RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12684
         (163 letters)



>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 324

 Score = 28.0 bits (62), Expect = 0.54
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 48  ILYKFFCPAALEDENYLFDPSVTDDWDRRTLNTI 81
           +  +  CPA L    +            RTL  +
Sbjct: 183 VFLRLICPAILNPRMFNIISDSPSPIAARTLILV 216


>d1q88a_ e.47.1.1 (A:) 39 kda initiator binding protein, IBP39,
           C-terminal domains {Trichomonas vaginalis [TaxId: 5722]}
          Length = 192

 Score = 27.2 bits (60), Expect = 0.83
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 83  YKFFCPAALEDENYLFDPSGFYYTPNEPD-----YDGYLNYIKNLPLVASPIIFGMNEN 136
           +  F P A ++ N   D    ++  NEP+         +  I N PL+ +   + M+EN
Sbjct: 107 WLTFDPQAEKNANNQRDSISGWFDQNEPNCLILKTPTGIRKIWNKPLIEATGQYLMDEN 165


>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp.,
           AK.1 [TaxId: 1409]}
          Length = 280

 Score = 25.7 bits (55), Expect = 3.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 105 YTPNEPDYDGYLNYIKNL 122
           +TPN+  Y GY    +N 
Sbjct: 1   WTPNDTYYQGYQYGPQNT 18


>d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 324

 Score = 25.7 bits (56), Expect = 3.1
 Identities = 5/34 (14%), Positives = 9/34 (26%)

Query: 48  ILYKFFCPAALEDENYLFDPSVTDDWDRRTLNTI 81
           +  +F  PA +                 R L  +
Sbjct: 183 MFLRFINPAIVSPYEAGILDKKPPPIIERGLKLM 216


>d1n3ka_ a.77.1.4 (A:) PEA-15 (phosphoprotein enriched in
          astrocytes 15 kDa) {Chinese hamster (Cricetulus
          griseus) [TaxId: 10029]}
          Length = 130

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 1  MSGYRSTYLTYLNQLTDVQFEALRYL 26
          M+ Y +      N +T    E L+  
Sbjct: 1  MAEYGTLLQDLTNNITLEDLEQLKSA 26


>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate
           dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum
           [TaxId: 13773]}
          Length = 135

 Score = 23.6 bits (50), Expect = 9.5
 Identities = 13/106 (12%), Positives = 20/106 (18%), Gaps = 10/106 (9%)

Query: 7   TYLTYLNQLTDVQFEALRYLTGECNYGGRVTDDWDRRTLNTILYKFFCPAALEDENY--- 63
           T +TY   +      A R          +  +  D  T+   + K        D      
Sbjct: 19  TLVTYGAVVHKALEAAERVKASVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGG 78

Query: 64  -------LFDPSVTDDWDRRTLNTILYKFFCPAALEDENYLFDPSG 102
                  L      D      +              D  Y      
Sbjct: 79  LGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIAADAAYAPTVER 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 658,447
Number of extensions: 32054
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 13
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)