RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12682
(755 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 756 bits (1953), Expect = 0.0
Identities = 161/606 (26%), Positives = 289/606 (47%), Gaps = 33/606 (5%)
Query: 1 MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLA 60
K+I K G I+LGD ++++ +F ++ T+ H+ P++ +VT +NF +TP L
Sbjct: 2250 NKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQ 2309
Query: 61 DQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQV 120
Q L + +RPD +++ L+ + + +L+ +E +L LS + GNIL+D+S I
Sbjct: 2310 SQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVIST 2369
Query: 121 LSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSL 180
L + K + EI K E + I Y P+A + ++F + L +YQ+SL
Sbjct: 2370 LETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSL 2428
Query: 181 VWFDNLYRMAIDNTEK---ADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAV 237
F +++ ++N + +R+ LS + + R++ DKL F+L L +
Sbjct: 2429 RAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTI 2488
Query: 238 N-LRFKAETISMENWMFLLTGGVGLD---NPHKNPTTWMVTQSWDEL-CRLDELQEFKGI 292
++ + I W FLL GG L + + T L C ++ F +
Sbjct: 2489 ISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKL 2548
Query: 293 RDHFTAKHQEWKQIYDAQQPQDAPLPQPW-----------QDKLDVFQKLCVLRCIRFDK 341
DH +WKQ + Q + +P+ W + F+K+ +++ D+
Sbjct: 2549 VDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDR 2608
Query: 342 VVPAIQNFVIHDLGQKFVEPPPFDIVSSY-NDSVCTVPLIFLLTPGADPTAVLLKFADDM 400
V+ +FV G+ F+ D+ + + + PL+ PG D ++ + A +
Sbjct: 2609 VLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQL 2668
Query: 401 GFGGSKFSALSLGQGQG-PIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPE 459
++ + ++G +G +A K I K G WVLL+N HLA W+ LEK SLSP
Sbjct: 2669 ---HKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSLSP- 2724
Query: 460 TTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQ 519
HP FRL++TS P ++L+ + E P G++AN+ +++ P + +
Sbjct: 2725 --HPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRM-----DK 2777
Query: 520 QPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAGG 579
QP ++ F L +FHA+I ER+++ PLGW ++FN+ DL+ +L + ++D YS+
Sbjct: 2778 QPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRS 2837
Query: 580 SAGDAK 585
+ K
Sbjct: 2838 NIDPDK 2843
Score = 140 bits (355), Expect = 3e-34
Identities = 26/168 (15%), Positives = 49/168 (29%), Gaps = 23/168 (13%)
Query: 550 NIQYQFNETDL---KISLVQLK-------MFLDQYSEAGGSAGDAKSTEDLIIRVTSDIL 599
N+ + +Q + S+ + + ++
Sbjct: 2930 ESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRATITEWT 2989
Query: 600 QKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSL----------IVMS 649
+ LP L++ + +E+ L+ I N L I +
Sbjct: 2990 KLLPKPLK---QLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKST 3046
Query: 650 FDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIM 697
L + SI G +P W S P L ++ DF R++ L I
Sbjct: 3047 NYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEIS 3094
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 622 bits (1606), Expect = 0.0
Identities = 101/577 (17%), Positives = 222/577 (38%), Gaps = 73/577 (12%)
Query: 1 MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLA 60
++ +G ++++GD ++ + +FK +I + + + +V L++F+ +
Sbjct: 2070 SREFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIE 2129
Query: 61 DQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQV 120
++ + ++ +++ ++ LI + K +LK +E ++L+ L++S+GN+LE++ +
Sbjct: 2130 TRIFDITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVT 2189
