RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12682
(755 letters)
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein
motor. This family represents the C-terminal region of
dynein heavy chain. The chain also contains ATPase
activity and microtubule binding ability and acts as a
motor for the movement of organelles and vesicles along
microtubules. Dynein is also involved in cilia and
flagella movement. The dynein subunit consists of at
least two heavy chains and a number of intermediate and
light chains. The 380 kDa motor unit of dynein belongs
to the AAA class of chaperone-like ATPases. The core of
the 380 kDa motor unit contains a concatenated chain of
six AAA modules, of which four correspond to the ATP
binding sites with P-loop signatures described
previously, and two are modules in which the P loop has
been lost in evolution. This C-terminal domain carries
the D6 region of the dynein motor where the P-loop has
been lost in evolution but the general structure of a
potential ATP binding site appears to be retained.
Length = 706
Score = 409 bits (1052), Expect = e-132
Identities = 154/316 (48%), Positives = 210/316 (66%), Gaps = 6/316 (1%)
Query: 261 LDNPHKNPT-TWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQ 319
+++ NP W+ Q W +CRL EL+EF+G+ D + WK+ YD++ P++ LPQ
Sbjct: 1 IESTVPNPKLDWLTVQQWGSICRLSELEEFRGLDDDIEKNAKRWKKWYDSEAPEEEKLPQ 60
Query: 320 PWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPL 379
W+D+ FQKL +LR +R D++ A +NFV LG+KFVEP P D+ Y +S + P+
Sbjct: 61 EWKDRKSAFQKLLLLRALRPDRMTYAARNFVSEKLGEKFVEPQPLDLSKIYEESSPSTPI 120
Query: 380 IFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNC 439
F+L+PG DP+ + K A MGFG KF ++SLGQGQGPIA K I K G WV+LQN
Sbjct: 121 FFILSPGVDPSKDVEKLAKKMGFGK-KFHSVSLGQGQGPIAEKAIETAAKSGHWVMLQNI 179
Query: 440 HLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRAN 499
HLA SW+P LEK ESL+P +HPDFRL+LT+ P+ P+ +LQN +KITNEPP GL+AN
Sbjct: 180 HLAPSWLPTLEKKLESLTPG-SHPDFRLFLTAEPAPSIPIGLLQNSIKITNEPPTGLKAN 238
Query: 500 INRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETD 559
+ R+ S E C++P F+++LF LCFFHA++ ER KFGPLGWN Y+FNE D
Sbjct: 239 LLRALSSF---TQETLEMCKKPAEFKRILFLLCFFHAVVQERRKFGPLGWNKSYEFNEGD 295
Query: 560 LKISLVQLKMFLDQYS 575
L+ISL L +LD +
Sbjct: 296 LRISLDVLDNYLDANA 311
Score = 133 bits (337), Expect = 3e-32
Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 568 KMFLDQYSEAGGSAGDAKSTEDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVL 627
+ Q EAGGS G S E+++ +V DIL+KLP F + K + VL
Sbjct: 416 TLLELQPREAGGSGGSGVSREEVVKQVLRDILEKLPKLFPIEEIKLKRTEEIKDPLFRVL 475
Query: 628 VQEMGRFNVLLTTIRNSL----------IVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLK 677
QE+ R N LL IR SL + M+ DLE++ K++ G++P +WAK +YPSLK
Sbjct: 476 FQEIERMNKLLKEIRRSLKELDLGLKGELTMTNDLEDLAKALFKGRVPASWAKLAYPSLK 535
Query: 678 PLGSYVQDFLHRLEFLQHI 696
PLGS+V D L R+ LQ
Sbjct: 536 PLGSWVTDLLRRIRQLQDW 554
>gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5. The 380 kDa
motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This particular family is the D5 ATP-binding region of
the motor, but has lost its P-loop.
