Query psy12684
Match_columns 163
No_of_seqs 109 out of 963
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 16:59:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12684.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12684hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n3ka_ a.77.1.4 (A:) PEA-15 ( 37.8 8.7 0.00063 26.0 2.3 41 1-41 1-41 (130)
2 d1in4a1 a.4.5.11 (A:255-329) H 35.6 9.5 0.0007 23.7 2.1 17 38-54 4-20 (75)
3 d1ixsb1 a.4.5.11 (B:243-318) H 15.7 10 0.00073 23.7 -0.9 16 38-53 4-19 (76)
4 d1z21a1 a.243.1.2 (A:42-145) Y 13.8 43 0.0031 21.8 1.9 24 31-54 38-64 (104)
5 d1dfna_ g.9.1.1 (A:) Defensin 12.6 19 0.0014 18.0 -0.2 9 28-36 17-25 (30)
6 d2cyya1 a.4.5.32 (A:5-64) Puta 11.7 62 0.0045 18.0 2.1 13 38-50 2-14 (60)
7 d2cg4a1 a.4.5.32 (A:4-66) Regu 11.6 62 0.0045 18.2 2.1 15 37-51 3-17 (63)
8 d1i1ga1 a.4.5.32 (A:2-61) LprA 11.4 54 0.0039 18.4 1.7 13 38-50 2-14 (60)
9 d1ryla_ d.276.1.1 (A:) Hypothe 10.2 55 0.004 22.5 1.7 20 19-38 43-62 (164)
10 d1a06a_ d.144.1.7 (A:) Calmodu 9.4 2.8E+02 0.02 19.8 5.8 14 146-159 240-253 (307)
No 1
>d1n3ka_ a.77.1.4 (A:) PEA-15 (phosphoprotein enriched in astrocytes 15 kDa) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=37.77 E-value=8.7 Score=26.01 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHhccCCCchhHHHHhhhcccccccccCHhH
Q psy12684 1 MSGYRSTYLTYLNQLTDVQFEALRYLTGECNYGGRVTDDWD 41 (163)
Q Consensus 1 ~~~~~~~l~~~l~~~~~ipw~~L~ylig~i~YGGrVtD~~D 41 (163)
||.||++|...-+...+-..+.|+|+....+=.|+.....+
T Consensus 1 ~s~fr~lL~~Is~~Lt~eel~~lKflc~d~ip~~~le~~~s 41 (130)
T d1n3ka_ 1 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITT 41 (130)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHTTTSCHHHHTTCCS
T ss_pred CcHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCHHHHHhhcC
Confidence 79999999988777777778999999988777776655444
No 2
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=35.63 E-value=9.5 Score=23.75 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=14.7
Q ss_pred CHhHHHHHHHHHHHhcC
Q psy12684 38 DDWDRRTLNTILYKFFC 54 (163)
Q Consensus 38 D~~Drr~L~t~l~~~f~ 54 (163)
|..||+.|.+++++|=.