Query: 121 LSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSL 180
L++ K + I++K + +E D EY+ I HS +F + G Y S+
Sbjct: 2190 LNNLKKEAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISI 2249
Query: 181 VWFDNLY-RMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNL 239
F + + R+ I + + R++++ +Y ++ +K K++ ++ +
Sbjct: 2250 GQFLSCFKRVFIKKSRETRAARTRVDEILWLLYQEVYCQFSTALDKKFKMIMAMTMFCLY 2309
Query: 240 RFKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAK 299
+F I E + + +G+ + + + + ++L L
Sbjct: 2310 KFD---IESEQYKEAVLTMIGVLSESSDGVPKLTVDTNNDLRYLW--------------- 2351
Query: 300 HQEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFV 359
D + + L+ F+ + VV N
Sbjct: 2352 --------------DYVTTKSYISALNWFKNEFFVDEWNIADVVANSDNN---------- 2387
Query: 360 EPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQG-P 418
D T L++ A + LG +
Sbjct: 2388 ------------------YFTMASERDVDGTFKLIELAKASKE---SLKIIPLGSIENLN 2426
Query: 419 IAVKLINDGLKKGDWVLLQNCHLAKSWMP-VLEKMCESLSPETTHPDFRLWLTSYPSN-L 476
A + I+ +G W+LLQN ++ SW+ L K E H F++++T + +
Sbjct: 2427 YAQEEISKSKIEGGWILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDK 2486
Query: 477 FPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHA 536
P +LQ + E G+ + + +F+ F L +FHA
Sbjct: 2487 LPAPLLQRTDRFVYEDIPGILDTVKDLW------GSQFFTGKISGVWSVYCTFLLSWFHA 2540
Query: 537 LILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQ 573
LI R + P G++ +Y FN+ D + + V L+ L
Sbjct: 2541 LITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLAT 2577
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 3e-13
Identities = 110/647 (17%), Positives = 199/647 (30%), Gaps = 184/647 (28%)
Query: 94 KEIEDKILQILSSSE-GNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSI-DAARLE 151
K+++D ILS E +I+ + A+ + L + KQ E+ +K + + R+
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVS---GTLRLFWTLLSKQ--EEMVQKFVEEVLRIN 90
Query: 152 Y----TPIAAHSTVLFFCIANLGNIDP-----MYQYSLVWFDNLYRMAIDNTE-KADNVP 201
Y +PI P MY D LY DN NV
Sbjct: 91 YKFLMSPIKTE------------QRQPSMMTRMYIEQR---DRLYN---DNQVFAKYNVS 132
Query: 202 QRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGVGL 261
R++ Y + + LL LR A+ + ++ + G G
Sbjct: 133 -RLQ---------PYLKL------RQALL-------ELR-PAKNVLIDG-V----LGSG- 162
Query: 262 DNPHKNPTTWMVTQSWDELCRLDELQEFK--GI---------RDHFTAKHQE--WKQI-- 306
K TW+ ++C ++Q I + + QI
Sbjct: 163 ----K---TWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 307 -YDAQQPQDAPLPQP---WQDKLDVFQK-------LCVLRCIRFDKVVPAIQNFVIHDLG 355
+ ++ + + Q +L K L VL ++ K A F +L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---F---NLS 265
Query: 356 --------QKFVEPPPFDIVSSYNDS-VCTVPLIFLLTPGADPTAVLLKFADDMGFGGSK 406
K V D +S+ + + LTP + ++LLK+ +
Sbjct: 266 CKILLTTRFKQV----TDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYL------DCR 314
Query: 407 FSAL-SLGQGQGPIAVKLINDGLKKG-----DWVLLQNCHLAKSWMPVLEKMCESLSPET 460
L P + +I + ++ G +W + L ++E L P
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT----IIESSLNVLEPAE 370
Query: 461 THPDFRLWLTSYPSNL-FPVSVLQN--GVKITNEPPKGLRANINRSYL-SDPISNPEFYN 516
F L+ +P + P +L I ++ + S + P +
Sbjct: 371 YRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 517 SCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYS- 575
S + L N H I++ +NI F+ DL + +LDQY
Sbjct: 430 SIYL--ELKVKLENEYALHRSIVDH-------YNIPKTFDSDDL------IPPYLDQYFY 474
Query: 576 -------EAGGSAGDAKSTEDLI---------IRVTSDILQKLPPNFNTVQALEKYPTMY 619