Length = 228
Score = 115 bits (289), Expect = 5e-29
Identities = 59/123 (47%), Positives = 80/123 (65%)
Query: 10 GWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVA 69
G IK+GD +EYN F+ + TKL NPHY PE+ + TL+NF +T GL DQLL VVA
Sbjct: 106 GRYIKIGDKEVEYNPKFRLILHTKLANPHYKPEMQAQCTLINFTVTRDGLEDQLLAAVVA 165
Query: 70 KDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSN 129
K+RPDLE K+ L Q + K LKE+ED +L LSS+ GN L D + ++ L ++K +
Sbjct: 166 KERPDLEQLKSDLTKQQNEFKIVLKELEDSLLSRLSSASGNFLGDTALVENLETTKHTAA 225
Query: 130 EIQ 132
EI+
Sbjct: 226 EIE 228
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 56.9 bits (137), Expect = 4e-08
Identities = 37/252 (14%), Positives = 81/252 (32%), Gaps = 4/252 (1%)
Query: 1 MKQIFKSGAG-WSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVK-VTLLNFMITPVG 58
+K+ FKS + + I + + ++ R+ + I K + + F+ +G
Sbjct: 2545 IKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGD-MGSIEWKQLIQVMFVSKVLG 2603
Query: 59 LADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAI 118
++ + L + L A L + +L L S N+ + +
Sbjct: 2604 CETEIPDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIA 2663
Query: 119 QVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQY 178
+L + K EI+E+++ + E IDA + EY + IA MY
Sbjct: 2664 VLLHNLKKSRKEIEEEESESMEIEDRIDALKSEYNASVKRLESIRVEIAMFDEKALMYNK 2723
Query: 179 SLVWF-DNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAV 237
S+ + ++ + + + + + L ++
Sbjct: 2724 SICELSSEFEKWRRMKSKYLCAIRYMLMSSEWILDHEDRSGFIHRLDVSFLLRTKRFVST 2783
Query: 238 NLRFKAETISME 249
L K +
Sbjct: 2784 LLEDKNYRQVLS 2795
Score = 47.3 bits (112), Expect = 3e-05
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 10/143 (6%)
Query: 429 KKGDWVLLQNCHLAKSWMP--VLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGV 486
K+ W + N L+ W V + + + +W + +++ P+ +L
Sbjct: 2915 KEKSWFEVYNISLSFGWFKRYVEDVVYPIKASRVCGKVKNMWTSMVDADMLPIQLLIAID 2974
Query: 487 KITNEPPKGLRANINRSYLSDP-ISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFG 545
+ D + +C F L + HA + I G
Sbjct: 2975 SFVSSTYPETGCGYADLVEIDRYPFDYTLVIAC-------DDAFYLSWEHAAVASVISAG 3027
Query: 546 PLGWNIQYQFNETDLKISLVQLK 568
P N + F + D + LK
Sbjct: 3028 PKENNEEIYFGDKDFEFKTHLLK 3050
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 34.9 bits (81), Expect = 0.16
Identities = 17/96 (17%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 68 VAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQ--VLSSSK 125
V D P+L+ E +L + + + +L++I+ + ++ + G + ++ +L + +
Sbjct: 325 VGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKE 384
Query: 126 VLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTV 161
LS E++E + + ++ +++ E I+ + T+
Sbjct: 385 KLSEELEELEEELKELKEELESLYSEGK-ISVNKTI 419
>gnl|CDD|219780 pfam08286, Spc24, Spc24 subunit of Ndc80. Spc24 is a component of
the evolutionarily conserved kinetochore-associated
Ndc80 complex and is involved in chromosome segregation.
