2 49 12-60 275-327 (423)
51 4b4t_W RPN10, 26S proteasome r 21.1 47 0.0016 33.9 2.7 38 377-417 109-149 (268)
52 1sxj_E Activator 1 40 kDa subu 20.7 5.1E+02 0.018 26.2 11.0 59 431-494 135-194 (354)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=2.1e-170 Score=1644.23 Aligned_cols=725 Identities=26% Similarity=0.467 Sum_probs=593.6
Q ss_pred CCceEeeCCeEEEEeCCeeeeeCCCceEEEEeCCCCCCCChhhhhceEEEEeEeChhhHHHHHHHHHHhhhcccHHHHHH
Q psy12682 1 MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKN 80 (755)
Q Consensus 1 ~k~~~~~gg~~~I~igd~~id~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~~r~ 80 (755)
.|+++|+||+.+|+|||++|||||+|||||+||++||||+||+++|||+||||||++|||+|||+.||++|+||||++|+
T Consensus 2250 ~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~~GLedQLL~~vv~~ErPeLE~~r~ 2329 (3245)
T 3vkg_A 2250 NKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRS 2329 (3245)
T ss_dssp ------------------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHh
Q psy12682 81 QLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHST 160 (755)
Q Consensus 81 ~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~s 160 (755)
+|+++++++|++|++|||+||+.|++|+||||||++||++|+++|.+|.+|++|++++++|+++|+++|+.|||||.|||
T Consensus 2330 ~Li~~~~~~k~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK~~s~eI~~kl~~a~~te~~I~~~R~~YrpvA~r~s 2409 (3245)
T 3vkg_A 2330 DLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCS 2409 (3245)
T ss_dssp HHHHTTHHHHHHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccccHHHHHHHHHHHhccCCCC---CCHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHH-
Q psy12682 161 VLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKA---DNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILA- 236 (755)
Q Consensus 161 ~lyf~l~~L~~i~~mYqfSL~~f~~lf~~~i~~~~~~---~~~~~r~~~L~~~~t~~vy~~vsrsLf~~~kllf~fll~- 236 (755)
.|||++.+|+.|| ||||||+||+++|..+|.+++++ +++++|+++|++++|+.+|.+||||||++||++|+|+||
T Consensus 2410 ~LyF~i~dL~~i~-mYQfSL~~F~~lF~~si~~s~~~~~~~~~~~Rl~~l~~~lt~~vy~~v~RgLFekdKLlFs~~l~~ 2488 (3245)
T 3vkg_A 2410 RVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTI 2488 (3245)
T ss_dssp HHHHHHTGGGGST-TCCCCHHHHHHHHHHHHSSCGGGSSCCCHHHHHHHHHHHHHHHHHHHHTTTSCGGGTTHHHHHHHH
T ss_pred HHHHHHHHHhcCC-eeeCCHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999999999 99999999999999999988765 789999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHhhcCCCCCCCCC--CCCC-CCCHHhHHHHHhhh-cCcchhchhHHHhhCHHhHHHhhcCCCC
Q psy12682 237 VNLRFKAETISMENWMFLLTGGVGLDNPHK--NPTT-WMVTQSWDELCRLD-ELQEFKGIRDHFTAKHQEWKQIYDAQQP 312 (755)
Q Consensus 237 ~~i~~~~g~i~~~e~~~ll~g~~~~~~~~~--~p~~-wl~~~~w~~i~~L~-~l~~f~~l~~~i~~~~~~W~~~~~~~~p 312 (755)
+.++...|.++++||++|++|+...+...+ +|.+ |++++.|.+|+.|+ .+|.|+++.+++..+.++|+.|+++..|
T Consensus 2489 ~~i~~~~~~i~~~E~~flL~g~~~~~~~~~~~~~~~~wl~~~~w~~i~~L~~~l~~F~~l~~~~~~~~~~W~~~~~s~~p 2568 (3245)
T 3vkg_A 2489 ISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQV 2568 (3245)
T ss_dssp HHTTTSTTCCCHHHHHHHHHTTTTGGGCCCCCGGGTTTCCHHHHHHHHHHHHHCGGGTTHHHHHHHTHHHHHHHTCSSCS
T ss_pred HHHHhccCCCCHHHHHHHhcCCccccccccccCCccccCCHHHHHHHHHHHhhChhhhhHHHHHHhCHHHHHHHhcccCc
Confidence 477777899999999999999877654332 4444 99999999999998 8999999999999999999999999999
Q ss_pred CCCCCCCchhhh-----------hhHHHHHHHHHhhccccchHHHHHHHHHHhCCCccCCCccchhhhhc-cCCCCccEE
Q psy12682 313 QDAPLPQPWQDK-----------LDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYN-DSVCTVPLI 380 (755)
Q Consensus 313 ~~~~lP~~~~~~-----------l~~fqklllir~lRpdrl~~a~~~~v~~~lG~~f~~~~~~~l~~~~~-~s~~~tPii 380 (755)
|....|++|... +++|||||++||+||||+..|+++||.+.||.+|+++|++||+.+|+ +|+++||+|
T Consensus 2569 e~~~pp~~w~~~~~~~~~~~~~~l~~fqkLlllr~lRpDr~~~a~~~fV~~~lG~~fv~~~~~dl~~~~~~es~~~tPli 2648 (3245)
T 3vkg_A 2569 GEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKSSSPLL 2648 (3245)
T ss_dssp SCCCCCTTHHHHHHHHSSCCCHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHSCTTTTCC--CCHHHHHHHSSCTTSCEE
T ss_pred ccccCccccccccccccccccchhhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCccCCCCCCCHHHHHhccCCCCccEE
Confidence 986555889755 89999999999999999999999999999999999999999999999 999999999
Q ss_pred EecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCch-HHHHHHHHHHHhcCCeEEecccccccchhHHHHHHHhhhCCC
Q psy12682 381 FLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQG-PIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPE 459 (755)
Q Consensus 381 ~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~-~~A~~~I~~a~~~G~WVlLqN~HL~~swl~~Le~ile~l~~~ 459 (755)
||+|||+||+..|.+||+++|. +++.|||||||| +.|+++|+.|+++|+||+||||||+++||++||++++.+
T Consensus 2649 filSpG~DP~~~l~~lA~~~~~---~~~~iSLGqgQg~~~A~~~i~~a~~~G~WV~LqNcHL~~sWl~~LEk~le~~--- 2722 (3245)
T 3vkg_A 2649 LCSVPGYDASSKVDDLALQLHK---QYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSL--- 2722 (3245)
T ss_dssp CEECTTCCCHHHHHHHHHHHTC---CCCCCBTTSHHHHHHHHHHHHHHHHHTCEEECBCGGGCTTTHHHHHHHHHTC---
T ss_pred EEeCCCCChHHHHHHHHHHhCC---CcEEEECCCCccHHHHHHHHHHHHHcCCEEEEechhhhHhHHHHHHHHHHcc---
Confidence 9999999999999999999974 899999999999 599999999999999999999999999999999999976
Q ss_pred CCCCCceEEEEeCCCCCCcHHHHhhceEeccCCccchHHHHHHHhcCCCCCChhhhhhcCChhhHHHHHHHHHHHHHhHH
Q psy12682 460 TTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALIL 539 (755)
Q Consensus 460 ~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~glk~nl~~~~~~~~~~~~~~~~~~~~~~~~k~l~f~L~~fHavl~ 539 (755)
+.|++|||||||+|++.||++|||+|+|||+|||+|+|+||+|+|.+ ++ ++.+ |.++..|++++|+||||||||+
T Consensus 2723 ~~h~~FRLwLTsep~~~fP~~iLq~siKit~EpP~GlkaNl~rs~~~--~~-~~~~--~~~~~~~~~llf~L~fFHAvvq 2797 (3245)
T 3vkg_A 2723 SPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIG--IP-ATRM--DKQPAERSRIYFLLAWFHAIIQ 2797 (3245)
T ss_dssp CCCTTCEEECCEESCTTSCHHHHHTSEECCBCCCSSHHHHHHHHHTT--SC-HHHH--TSSSTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEEEecCCCCCCHHHHHhhhHheeCCChhHHHHHHHHHHh--CC-HHHh--ccCcHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999986 43 3444 4567789999999999999999
Q ss_pred HHhhhCCCccccccccChhhHHHHHHHHHHHHhhc---------cCC--------------C------------------
Q psy12682 540 ERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQY---------SEA--------------G------------------ 578 (755)
Q Consensus 540 eR~~fgplGwn~~Y~Fn~sDl~~s~~~l~~~l~~~---------~~i--------------G------------------ 578 (755)
|||||||+|||++|+||++||++|+++|++|++++ +.| |
T Consensus 2798 ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~ 2877 (3245)
T 3vkg_A 2798 ERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2877 (3245)
T ss_dssp HGGGGTTTSCSSCCCCCHHHHHHHHHHHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHH
T ss_pred HHHHhCccccCcccccchHHHHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875 233 2
Q ss_pred --------------------------------------------------------------------------CCCCC-
Q psy12682 579 --------------------------------------------------------------------------GSAGD- 583 (755)
Q Consensus 579 --------------------------------------------------------------------------~~~~~- 583 (755)
.+|++
T Consensus 2878 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~ 2957 (3245)
T 3vkg_A 2878 LFTPSAFNPDFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGED 2957 (3245)
T ss_dssp HSSGGGGSSSCEEEGGGTEECCCCSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HcCHhhcCCcccCCCCCCCCCCCCCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 11110
Q ss_pred ----------------CCChHHHHHHHHHHHHHhCCCCCChHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHhhh---
Q psy12682 584 ----------------AKSTEDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNS--- 644 (755)
Q Consensus 584 ----------------~~~~~~~v~~~~~~il~~lP~~~~~~~~~~~~~~~~~~~l~~vl~qE~~r~n~ll~~i~~s--- 644 (755)
+.++++.|.+++++++++||+.||.. .+++..+.+||++||.|||+|||+||+.||+|
T Consensus 2958 ~~~s~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~lP~~~~~~---~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~ 3034 (3245)
T 3vkg_A 2958 DQVSGSSKKESSSSSSEDKGKAKLRATITEWTKLLPKPLKQL---KRTTQNIKDPLFRCFEREISTGGKLVKKITNDLAN 3034 (3245)
T ss_dssp ------------CHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCCcHHHHHHHHHHHHHhCccccchh---hccccccCChHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11244568899999999999999842 34555677999999999999999999999999
Q ss_pred -------hccccHhHHHHHHhhhcCCCCcccccccCCCCCChHHHHHHHHHHHHHHhHhHhhhhccC--CCCccccceec
Q psy12682 645 -------LIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQS--GSPEFDVKTHQ 715 (755)
Q Consensus 645 -------~~~ms~~le~~~~~l~~~~VP~~W~~~~y~s~k~L~sw~~dl~~R~~~~~~W~~~~~~~~--g~P~~~~~~wl 715 (755)
+++||++||++++||++|+||+.|.+.+|||+|||++|+.||++|++|+++| +++ |.|.+ |||
T Consensus 3035 L~~aikG~i~mS~~le~l~~sl~~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W-----~~~~~~~p~~---~WL 3106 (3245)
T 3vkg_A 3035 LLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEI-----SESSDYSSIQ---VWL 3106 (3245)
T ss_dssp HC-----------------------------CCSCCCSSCCHHHHHHHHHHHHHHHHHH-----HHC----------CCG
T ss_pred HHHHhCCCCcCCHHHHHHHHHHHcCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHH-----HhcCCCCCce---Eec
Confidence 8899999999999999999999999999999999999999999999999999 876 69999 999
Q ss_pred CcccchhHHHHHHHHhhhhh---ccccceE-Eeeece
Q psy12682 716 SGQWFTKHIEVVITDPMSTH---LISRLCI-QRDIGY 748 (755)
Q Consensus 716 ~gff~Pq~flta~~Q~~ar~---~ld~~~l-~~~~~~ 748 (755)
||||||||||||++|++||+ |+|++++ .++|+.