+ + IR S NT+Q L+ Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 620 SQSMNTV--LVQEMGRF------NVLLTTIRNSL-IVMSFDLEEVYK 657
+ LV + F N++ + + L I + + E +++
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 56.8 bits (136), Expect = 3e-08
Identities = 96/578 (16%), Positives = 178/578 (30%), Gaps = 184/578 (31%)
Query: 283 LDELQ-EFKGIRDHFTAKHQEWKQIYDAQQPQDAP--------------LPQPWQDKLDV 327
E Q ++K I F + +D + QD P L +
Sbjct: 11 TGEHQYQYKDILSVFE---DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 328 FQKLCVLRCIRFDKVVPAIQNFV--IHDLGQKFV---------EP-PPFDIVSSYNDSVC 375
F L K +Q FV + + KF+ +P + D +
Sbjct: 68 FWTLL-------SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 376 TVPLIF--LLTPGADPTAVL------LKFADDM---GFGGS-KFSALSLGQGQGPIAVKL 423
+F P L L+ A ++ G GS K + ++L
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCK 179
Query: 424 INDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQ 483
++ + W+ L+NC+ ++ + +L+K+ + P TS + + +
Sbjct: 180 MDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPN---------WTSRSDHSSNIKLRI 227
Query: 484 NGVKITNEPPKGLRANI-NRSY------LSDPISNPEFYNSCQQPERFRKLLFNL-CFFH 535
+ ++ LR + ++ Y L + + N + +N+ FNL C
Sbjct: 228 HSIQ------AELRRLLKSKPYENCLLVLLN-VQNAKAWNA-----------FNLSC--K 267
Query: 536 ALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAGGSAGDAKSTEDLIIRVT 595
L+ R K + T ISL M L E + L+++
Sbjct: 268 ILLTTRFK-----QVTDFLSAATTTHISLDHHSMTLTP-DE----------VKSLLLKYL 311
Query: 596 SDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEM-GRFN--------VLLTTIRNSLI 646
Q LP + L P S+ +++ ++ L T I +SL
Sbjct: 312 DCRPQDLPR-----EVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 647 VMSF-DLEEVYKSIVV----GKIPGA-----WAKKSY------------PSL-----KPL 679
V+ + +++ + V IP W SL K
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 680 GSYVQDFLHRLEFLQ--------HIMVIITYQSGSPEFD----VKTHQSGQWFTKHIEVV 727
+ ++ LE H ++ Y FD + + +++ HI
Sbjct: 425 TISIPS-IY-LELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYS-HI--- 477
Query: 728 ITDPMSTHLIS-----RLCIQRDIGYYDFS-----IRH 755
HL + R+ + R + + DF IRH
Sbjct: 478 -----GHHLKNIEHPERMTLFRMV-FLDFRFLEQKIRH 509
Score = 46.8 bits (110), Expect = 2e-05
Identities = 46/290 (15%), Positives = 96/290 (33%), Gaps = 80/290 (27%)
Query: 40 LPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDK 99
LP + L + R L N V N +L I +
Sbjct: 318 LPREVLTTNPR------------RLSIIAESIRDGLATWDNWKHV----NCDKLTTIIES 361
Query: 100 ILQILSSSEGN-------ILEDESAI--QVLSS--SKVLSNEIQEKQAVAEVTEKS-IDA 147
L +L +E + + I +LS V+ +++ V ++ + S ++
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYSLVEK 419
Query: 148 ARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDL 207
E T I+ S L + ++ Y L+R +D+ +DL
Sbjct: 420 QPKEST-ISIPSIYLELKV----KLENEYA--------LHRSIVDHYNIPKTFDS--DDL 464
Query: 208 S-----GYF-TYSLY--TNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGV 259
YF ++ + NI E+ L F ++ ++ RF + I ++ + +G +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHP--ERMTL-FRMVF-LDFRFLEQKIRHDSTAWNASGSI 520
Query: 260 GLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDA 309
L+ LQ+ K + + +++++ +A
Sbjct: 521 -----------------------LNTLQQLKFYKPYICDNDPKYERLVNA 547
Score = 37.1 bits (85), Expect = 0.022
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 17 DTVIEYNDN-FKFYITTKLRNPHYLPEIAV--KVTL-LNFM---ITPVGLADQLLGTVVA 69
D + Y D F +I L+N + + + V L F+ I A G+++
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 70 KDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESA--IQVLSSSKVL 127
