Query psy12687
Match_columns 143
No_of_seqs 154 out of 858
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 17:04:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 99.9 1.3E-25 4.6E-30 207.6 7.1 136 3-143 144-284 (3245)
2 4akg_A Glutathione S-transfera 99.9 1.8E-24 6.3E-29 198.9 5.0 122 17-143 217-343 (2695)
3 4ioe_A Secreted protein ESXB; 72.7 12 0.00042 22.1 7.8 65 56-139 21-93 (93)
4 3gwk_C SAG1039, putative uncha 59.9 25 0.00085 20.9 9.4 64 56-138 20-91 (98)
5 1lbj_A Motilin; A-helix, B-tur 54.7 9.1 0.00031 17.6 1.9 18 114-131 3-20 (26)
6 3bj4_A Potassium voltage-gated 40.8 43 0.0015 18.0 4.8 35 72-107 14-48 (49)
7 3cuq_C Vacuolar protein-sortin 39.9 12 0.00041 25.9 1.5 18 114-131 58-75 (176)
8 3swf_A CGMP-gated cation chann 35.0 69 0.0024 18.8 7.3 46 55-100 4-49 (74)
9 3zbh_A ESXA; unknown function, 35.0 68 0.0023 18.7 9.4 64 56-138 21-92 (99)
10 1xb4_A VPS25, hypothetical 23. 30.3 16 0.00056 25.8 1.0 18 114-131 74-91 (202)
11 1k8r_B Protein kinase BYR2; si 29.5 26 0.0009 21.7 1.7 21 7-27 18-38 (110)
12 3swy_A Cyclic nucleotide-gated 26.3 80 0.0027 16.7 6.2 40 56-95 3-42 (46)
13 4ef4_A Transmembrane protein 1 22.2 19 0.00066 26.4 0.1 65 66-130 150-224 (265)
14 2ovc_A Potassium voltage-gated 21.2 82 0.0028 15.4 2.3 23 73-96 8-30 (33)
15 2lor_A Transmembrane protein 1 26.0 21 0.00072 22.5 0.0 12 103-114 84-95 (108)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.92 E-value=1.3e-25 Score=207.56 Aligned_cols=136 Identities=24% Similarity=0.419 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCc---chhhhhhhhcccCcccccccccchhhhhHHHHHHHhhhhhHHHhhhH-HHhH
Q psy12687 3 LNEVKDEYMSSIKKAVVDFAIHDPR---EPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVL-SEMS 78 (143)
Q Consensus 3 ~~ei~~dy~~~~kkaivd~vL~d~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~l~~~~-s~~~ 78 (143)
+.+..+.+..+..+|..|+.|++.+ ...|...++...+|.. ..+.+++.+++++.|+||+.++++|. |+|+
T Consensus 144 l~~~~~~i~~I~~~A~~E~~iE~~L~~i~~~W~~~~f~~~~~~~-----~~~ll~~~dei~~~led~~~~l~sm~~S~~~ 218 (3245)
T 3vkg_A 144 LARNENIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQR-----KCKLVRGWDDLFNKLAEHLNSISAMKMSPYY 218 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCEEEEETT-----TEEEEECHHHHHHHHHHHHHHHHHTTSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEeccC-----CeeEeCCHHHHHHHHHHHHHHHHHHhcCCch
Confidence 3466788899999999999998877 5668877766544432 24467788999999999999999997 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccC-chhHhHHhHHHHhHHHHhhhhhhhcC
Q psy12687 79 NIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFS-SPDIQAQMPEEGRRFSAMDKLTCVHT 143 (143)
Q Consensus 79 ~~f~~~v~~w~~~L~~~~~~l~~w~~~Q~~W~~L~~if~-~~~i~~~lp~e~~~F~~v~~~~~~~~ 143 (143)
++|++++..|+++|+.++++|+.|++||++|+||+|||+ |+||++|||.|+++|+.||++|+.|+
T Consensus 219 ~~f~~~v~~We~~L~~~~~il~~W~~vQ~~W~yLe~IF~~s~DI~~qLP~E~~rF~~vd~~~~~im 284 (3245)
T 3vkg_A 219 KVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAIL 284 (3245)
T ss_dssp TGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTTSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 79999999999999999999999864
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.89 E-value=1.8e-24 Score=198.90 Aligned_cols=122 Identities=24% Similarity=0.297 Sum_probs=100.2
Q ss_pred HHHHhhhcCCc---chhhhhhhhcccCcccccccccchhhhhHHHHHHHhhhhhHHHhhhH-HHhHHHHHHHHHHHHHHH