Length = 117
Score = 32.3 bits (74), Expect = 0.23
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 68 VAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVL 121
+AK+ DLE+E N L + + K +L+E+E++ ++ E D+S + L
Sbjct: 11 LAKELNDLESELNNLQSELEELKERLEELEEQEVEGDEVDEDETPVDDSNVLKL 64
>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain. RanBPM
is a scaffolding protein and is important in regulating
cellular function in both the immune system and the
nervous system. This domain is at the C-terminus of the
proteins and is the binding domain for the CRA motif
(for CT11-RanBPM), which is comprised of approximately
100 amino acids at the C terminal of RanBPM. It was
found to be important for the interaction of RanBPM with
fragile X mental retardation protein (FMRP), but its
functional significance has yet to be determined. This
region contains CTLH and CRA domains annotated by SMART;
however, these may be a single domain, and it is
refereed to as a C-terminal to LisH motif.
Length = 144
Score = 31.4 bits (72), Expect = 0.77
Identities = 9/43 (20%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 654 EVYKSIVVGKIPGA--WAKKSYPSLKPLGSYVQDFLHRLEFLQ 694
++ +S++ G + A W ++ P L + S ++ L +F++
Sbjct: 7 KIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIE 49
>gnl|CDD|192507 pfam10273, WGG, Pre-rRNA-processing protein TSR2. This entry
represents the central conserved section of a family of
proteins described as pre-rRNA-processing protein TSR2.
The region has a distinctive WGG motif but the function
is unknown.
Length = 82
Score = 29.1 bits (66), Expect = 1.6
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 18/63 (28%)
Query: 60 ADQLLGTVVA--KDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESA 117
AD L G +V D++A+ ++ED +L+++ ++ED SA
Sbjct: 33 ADWLAGAIVDLFTSNKDVDAD----------------DLEDVLLEVMDDEFNTVVEDGSA 76
Query: 118 IQV 120
+V
Sbjct: 77 EEV 79
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.9 bits (72), Expect = 1.8
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 14/58 (24%)
Query: 428 LKKGDWVLLQNCHLAKSWMPVLEKMCESLS-------PETT-----HPDFRLWLTSYP 473
L++G W++L +LA + VLE + L PET HP+FRL+ T P
Sbjct: 953 LRRGYWIVLDELNLAPT--DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNP 1008
>gnl|CDD|107331 cd06336, PBP1_ABC_ligand_binding_like_3, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in transport of amino acids,
peptides, or inorganic ions. This group includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. Members of this group are
sequence-similar to members of the family of ABC-type
hydrophobic amino acid transporters (HAAT), such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been determined
experimentally.
Length = 347
Score = 31.1 bits (71), Expect = 2.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 379 LIFLLTPGADPTAVLLKFADDMGFGGSKFS 408
+IFL P P A+++K A ++GF G S
Sbjct: 196 VIFLGGPSPAPAALVIKQARELGFKGGFLS 225
>gnl|CDD|222600 pfam14218, COP23, Circadian oscillating protein COP23. This family
includes the circadian oscillating protein COP23 from
Cyanothece sp. (strain PCC 8801). The levels of this
peripheral membrane protein display a circadian
oscillation.