L+ K + DN + + + + IL L E N++ + +++ L
Sbjct: 523 -TLQQLKFYKPYIC----DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-----AL 572
Query: 128 SNEIQEKQAVAEVTEKSID 146
E +A+ E K +
Sbjct: 573 MA---EDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.4 bits (177), Expect = 4e-13
Identities = 96/594 (16%), Positives = 170/594 (28%), Gaps = 220/594 (37%)
Query: 92 QLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSID--AAR 149
QL+E +KIL +EG +DE AE+ K + ++
Sbjct: 32 QLQEQFNKILP--EPTEGFAADDEPT------------------TPAELVGKFLGYVSSL 71
Query: 150 LEYTPIAAHSTVL-----FFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRI 204
+E + + VL F L D ++L ++ +N + +
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDI---HALA-----AKLLQENDTT---LVKTK 120
Query: 205 EDLSGYFTYSLYTNICRSIFEKDK-LLFSLILAVNLRFKAETISMENWMFLLTGGVGLDN 263
E + Y T + R +K LF + N + A +F GG G
Sbjct: 121 ELIKNYITARIMAK--RPFDKKSNSALFRAVGEGNAQLVA--------IF---GGQG--- 164
Query: 264 PHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQPWQD 323
N + +EL++ +Y L + +
Sbjct: 165 ---NTDDY-----------FEELRD-----------------LYQTYHVLVGDLIKFSAE 193
Query: 324 KLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLL 383
L +L + +KV Q I + + P D + S S PLI ++
Sbjct: 194 TL---SELIRTT-LDAEKVFT--QGLNILEWLENPSNTPDKDYLLSIPISC---PLIGVI 244
Query: 384 ----------TPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDW 433
G P + S + G QG + I + W
Sbjct: 245 QLAHYVVTAKLLGFTPGELR-----------SYLKGAT-GHSQGLVTAVAIAET---DSW 289
Query: 434 VLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWL-----TSYPSNLFPVSVLQNGVKI 488
+S+ + K L F ++ +YP+ P S+L++ ++
Sbjct: 290 ---------ESFFVSVRKAITVL--------F--FIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 489 TNEPP------KGLR-----------------------ANIN--RSY-LSDP-------- 508
P L + +N ++ +S P
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 509 -----ISNPEFYNSCQQPERFRKLLFNLCF------FH--------ALILERIKFGPLGW 549
P + + P RKL F+ F FH LI + + + +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 550 NIQYQFNETDLKISLVQLKMFLDQYSEAGGSAGDAKSTEDLIIRVTSDILQKLP 603
N + D++I + Y GS D + I D + +LP
Sbjct: 451 NAK------DIQIPV---------YDTFDGS--DLRVLSGSISERIVDCIIRLP 487
Score = 69.7 bits (170), Expect = 3e-12
Identities = 94/593 (15%), Positives = 170/593 (28%), Gaps = 224/593 (37%)
Query: 28 FYITTKLRN--PHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQ 85
F+I ++L+ LPE + TP L + LG V + P + +Q++
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL-- 84
Query: 86 GADNKRQLKEIEDKILQILSSSEGNI------LEDESAIQVLSSSKVLSNEIQEKQAVAE 139
L E E+ L+ +I L E+ ++ + +++ N I +
Sbjct: 85 ----NLCLTEFENCYLE-----GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 140 VTEKSIDAARLEYTPIAAHSTVLFFCIANL-------GNIDPMYQYSLVWFDNLYRMAID 192
+K ++A A A L GN D +F+ L
Sbjct: 136 PFDKKSNSALFR----AVGEGN-----AQLVAIFGGQGNTD-------DYFEEL------ 173
Query: 193 NTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEK-DKLLFSLILAVN--LRFKAETISME 249
+ + Y Y + + + + L LI + + +++
Sbjct: 174 ---------RDL--------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 250 NWMFLLTGGVGLDNPHKNPTT-WM-----------VTQ--SWDELCRL-----DELQE-F 289
W L+NP P ++ V Q + +L EL+
Sbjct: 217 EW---------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 290 KGIRDH--------FTAKHQEWKQIYDA---------------QQ--PQDAPLPQPWQDK 324
KG H A+ W+ + + + P + P +D
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 325 LDVFQK-----LCVLRCIRFDKVVPAI---------------------QNFVI----HDL 354
L+ + L + + ++V + +N V+ L