Q psy12687 17 AVVDFAIHDPR---EPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVL-SEMSNIWFKNFKDWEEKL 92 (143)
Q Consensus 17 aivd~vL~d~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~l~~~~-s~~~~~f~~~v~~w~~~L 92 (143)
|..|+.|++.+ +..|..+++...+|. .+.+.+++.+++++.|+||+..+++|. |+|+++|++++..|+++|
T Consensus 217 AskE~~iE~~L~~i~~~W~~~~f~~~~~~-----~~~~~l~~~d~i~~~l~d~~~~l~~m~~s~~~~~f~~~~~~w~~~L 291 (2695)
T 4akg_A 217 KSDEFVIEKSLNRIKKFWKEAQYEVIEHS-----SGLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKL 291 (2695)
T ss_dssp ----CHHHHHHHHHHHHHTSCCCEEEECS-----SSCEEEECTHHHHHHHHHHHHHHHHTSSCSTTTTTHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHhhceEEEEEEec-----CCeEEECCHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 33445554433 344555544433332 245677889999999999999999997 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhccc-CchhHhHHhHHHHhHHHHhhhhhhhcC
Q psy12687 93 MLLQEIIDEWVKVQQTWMYLEPIF-SSPDIQAQMPEEGRRFSAMDKLTCVHT 143 (143)
Q Consensus 93 ~~~~~~l~~w~~~Q~~W~~L~~if-~~~~i~~~lp~e~~~F~~v~~~~~~~~ 143 (143)
+.++++|+.|++||++|+||+||| +|+||++|||.|+++|+.||+.|+.|+
T Consensus 292 ~~~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~vd~~~~~im 343 (2695)
T 4akg_A 292 TKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMIT 343 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 699999999999999999999999874
No 3
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=72.68 E-value=12 Score=22.07 Aligned_cols=65 Identities=9% Similarity=0.213 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhhHHHhhhHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCchhHhHHhHH
Q psy12687 56 FDQNKKKLDNSLFTIHPVLSEMSN--------IWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPE 127 (143)
Q Consensus 56 ~~~~~~~L~~~L~~l~~~~s~~~~--------~f~~~v~~w~~~L~~~~~~l~~w~~~Q~~W~~L~~if~~~~i~~~lp~ 127 (143)
+......|++.+..|...+.+... .|...+..|...+..+.+.|+ +|...|-.
T Consensus 21 ~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~-------------------~i~~~L~~ 81 (93)
T 4ioe_A 21 FKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILE-------------------GISTDLKR 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
Confidence 444445555555555544444333 344555555555555544443 67778888
Q ss_pred HHhHHHHhhhhh
Q psy12687 128 EGRRFSAMDKLT 139 (143)
Q Consensus 128 e~~~F~~v~~~~ 139 (143)
=+..|...|..|
T Consensus 82 ~A~~~~~~D~~y 93 (93)
T 4ioe_A 82 IADKFRNTDNAY 93 (93)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHhhccC
Confidence 888888888665
No 4
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=59.94 E-value=25 Score=20.94 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHHHHHhhhhhHHHhhhHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCchhHhHHhHH
Q psy12687 56 FDQNKKKLDNSLFTIHPVLSEMS--------NIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPE 127 (143)
Q Consensus 56 ~~~~~~~L~~~L~~l~~~~s~~~--------~~f~~~v~~w~~~L~~~~~~l~~w~~~Q~~W~~L~~if~~~~i~~~lp~ 127 (143)
+......|+..+..|...+.+.. .-|......|...+..+.+.|+ +|...|-.
T Consensus 20 ~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~-------------------~i~~~L~~ 80 (98)
T 3gwk_C 20 YTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLE-------------------DINQQLLK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
Confidence 44444445555555554443333 3478888889999988887776 56677777
Q ss_pred HHhHHHHhhhh
Q psy12687 128 EGRRFSAMDKL 138 (143)
Q Consensus 128 e~~~F~~v~~~ 138 (143)
=+..|...|..
