Query psy12684
Match_columns 163
No_of_seqs 109 out of 963
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 16:58:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 4.2E-29 1.4E-33 255.6 10.5 121 6-160 2823-2952(3245)
2 4akg_A Glutathione S-transfera 99.9 2.3E-26 7.9E-31 233.9 8.0 114 5-157 2568-2692(2695)
3 1n3k_A Astrocytic phosphoprote 31.9 26 0.0009 25.4 2.3 37 1-37 1-37 (130)
4 3vej_A Ubiquitin-like protein 27.0 27 0.00093 20.5 1.4 13 17-29 5-17 (41)
5 1a1w_A FADD protein; apoptosis 22.6 30 0.001 23.4 1.1 34 1-34 1-34 (91)
6 2lnz_A Ubiquitin-like protein 15.2 65 0.0022 20.5 1.3 15 16-30 27-41 (64)
7 3sdb_A Glutamine-dependent NAD 13.2 2.7E+02 0.0091 25.1 5.4 27 97-123 651-678 (680)
8 2jgq_A Triosephosphate isomera 10.9 94 0.0032 24.5 1.4 24 22-45 180-206 (233)
9 1r2r_A TIM, triosephosphate is 9.9 91 0.0031 24.9 1.0 17 29-45 205-221 (248)
10 2i9e_A Triosephosphate isomera 9.5 96 0.0033 24.9 1.0 17 29-45 204-220 (259)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.95 E-value=4.2e-29 Score=255.61 Aligned_cols=121 Identities=23% Similarity=0.463 Sum_probs=110.0
Q ss_pred HHHHHHHhcc---------CCCchhHHHHhhhcccccccccCHhHHHHHHHHHHHhcCccccccccccCCCCCCCcccch
Q psy12684 6 STYLTYLNQL---------TDVQFEALRYLTGECNYGGRVTDDWDRRTLNTILYKFFCPAALEDENYLFDPSVTDDWDRR 76 (163)
Q Consensus 6 ~~l~~~l~~~---------~~ipw~~L~ylig~i~YGGrVtD~~Drr~L~t~l~~~f~~~~~~~~~~l~~~~~~~~~~~~ 76 (163)
++|.+||+++ ++|||++|+||+|+|+|||||||+||||+|++|+++||++++++.+
T Consensus 2823 ~~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~--------------- 2887 (3245)
T 3vkg_A 2823 DSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPD--------------- 2887 (3245)
T ss_dssp HHHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSS---------------
T ss_pred HHHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCc---------------
Confidence 6789999885 6899999999999999999999999999999999999997766543
Q ss_pred hhhhhhhhccccccccCCCcccCCCCceeCCCCCCHHHHHHHHhcCCCCCCCccccCChHHHHHHHHHHHHHHHHHHhhc
Q psy12684 77 TLNTILYKFFCPAALEDENYLFDPSGFYYTPNEPDYDGYLNYIKNLPLVASPIIFGMNENADILKDQQETNLVLGNVLLT 156 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~I~~lP~~d~P~~fGL~~NA~~~~~~~~a~~il~~ll~l 156 (163)
|.+++++.+.+|...++++|.+||++||..++|+|||||+||+++++.++++.++++++.+
T Consensus 2888 -------------------~~~~~~~~~~~P~~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~l 2948 (3245)
T 3vkg_A 2888 -------------------FPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKM 2948 (3245)
T ss_dssp -------------------CEEEGGGTEECCCCSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------ccCCCCCCCCCCCCCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 4455444578999999999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q psy12684 157 QERT 160 (163)
Q Consensus 157 qp~~ 160 (163)
||++
T Consensus 2949 q~~~ 2952 (3245)
T 3vkg_A 2949 QSSE 2952 (3245)
T ss_dssp HHTT
T ss_pred CCcc
Confidence 9975