Sbjct: 328 LENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 355 -G-----QKFVEPP-------PFD-----IVSSYNDSVCTVPLIF---LLTPGADPTAVL 393
G +K P PF + + V P F LL P +D
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPV-ASP--FHSHLLVPASD----- 437
Query: 394 LKFADDMGFGGSKFSALSLGQGQGPIAVKLINDG--LKKG---------DWVLLQNCHLA 442
D+ F+A + I V DG L+ D ++
Sbjct: 438 -LINKDLVKNNVSFNAKDIQ-----IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-- 489
Query: 443 KSWMPVLEKMCESLSPETTHP-DFRLWLTSYPSNLFPVSVL--QN----GVKI 488
W + + TH DF P + VL +N GV++
Sbjct: 490 --WE-------TTTQFKATHILDFG------PGGASGLGVLTHRNKDGTGVRV 527
Score = 31.2 bits (70), Expect = 1.7
Identities = 45/278 (16%), Positives = 91/278 (32%), Gaps = 75/278 (26%)
Query: 508 PISNPEFYNSCQQPERFRKLL----------------FNLCF-FHALILERIKFGPLGWN 550
+ F+ + Q E+F K+L L F + ++ +G
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG-- 78
Query: 551 IQYQFNETDLKISLVQL-KMFL---DQYSEAGGSAGDAKSTED---LIIR--VTSDILQK 601
QF++ L + L + +L D ++ A + +T +I+ +T+ I+ K
Sbjct: 79 ---QFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 602 LPPNFNTVQAL-----EKYPTMYS----QSMNTVLVQEM-GRFNV-------LLTTIRNS 644
P + + AL E + + Q +E+ + L+ +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 645 LIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSY-------------VQDFLHRLE 691
L + + K G W + PS P Y +Q
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLEN--PSNTPDKDYLLSIPISCPLIGVIQ------- 245
Query: 692 FLQHIMVIITYQSGSPEFDVKTHQSGQWFTKHIEVVIT 729
L H +V +P +++++ G T H + ++T
Sbjct: 246 -LAHYVVTAKLLGFTPG-ELRSYLKG--ATGHSQGLVT 279
Score = 31.2 bits (70), Expect = 1.8
Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 72/196 (36%)
Query: 522 ERFRKLLFNLCFFHALILERIKFGPLGWNI-QYQFN--ETDLK--------ISLVQLKMF 570
E + ++F L E+I F + + Y F + L ++L++ F
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 571 LDQYSE---------AG---G--SA----GDAKSTEDLI----IRVTSDILQKLPPNFNT 608
D S+ AG G +A D S E L+ R +Q P
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR--GMTMQVAVPR--- 1799
Query: 609 VQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVGKIPGAW 668
E+GR N + I + SF E + VV ++
Sbjct: 1800 --------------------DELGRSNYGMIAINPGRVAASFSQEAL--QYVVERV---- 1833
Query: 669 AKKSYPSLKPLGSYVQ 684
K++ G V+
Sbjct: 1834 GKRT-------GWLVE 1842
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.050
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 10/34 (29%)
Query: 133 EKQAVAEVTEKSIDAARLEYTP-----IAAHSTV 161
EKQA+ ++ + S+ +L Y +A +T+
Sbjct: 18 EKQALKKL-QASL---KL-YADDSAPALAIKATM 46
Score = 32.6 bits (73), Expect = 0.23
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 20/48 (41%)
Query: 2 KQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTL 49
KQ K KL + K Y P +A+K T+
Sbjct: 19 KQALK-------KL-------QASLKLY------ADDSAPALAIKATM 46
>1w9r_A CBPA-R2, choline binding protein A; receptor, polymeric
immunoglobulin receptor, PIGR, adhesion, invasion,
pathogenesis; NMR {Streptococcus pneumoniae}
Length = 119
Score = 31.9 bits (71), Expect = 0.21
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 68 VAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQ-VLSSSKV 126
VA+ +E K + Q +++R K L+ L +E ++ ++ ++ V +K
Sbjct: 9 VAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLE-LEIAESDVEVKKAELELVKEEAKE 67
Query: 127 LSNEIQEKQAVAEVTEKSIDAARLE 151
NE + KQA AEV K +A RLE
Sbjct: 68 PRNEEKVKQAKAEVESKKAEATRLE 92
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 30.0 bits (68), Expect = 0.66