T Consensus 3107 sgff~Pq~FLTA~~Q~~ARk~~~plD~l~l~~~~V~~ 3143 (3245)
T 3vkg_A 3107 GGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGK 3143 (3245)
T ss_dssp GGSSCHHHHHHHHHHHHHHHTC------CCCBC----
T ss_pred CCCcchHHHHHHHHHHHHHHhCCCCccceeeeEEEec
Confidence 99999999999999999994 9999999 888864
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=2.6e-119 Score=1166.66 Aligned_cols=529 Identities=18% Similarity=0.321 Sum_probs=467.7
Q ss_pred CCceEeeCCeEEEEeCCeeeeeCCCceEEEEeCCCCCCCChhhhhceEEEEeEeChhhHHHHHHHHHHhhhcccHHHHHH
Q psy12682 1 MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKN 80 (755)
Q Consensus 1 ~k~~~~~gg~~~I~igd~~id~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~~r~ 80 (755)
.|+++|+||+.+|+|||++|||||+||||||||++||||+||+++|||+||||||++|||+|||+.||++|+||||+||+
T Consensus 2070 ~k~~~k~gg~~~i~lGdk~idy~~~FrlyltTkl~np~y~Pei~~~vt~iNFtvT~~GLedQLL~~vv~~ErPdLE~~r~ 2149 (2695)
T 4akg_A 2070 SREFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDITLTEENAEMQRKRE 2149 (2695)
T ss_dssp TTCCEECSSCEEEECSSSEEECCSSCEEEEEECCTTCCCCHHHHHHEEEEECCCCSHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hhHhhhcCCeEEEEECCeeEecCCCceEEEeeCCCCCCCCHHHHhheeEEEEEEcHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHh
Q psy12682 81 QLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHST 160 (755)
Q Consensus 81 ~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~s 160 (755)
+|+++++++|++|++|||+||+.|++|+||||||++||++|+++|.+|.||++|++++++|+++|+++|+.|||+|.|||
T Consensus 2150 ~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~t~~~I~~~R~~YrpvA~r~s 2229 (2695)
T 4akg_A 2150 DLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSV 2229 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccccHHHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHH
Q psy12682 161 VLFFCIANLGNIDPMYQYSLVWFDNLYRMAI-DNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNL 239 (755)
Q Consensus 161 ~lyf~l~~L~~i~~mYqfSL~~f~~lf~~~i-~~~~~~~~~~~r~~~L~~~~t~~vy~~vsrsLf~~~kllf~fll~~~i 239 (755)
.|||++.+|+.|||||||||.||+++|..+| .++++++++++|+++|++++|+.+|.+||||||++||++|+|+||++|
T Consensus 2230 ~LyF~i~dL~~i~~mYq~SL~~F~~lF~~~i~~~s~~~~~~~~R~~~l~~~~t~~vy~~v~r~Lfe~dkl~fs~~l~~~i 2309 (2695)
T 4akg_A 2230 KIFSMLEKFGQFHWFYGISIGQFLSCFKRVFIKKSRETRAARTRVDEILWLLYQEVYCQFSTALDKKFKMIMAMTMFCLY 2309 (2695)
T ss_dssp HHHHHHHHHHHHCTTCCCCHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCchhhCCHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 899988899999999999999999999999999999999999999999
Q ss_pred HhhcCCCCHHH-HHHHhhcCCCCCCCCCCCCC-CCCHHhHHHHHhhhcCcchhchhHHHhhCHHhHHHhhcCCCCCCCCC
Q psy12682 240 RFKAETISMEN-WMFLLTGGVGLDNPHKNPTT-WMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPL 317 (755)
Q Consensus 240 ~~~~g~i~~~e-~~~ll~g~~~~~~~~~~p~~-wl~~~~w~~i~~L~~l~~f~~l~~~i~~~~~~W~~~~~~~~p~~~~l 317 (755)
+...|.+..+| +.+|++|. ..+ +|.+ |+...
T Consensus 2310 ~~~~~~~~~~e~~~~~l~~~-~~~----~~~~~~~~~~------------------------------------------ 2342 (2695)
T 4akg_A 2310 KFDIESEQYKEAVLTMIGVL-SES----SDGVPKLTVD------------------------------------------ 2342 (2695)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-SSS----CCCCCCCCTT------------------------------------------
T ss_pred HhhcCCCchHHHHHHHHhcc-ccC----CCCccccccc------------------------------------------
Confidence 99888887766 77787764 111 1111 22111
Q ss_pred CCchhhhhhHHHHHHHHHhhccccchHHHHHHHHHHhCCCccCCCccchhhhhccCCCCccEEEecCCCCChHHHHHHHH
Q psy12682 318 PQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFA 397 (755)
Q Consensus 318 P~~~~~~l~~fqklllir~lRpdrl~~a~~~~v~~~lG~~f~~~~~~~l~~~~~~s~~~tPii~ils~g~DP~~~i~~lA 397 (755)
....|+++ ++++|||++..++ +|+...++ ||++|++.. .++++.+|+||++|||+||+..|.+||
T Consensus 2343 ------~~~~~~~l--~~~~~~~~~~~~~-~~~~~~~~-----~~~~~l~~~-~~s~~~~PlifilspG~DP~~~l~~la 2407 (2695)
T 4akg_A 2343 ------TNNDLRYL--WDYVTTKSYISAL-NWFKNEFF-----VDEWNIADV-VANSDNNYFTMASERDVDGTFKLIELA 2407 (2695)
T ss_dssp ------TCSHHHHH--HHHHHTTCHHHHH-HHHHHTTC-----CCCCCHHHH-HHHCCCSEEEEEECTTCCTHHHHHHHH
T ss_pred ------chHHHHHH--HHHhcccHHHHHH-HHHHhccC-----CCcccHHHH-HhcCCCCeEEeeCCCCCCchHHHHHHH
Confidence 11245554 7888888876654 56665443 577999874 467889999999999999999999999
Q ss_pred HhcCCCCCCceEEecCCCchH-HHHHHHHHHHhcCCeEEecccccccchhHHH-HHHHhhhCCCCCCCCceEEEEeC-CC
Q psy12682 398 DDMGFGGSKFSALSLGQGQGP-IAVKLINDGLKKGDWVLLQNCHLAKSWMPVL-EKMCESLSPETTHPDFRLWLTSY-PS 474 (755)
Q Consensus 398 ~~~~~~~~~l~~iSLG~gq~~-~A~~~I~~a~~~G~WVlLqN~HL~~swl~~L-e~ile~l~~~~~h~~FRLwLts~-p~ 474 (755)
+++| ++++.||||||||+ .|+++|+.|+++|+||+||||||+++||++| |++++.+...++|++|||||||+ |+
T Consensus 2408 ~~~~---~~~~~iSlGqgq~~~~A~~~i~~a~~~G~Wv~LqN~HL~~swl~~Llek~~e~~~~~~~h~~FRLwlts~~~~ 2484 (2695)
T 4akg_A 2408 KASK---ESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTG 2484 (2695)
T ss_dssp HTTT---CCCCEEECCSHHHHHHHHHHHHHHHHHTCCEEEETGGGGHHHHHHTHHHHHHHCSSTTTSCSCCEEEECCSSS
T ss_pred HHhC---CCcEEEecCCCccHHHHHHHHHHHHHcCCeEEeecccccHHHHHHHHHHHHhcccccCCCCCceEEEeccCCc
Confidence 9987 48999999999995 9999999999999999999999999999999 99999876678999999999999 99
Q ss_pred CCCcHHHHhhceEeccCCccchHHHHHHHhcCCCCCChhhhhhcCChhhHHHHHHHHHHHHHhHHHHhhhCCCccccccc
Q psy12682 475 NLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQ 554 (755)
Q Consensus 475 ~~fP~~lLq~s~Kv~~Epp~glk~nl~~~~~~~~~~~~~~~~~~~~~~~~k~l~f~L~~fHavl~eR~~fgplGwn~~Y~ 554 (755)
+.||++|||+|+|||+|||+|+|+||+|+|.+ +.++.|.++.+|++++|+||||||||+|||||||+|||++||
T Consensus 2485 ~~fP~~iLq~s~K~t~EpP~Glkanl~r~~~~------~~~~~~~~~~~~~~llf~L~~fHavv~ERrkfgplGWn~~Ye 2558 (2695)
T 4akg_A 2485 DKLPAPLLQRTDRFVYEDIPGILDTVKDLWGS------QFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYY 2558 (2695)
T ss_dssp CCCCHHHHHHSEEEEECCCCCHHHHHHHHHHH------GGGGCCSSCHHHHHHHHHHHHHHHHHHHHHHSTTTTSSSCCC
T ss_pred CcCCHHHHhccceeeecCChhHHHHHHHHhhh------HHHhhccccHHHHHHHHHHHHHHHHHHHHHHhCccccCcCCC
Confidence 99999999999999999999999999999953 566778888999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHhhc--cCC---------C--CCCCCCCCh-H-HHHHHHHHHHHH
Q psy12682 555 FNETDLKISLVQLKMFLDQY--SEA---------G--GSAGDAKST-E-DLIIRVTSDILQ 600 (755)
Q Consensus 555 Fn~sDl~~s~~~l~~~l~~~--~~i---------G--~~~~~~~~~-~-~~v~~~~~~il~ 600 (755)
||++||++|+++|++|++++ +.| | .|||.-.++ | ..+..++++++.