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.93 E-value=2.3e-26 Score=233.89 Aligned_cols=114 Identities=11% Similarity=0.167 Sum_probs=99.0
Q ss_pred HHHHHHHHhcc--CCCchhHHHHhhhcccccccccCHhHHHHHHHHHHHhcCccccccccccCCCCCCCcccchhhhhhh
Q psy12684 5 RSTYLTYLNQL--TDVQFEALRYLTGECNYGGRVTDDWDRRTLNTILYKFFCPAALEDENYLFDPSVTDDWDRRTLNTIL 82 (163)
Q Consensus 5 ~~~l~~~l~~~--~~ipw~~L~ylig~i~YGGrVtD~~Drr~L~t~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 82 (163)
.++|.+|++++ ++|||++|+||+|+|+|||||||+||||+|++|+++||++ +.+
T Consensus 2568 ~~~l~~~l~~~~~~~ipw~~l~yl~ge~~YGGrvtd~~Drr~l~t~l~~~~~~---~~~--------------------- 2623 (2695)
T 4akg_A 2568 SVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCG---SDN--------------------- 2623 (2695)
T ss_dssp HHHHHHHHHHSCSCSGGGHHHHHHHHHTTSTTTCCSHHHHHHHHHHHHHHTCC---SSB---------------------
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHHcCC---CCC---------------------
Confidence 37899999998 7899999999999999999999999999999999999996 222
Q ss_pred hhccccccccCCCcccCCC------Cc-eeCCCCCCHHHHHHHHhcC--CCCCCCccccCChHHHHHHHHHHHHHHHHHH
Q psy12684 83 YKFFCPAALEDENYLFDPS------GF-YYTPNEPDYDGYLNYIKNL--PLVASPIIFGMNENADILKDQQETNLVLGNV 153 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~------~~-~~~P~~~~~~~~~~~I~~l--P~~d~P~~fGL~~NA~~~~~~~~a~~il~~l 153 (163)
|.++++ +. |+.|. ++++|.+||++| |..++|+|||||+||+++++.++|+.+++++
T Consensus 2624 -------------~~~~~~~~~~~~~~~~~~p~--~~~~y~~~i~~l~~P~~~~p~~fGlh~NA~i~~~~~~~~~~~~~i 2688 (2695)
T 4akg_A 2624 -------------LQIVPGVRIPQPLLQQSEEE--ERARLTAILSNTIEPADSLSSWLQLPRESILNYERLQAKEVASST 2688 (2695)
T ss_dssp -------------CCSSSSCCCBCCCTTCCHHH--HHHHHHHHHHHCCCCTTHHHHTSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------cccCCCcCcCCCCccCCCCC--CHHHHHHHHHhcCCCCCCChhhcCCChhHHHHHHHHHHHHHHHHH
Confidence 223332 11 33443 789999999999 9999999999999999999999999999999
Q ss_pred hhcc
Q psy12684 154 LLTQ 157 (163)
Q Consensus 154 l~lq 157 (163)
+++|
T Consensus 2689 l~i~ 2692 (2695)
T 4akg_A 2689 EQLL 2692 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
No 3
>1n3k_A Astrocytic phosphoprotein PEA-15; death effector domain, six helix bundle, apoptosis; NMR {Cricetulus griseus} SCOP: a.77.1.4
Probab=31.90 E-value=26 Score=25.38 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHhccCCCchhHHHHhhhccccccccc
Q psy12684 1 MSGYRSTYLTYLNQLTDVQFEALRYLTGECNYGGRVT 37 (163)
Q Consensus 1 ~~~~~~~l~~~l~~~~~ipw~~L~ylig~i~YGGrVt 37 (163)
||.||..|...-++..+-..+.|+||....+=-|+..
T Consensus 1 Ms~fR~lL~~Ise~Lt~eel~~LKFLc~d~Ipk~klE 37 (130)
T 1n3k_A 1 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSE 37 (130)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHTTTSCHHHHT
T ss_pred CchHHHHHHHHHHhcCHHHHHHHHHHhhhhcchhhhh
Confidence 8999999988777767667888899887765555544
No 4
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=27.02 E-value=27 Score=20.50 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=10.9
Q ss_pred CCchhHHHHhhhc
Q psy12684 17 DVQFEALRYLTGE 29 (163)
Q Consensus 17 ~ipw~~L~ylig~ 29 (163)
++||+.++.++..