Length = 138
Score = 29.7 bits (67), Expect = 3.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 367 VSSYNDSVCTVPLIFLLTPGADPTAVLLKFAD 398
V++ CT ++F L PG +P VL + D
Sbjct: 77 VATEKGGSCTNNVLFTLKPGNNPQQVLQQLFD 108
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 30.8 bits (69), Expect = 3.3
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 61 DQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQIL----SSSEGNILEDES 116
L + + + E+ QL Q D ++QL++++ K +QI S++ +I ED
Sbjct: 286 FDQLVSPRKEQK---REERRQLKQQLRDMQKQLRQLQQKYVQIYDSTDDSTDDDIHEDIG 342
Query: 117 AIQVLSSSKVLS 128
+ S S+ S
Sbjct: 343 NLSEDSPSRSNS 354
>gnl|CDD|241434 cd13280, PH_SIP3, Snf1p-interacting protein 3 Pleckstrin homology
(PH) domain. SIP3 interacts with SNF1 protein kinase
and activates transcription when anchored to DNA. It may
function in the SNF1 pathway. SIP3 contain an N-terminal
Bin/Amphiphysin/Rvs (BAR) domain followed by a PH
domain. BAR domains form dimers that bind to membranes,
induce membrane bending and curvature, and may also be
involved in protein-protein interactions. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 105
Score = 28.4 bits (64), Expect = 4.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 618 MYSQSMNTVLVQEMGRFNVLLTTIR 642
M S S + V+E +F VLL +R
Sbjct: 34 MLSLSPSKTYVEETDKFGVLLCNVR 58
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.0 bits (68), Expect = 5.5
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 75 LEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSS-SKVLSNEIQE 133
L+ E +L + AD + IE KI ++ E LE + L + LS QE
Sbjct: 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
Query: 134 KQAVAE---VTEKSIDAARLEY 152
+ E EK + + E
Sbjct: 471 LYDLKEEYDRVEKELSKLQREL 492
Score = 29.7 bits (67), Expect = 7.6
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 16/115 (13%)
Query: 73 PDLEAEKNQLIVQGADNKRQLKEIEDKILQI---LSSSEGNILEDESAIQVLSSSKVLSN 129
+EA+ N+L + D ++K+ E K+ Q+ LS E + + + +
Sbjct: 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK------ 483
Query: 130 EIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVL-------FFCIANLGNIDPMYQ 177
E+ + Q E A+ A VL +A LG++ Y
Sbjct: 484 ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYA 538
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.7 bits (67), Expect = 6.6
Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 74 DLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSK----VLSN 129
+++ E +L + + +R+L+E+E++I ++ + E I L+ + V
Sbjct: 407 EIQEELEELEKELEELERELEELEEEIKKLEEQIN-QLESKELMIAELAGAGEKCPVCGQ 465
Query: 130 EIQEKQAVAEVTEKSIDAARLE 151
E+ E+ + ++ LE
Sbjct: 466 ELPEEHEKELLELYELELEELE 487
>gnl|CDD|225485 COG2933, COG2933, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 358
Score = 29.4 bits (66), Expect = 7.3
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 306 IYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFD 365
I++ QP DA D+L +R + F +++ A Q FV+ +L + PP D
Sbjct: 43 IFECYQPDDA-------DRL--------IRELPFRRLIFARQWFVVGEL---LKDLPPED 84
Query: 366 ----IVSSYNDSVCTVPLIFLLTPGADPTAVLLKFA 397
IV + + + + L KF
Sbjct: 85 RISPIVGMLQGVPEKGGELRVEVADTNESKELSKFC 120
>gnl|CDD|177477 PHA02695, PHA02695, hypothetical protein; Provisional.
Length = 725
Score = 29.6 bits (66), Expect = 8.5
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 19/83 (22%)
Query: 365 DIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADD---------------MGFGGSKFSA 409
D+V D + TVPL LL GADP A F+ F G + S
Sbjct: 366 DVV----DFLDTVPLRTLLAVGADPFASDYVFSTSWINDRPELAEEYVRRFAFSGERMSR 421
Query: 410 LSLGQGQGPIAVKLINDGLKKGD 432
L G P A+K ++D L +
Sbjct: 422 LLFGYALKPAALKRVHDALCAEE 444
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 29.2 bits (66), Expect = 9.6
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 18/73 (24%)
Query: 665 PGAWAKKSYPSLKPLGS------YVQDFLHRLEFLQHIMVIITYQSGSPEFDVKTHQSGQ 718
P A + LKPL + D+L +H + + KT+ +G+
Sbjct: 88 PDALKLQGDDKLKPLPPGKTAVDVIADYLR--YLYEHALEELK----------KTYGNGE 135
Query: 719 WFTKHIEVVITDP 731
+ IE V+T P
Sbjct: 136 FTALDIEWVLTVP 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,969,157
Number of extensions: 3876146
Number of successful extensions: 3260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3252
Number of HSP's successfully gapped: 28
Length of query: 755
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 651
Effective length of database: 6,324,786
Effective search space: 4117435686
Effective search space used: 4117435686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)