T Consensus 2559 Fn~sDl~~s~~~l~~~l~~~~~~~ipw~~l~yl~ge~~YGGrvtd~~Drr~l~t~l~~~~~ 2619 (2695)
T 4akg_A 2559 FNDCDFQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFC 2619 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCSGGGHHHHHHHHHTTSTTTCCSHHHHHHHHHHHHHHTC
T ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999987 444 3 677774432 2 344555566554
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.59 E-value=0.0053 Score=82.19 Aligned_cols=116 Identities=20% Similarity=0.281 Sum_probs=70.3
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHHhcCCeEEecccccccchhHHHHHH
Q psy12682 373 SVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKM 452 (755)
Q Consensus 373 s~~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~~~G~WVlLqN~HL~~swl~~Le~i 452 (755)
.+..-|+++ ||..+..++.+.+-. .+++.++++++. .-.+.|+.|++-|..|+|+|+. ..-|.|+-+
T Consensus 2182 ~~~R~PLlI------DPq~Qa~~WIk~~~~-~~~l~v~~~~d~---~f~~~LE~ai~fG~pvLienvE---~lDP~L~pv 2248 (3245)
T 3vkg_A 2182 RFNRYPLVI------DPSGQAMEFLMNQYA-DKKITKTSFLDS---SFMKNLESALRFGCPLLVQDVE---NIDPVLNPV 2248 (3245)
T ss_dssp SCSSCEEEE------CTTSHHHHHHHHHTG-GGCCCCCCC--------HHHHHHHHHHTCCEECCCCC------------
T ss_pred cCCCceEEE------ChHHHHHHHHHHHhc-cCCceEeecCch---hHHHHHHHHHHcCCeEEEcccc---ccchhHHHH
Confidence 345678643 999888888876532 246888888754 4578899999999999999993 333444444
Q ss_pred Hhh------------hC--CCCCCCCceEEEEe-CCCCCCcHHHHhhceEeccCC-ccchHHHHH
Q psy12682 453 CES------------LS--PETTHPDFRLWLTS-YPSNLFPVSVLQNGVKITNEP-PKGLRANIN 501 (755)
Q Consensus 453 le~------------l~--~~~~h~~FRLwLts-~p~~~fP~~lLq~s~Kv~~Ep-p~glk~nl~ 501 (755)
+.. +. .-..||+||||||+ .|+|.+|..+--+..-|-+-- +.||-.-++
T Consensus 2249 L~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~~GLedQLL 2313 (3245)
T 3vkg_A 2249 LNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCL 2313 (3245)
T ss_dssp -------------------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCHHHHHHHHH
T ss_pred HHHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecHHHHHHHHH
Confidence 332 11 12469999999999 689999999887776665543 566655544
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.28 E-value=1.3 Score=59.30 Aligned_cols=116 Identities=12% Similarity=0.217 Sum_probs=90.2
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCch-HHHHHHHHHHHhcCCeEEecccccccc-hhHHHHHHH
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQG-PIAVKLINDGLKKGDWVLLQNCHLAKS-WMPVLEKMC 453 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~-~~A~~~I~~a~~~G~WVlLqN~HL~~s-wl~~Le~il 453 (755)
.-|....-++|+=-|..+..+|+..|. .+..+....+-. ....+.+..|++.|.|+++..++.++. -+..|...+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~---~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l 721 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGR---VVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANI 721 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTC---CCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCC---cEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHH
Confidence 457788888999999999999999985 888998888855 355788889999999999999987763 444443222
Q ss_pred ----hhhC-----------CCCCCCCceEEEEeCC----CCCCcHHHHhhceEeccCCcc
Q psy12682 454 ----ESLS-----------PETTHPDFRLWLTSYP----SNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 454 ----e~l~-----------~~~~h~~FRLwLts~p----~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
+.+. .-..|++|++|+|+.| ...+|.++......+....|.
T Consensus 722 ~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd 781 (2695)
T 4akg_A 722 QQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQ 781 (2695)
T ss_dssp HHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCC
T ss_pred HHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCC
Confidence 2221 1146999999999985 446999999999999988774
No 5
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.80 E-value=3.9 Score=42.51 Aligned_cols=108 Identities=11% Similarity=0.097 Sum_probs=77.5
Q ss_pred EEEecC-CCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHHh------cCCeEEeccccccc--chhHHH
Q psy12682 379 LIFLLT-PGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLK------KGDWVLLQNCHLAK--SWMPVL 449 (755)
Q Consensus 379 ii~ils-~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~~------~G~WVlLqN~HL~~--swl~~L 449 (755)
++++.. ||+==|..+..+|++.+. .+..++-...........+..... .+.-|+|.++|... .....|
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L 126 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNA---DMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHL 126 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTE---EEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHH
Confidence 444444 899889999999998863 566666443333445555666554 45688999999764 333445
Q ss_pred HHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 450 EKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 450 e~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
-+.++.. .++.++.+|+.....++..+..+|..+.+.+|+
T Consensus 127 ~~~le~~-----~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~ 166 (324)
T 3u61_B 127 RSFMEAY-----SSNCSIIITANNIDGIIKPLQSRCRVITFGQPT 166 (324)
T ss_dssp HHHHHHH-----GGGCEEEEEESSGGGSCTTHHHHSEEEECCCCC
T ss_pred HHHHHhC-----CCCcEEEEEeCCccccCHHHHhhCcEEEeCCCC
Confidence 5556543 367899999988889999999999999998886
No 6
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.77 E-value=9.2 Score=39.84 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=79.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHH-HHHHHHHHhcCCeEEecccccc-cchhHHHHHHH
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIA-VKLINDGLKKGDWVLLQNCHLA-KSWMPVLEKMC 453 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A-~~~I~~a~~~G~WVlLqN~HL~-~swl~~Le~il 453 (755)
..++++.-+||+==+.....+|+..+. .+..++.+....... ...+. ....|+.|+|..+|.. +.+...|-+.+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~lDEi~~l~~~~~~~Ll~~l 130 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSA---NIKTTAAPMIEKSGDLAAILT-NLSEGDILFIDEIHRLSPAIEEVLYPAM 130 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTC---CEEEEEGGGCCSHHHHHHHHH-TCCTTCEEEEETGGGCCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC---CeEEecchhccchhHHHHHHH-hccCCCEEEEechhhcCHHHHHHHHHHH
Confidence 347888889999888888999988764 566666544443322 23333 3567899999999955 45555565555
Q ss_pred hhhCC----------C---CCCCCceEEEEeCCCCCCcHHHHhhc-eEeccCCcc
Q psy12682 454 ESLSP----------E---TTHPDFRLWLTSYPSNLFPVSVLQNG-VKITNEPPK 494 (755)
Q Consensus 454 e~l~~----------~---~~h~~FRLwLts~p~~~fP~~lLq~s-~Kv~~Epp~ 494 (755)
+.-.. . ...|.|+++.++.....++..++.++ ..+.+.+|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 131 EDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYK 185 (338)
T ss_dssp HTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred HhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcC
Confidence 54210 0 11346999999998888999999998 788888774
No 7
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=66.10 E-value=42 Score=34.97 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=73.2
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC---------------------CCceEEecC---CCch-HHHHHHHHHHHh---
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG---------------------SKFSALSLG---QGQG-PIAVKLINDGLK--- 429 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~---------------------~~l~~iSLG---~gq~-~~A~~~I~~a~~--- 429 (755)
.++|.-++|.-=+.....+|+...-.. ..+..+.-. .+-+ ...+.+++.+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~ 105 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHAR 105 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCT
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhccc
Confidence 377777788887888888887754211 123444332 2222 345566666543
Q ss_pred cC--CeEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 430 KG--DWVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 430 ~G--~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
.| .-|++.++|... .-...|-+.+| +..++-.+++++.....++..|.++|..+.+.||+
T Consensus 106 ~~~~kvviIdead~l~~~a~naLLk~lE-----ep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~ 168 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTDAAANALLKTLE-----EPPAETWFFLATREPERLLATLRSRCRLHYLAPPP 168 (334)
T ss_dssp TSSCEEEEESCGGGBCHHHHHHHHHHHT-----SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred cCCcEEEEECchhhcCHHHHHHHHHHhc-----CCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCC
Confidence 23 456779999765 33344555554 34567888888877678999999999999998875
No 8
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=65.78 E-value=14 Score=37.90 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=79.3
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchH-HHHHHHHHHHhcCCeEEecccccccchh-HHHHHHH
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGP-IAVKLINDGLKKGDWVLLQNCHLAKSWM-PVLEKMC 453 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~-~A~~~I~~a~~~G~WVlLqN~HL~~swl-~~Le~il 453 (755)
..|+++.-++|+==+.....+|+..+. .+..++.+..... .....+..+...|+.|+|..+|..+... ..|-+.+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l 114 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGV---NLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAM 114 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTC---CEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC---CEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHH
Confidence 357888889999888888889988764 5656665544332 2334444445678999999999776432 3354555
Q ss_pred hhhC-----CC-----C---CCCCceEEEEeCCCCCCcHHHHhhc-eEeccCCcc
Q psy12682 454 ESLS-----PE-----T---THPDFRLWLTSYPSNLFPVSVLQNG-VKITNEPPK 494 (755)
Q Consensus 454 e~l~-----~~-----~---~h~~FRLwLts~p~~~fP~~lLq~s-~Kv~~Epp~ 494 (755)
+... .. . ..++++++.++.....+...++.++ ..+.+.+|+
T Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 115 EDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp HHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred HhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 5421 00 0 1257999999988888888888888 577777764
No 9
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=65.44 E-value=39 Score=33.23 Aligned_cols=115 Identities=12% Similarity=0.151 Sum_probs=72.1