T Consensus 81 ~a~~~~~~D~~ 91 (98)
T 3gwk_C 81 VADIIEQTDAD 91 (98)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 5
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=54.73 E-value=9.1 Score=17.61 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=12.9
Q ss_pred cccCchhHhHHhHHHHhH
Q psy12687 114 PIFSSPDIQAQMPEEGRR 131 (143)
Q Consensus 114 ~if~~~~i~~~lp~e~~~ 131 (143)
|||..+|+++.--.|.++
T Consensus 3 PiFt~selqr~qEkErNk 20 (26)
T 1lbj_A 3 PIFTYGELQRMQEKERNK 20 (26)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHhcc
Confidence 899988887765555443
No 6
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=40.83 E-value=43 Score=18.05 Aligned_cols=35 Identities=6% Similarity=0.341 Sum_probs=25.2
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12687 72 PVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQ 107 (143)
Q Consensus 72 ~~~s~~~~~f~~~v~~w~~~L~~~~~~l~~w~~~Q~ 107 (143)
+|+++++.. +..+...+.||..+-+++...+.-|+
T Consensus 14 S~~~Rl~rV-E~qV~~md~KLd~l~~~~~~~l~~~~ 48 (49)
T 3bj4_A 14 TIGARLNRV-EDKVTQLDQRLALITDMLHQLLSLHG 48 (49)
T ss_dssp SHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344565554 78888889999998888887665543
No 7
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=39.93 E-value=12 Score=25.90 Aligned_cols=18 Identities=28% Similarity=0.665 Sum_probs=16.3
Q ss_pred cccCchhHhHHhHHHHhH
Q psy12687 114 PIFSSPDIQAQMPEEGRR 131 (143)
Q Consensus 114 ~if~~~~i~~~lp~e~~~ 131 (143)
|+|.++.|.+.||.|+.+
T Consensus 58 pLF~N~~I~R~Ls~e~~~ 75 (176)
T 3cuq_C 58 PLFNNVKLQRKLPVESIQ 75 (176)
T ss_dssp TTSEETTTTEECCHHHHH
T ss_pred CCcCCccccCcCCHHHHH
Confidence 999999999999998865
No 8
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=35.05 E-value=69 Score=18.78 Aligned_cols=46 Identities=4% Similarity=0.201 Sum_probs=31.0
Q ss_pred hHHHHHHHhhhhhHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12687 55 TFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIID 100 (143)
Q Consensus 55 ~~~~~~~~L~~~L~~l~~~~s~~~~~f~~~v~~w~~~L~~~~~~l~ 100 (143)
.+++--..|+.++..+++-+++++.-+...-.....++..+..-+.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567778888999889888877776665555555555555554433
No 9
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=35.03 E-value=68 Score=18.70 Aligned_cols=64 Identities=3% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHHHHHHhhhhhHHHhhhHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCchhHhHHhHH
Q psy12687 56 FDQNKKKLDNSLFTIHPVLSEMS--------NIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPE 127 (143)
Q Consensus 56 ~~~~~~~L~~~L~~l~~~~s~~~--------~~f~~~v~~w~~~L~~~~~~l~~w~~~Q~~W~~L~~if~~~~i~~~lp~ 127 (143)
+......|++.+..|...+.+.. .-|......|...+..+.+.|+ +|...|-.
T Consensus 21 ~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~-------------------~i~~~L~~ 81 (99)
T 3zbh_A 21 YNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLN-------------------EVGQQLHN 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
Confidence 34444444444444444433333 3467777888888888877765 45566666
Q ss_pred HHhHHHHhhhh
Q psy12687 128 EGRRFSAMDKL 138 (143)
Q Consensus 128 e~~~F~~v~~~ 138 (143)
=+..|...|..