T Consensus 4 d~~Dr~yL~~l~~~f~g 20 (75)
T d1in4a1 4 DEFDRKILKTIIEIYRG 20 (75)
T ss_dssp CHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 78999999999988653
No 3
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=15.65 E-value=10 Score=23.71 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=13.2
Q ss_pred CHhHHHHHHHHHHHhc
Q psy12684 38 DDWDRRTLNTILYKFF 53 (163)
Q Consensus 38 D~~Drr~L~t~l~~~f 53 (163)
|..||+.|++++++|=
T Consensus 4 d~~Dr~~L~~l~~~f~ 19 (76)
T d1ixsb1 4 EKRDREILEVLILRFG 19 (76)
T ss_dssp CHHHHHHHHTTTSSSC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7889999999877654
No 4
>d1z21a1 a.243.1.2 (A:42-145) Yop proteins translocation protein H, YscH (IcrP) {Yersinia pestis [TaxId: 632]}
Probab=13.82 E-value=43 Score=21.78 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.4
Q ss_pred ccccc---ccCHhHHHHHHHHHHHhcC
Q psy12684 31 NYGGR---VTDDWDRRTLNTILYKFFC 54 (163)
Q Consensus 31 ~YGGr---VtD~~Drr~L~t~l~~~f~ 54 (163)
.+||| |....|+--|++++++|+-
T Consensus 38 ~Fgg~ql~v~p~~D~pELra~lrEf~P 64 (104)
T d1z21a1 38 RFGQHQGSVVPAIDLPELRSVLQQFDS 64 (104)
T ss_dssp HHTTCCSCCCHHHHHHHHHHHHHHHSC
T ss_pred HhcccccCCCCccchHHHHHHHHHhCc
Confidence 47885 8899999999999999996
No 5
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.63 E-value=19 Score=18.02 Aligned_cols=9 Identities=56% Similarity=1.298 Sum_probs=6.7
Q ss_pred hcccccccc
Q psy12684 28 GECNYGGRV 36 (163)
Q Consensus 28 g~i~YGGrV 36 (163)
|.++|-|||
T Consensus 17 gtc~y~gr~ 25 (30)
T d1dfna_ 17 GTCIYQGRL 25 (30)
T ss_dssp EEEEETTEE
T ss_pred eeEEEeceE
Confidence 567788876
No 6
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=11.72 E-value=62 Score=18.02 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=11.2
Q ss_pred CHhHHHHHHHHHH
Q psy12684 38 DDWDRRTLNTILY 50 (163)
Q Consensus 38 D~~Drr~L~t~l~ 50 (163)
|+.|+++|..+.+
T Consensus 2 D~~D~~Il~~L~~ 14 (60)
T d2cyya1 2 DEIDKKIIKILQN 14 (60)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7899999988866
No 7
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=11.60 E-value=62 Score=18.24 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.2
Q ss_pred cCHhHHHHHHHHHHH
Q psy12684 37 TDDWDRRTLNTILYK 51 (163)
Q Consensus 37 tD~~Drr~L~t~l~~ 51 (163)
-|+.|+++|..+.+.
T Consensus 3 lD~~D~~IL~~L~~~ 17 (63)
T d2cg4a1 3 IDNLDRGILEALMGN 17 (63)
T ss_dssp CCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHc
Confidence 588999999988653
No 8
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=11.41 E-value=54 Score=18.43 Aligned_cols=13 Identities=23% Similarity=0.320 Sum_probs=11.1
Q ss_pred CHhHHHHHHHHHH
Q psy12684 38 DDWDRRTLNTILY 50 (163)
Q Consensus 38 D~~Drr~L~t~l~ 50 (163)
|+.|+++|..+-+
T Consensus 2 D~~D~kIl~~L~~ 14 (60)
T d1i1ga1 2 DERDKIILEILEK 14 (60)
T ss_dssp CSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7889999998865
No 9
>d1ryla_ d.276.1.1 (A:) Hypothetical protein yfbM {Escherichia coli [TaxId: 562]}
Probab=10.16 E-value=55 Score=22.48 Aligned_cols=20 Identities=5% Similarity=0.039 Sum_probs=15.6
Q ss_pred chhHHHHhhhcccccccccC
Q psy12684 19 QFEALRYLTGECNYGGRVTD 38 (163)
Q Consensus 19 pw~~L~ylig~i~YGGrVtD 38 (163)
-|++|+|++.....++...+
T Consensus 43 ~Wd~LhflLtg~~~~~~~~~ 62 (164)
T d1ryla_ 43 RWDFLHFGLTGTSAFDPAKN 62 (164)
T ss_dssp CHHHHHHHHHSSCTTSCCTT
T ss_pred HHHHHHHHHcCCccccCCCC
Confidence 39999999988777766544
No 10
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.43 E-value=2.8e+02 Score=19.76 Aligned_cols=14 Identities=0% Similarity=0.078 Sum_probs=7.8
Q ss_pred HHHHHHHHhhcccC
Q psy12684 146 TNLVLGNVLLTQER 159 (163)
Q Consensus 146 a~~il~~ll~lqp~ 159 (163)
++.++..++...|.
T Consensus 240 ~~~li~~~L~~dP~ 253 (307)
T d1a06a_ 240 AKDFIRHLMEKDPE 253 (307)
T ss_dssp HHHHHHHHSCSSGG
T ss_pred HHHHHHHHccCCHh
Confidence 44556666655554
Done!