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCC------Cch-HHHHHHHHHHHhc-CCeEEeccccccc----
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQ------GQG-PIAVKLINDGLKK-GDWVLLQNCHLAK---- 443 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~------gq~-~~A~~~I~~a~~~-G~WVlLqN~HL~~---- 443 (755)
..|+++.-+||+==|.....+|++.+. .+..++... |.. ......++.|... +.-|+|.++|...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~ 115 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQV---PFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRS 115 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC---CEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC--------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC---CEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccc
Confidence 457899999999999999999998874 566665543 222 2345566666544 4678889999651
Q ss_pred ---------chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHh--hc-eEeccCCc
Q psy12682 444 ---------SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQ--NG-VKITNEPP 493 (755)
Q Consensus 444 ---------swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq--~s-~Kv~~Epp 493 (755)
.....|..+++.+.......+++++.|+.....++..+++ +. ..+.+.+|
T Consensus 116 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 116 TTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp -----------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred ccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence 2223455555554332345678899988877777777776 43 45555554
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=59.51 E-value=55 Score=30.60 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=73.2
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCC--CCCceEEecCCCch-HHHHHHHHHHH-------hcCCeEEecccccccc-hh
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFG--GSKFSALSLGQGQG-PIAVKLINDGL-------KKGDWVLLQNCHLAKS-WM 446 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~--~~~l~~iSLG~gq~-~~A~~~I~~a~-------~~G~WVlLqN~HL~~s-wl 446 (755)
++++.-++|+==|..+..+|++.... ...+..+..+...+ ......+.... ..+..|+|.++|.... -.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHH
Confidence 47788888988888888888764110 12344444444333 23344444443 2456788999997654 33
Q ss_pred HHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 447 PVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 447 ~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
..|-++++. .+++.++.+|+.....++..+..++..+.+.||+
T Consensus 120 ~~l~~~l~~-----~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 120 AALRRTMEM-----YSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp HHHHHHHHH-----TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHHHh-----cCCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 345555553 3567899999988788888999998888887765
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=55.66 E-value=69 Score=31.96 Aligned_cols=117 Identities=11% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCC------Cch-HHHHHHHHHHHhcC-CeEEeccccccc---
Q psy12682 375 CTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQ------GQG-PIAVKLINDGLKKG-DWVLLQNCHLAK--- 443 (755)
Q Consensus 375 ~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~------gq~-~~A~~~I~~a~~~G-~WVlLqN~HL~~--- 443 (755)
+..++++.-+||+==|..+..+|...+. .+..++... |.. ......+..+...+ ..|+|.++|...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 126 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNA---TFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR 126 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTC---EEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccC
Confidence 3457999999999999999999998864 555554332 222 23344555555443 588899998642
Q ss_pred ---------chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHh--hc-eEeccCCcc
Q psy12682 444 ---------SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQ--NG-VKITNEPPK 494 (755)
Q Consensus 444 ---------swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq--~s-~Kv~~Epp~ 494 (755)
.....|..+++.+.......+++++.|+.....++..++. +. ..+.+.+|.
T Consensus 127 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~ 189 (285)
T 3h4m_A 127 TDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189 (285)
T ss_dssp SSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCC
T ss_pred ccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCC
Confidence 2233455555554333445789999999888889988887 43 345555553
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=54.27 E-value=76 Score=29.97 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=68.1
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC---------------------CCceEEecCCCch-HHHHHHHHHHH-----hc
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG---------------------SKFSALSLGQGQG-PIAVKLINDGL-----KK 430 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~---------------------~~l~~iSLG~gq~-~~A~~~I~~a~-----~~ 430 (755)
++++.-++|+==|..+..+|+..+... ..+..+.-..... ......++.+. ..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 126 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCC
Confidence 567777788877777888877653200 0111222221122 22334444322 12
Q ss_pred CCeEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 431 GDWVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 431 G~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
+..|+|.++|... .....|-+.++ ..+++.++.+++.....++..+..++..+.+.|++
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~-----~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~ 186 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLE-----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 186 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHH-----SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred ceEEEEECcccccHHHHHHHHHHHh-----cCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCC
Confidence 4688899999643 34444544443 23568899999987778888999998888888764
No 13
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.89 E-value=29 Score=35.27 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=71.7
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCC--CCceEEecCCCch-HHHHHHHHHHH-------h-cCCeEEecccccccc-hh
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGG--SKFSALSLGQGQG-PIAVKLINDGL-------K-KGDWVLLQNCHLAKS-WM 446 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~--~~l~~iSLG~gq~-~~A~~~I~~a~-------~-~G~WVlLqN~HL~~s-wl 446 (755)
++|.-++|+==+..+..+|+...-.. ..+..+.-+...+ ......++... . +..-|+|.++|.... -.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~ 124 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ 124 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH
Confidence 77777788887888888887742100 1222333333222 33445555544 1 145788999997543 23
Q ss_pred HHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 447 PVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 447 ~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
..|.+.++. ..++.++.+++.....++..+..+|..+.+.||+
T Consensus 125 ~~L~~~le~-----~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~ 167 (323)
T 1sxj_B 125 QALRRTMEL-----YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLS 167 (323)
T ss_dssp HTTHHHHHH-----TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHHhc-----cCCCceEEEEeCChhhchhHHHhhceEEeecCCC
Confidence 335555554 3467899999988888999999999999998875
No 14
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=52.30 E-value=1e+02 Score=32.71 Aligned_cols=115 Identities=10% Similarity=0.092 Sum_probs=72.4
Q ss_pred CCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCC------ch-HHHHHHHHHHHhcC-CeEEecccccc----
Q psy12682 375 CTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQG------QG-PIAVKLINDGLKKG-DWVLLQNCHLA---- 442 (755)
Q Consensus 375 ~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~g------q~-~~A~~~I~~a~~~G-~WVlLqN~HL~---- 442 (755)
+..++++.-+||+==+..+..+|.+.+. .+..++.+.- +. ......++.|...+ .-|+|..+|..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~---~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~ 223 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNA---TFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCER 223 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcC---cEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccC
Confidence 3457999999999999999999998864 6666665442 11 23345555555544 68899999854
Q ss_pred ----cchh----HHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhce-EeccCCc
Q psy12682 443 ----KSWM----PVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGV-KITNEPP 493 (755)
Q Consensus 443 ----~swl----~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~-Kv~~Epp 493 (755)
.... ..|-..++... .....+++++.|+.....++..++.++. .+.+.+|
T Consensus 224 ~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p 282 (389)
T 3vfd_A 224 REGEHDASRRLKTEFLIEFDGVQ-SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLP 282 (389)
T ss_dssp -----CTHHHHHHHHHHHHHHHC------CEEEEEEESCGGGCCHHHHTTCCEEEECCCC
T ss_pred CCccchHHHHHHHHHHHHhhccc-ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCc
Confidence 1111 12223333332 1235678999999887789999999885 4555554
No 15
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=51.56 E-value=1e+02 Score=30.36 Aligned_cols=110 Identities=12% Similarity=0.052 Sum_probs=66.8
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHH-----------------HHHhcCCeEEecc
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLIN-----------------DGLKKGDWVLLQN 438 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~-----------------~a~~~G~WVlLqN 438 (755)
..|+++.-+||+==+.....+++..+.....+..|..+.-.....+..+- -....|+.|+|.+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDE 108 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEES
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEec
Confidence 35899999999988887778877654322356677666543333222210 0113578999999
Q ss_pred cccccchh-HHHHHHHhhh--CC----CCCCCCceEEEEeCCCC-------CCcHHHHhhc
Q psy12682 439 CHLAKSWM-PVLEKMCESL--SP----ETTHPDFRLWLTSYPSN-------LFPVSVLQNG 485 (755)
Q Consensus 439 ~HL~~swl-~~Le~ile~l--~~----~~~h~~FRLwLts~p~~-------~fP~~lLq~s 485 (755)
+|..+.-. ..|-++++.- .. ...+.++|+.+|+.+.. .|+..++++.