T Consensus 82 ~a~~~~~~d~~ 92 (99)
T 3zbh_A 82 SATILEDTDQQ 92 (99)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666653
No 10
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=30.28 E-value=16 Score=25.77 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=16.3
Q ss_pred cccCchhHhHHhHHHHhH
Q psy12687 114 PIFSSPDIQAQMPEEGRR 131 (143)
Q Consensus 114 ~if~~~~i~~~lp~e~~~ 131 (143)
|+|.++.|.+.||.|..+
T Consensus 74 pLF~N~~I~RrLs~e~~~ 91 (202)
T 1xb4_A 74 NLFNNEDIQRSVSQVFID 91 (202)
T ss_dssp BTTEETTTTEECCHHHHH
T ss_pred CCcCCccccCcCCHHHHH
Confidence 899999999999998865
No 11
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=29.51 E-value=26 Score=21.74 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCc
Q psy12687 7 KDEYMSSIKKAVVDFAIHDPR 27 (143)
Q Consensus 7 ~~dy~~~~kkaivd~vL~d~~ 27 (143)
+-+|..++-+|+..|.|+||.
T Consensus 18 ~~~y~~~L~~ALkKF~ledps 38 (110)
T 1k8r_B 18 RGDYQKTLAIALKKFSLEDAS 38 (110)
T ss_dssp CSCHHHHHHHHHHHHTCCCTT
T ss_pred hhhHHHHHHHHHHHcCCCChh
Confidence 357899999999999999986
No 12
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.26 E-value=80 Score=16.70 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhHHHhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy12687 56 FDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLL 95 (143)
Q Consensus 56 ~~~~~~~L~~~L~~l~~~~s~~~~~f~~~v~~w~~~L~~~ 95 (143)
+++--..|+.++..+++-++++++-+...-.....++..+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888888777776666555444444444443
No 13
>4ef4_A Transmembrane protein 173; sting/MITA/ERIS/MPYS/TMEM173, innate immune system, type I interferon, dimerization, C-DI-GMP; HET: C2E; 2.15A {Homo sapiens} PDB: 4ef5_A 4f9e_A 4f9g_A* 4f5e_A* 4f5d_A* 4f5w_A 4f5y_A*
Probab=22.22 E-value=19 Score=26.41 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=44.2
Q ss_pred hhHHHhhhH-HHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHhc-----ccCchhHhHHhHHHHh
Q psy12687 66 SLFTIHPVL-SEMSNIWF-KNFKDWEEKLMLLQEIIDEWVKVQQTW---MYLEP-----IFSSPDIQAQMPEEGR 130 (143)
Q Consensus 66 ~L~~l~~~~-s~~~~~f~-~~v~~w~~~L~~~~~~l~~w~~~Q~~W---~~L~~-----if~~~~i~~~lp~e~~ 130 (143)
-|.|+..|. ....++++ ++...|......+.+||+.|-+||.+. +|=++ ++-|..|.++|-++.+
T Consensus 150 PL~TL~~msq~~~a~~sr~~R~Eq~~lF~rtL~~ILe~~pEcrn~~eLI~Y~d~~~g~~~~ls~~iL~hlrq~~~ 224 (265)
T 4ef4_A 150 PLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEK 224 (265)
T ss_dssp HHHHHHHHHTCGGGCCCHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEEEEECCC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhcCHHHhCceEEEecCCcccCCcccHHHHHHHHHHhhhc
Confidence 344555554 23334444 466778888889999999999999766 24344 5557888888877665
No 14
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=21.22 E-value=82 Score=15.41 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=12.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Q psy12687 73 VLSEMSNIWFKNFKDWEEKLMLLQ 96 (143)
Q Consensus 73 ~~s~~~~~f~~~v~~w~~~L~~~~ 96 (143)
|+++++.. +.++..-+.||..+-
T Consensus 8 m~~Rl~kV-E~qv~~md~KLd~l~ 30 (33)
T 2ovc_A 8 MMGRVVKV-EKQVQSIEHKLDLLL 30 (33)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34454443 556666666666553
No 15
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=26.04 E-value=21 Score=22.46 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=10.3
Q ss_pred HHHHHHHHhHhc
Q psy12687 103 VKVQQTWMYLEP 114 (143)
Q Consensus 103 ~~~Q~~W~~L~~ 114 (143)
..||..|++||.
T Consensus 84 ~kC~~~Wm~lEt 95 (108)
T 2lor_A 84 EKCNNLWLFLET 95 (108)
Confidence 579999999984
Done!