BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12684
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 34/119 (28%)
Query: 22 ALRYLTGECNYGGRVTDDWDRRTLNTILYKFFCPAALEDENYLFDPSVTDDWDRRTLNTI 81
A+R + G YGGR+ +++D R L + L + F P+A F+P
Sbjct: 2970 AVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSA-------FNP-------------- 3008
Query: 82 LYKFFCPAALEDENYLFDPSGFYYTPNEPDYDGYLNYIKNLPLVASPIIFGMNENADIL 140
++ PS P ++ +I+ LP +++PI G+ ENA+ L
Sbjct: 3009 -------------DFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESL 3054
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 40.0 bits (92), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 34/119 (28%)
Query: 22 ALRYLTGECNYGGRVTDDWDRRTLNTILYKFFCPAALEDENYLFDPSVTDDWDRRTLNTI 81
A+R + G YGGR+ +++D R L + L + F P+A F+P
Sbjct: 2848 AVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSA-------FNP-------------- 2886
Query: 82 LYKFFCPAALEDENYLFDPSGFYYTPNEPDYDGYLNYIKNLPLVASPIIFGMNENADIL 140
++ PS P ++ +I+ LP +++PI G+ ENA+ L
Sbjct: 2887 -------------DFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESL 2932
>pdb|1Q7F|A Chain A, Brain Tumor Nhl Domain
pdb|1Q7F|B Chain B, Brain Tumor Nhl Domain
Length = 286
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 81 ILYKFFCPAALE--------DENYLFDPSGFYYTPNEPDYDG-YLNYIKNLPLVASPIIF 131
+L+KF C LE D+ +F + +Y+G YL I + PI
Sbjct: 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGV 212
Query: 132 GMNENADILKDQQETNLVLGNVLLTQERTVLT 163
G+N N +IL N L + TQ+ +++
Sbjct: 213 GINSNGEILIADNHNNFNL--TIFTQDGQLIS 242
>pdb|3SI2|A Chain A, Structure Of Glycosylated Murine Glutaminyl Cyclase In
Presence Of The Inhibitor Pq50 (Pdbd150)
Length = 327
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 3 GYRSTYLTYLNQLTDVQFEALRYLTGECNYGGRVTDDWDRRT 44
GYRS + N ++ + EA R+L C+Y + WD R
Sbjct: 82 GYRS----FSNIISTLNPEAKRHLVLACHYDSKYFPRWDSRV 119
>pdb|3SI1|A Chain A, Structure Of Glycosylated Murine Glutaminyl Cyclase
Length = 327
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 3 GYRSTYLTYLNQLTDVQFEALRYLTGECNYGGRVTDDWDRRT 44
GYRS + N ++ + EA R+L C+Y + WD R
Sbjct: 82 GYRS----FSNIISTLNPEAKRHLVLACHYDSKYFPRWDSRV 119
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 98 FDPSGFYYTPNEPDYDGYLNYIKNLPL 124
FDP+ Y+T PD+ G L Y+K + L
Sbjct: 19 FDPADSYWT-EHPDFGGQLVYVKEVSL 44
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 26.6 bits (57), Expect = 6.5, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 104 YYTPNEPDYDGYLNYIKNLP 123
++ P++PD D +L + K+LP
Sbjct: 211 HFRPDDPDVDKFLEFYKSLP 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,383,190
Number of Sequences: 62578
Number of extensions: 244026
Number of successful extensions: 424
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 15
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)