T Consensus 109 i~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl 169 (265)
T 2bjv_A 109 LATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDAL 169 (265)
T ss_dssp GGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHH
T ss_pred hHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhh
Confidence 99776533 2354555431 00 12346899999997742 3666666664
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=49.32 E-value=34 Score=34.66 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=70.6
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC--CCceEEecCCCch-HHHHHHHHHHH-------hcCCeEEecccccccchhH
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG--SKFSALSLGQGQG-PIAVKLINDGL-------KKGDWVLLQNCHLAKSWMP 447 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~--~~l~~iSLG~gq~-~~A~~~I~~a~-------~~G~WVlLqN~HL~~swl~ 447 (755)
+++|.-+||+==+..+..+|+...-.. ..+..+..+...+ ......+.... ..+..|++.++|....-.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~- 118 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA- 118 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH-
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH-
Confidence 478888888887888888887741100 1233444333222 11223333332 235678999999765421
Q ss_pred HHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 448 VLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 448 ~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
.+.++..+ ++..++.++.+++.....++..+..+|..+.+.||+
T Consensus 119 -~~~L~~~l--e~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 119 -QAALRRTM--EMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp -HHTTGGGT--SSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred -HHHHHHHH--HhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 22222222 245678999999988888999999999999998876
No 17
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=45.58 E-value=92 Score=34.02 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=75.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHH-----hcCCeEEecccccccch-hHHHH
Q psy12682 377 VPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGL-----KKGDWVLLQNCHLAKSW-MPVLE 450 (755)
Q Consensus 377 tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~-----~~G~WVlLqN~HL~~sw-l~~Le 450 (755)
.+++|.-+||+==|.....+|+..+. .+..++............++.+. ..+.-|+|.++|....- ...|-
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~---~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL 127 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANA---DVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFL 127 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC---EEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC---CeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHH
Confidence 46888889999888888999988764 55555543332334455555554 35788999999966531 11222
Q ss_pred HHHhhhCCCCCCCCceEEEEeC--CCCCCcHHHHhhceEeccCCcc--chHHHHHHHh
Q psy12682 451 KMCESLSPETTHPDFRLWLTSY--PSNLFPVSVLQNGVKITNEPPK--GLRANINRSY 504 (755)
Q Consensus 451 ~ile~l~~~~~h~~FRLwLts~--p~~~fP~~lLq~s~Kv~~Epp~--glk~nl~~~~ 504 (755)
+.++. ...+++.++. +...++..|+.+|..+.+.||+ .++.-+.+..
T Consensus 128 ~~le~-------~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l 178 (447)
T 3pvs_A 128 PHIED-------GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAM 178 (447)
T ss_dssp HHHHT-------TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHhc-------CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHH
Confidence 33332 3477777663 3346899999999999998875 2344444443
No 18
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=43.73 E-value=92 Score=28.16 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=68.1
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCC-------CCCCceEEecCC-----C-ch---HHHHHHHHHHHhcC--CeEEec
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGF-------GGSKFSALSLGQ-----G-QG---PIAVKLINDGLKKG--DWVLLQ 437 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~-------~~~~l~~iSLG~-----g-q~---~~A~~~I~~a~~~G--~WVlLq 437 (755)
..++++.-++|+==|..+..+|+.... ....+..++++. . .+ ......++.+.+.+ ..|+|.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 356888888898888888888877410 012444444321 1 11 12334444443333 368999
Q ss_pred cccccc---------chhHHHHHHHhhhCCCCCCCCceEEEEeCCCC-----CCcHHHHhhceEeccCCcc
Q psy12682 438 NCHLAK---------SWMPVLEKMCESLSPETTHPDFRLWLTSYPSN-----LFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 438 N~HL~~---------swl~~Le~ile~l~~~~~h~~FRLwLts~p~~-----~fP~~lLq~s~Kv~~Epp~ 494 (755)
++|... .....|..+++ +.++++.+++.... .++..++.++..+.+.+|+
T Consensus 123 e~~~l~~~~~~~~~~~~~~~l~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~ 186 (195)
T 1jbk_A 123 ELHTMVGAGKADGAMDAGNMLKPALA-------RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp TGGGGTT------CCCCHHHHHHHHH-------TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred CHHHHhccCcccchHHHHHHHHHhhc-------cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCC
Confidence 999763 22333433332 25678888886554 6788999998888888875
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.39 E-value=1.2e+02 Score=31.21 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=70.5
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCCC---------------------CceEEecCCCch-HHHHHHHHHHHh-----c
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGGS---------------------KFSALSLGQGQG-PIAVKLINDGLK-----K 430 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~~---------------------~l~~iSLG~gq~-~~A~~~I~~a~~-----~ 430 (755)
+++|.-++|+==|..+..+|+..+.... .+..+.-+...+ ......++.+.. .
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence 5677777888778888888876542100 122232221111 223445554432 2
Q ss_pred CCeEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 431 GDWVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 431 G~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
+.-|++.++|... .-...|-+.++. ..++.++.+++...+.++..+..+|..+.+.||+
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~ 179 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHhheeEeeCCCCC
Confidence 3578889999654 334445555543 4567899999877778889999999999998875
No 20
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.21 E-value=1.7e+02 Score=25.06 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC------CCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHH
Q psy12682 73 PDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSE------GNILEDESAIQVLSSSKVLSNEIQEKQAVAEVT 141 (755)
Q Consensus 73 PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~------g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~ 141 (755)
-++..+..+|.....+++.++..++..+ ..|.... |.-++++.....+........++..++.+.+..
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l-~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~ 86 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAI-EELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777777777544 5555422 566776554455555555555555555444433
No 21
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=39.19 E-value=53 Score=25.85 Aligned_cols=41 Identities=22% Similarity=0.445 Sum_probs=35.9
Q ss_pred HHHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy12682 66 TVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSS 106 (755)
Q Consensus 66 ~vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~ 106 (755)
..+..|--||..+.......+++++.++.+|--++|+.|-.
T Consensus 13 d~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkvlv~ 53 (65)
T 3t97_B 13 DIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIK 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45667778899999999999999999999999999998854
No 22
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=38.38 E-value=49 Score=33.60 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=70.6
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCC--CCceEEecCCCch-HHHHHHHHHHH-------hcCCeEEeccccccc-chh
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGG--SKFSALSLGQGQG-PIAVKLINDGL-------KKGDWVLLQNCHLAK-SWM 446 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~--~~l~~iSLG~gq~-~~A~~~I~~a~-------~~G~WVlLqN~HL~~-swl 446 (755)
+++|.-+||+==+..+..+|+..+... ..+..+.-+...+ ......+.... ..+.-|++.++|... .-.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 127 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 127 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHH
Confidence 477787888888888888887742100 1133333222222 12223343332 235678889999664 333
Q ss_pred HHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 447 PVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 447 ~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
..|-+.++. ..++.++.+++...+.++..+..+|..+.+.|++
T Consensus 128 ~~L~~~le~-----~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~ 170 (327)
T 1iqp_A 128 QALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 170 (327)
T ss_dssp HHHHHHHHH-----TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC
T ss_pred HHHHHHHHh-----cCCCCeEEEEeCCccccCHHHHhhCcEEEecCCC
Confidence 445555554 3467899999988788999999999988888765
No 23
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=37.47 E-value=1e+02 Score=31.04 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=57.9
Q ss_pred CCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchH--HHH--------------HHHHHHHh--cCCeEEe
Q psy12682 375 CTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGP--IAV--------------KLINDGLK--KGDWVLL 436 (755)
Q Consensus 375 ~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~--~A~--------------~~I~~a~~--~G~WVlL 436 (755)
+..|++|+-+||+==+.....+|+........+..+..+.-... .++ ..+..+.. .|+.++|
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~l 125 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILF 125 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEE
Confidence 44588999999998888888888775321234555554432211 000 12334433 5679999
Q ss_pred cccccccc-hhHHHHHHHhhhC---CCCCCCCce---EEEEeCC
Q psy12682 437 QNCHLAKS-WMPVLEKMCESLS---PETTHPDFR---LWLTSYP 473 (755)
Q Consensus 437 qN~HL~~s-wl~~Le~ile~l~---~~~~h~~FR---LwLts~p 473 (755)
.+++..+. -...|-++++.-. ......+|| +++||..
T Consensus 126 DEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 126 DAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp ETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred eChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 99997664 3344556665421 111224566 9999877
No 24
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=35.19 E-value=1.7e+02 Score=27.86 Aligned_cols=70 Identities=10% Similarity=0.193 Sum_probs=42.6
Q ss_pred EEEecCCCCChHHH-HHHHHHhcCCCCCCceEEecCCCchH-HHH-HHHHHHHhcCCeEEec--ccccccchhHHHHHHH
Q psy12682 379 LIFLLTPGADPTAV-LLKFADDMGFGGSKFSALSLGQGQGP-IAV-KLINDGLKKGDWVLLQ--NCHLAKSWMPVLEKMC 453 (755)
Q Consensus 379 ii~ils~g~DP~~~-i~~lA~~~~~~~~~l~~iSLG~gq~~-~A~-~~I~~a~~~G~WVlLq--N~HL~~swl~~Le~il 453 (755)
+|++-....|.+.. +.+++++. .++..+. ....|. .|. ..++. .+|.||++= ++-+.+.|+..+-+.+
T Consensus 37 iIvvDd~S~d~t~~~~~~~~~~~----~~i~~i~-~~n~G~~~a~N~g~~~--a~g~~i~~lD~Dd~~~~~~l~~l~~~~ 109 (240)
T 3bcv_A 37 IILIDDESPDNCPKICDDYAAQY----PNIKVIH-KKNAGLGMACNSGLDV--ATGEYVAFCDSDDYVDSDMYMTMYNVA 109 (240)
T ss_dssp EEEEECCCSSSHHHHHHHHHHHC----SSEEEEE-CCCCCHHHHHHHHHHH--CCSSEEEECCTTCCCCTTHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhhC----CCEEEEE-CCCCChHHHHHHHHHH--cCCCEEEEECCCCcCCHHHHHHHHHHH
Confidence 66666555677755 45566553 2566665 344443 333 34443 389999995 4557788988776655
Q ss_pred hh
Q psy12682 454 ES 455 (755)
Q Consensus 454 e~ 455 (755)
+.
