Query psy12687
Match_columns 143
No_of_seqs 154 out of 858
Neff 8.6
Searched_HMMs 13730
Date Fri Aug 16 17:04:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12687.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12687hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o4ta1 a.69.4.1 (A:16-105) Un 36.8 15 0.0011 21.0 3.0 48 87-134 30-79 (90)
2 d1wa8a1 a.25.3.1 (A:1-99) ESAT 33.0 37 0.0027 18.8 6.3 48 56-103 17-72 (99)
3 d2ay0a1 a.43.1.11 (A:3-45) Bif 28.4 14 0.001 18.2 1.5 10 13-22 30-39 (43)
4 d2o3la1 a.69.4.1 (A:14-95) Hyp 25.8 52 0.0038 18.1 4.7 45 88-132 35-81 (82)
5 d1xb4a1 a.4.5.54 (A:2-125) Vac 22.3 13 0.00095 22.6 0.9 19 113-131 72-90 (124)
6 d2hh6a1 a.69.4.1 (A:1-112) Unc 13.5 55 0.004 19.2 2.2 48 86-133 49-98 (112)
7 d1gvna_ a.8.2.1 (A:) Plasmid m 12.3 98 0.0072 17.0 2.9 24 4-27 9-32 (88)
8 d2ilka_ a.26.1.3 (A:) Interleu 10.8 82 0.006 19.5 2.5 30 110-139 66-100 (155)
9 d1wa8b1 a.25.3.1 (B:602-695) E 10.7 1.3E+02 0.0096 16.1 6.7 46 57-102 18-71 (94)
10 d1qcsa1 b.52.2.3 (A:0-85) N-te 10.7 35 0.0025 19.1 0.6 8 105-112 66-73 (86)
No 1
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=36.79 E-value=15 Score=20.96 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccCc--hhHhHHhHHHHhHHHH
Q psy12687 87 DWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSS--PDIQAQMPEEGRRFSA 134 (143)
Q Consensus 87 ~w~~~L~~~~~~l~~w~~~Q~~W~~L~~if~~--~~i~~~lp~e~~~F~~ 134 (143)
.|......+.++|+.+.+.|..=...+.|||. .+....|-.+++.|..
T Consensus 30 ~~~~~~~il~dil~lleea~~~G~~v~ev~G~D~~~f~deli~~~k~~~d 79 (90)
T d2o4ta1 30 ELNEGIGLLSEILGFFEEGAAAGKGVLDVTGTDVAAFCDALIGDSKTYAD 79 (90)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHTTSCSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHHHhhchhhHH
Confidence 35556778899999999999999999999983 3666666656555544
No 2
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=33.04 E-value=37 Score=18.79 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhhHHHhhhHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12687 56 FDQNKKKLDNSLFTIHPVLSEMS--------NIWFKNFKDWEEKLMLLQEIIDEWV 103 (143)
Q Consensus 56 ~~~~~~~L~~~L~~l~~~~s~~~--------~~f~~~v~~w~~~L~~~~~~l~~w~ 103 (143)
++.....|++.|..+...+.+.. .-|......|......+.+.|+...
T Consensus 17 ~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~ 72 (99)
T d1wa8a1 17 FERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEIS 72 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555665555555443332 3478888889998888888887543
No 3
>d2ay0a1 a.43.1.11 (A:3-45) Bifunctional protein putA {Escherichia coli [TaxId: 562]}
Probab=28.39 E-value=14 Score=18.18 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=8.4
Q ss_pred HHHHHHHHhh
Q psy12687 13 SIKKAVVDFA 22 (143)
Q Consensus 13 ~~kkaivd~v 22 (143)
.||+||..|+
T Consensus 30 L~kqAI~~Yl 39 (43)
T d2ay0a1 30 LIKQAIFSYL 39 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5788999887
No 4
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=25.78 E-value=52 Score=18.15 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccCc--hhHhHHhHHHHhHH
Q psy12687 88 WEEKLMLLQEIIDEWVKVQQTWMYLEPIFSS--PDIQAQMPEEGRRF 132 (143)
Q Consensus 88 w~~~L~~~~~~l~~w~~~Q~~W~~L~~if~~--~~i~~~lp~e~~~F 132 (143)
+.+....+.++|+.+.+.|..=.....|||. .+....|-.+++.|
T Consensus 35 ~~~~~~il~dil~l~eea~~~G~~v~ev~G~D~~~f~deli~~~k~~ 81 (82)
T d2o3la1 35 GMDMLHIQYELIDLFEAGAAEGRQVLDITGEDVASFADELVANAKTY 81 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHHHHhcccc
Confidence 4555677789999999999999999999983 36777777777665
No 5
>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.35 E-value=13 Score=22.59 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=16.4
Q ss_pred hcccCchhHhHHhHHHHhH
Q psy12687 113 EPIFSSPDIQAQMPEEGRR 131 (143)
Q Consensus 113 ~~if~~~~i~~~lp~e~~~ 131 (143)
.|+|.++.|.+.||.|..+
T Consensus 72 ~pLF~N~~I~R~Ls~e~~~ 90 (124)
T d1xb4a1 72 KNLFNNEDIQRSVSQVFID 90 (124)
T ss_dssp CBTTEETTTTEECCHHHHH
T ss_pred CCCccCcccCCcCCHHHHH
Confidence 4699999999999998764
No 6
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus halodurans [TaxId: 86665]}
Probab=13.52 E-value=55 Score=19.23 Aligned_cols=48 Identities=8% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCc--hhHhHHhHHHHhHHH
Q psy12687 86 KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSS--PDIQAQMPEEGRRFS 133 (143)
Q Consensus 86 ~~w~~~L~~~~~~l~~w~~~Q~~W~~L~~if~~--~~i~~~lp~e~~~F~ 133 (143)
.+|.+....+.+||+.+.+.|..=.....|||. ......|-.++.++.
T Consensus 49 ~~~~~~~~il~~Il~l~eea~~~G~~v~~v~G~D~~~f~deli~~~~~~~ 98 (112)
T d2hh6a1 49 TDWQDTKRIFGGILDLFEEGAAEGKKVTDLTGEDVAAFCDELMKDTKTWM 98 (112)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHHHTTSCBHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHHHHHhhhhH
Confidence 356667788899999999999998899999983 355555555544443
No 7
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=12.26 E-value=98 Score=16.99 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCc
Q psy12687 4 NEVKDEYMSSIKKAVVDFAIHDPR 27 (143)
Q Consensus 4 ~ei~~dy~~~~kkaivd~vL~d~~ 27 (143)
.||-.++..++...++.|||..-+
T Consensus 9 iEIinE~~ssiy~kvlNyVln~EL 32 (88)
T d1gvna_ 9 IEIINELSASVYNRVLNYVLNHEL 32 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 478889999999999999995543
No 8
>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.75 E-value=82 Score=19.47 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=20.6
Q ss_pred HhHhcccC-----chhHhHHhHHHHhHHHHhhhhh
Q psy12687 110 MYLEPIFS-----SPDIQAQMPEEGRRFSAMDKLT 139 (143)
Q Consensus 110 ~~L~~if~-----~~~i~~~lp~e~~~F~~v~~~~ 139 (143)
.||+.||. +++|+..++.-+..|..+.+..
T Consensus 66 FYLe~V~p~~~~~~~~i~~~v~sLan~f~~L~~~L 100 (155)
T d2ilka_ 66 FYLEEVMPQAENQDPDIKAHVNSLGENLKTLRLRL 100 (155)
T ss_dssp HHHHHTHHHHHTTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHH
Confidence 47777772 4577777777777777776553
No 9
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.75 E-value=1.3e+02 Score=16.14 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhHHHhhhHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q psy12687 57 DQNKKKLDNSLFTIHPVLSEMSN--------IWFKNFKDWEEKLMLLQEIIDEW 102 (143)
Q Consensus 57 ~~~~~~L~~~L~~l~~~~s~~~~--------~f~~~v~~w~~~L~~~~~~l~~w 102 (143)
......|+..|..|...+.+... -|......|......+.++|...
T Consensus 18 ~~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L~~i 71 (94)
T d1wa8b1 18 QGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNL 71 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333 36667777888888877777643
No 10
>d1qcsa1 b.52.2.3 (A:0-85) N-terminal domain of NSF-N, NSF-Nn {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=10.68 E-value=35 Score=19.07 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=4.0
Q ss_pred HHHHHHhH
Q psy12687 105 VQQTWMYL 112 (143)
Q Consensus 105 ~Q~~W~~L 112 (143)
+||+|..|
T Consensus 66 ~QR~wa~l 73 (86)
T d1qcsa1 66 PQRKWAGL 73 (86)
T ss_dssp HHHHHHTC
T ss_pred hhHhhhcc
Confidence 35555443
Done!