T Consensus 5 ~VPWd~Ie~lL~~ 17 (41)
T 3vej_A 5 TVPWDDIEALLKN 17 (41)
T ss_dssp TSCHHHHHHHHHH
T ss_pred ecCHHHHHHHHHH
Confidence 5899999998864
No 5
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=22.55 E-value=30 Score=23.38 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHhccCCCchhHHHHhhhcccccc
Q psy12684 1 MSGYRSTYLTYLNQLTDVQFEALRYLTGECNYGG 34 (163)
Q Consensus 1 ~~~~~~~l~~~l~~~~~ipw~~L~ylig~i~YGG 34 (163)
||.||..|...-++.++-.-+.|+|+....+=-|
T Consensus 1 ms~fr~lL~~Ise~L~~eel~~LKFLc~d~i~~~ 34 (91)
T 1a1w_A 1 MDPFLVLLHSVSSSLSSSELTELKYLCLGRVGKR 34 (91)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCSH
T ss_pred CchHHHHHHHHHHHcCHHHHHHHHHHhHhhccch
Confidence 8999999987666655555677777766544333
No 6
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=15.21 E-value=65 Score=20.55 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=12.1
Q ss_pred CCCchhHHHHhhhcc
Q psy12684 16 TDVQFEALRYLTGEC 30 (163)
Q Consensus 16 ~~ipw~~L~ylig~i 30 (163)
-+|||+.++-++..-
T Consensus 27 l~VPWd~Ie~lL~n~ 41 (64)
T 2lnz_A 27 LTVPWDDIEALLKNN 41 (64)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 369999999988653
No 7
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=13.17 E-value=2.7e+02 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=19.9
Q ss_pred ccCCCCceeCCCCCCHHHHHHHHhc-CC
Q psy12684 97 LFDPSGFYYTPNEPDYDGYLNYIKN-LP 123 (163)
Q Consensus 97 ~~~~~~~~~~P~~~~~~~~~~~I~~-lP 123 (163)
.++|-+.+++|...+...+++-+++ +|
T Consensus 651 ~lspr~d~r~psd~~~~~~~~~~~~~~~ 678 (680)
T 3sdb_A 651 ALSPRGDWRAPSDMSARIWLDQIDREVP 678 (680)
T ss_dssp CCCTTTTCCCCSSCCCHHHHHHHHHHSC
T ss_pred CcCCCcccCCccccCHHHHHHHHHhhCC
Confidence 4677678999988877777776665 44
No 8
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=10.92 E-value=94 Score=24.54 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=18.3
Q ss_pred HHHHhh---hcccccccccCHhHHHHH
Q psy12684 22 ALRYLT---GECNYGGRVTDDWDRRTL 45 (163)
Q Consensus 22 ~L~yli---g~i~YGGrVtD~~Drr~L 45 (163)
.+|-.+ -.|.|||-|.-+.+..++
T Consensus 180 ~IR~~l~~~vrIlYGGSV~~~N~~~l~ 206 (233)
T 2jgq_A 180 FLKQILNQKTPLLYGGSVNTQNAKEIL 206 (233)
T ss_dssp HHHHHSCTTSCEEEESSCCTTTHHHHH
T ss_pred HHHHHHhcCCcEEEcCCcChhhHHHHh
Confidence 444444 379999999999998876
No 9
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=9.88 E-value=91 Score=24.86 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=15.2
Q ss_pred cccccccccCHhHHHHH
Q psy12684 29 ECNYGGRVTDDWDRRTL 45 (163)
Q Consensus 29 ~i~YGGrVtD~~Drr~L 45 (163)
.|.|||-|.-+.+..++
T Consensus 205 rIlYGGSV~~~N~~~l~ 221 (248)
T 1r2r_A 205 RIIYGGSVTGATCKELA 221 (248)
T ss_dssp CEEECSCCCTTTHHHHH
T ss_pred cEEEcCCcCHhHHHHHH
Confidence 59999999999998876
No 10
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=9.46 E-value=96 Score=24.92 Aligned_cols=17 Identities=29% Similarity=0.392 Sum_probs=15.2
Q ss_pred cccccccccCHhHHHHH
Q psy12684 29 ECNYGGRVTDDWDRRTL 45 (163)
Q Consensus 29 ~i~YGGrVtD~~Drr~L 45 (163)
.|.|||-|.-+.+..++
T Consensus 204 rIlYGGSV~~~N~~~l~ 220 (259)
T 2i9e_A 204 RIQYGGSVTAANCKELA 220 (259)
T ss_dssp EEEECSCCCTTTHHHHH
T ss_pred cEEEcCCCCHhhHHHHh
Confidence 59999999999998876
Done!