T Consensus 110 ~~ 111 (240)
T 3bcv_A 110 QK 111 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.44 E-value=2.8e+02 Score=30.09 Aligned_cols=62 Identities=23% Similarity=0.272 Sum_probs=37.9
Q ss_pred cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC-CCCCCCHHHHHHHHhhhhchHHHHH
Q psy12682 72 RPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSE-GNILEDESAIQVLSSSKVLSNEIQE 133 (755)
Q Consensus 72 ~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~-g~ILdd~~lI~tL~~~K~~s~eI~~ 133 (755)
+-.+++++.++-+...+.++...+.+..+.+.....+ -...+..+.+..++...+..+++.+
T Consensus 362 ~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (487)
T 3oja_A 362 KITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHH
Confidence 3356667777777777777777777777777776665 3444555555544444444443333
No 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=33.16 E-value=2.2e+02 Score=29.71 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=70.6
Q ss_pred CCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCC------Cch-HHHHHHHHHHHh-cCCeEEecccccccc--
Q psy12682 375 CTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQ------GQG-PIAVKLINDGLK-KGDWVLLQNCHLAKS-- 444 (755)
Q Consensus 375 ~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~------gq~-~~A~~~I~~a~~-~G~WVlLqN~HL~~s-- 444 (755)
+..++++.-+||+==|.....+|.+.+. .+..++... |+. .....++..|.. .+.-|+|.++|....
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 159 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANS---TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 159 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTC---EEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC---CEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccC
Confidence 4456999999999999999999998864 565555321 222 334455555554 456888999995432
Q ss_pred ----------hhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceE-eccCCc
Q psy12682 445 ----------WMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVK-ITNEPP 493 (755)
Q Consensus 445 ----------wl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~K-v~~Epp 493 (755)
....|-..++.+. ....+..++.++.....++..++++.-+ +.+.+|
T Consensus 160 ~~~~~~~~~~~~~~ll~~l~~~~--~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P 217 (355)
T 2qp9_X 160 GEGESEASRRIKTELLVQMNGVG--NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLP 217 (355)
T ss_dssp ----CTHHHHHHHHHHHHHHHCC-----CCEEEEEEESCGGGSCHHHHHTCCEEEECCCC
T ss_pred CCCcchHHHHHHHHHHHHhhccc--ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCc
Confidence 1222222233221 2346788888888777889999998744 444444
No 27
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=32.74 E-value=25 Score=25.91 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12682 624 NTVLVQEMGRFNVLLT 639 (755)
Q Consensus 624 ~~vl~qE~~r~n~ll~ 639 (755)
..-..|||+|+|+||.
T Consensus 27 c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 27 CSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4556799999999986
No 28
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=31.87 E-value=97 Score=34.73 Aligned_cols=116 Identities=20% Similarity=0.129 Sum_probs=70.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCch----------------HHHHHHHHHHHhcCCeEEeccc
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQG----------------PIAVKLINDGLKKGDWVLLQNC 439 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~----------------~~A~~~I~~a~~~G~WVlLqN~ 439 (755)
..+++++-+||+==|.....+|...+. .+..|+++.-.. ......+..|...+.-++|..+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEi 184 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEI 184 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhh
Confidence 346778888999888888888887753 555666654211 0112344555556667888888
Q ss_pred ccccchhH--HHHHHHhhhCCCC------------C-CCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 440 HLAKSWMP--VLEKMCESLSPET------------T-HPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 440 HL~~swl~--~Le~ile~l~~~~------------~-h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
|-...=.. ....+++.+.... . .+++++.+|+.+...||..++.++..+.+.+|+
T Consensus 185 d~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~ 254 (543)
T 3m6a_A 185 DKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254 (543)
T ss_dssp SSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCC
T ss_pred hhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCC
Confidence 75432111 0122222221111 1 167899999999999999999999888887775
No 29
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=31.74 E-value=4.2e+02 Score=26.77 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=59.7
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHH-------------------HHHHHHhcCCeEEe
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVK-------------------LINDGLKKGDWVLL 436 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~-------------------~I~~a~~~G~WVlL 436 (755)
..|+++.-.||+==+.....++.........+..|..+.-.....+. .++. ..|+.|+|
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~--a~~g~L~L 102 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE--ADGGTLFL 102 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHH--HTTSEEEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHh--cCCCEEEE
Confidence 46888988899887777777776542222456667666544333222 2222 35789999
Q ss_pred cccccccchh-HHHHHHHhhhC------CCCCCCCceEEEEeCCC
Q psy12682 437 QNCHLAKSWM-PVLEKMCESLS------PETTHPDFRLWLTSYPS 474 (755)
Q Consensus 437 qN~HL~~swl-~~Le~ile~l~------~~~~h~~FRLwLts~p~ 474 (755)
.++|..+.-+ ..|-+.++... ....+.++|+..++...
T Consensus 103 DEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 103 DEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp ESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred eccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 9999766432 33444454321 11245789999999765
No 30
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=31.07 E-value=34 Score=32.81 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=26.0
Q ss_pred EEEecCCCC-ChHH--HHHHHHHhcCCCCCCceEEecCCCchHHHHHHHHHHHhc
Q psy12682 379 LIFLLTPGA-DPTA--VLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKK 430 (755)
Q Consensus 379 ii~ils~g~-DP~~--~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~I~~a~~~ 430 (755)
+||+.+++. ||.. .+.+.+++.|+ ++.+|.+|.+....+.+.+-++...
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi---~v~~Ig~G~~~~~~~l~~la~~~n~ 161 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNV---AIDIIHIGELQNESALQHFIDAANS 161 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTE---EEEEEEESCC---CHHHHHHHHHCS
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCC---EEEEEEeCCCCccHHHHHHHHhccC
Confidence 445555553 3432 34444566665 8999999998653114444444443
No 31
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=29.88 E-value=2.8e+02 Score=28.31 Aligned_cols=109 Identities=9% Similarity=-0.006 Sum_probs=68.5
Q ss_pred EEEecCCCCChHHHHHHHHHhcCC---CCCCceEEecCC-Cch-HHHHHHHHHHHhc---C--CeEEecccccccch-hH
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGF---GGSKFSALSLGQ-GQG-PIAVKLINDGLKK---G--DWVLLQNCHLAKSW-MP 447 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~---~~~~l~~iSLG~-gq~-~~A~~~I~~a~~~---G--~WVlLqN~HL~~sw-l~ 447 (755)
.+|.-+||+==+.....+|+..+. ....+..+.-.. .-+ ...+.+++.|... | .-|++.++|....- ..
T Consensus 21 ~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~n 100 (305)
T 2gno_A 21 ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAAN 100 (305)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHH
Confidence 555666777666677778775311 123555555322 222 3467788877643 2 46778999976532 23
Q ss_pred HHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 448 VLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 448 ~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
.|-+.+| ++.++-+++++|....+++..|..+ .+.+.||+
T Consensus 101 aLLk~LE-----ep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~ 140 (305)
T 2gno_A 101 AFLKALE-----EPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNV 140 (305)
T ss_dssp HTHHHHH-----SCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCC
T ss_pred HHHHHHh-----CCCCCeEEEEEECChHhChHHHHce--eEeCCCCC
Confidence 4556665 3557889999886666888899988 66666654
No 32
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=29.52 E-value=3.1e+02 Score=27.50 Aligned_cols=102 Identities=9% Similarity=0.080 Sum_probs=62.6
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCC------Cch-HHHHHHHHHH-----HhcCCeEEecccccccc--
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQ------GQG-PIAVKLINDG-----LKKGDWVLLQNCHLAKS-- 444 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~------gq~-~~A~~~I~~a-----~~~G~WVlLqN~HL~~s-- 444 (755)
+++.-+||+==|.....+|++.|. ++..++.++ |.. ......++.| ...+.-|+|.+++-...
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~---~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~ 115 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRM 115 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTC---CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC---CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCC
Confidence 556678999999999999999975 787887654 211 2334556666 33567888999863322
Q ss_pred ------------hhHHHHHHHhhhC--------CCCCCCCceEEEEeCCCCCCcHHHHh
Q psy12682 445 ------------WMPVLEKMCESLS--------PETTHPDFRLWLTSYPSNLFPVSVLQ 483 (755)
Q Consensus 445 ------------wl~~Le~ile~l~--------~~~~h~~FRLwLts~p~~~fP~~lLq 483 (755)
....|-++++... .....++..++.|+.....+|..+++
T Consensus 116 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R 174 (293)
T 3t15_A 116 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIR 174 (293)
T ss_dssp --------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHH
T ss_pred CCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhC
Confidence 2233444443221 11234578889999888889999986
No 33
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.98 E-value=27 Score=26.34 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12682 624 NTVLVQEMGRFNVLLT 639 (755)
Q Consensus 624 ~~vl~qE~~r~n~ll~ 639 (755)
.+---|||+|+|+||+
T Consensus 34 c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 34 CSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566799999999997
No 34
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=25.20 E-value=3.1e+02 Score=23.40 Aligned_cols=84 Identities=13% Similarity=0.070 Sum_probs=56.3
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHH
Q psy12682 62 QLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDK---ILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVA 138 (755)
Q Consensus 62 qlL~~vv~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~---LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~ 138 (755)
++|...-..|..-+..+|..-.++..+-+.....|..+ ++..+--+-|.=+||.+ ..+-++|..-.+|+..++|-
T Consensus 6 ~wLq~T~e~E~q~~~~kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD--~~Il~Ak~aL~evt~~l~Er 83 (101)
T 3teq_A 6 KWLQLTHEVEVQYYNIKKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVD--HKILTAKQALSEATAALRER 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTT--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888889988888887777777777665 66555555555466555 45556666666666665555
Q ss_pred HHHHHHHHH
Q psy12682 139 EVTEKSIDA 147 (755)
Q Consensus 139 ~~~~~~i~~ 147 (755)
..-=.+|+.
