RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12682
         (755 letters)



>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
           (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
          Length = 458

 Score = 28.8 bits (64), Expect = 2.9
 Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 24/135 (17%)

Query: 163 FFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNIC-- 220
              + N           +    N   +   +     NV    E LS      L  N    
Sbjct: 273 PVSLINDPRHPYGKLIKIDRLGN---VLGGDAVIYLNVD--NETLSKLVVKRLQNNKAVF 327

Query: 221 ------------RSIFEKDKLLFSLILAVNLRFKAETI----SMENWMFLLTGGVGLDNP 264
                         + + +   +  I     + KA  I    S+     L+TG   +D  
Sbjct: 328 FGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITG-CHVDET 386

Query: 265 HKNPTTWMVTQSWDE 279
            K P  + V  SW +
Sbjct: 387 SKLPLRYRVENSWGK 401


>d1koea_ d.169.1.5 (A:) Endostatin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 172

 Score = 27.2 bits (60), Expect = 4.7
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 397 ADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSW 445
           A  +G  G+  + LS         V+  + G      V L++  L+ SW
Sbjct: 31  ARAVGLSGTFRAFLSSRLQDLYSIVRRADRG--SVPIVNLKDEVLSPSW 77


>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
           N-terminal domain {Synechocystis sp. [TaxId: 1143]}
          Length = 430

 Score = 27.7 bits (61), Expect = 6.2
 Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 13/177 (7%)

Query: 132 QEKQAVAEVTEKSIDAARLEYTPIAAHSTVL----FFCIANLGNIDPMYQYSLVWFDNLY 187
           QE  A         +  RLE   +     V        I    N   + Q  +   +   
Sbjct: 81  QEPSAREVARAYVEEVVRLEKLTVLGWREVPVNSDVLGIQAKNNQPHIEQILVTCPEGCA 140

Query: 188 RMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETIS 247
              +D            +    ++  S     CR+I  K  +   ++    L  K     
Sbjct: 141 GDELDRRLYIARSIIGKKLAEDFYVCSFS---CRTIVYKGMVRSIILGEFYLDLKNP--G 195

Query: 248 MENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWK 304
             +   +                W + Q    L    E+    G  +   A+ +E +
Sbjct: 196 YTSNFAVYHRRF----STNTMPKWPLAQPMRLLGHNGEINTLLGNINWMAAREKELE 248


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,873,705
Number of extensions: 137687
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 6
Length of query: 755
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 663
Effective length of database: 1,144,436
Effective search space: 758761068
Effective search space used: 758761068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)