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 384 TPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLIN-------DGLKKGDWVL 435
TP L K + FG FS ++ G + + VK I GLK D +L
Sbjct: 3 TPVELHKVTLYKDSGMEDFG---FS-VADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLL 57
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.89
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 16/88 (18%)
Query: 67 VVAKDRPDLEAE---------KNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESA 117
+ DR E E + +L A +K +E +K + L E N + E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE--EWNQRQSEQ- 130
Query: 118 IQVLSSSKVLSNEIQEKQAVAEVTEKSI 145
+ +K ++N I +K + I
Sbjct: 131 ---VEKNK-INNRIADKAFYQQPDADII 154
>3s6n_2 SurviVal of motor neuron protein-interacting PROT; SMN complex,
SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS,
snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo
sapiens}
Length = 280
Score = 30.2 bits (67), Expect = 2.2
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 9/127 (7%)
Query: 256 TGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDA 315
+ + L P + T W + ++ +F +R + WK Q D+
Sbjct: 81 SVNISLSGCQPAPEGYSPTLQW----QQQQVAQFSTVRQNVNKHRSHWKS-----QQLDS 131
Query: 316 PLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVC 375
+ P + + ++K C+ + D V N + PP IVS N +
Sbjct: 132 NVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNESPGIDYVQIGFPPLLSIVSRMNQATV 191
Query: 376 TVPLIFL 382
T L +L
Sbjct: 192 TSVLEYL 198
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA
protein, structural genomics, joint center for
structural G JCSG; HET: MSE CIT; 1.80A {Clostridium
difficile}
Length = 352
Score = 29.4 bits (67), Expect = 4.2
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 21/77 (27%)
Query: 41 PEIAVKVT------LLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLK 94
E + T LN M LLG +A+++ + +EK + ++
Sbjct: 137 EEKSGAKTKGYYCTKLNLM---------LLGLQIAREKGIISSEKYNEEIN------KIL 181
Query: 95 EIEDKILQILSSSEGNI 111
+ ++ + S+ I
Sbjct: 182 DAINRFEAVYKLSKQWI 198
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA
recognition, complex E, KH domain, QUA2 homology; NMR
{Homo sapiens} SCOP: d.51.1.1
Length = 131
Score = 28.3 bits (63), Expect = 4.6
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 545 GPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAGGSAGDAKSTEDLIIRVTSDILQKL 602
GP G ++ E + KI + + E L VT++ ++ +
Sbjct: 29 GPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENV 86
>3knz_A Putative sugar binding protein; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
2.50A {Salmonella enterica subsp}
Length = 366
Score = 28.7 bits (65), Expect = 8.1
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 21/77 (27%)
Query: 41 PEIAVKVT------LLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLK 94
E A T +LN M LL VA + L+ E+ + ++ +++
Sbjct: 152 EETAGAKTKGYHCTVLNLM---------LLALAVAGQQQRLDGEQRRSLLL------RME 196
Query: 95 EIEDKILQILSSSEGNI 111
+ + + ++++S+
Sbjct: 197 KTFNHLPALVTASQAWA 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,644,925
Number of extensions: 703728
Number of successful extensions: 1314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1270
Number of HSP's successfully gapped: 26
Length of query: 755
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 654
Effective length of database: 3,881,772
Effective search space: 2538678888
Effective search space used: 2538678888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.5 bits)