T Consensus 84 ~~RW~qIE~ 92 (101)
T 3teq_A 84 LHRWQQIEI 92 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 35
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=25.19 E-value=5e+02 Score=25.55 Aligned_cols=116 Identities=12% Similarity=0.123 Sum_probs=67.8
Q ss_pred CCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCC------Cch-HHHHHHHHHHHh-cCCeEEecccccccc--
Q psy12682 375 CTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQ------GQG-PIAVKLINDGLK-KGDWVLLQNCHLAKS-- 444 (755)
Q Consensus 375 ~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~------gq~-~~A~~~I~~a~~-~G~WVlLqN~HL~~s-- 444 (755)
+..++++.-+||+==|.....+|.+.+. .+..++.+. |.+ ......+..+.. .+.-|+|..+|....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 129 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---TFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER 129 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---EEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---CeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccc
Confidence 3457899999999999999999998764 565565433 222 233445555543 456888999975521
Q ss_pred ------hhH----HHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhce-EeccCCc
Q psy12682 445 ------WMP----VLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGV-KITNEPP 493 (755)
Q Consensus 445 ------wl~----~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~-Kv~~Epp 493 (755)
... .|-..++...........++..++.....++..+++++- .+.+.+|
T Consensus 130 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p 189 (297)
T 3b9p_A 130 SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLP 189 (297)
T ss_dssp -----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCC
T ss_pred ccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCc
Confidence 111 222223333211122457777777766678888888763 3444433
No 36
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.06 E-value=2.7e+02 Score=30.72 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy12682 74 DLEAEKNQLIVQGADNKRQLKEIEDKILQI 103 (755)
Q Consensus 74 eLe~~r~~L~~~~~~~k~~L~~lEd~LL~~ 103 (755)
+|+++|.+++.+..+.+.+...+-++|=+.
T Consensus 37 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888877543
No 37
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.05 E-value=3.5e+02 Score=26.27 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=45.2
Q ss_pred hhhcccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHH-HHHHHHHHHHHH
Q psy12682 69 AKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEK-QAVAEVTEKSID 146 (755)
Q Consensus 69 ~~E~PeLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~k-l~e~~~~~~~i~ 146 (755)
..+.-.++...+++..+..++-..-.+.|..|+... +..|++=|..-.+...+ +.++++.++++.
T Consensus 145 ~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF-------------~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~~ 210 (213)
T 1ik9_A 145 QKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRF-------------ILVLNEKKTKIRSLHNKLLNAAQEREKDIK 210 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 445556677777777777777777778888888754 56677777777777744 456777766654
No 38
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=24.91 E-value=2.2e+02 Score=33.07 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=71.3
Q ss_pred cEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHH--HHHHHHHHH--hcCCeEEecccccccc-hhHHHHHH
Q psy12682 378 PLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPI--AVKLINDGL--KKGDWVLLQNCHLAKS-WMPVLEKM 452 (755)
Q Consensus 378 Pii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~--A~~~I~~a~--~~G~WVlLqN~HL~~s-wl~~Le~i 452 (755)
|++|+-+||+==+.....+|+.......++..|.++.-.+.. ....+..+. ..|+.|+|.+++-++. ....|-++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~ 602 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQV 602 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHH
Confidence 588888899988888888887752213467777765532210 011112222 3578999999997664 33446666
Q ss_pred HhhhC--C----CCCCCCceEEEEeCCCCC------------CcHHHHhhc-eEeccCCcc
Q psy12682 453 CESLS--P----ETTHPDFRLWLTSYPSNL------------FPVSVLQNG-VKITNEPPK 494 (755)
Q Consensus 453 le~l~--~----~~~h~~FRLwLts~p~~~------------fP~~lLq~s-~Kv~~Epp~ 494 (755)
++.-. . .....++++++||...+. |+..++.+. ..+.+.||.
T Consensus 603 le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~ 663 (758)
T 3pxi_A 603 LEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLE 663 (758)
T ss_dssp HHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--C
T ss_pred hccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCC
Confidence 65411 0 123568999999975443 777788777 666666653
No 39
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=24.47 E-value=4e+02 Score=27.23 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHhhCCCCCCCCH
Q psy12682 73 PDLEAEKNQLIVQGADNKRQLKEIED---------KILQILSSSEGNILEDE 115 (755)
Q Consensus 73 PeLe~~r~~L~~~~~~~k~~L~~lEd---------~LL~~Ls~s~g~ILdd~ 115 (755)
.++-++|.++..+..+.+.++++|+. ..|..|++-.|.-++|.
T Consensus 13 ~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds 64 (302)
T 3ibp_A 13 SNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSS 64 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCH
Confidence 45556777777777777777777776 46788888888888887
No 40
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=23.95 E-value=1.5e+02 Score=26.57 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=66.8
Q ss_pred CccEEEecCCCCChHHHHHHHHHhcCC-------CCCCceEEecCC------Cch---HHHHHHHHHHHhc--CCeEEec
Q psy12682 376 TVPLIFLLTPGADPTAVLLKFADDMGF-------GGSKFSALSLGQ------GQG---PIAVKLINDGLKK--GDWVLLQ 437 (755)
Q Consensus 376 ~tPii~ils~g~DP~~~i~~lA~~~~~-------~~~~l~~iSLG~------gq~---~~A~~~I~~a~~~--G~WVlLq 437 (755)
..++++.-++|+==|..+..+|+.... ....+..+.+.. ..+ ....+.+..+... +..++|.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFID 122 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEET
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 346777778888777778888876411 012333343321 111 1234444544443 3478889
Q ss_pred cccccc----------chhHHHHHHHhhhCCCCCCCCceEEEEeCCCC-----CCcHHHHhhceEeccCCcc
Q psy12682 438 NCHLAK----------SWMPVLEKMCESLSPETTHPDFRLWLTSYPSN-----LFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 438 N~HL~~----------swl~~Le~ile~l~~~~~h~~FRLwLts~p~~-----~fP~~lLq~s~Kv~~Epp~ 494 (755)
++|... .....|...++ ..++++.+++.+.+ .++..+++++..+...+|+
T Consensus 123 e~~~l~~~~~~~~~~~~~~~~l~~~~~-------~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 123 EIHTVVGAGAVAEGALDAGNILKPMLA-------RGELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp TGGGGSSSSSSCTTSCCTHHHHHHHHH-------TTCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred CHHHhcccccccccchHHHHHHHHHHh-------cCCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 999763 23333434333 25678888886544 5788999999988888874
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=23.68 E-value=5.7e+02 Score=25.88 Aligned_cols=73 Identities=10% Similarity=-0.008 Sum_probs=41.5
Q ss_pred HHHHHHHhcCC---eEEecccccccch---hHHHHHHHhhhCCCCCCCCceEEEEeCCC---CCCcHHHHhhc--eEecc
Q psy12682 422 KLINDGLKKGD---WVLLQNCHLAKSW---MPVLEKMCESLSPETTHPDFRLWLTSYPS---NLFPVSVLQNG--VKITN 490 (755)
Q Consensus 422 ~~I~~a~~~G~---WVlLqN~HL~~sw---l~~Le~ile~l~~~~~h~~FRLwLts~p~---~~fP~~lLq~s--~Kv~~ 490 (755)
..+..+...++ .|+|.++|..... ...|..+++.......+.++++.+++... ..+...+..++ ..+.+
T Consensus 119 ~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l 198 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVF 198 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCB
T ss_pred HHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEee
Confidence 33444443333 7889999966542 23455555543211116789999998654 45777777776 56777
Q ss_pred CCcc
Q psy12682 491 EPPK 494 (755)
Q Consensus 491 Epp~ 494 (755)
.|++
T Consensus 199 ~~l~ 202 (387)
T 2v1u_A 199 PPYT 202 (387)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 42
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=23.45 E-value=1.8e+02 Score=27.94 Aligned_cols=69 Identities=7% Similarity=0.150 Sum_probs=41.4
Q ss_pred EEEecCCCCChHHHHH-HHHHhcCCCCCCceEEecC--------CCchH-HHH-HHHHHHHhcCCeEEec--ccccccch
Q psy12682 379 LIFLLTPGADPTAVLL-KFADDMGFGGSKFSALSLG--------QGQGP-IAV-KLINDGLKKGDWVLLQ--NCHLAKSW 445 (755)
Q Consensus 379 ii~ils~g~DP~~~i~-~lA~~~~~~~~~l~~iSLG--------~gq~~-~A~-~~I~~a~~~G~WVlLq--N~HL~~sw 445 (755)
+|++-....|.+..+. +++. . .++..+... ...|. .|. ..++.| +|.||++- ++-+.+.|
T Consensus 33 iivvDd~S~d~t~~~~~~~~~--~---~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a--~g~~i~~lD~Dd~~~~~~ 105 (255)
T 1qg8_A 33 LFIMDDNSNEETLNVIRPFLN--D---NRVRFYQSDISGVKERTEKTRYAALINQAIEMA--EGEYITYATDDNIYMPDR 105 (255)
T ss_dssp EEEEECSCCHHHHHHHGGGGG--S---TTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHC--CCSEEEEEETTEEECTTH
T ss_pred EEEEECCCCchHHHHHHHHhh--c---CCEEEEecccccccccccccCHHHHHHHHHHHc--CCCEEEEeCCCCccChHH
Confidence 6666555567665543 2322 2 367777776 45553 333 444443 89999984 55677888
Q ss_pred hHHHHHHHh
Q psy12682 446 MPVLEKMCE 454 (755)
Q Consensus 446 l~~Le~ile 454 (755)
+..+-+.++
T Consensus 106 l~~~~~~~~ 114 (255)
T 1qg8_A 106 LLKMVRELD 114 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665554
No 43
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=23.11 E-value=3.3e+02 Score=23.83 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=56.3
Q ss_pred CCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchH-HHHHHHHHHHhcCCeEEecccccccchhHHHHHHH
Q psy12682 375 CTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGP-IAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMC 453 (755)
Q Consensus 375 ~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~-~A~~~I~~a~~~G~WVlLqN~HL~~swl~~Le~il 453 (755)
...|+++.-.||+-=+.....++......+..+. +..+.-.+. .....++.| +|+=++|.++|..+.=. -.+++
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a--~~g~l~ldei~~l~~~~--q~~Ll 97 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA--QGGTLVLSHPEHLTREQ--QYHLV 97 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH--TTSCEEEECGGGSCHHH--HHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc--CCcEEEEcChHHCCHHH--HHHHH
Confidence 3468999999999887777777765432223555 655543221 122334443 67789999999665422 22233
Q ss_pred hhhCCCCCCCCceEEEEeCC
Q psy12682 454 ESLSPETTHPDFRLWLTSYP 473 (755)
Q Consensus 454 e~l~~~~~h~~FRLwLts~p 473 (755)
..+ ...+.++|+..|+..
T Consensus 98 ~~l--~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 98 QLQ--SQEHRPFRLIGIGDT 115 (145)
T ss_dssp HHH--HSSSCSSCEEEEESS
T ss_pred HHH--hhcCCCEEEEEECCc
Confidence 333 234678999999865
No 44
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=23.04 E-value=4.3e+02 Score=26.69 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=43.9
Q ss_pred cCCeEEecccccccc-hhHHHHHHHhh----hCCCC----CCCCceEEEEeCCCC-CCcHHHHhhce-EeccCCccc
Q psy12682 430 KGDWVLLQNCHLAKS-WMPVLEKMCES----LSPET----THPDFRLWLTSYPSN-LFPVSVLQNGV-KITNEPPKG 495 (755)
Q Consensus 430 ~G~WVlLqN~HL~~s-wl~~Le~ile~----l~~~~----~h~~FRLwLts~p~~-~fP~~lLq~s~-Kv~~Epp~g 495 (755)
+|+.|+|..+|..+. -...|-+.++. +.... .+.+|+++.|+.|.. .++..|+.+.- ++...+|+.
T Consensus 144 ~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRD 220 (350)
T ss_dssp TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCS
T ss_pred CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCc
Confidence 478999999996653 33334444443 11111 134899999998755 79999999984 478887743
No 45
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.80 E-value=3e+02 Score=30.08 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q psy12682 74 DLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDA 147 (755)
Q Consensus 74 eLe~~r~~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~ 147 (755)
+++++|.+++.+..+.+.+...+.++|=+.-. +|. +-++| +.++.++.+++++.++...++++
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~--~~~--~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRK--KGE--PVDEL-------LAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SCC--CTHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccc--cHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888988888888888888888755322 231 22333 33444455555555444444443
No 46
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.64 E-value=3.5e+02 Score=27.35 Aligned_cols=68 Identities=12% Similarity=0.212 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q psy12682 89 NKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHS 159 (755)
Q Consensus 89 ~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~ 159 (755)
++.--+++++.|-++++.+.-+..+=+++|++|.++ ..+....-.++.....+++++.+.|+.....|
T Consensus 34 ~~~~~~q~~~~l~~~~~~~~~~~~~~~~~v~~l~~~---y~~l~~~~~~~~~~~~~~~~~K~~yk~~~d~~ 101 (267)
T 3htk_C 34 YQQCYKQIDETINQLVDSTSPSTIGIEEQVADITST---YKLLSTYESESNSFDEHIKDLKKNFKQSSDAC 101 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSCSHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 444456677777788876654545557788887774 44555566688888999999999999776554
No 47
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=22.18 E-value=1.9e+02 Score=32.39 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=45.5
Q ss_pred EEEecCCCCChH--HHHHHHHHhcCCCCCCceEEecCCCchH-HHH-HHHHHHHhcCCeEEecccc--cccchhHHHHHH
Q psy12682 379 LIFLLTPGADPT--AVLLKFADDMGFGGSKFSALSLGQGQGP-IAV-KLINDGLKKGDWVLLQNCH--LAKSWMPVLEKM 452 (755)
Q Consensus 379 ii~ils~g~DP~--~~i~~lA~~~~~~~~~l~~iSLG~gq~~-~A~-~~I~~a~~~G~WVlLqN~H--L~~swl~~Le~i 452 (755)
||+|-....|++ ..+.+++++. .+++.|......|. .|. ..++. .+|.||++=|.| +.+.|+..|-..
T Consensus 147 IIVVDDgS~D~tl~~~l~~~~~~~----~~v~vi~~~~n~G~~~A~N~G~~~--A~gd~i~fLD~D~~~~p~~L~~ll~~ 220 (570)
T 2d7i_A 147 IVLVDDFSDREHLKKPLEDYMALF----PSVRILRTKKREGLIRTRMLGASV--ATGDVITFLDSHCEANVNWLPPLLDR 220 (570)
T ss_dssp EEEEECSCCCGGGTHHHHHHHTTS----TTEEEEECSSCCCHHHHHHHHHHH--CCSSEEEECCSSEEECTTCSHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHHhC----CeEEEEECCCCCCHHHHHHHHHHh--cCCCEEEEEcCCccccccHHHHHHHH
Confidence 666665567877 4456666543 36788888766664 333 33333 479999997766 667899886555
Q ss_pred Hh
Q psy12682 453 CE 454 (755)
Q Consensus 453 le 454 (755)
++
T Consensus 221 l~ 222 (570)
T 2d7i_A 221 IA 222 (570)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 48
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=21.93 E-value=47 Score=35.39 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=39.8
Q ss_pred EEeCCee--eeeCCCceEEEEeCC--CCCCCChhhhhceEEEEeEeChhhHHH
Q psy12682 13 IKLGDTV--IEYNDNFKFYITTKL--RNPHYLPEIAVKVTLLNFMITPVGLAD 61 (755)
Q Consensus 13 I~igd~~--id~~p~FrL~L~Tk~--~np~~~pei~~~vtvINFtvT~~gLe~ 61 (755)
|..|-+. +-.||+-=-+|+||. .+|++..|--+.-+..||+||.+|+|-
T Consensus 276 v~~~~r~vtL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~Ey 328 (423)
T 3j0f_I 276 VIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEY 328 (423)
T ss_pred eEeccceEEEEecCCCCceEEEeccCCCCCCchhheecceEEEEEECCcceEE
Confidence 4444443 556788888999995 479999999999999999999999983
No 49
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.69 E-value=3.1e+02 Score=28.01 Aligned_cols=111 Identities=15% Similarity=0.217 Sum_probs=70.6
Q ss_pred EEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCC--ch-HHHHHHHHHHHhc-------CCeEEecccccccc-hhH
Q psy12682 379 LIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQG--QG-PIAVKLINDGLKK-------GDWVLLQNCHLAKS-WMP 447 (755)
Q Consensus 379 ii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~g--q~-~~A~~~I~~a~~~-------G~WVlLqN~HL~~s-wl~ 447 (755)
++|.-++|+==+..+..+|+...-.......+.+... .+ ....+.+....+. ..-+++.++|.... -..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~ 128 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 128 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHH
Confidence 7888888988888888888874210112223333322 22 2344455544432 35677899996553 223
Q ss_pred HHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 448 VLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 448 ~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
.|-+.++.. .++-++.+++.....++..+.++|..+.+.|++
T Consensus 129 ~L~~~le~~-----~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~ 170 (340)
T 1sxj_C 129 ALRRVIERY-----TKNTRFCVLANYAHKLTPALLSQCTRFRFQPLP 170 (340)
T ss_dssp HHHHHHHHT-----TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHhcC-----CCCeEEEEEecCccccchhHHhhceeEeccCCC
Confidence 465666642 356788888887788999999999988887754
No 50
>2xfc_B E2 envelope glycoprotein; receptor binding, membrane fusion, icosahedral envelo; 9.00A {Chikungunya virus}
Probab=21.55 E-value=39 Score=36.00 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=39.9
Q ss_pred EEEeCCe--eeeeCCCceEEEEeCC--CCCCCChhhhhceEEEEeEeChhhHH
Q psy12682 12 SIKLGDT--VIEYNDNFKFYITTKL--RNPHYLPEIAVKVTLLNFMITPVGLA 60 (755)
Q Consensus 12 ~I~igd~--~id~~p~FrL~L~Tk~--~np~~~pei~~~vtvINFtvT~~gLe 60 (755)
.|+.|-+ .+..+|+-=-+|+||. ..|++..|--+.-+..||+||.+|+|
T Consensus 275 ~v~~~~r~v~L~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (423)
T 2xfc_B 275 TVTYGKNQVIMLLYPDHPTLLSYRNMGEEPNYQEEWVMHKKEVVLTVPTEGLE 327 (423)
T ss_dssp EEEEETTEEEEEECCSSCEEEEEEC-CCCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred ceEeccceEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 3444433 3567899999999995 47999999999999999999999987
No 51
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.07 E-value=47 Score=33.85 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=25.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHh---cCCCCCCceEEecCCCch
Q psy12682 377 VPLIFLLTPGADPTAVLLKFADD---MGFGGSKFSALSLGQGQG 417 (755)
Q Consensus 377 tPii~ils~g~DP~~~i~~lA~~---~~~~~~~l~~iSLG~gq~ 417 (755)
.=|||+.+++.+--..+.++|++ .|+ .+++|++|.+..
T Consensus 109 rIIlf~ds~~~~~~~~l~~lak~lkk~gI---~v~vIgFG~~~~ 149 (268)
T 4b4t_W 109 RIVAFVCSPISDSRDELIRLAKTLKKNNV---AVDIINFGEIEQ 149 (268)
T ss_dssp EEEEEECSCCSSCHHHHHHHHHHHHHHTE---EEEEEEESSCCS
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHcCC---EEEEEEeCCCcc
Confidence 34666667776655666677654 454 789999998753
No 52
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.70 E-value=5.1e+02 Score=26.18 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCeEEeccccccc-chhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCcc
Q psy12682 431 GDWVLLQNCHLAK-SWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPK 494 (755)
Q Consensus 431 G~WVlLqN~HL~~-swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~ 494 (755)
..-|+|..+|... .-...|-+.++.. .++.++.++|.....++..+..+|..+.+.||+
T Consensus 135 ~~vlilDE~~~L~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~ 194 (354)
T 1sxj_E 135 YKCVIINEANSLTKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPS 194 (354)
T ss_dssp CEEEEEECTTSSCHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCC
T ss_pred CeEEEEeCccccCHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcC
Confidence 3478889988633 2223455666543 356889999977778999999999999998876
Done!